AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1011060


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1011060 MtrunA17_Chr7g0222751 77.959 245 3 3 1 199 1 240 2.54e-123 348
Msa1011060 MtrunA17_Chr1g0212681 39.450 109 50 1 107 199 126 234 3.72e-24 95.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1011060 AT3G55330.1 44.390 205 65 3 41 196 24 228 1.94e-49 160
Msa1011060 AT2G39470.1 27.984 243 107 6 7 199 14 238 4.37e-21 87.8
Msa1011060 AT2G39470.2 30.220 182 79 3 64 199 51 230 5.42e-21 87.0

Find 58 sgRNAs with CRISPR-Local

Find 391 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAACAGGATATCAAAGAATT+TGG 0.153819 7_1:-14846860 Msa1011060:CDS
TGATATCCTGTTTGCTTGTT+GGG 0.269123 7_1:+14846870 None:intergenic
TTGATATCCTGTTTGCTTGT+TGG 0.304273 7_1:+14846869 None:intergenic
TATGGCAAACCCTTCTGTTT+AGG 0.320550 7_1:-14844267 Msa1011060:intron
CATACTGCATAACAGTAATA+TGG 0.342918 7_1:-14844285 Msa1011060:three_prime_UTR
CGTTGAAGTCTTTGCAGTTA+TGG 0.345579 7_1:-14844343 Msa1011060:three_prime_UTR
TGCAGTTATGGTTGTTACTT+TGG 0.352616 7_1:-14844331 Msa1011060:three_prime_UTR
AGAATTTGGGTCACCTGAAC+AGG 0.357238 7_1:-14846846 Msa1011060:intron
TGTAAACCTCTAACCTGTTC+AGG 0.390077 7_1:+14846833 None:intergenic
GTAATCAAACTTTGAAAAGT+TGG 0.397062 7_1:+14844466 None:intergenic
AACAGGATATCAAAGAATTT+GGG 0.404616 7_1:-14846859 Msa1011060:CDS
AAGGGATGCCATTGTTGGCT+TGG 0.406266 7_1:+14849727 None:intergenic
TTCAATCTTACAAGAAATTG+AGG 0.413204 7_1:+14848332 None:intergenic
CTGAAATCCTGTCTTATTAT+CGG 0.414796 7_1:+14848220 None:intergenic
AGAGCATGTCGAGTGTAGTT+TGG 0.423846 7_1:+14844673 None:intergenic
TATTGTTCTATCTATGTGGT+TGG 0.427268 7_1:+14849789 None:intergenic
CTTTCAGAACTCTTTCCCTC+AGG 0.433137 7_1:-14849675 Msa1011060:intron
TCAATTCGAGTTCGTTGCTC+AGG 0.443149 7_1:-14844698 Msa1011060:CDS
CCATCTTTCCTATCCACAAC+TGG 0.446635 7_1:+14848197 None:intergenic
CAGGAGCAAATGAGAGAAGA+TGG 0.450749 7_1:-14844530 Msa1011060:CDS
GAACTGTCATCTTCATCAAC+AGG 0.458019 7_1:-14849482 Msa1011060:intron
ACAACATGTAGGCAAGCAAA+GGG 0.459362 7_1:+14843941 None:intergenic
CTCATTTGCTCCTGTAGTCA+AGG 0.464935 7_1:+14844539 None:intergenic
AATGATCCCAACAAGCAAAC+AGG 0.474787 7_1:-14846876 Msa1011060:CDS
TCCAGGTAGCGTCATTCCTC+TGG 0.479059 7_1:-14843985 Msa1011060:intron
AAGTTGGAAGGATTCTACTA+TGG 0.484592 7_1:+14844482 None:intergenic
TCAATCTTACAAGAAATTGA+GGG 0.499708 7_1:+14848333 None:intergenic
CCAGTTGTGGATAGGAAAGA+TGG 0.501189 7_1:-14848197 Msa1011060:CDS
TGTTCTATCTATGTGGTTGG+AGG 0.504242 7_1:+14849792 None:intergenic
TGTCGCCAGCGTGAAATTGA+CGG 0.507223 7_1:-14844733 Msa1011060:intron
AAATATAATAAACTCTTCAT+CGG 0.507642 7_1:-14844422 Msa1011060:three_prime_UTR
GTTCTATTTACCTAAACAGA+AGG 0.507945 7_1:+14844257 None:intergenic
GCTCTCAGCGCAGTCTCCAT+TGG 0.509239 7_1:-14844655 Msa1011060:CDS
GTTATATTGTTCTATCTATG+TGG 0.512537 7_1:+14849785 None:intergenic
GTCTGAAGGGATGCCATTGT+TGG 0.514922 7_1:+14849722 None:intergenic
TCAAACTTTGAAAAGTTGGA+AGG 0.520854 7_1:+14844470 None:intergenic
GACAGGATTTCAGCCAGTTG+TGG 0.527616 7_1:-14848210 Msa1011060:CDS
GATTTCAGCCAGTTGTGGAT+AGG 0.527897 7_1:-14848205 Msa1011060:CDS
AGGAGCAAATGAGAGAAGAT+GGG 0.535543 7_1:-14844529 Msa1011060:CDS
TAGCTGCAATGGCAATTGCT+TGG 0.536048 7_1:+14848385 None:intergenic
AACAACATGTAGGCAAGCAA+AGG 0.547194 7_1:+14843940 None:intergenic
CAAAACTATACCATTGCCAA+TGG 0.556022 7_1:+14844639 None:intergenic
TGCAAAATCCAAGCCAACAA+TGG 0.558415 7_1:-14849735 Msa1011060:exon
TCTTACAAGAAATTGAGGGT+TGG 0.559648 7_1:+14848337 None:intergenic
TAATGGTGCAGTAGCTGCAA+TGG 0.569156 7_1:+14848374 None:intergenic
ATTAAGAAGAGGATAGGTTG+TGG 0.579137 7_1:-14849858 None:intergenic
GTTGCCGCCGATAATAAGAC+AGG 0.584506 7_1:-14848227 Msa1011060:CDS
TTCTATTTACCTAAACAGAA+GGG 0.589934 7_1:+14844258 None:intergenic
AGCGCAGTCTCCATTGGCAA+TGG 0.595444 7_1:-14844649 Msa1011060:intron
AACATGTAGGCAAGCAAAGG+GGG 0.608948 7_1:+14843943 None:intergenic
GAAGTGTAGGTGAAGTCTGA+AGG 0.619544 7_1:+14849708 None:intergenic
GTGATTGTGTTGCAGAAGCA+TGG 0.631048 7_1:-14849590 Msa1011060:intron
AAGTGTAGGTGAAGTCTGAA+GGG 0.633332 7_1:+14849709 None:intergenic
AAGAGAGTTCTGTGAAGTGT+AGG 0.636649 7_1:+14849695 None:intergenic
GGAGCAAATGAGAGAAGATG+GGG 0.657624 7_1:-14844528 Msa1011060:CDS
AAATCCTGTCTTATTATCGG+CGG 0.658599 7_1:+14848223 None:intergenic
CAACATGTAGGCAAGCAAAG+GGG 0.661783 7_1:+14843942 None:intergenic
ATTGTGTTGCAGAAGCATGG+TGG 0.785934 7_1:-14849587 Msa1011060:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCATTTTCTAAAATTATTAT+TGG - chr7_1:14844618-14844637 Msa1011060:intron 10.0%
!! TTAAATCATTTATCAATAAA+AGG - chr7_1:14846077-14846096 Msa1011060:intron 10.0%
!!! TCATGAATAATATTTTTTTT+GGG + chr7_1:14846206-14846225 None:intergenic 10.0%
!!! TTCATGAATAATATTTTTTT+TGG + chr7_1:14846207-14846226 None:intergenic 10.0%
!! ATTGATATATTTATTTGTAT+TGG - chr7_1:14846340-14846359 Msa1011060:intron 10.0%
!!! AAAAATTTTACAAAAAAAAG+TGG + chr7_1:14846662-14846681 None:intergenic 10.0%
!!! AAAATTGGATAATTTTTTTA+AGG - chr7_1:14846695-14846714 Msa1011060:intron 10.0%
!! ACCTAAAAAATTATAATTTA+TGG - chr7_1:14846723-14846742 Msa1011060:intron 10.0%
!! CCTAAAAAATTATAATTTAT+GGG - chr7_1:14846724-14846743 Msa1011060:intron 10.0%
!! AAAAAAACATATTAAATTCA+AGG + chr7_1:14846768-14846787 None:intergenic 10.0%
!! AAAAAAAATTTCTTTATAGT+TGG - chr7_1:14846789-14846808 Msa1011060:intron 10.0%
!! TTAAATTAAAAAGAACTATA+TGG - chr7_1:14849668-14849687 Msa1011060:intron 10.0%
!!! TTAACCATTCATTATTTTAT+CGG + chr7_1:14845044-14845063 None:intergenic 15.0%
!! GTTAAAACATGTAAATTAAT+AGG + chr7_1:14845317-14845336 None:intergenic 15.0%
!!! CATGAATAATATTTTTTTTG+GGG + chr7_1:14846205-14846224 None:intergenic 15.0%
!! AAAAAATATTATTCATGAAG+TGG - chr7_1:14846208-14846227 Msa1011060:intron 15.0%
!!! TTTTGCAACTAAATTTATTT+GGG + chr7_1:14846283-14846302 None:intergenic 15.0%
!!! TTTTTGCAACTAAATTTATT+TGG + chr7_1:14846284-14846303 None:intergenic 15.0%
!!! ATAATTTTTATTGTTGAAAG+AGG + chr7_1:14846403-14846422 None:intergenic 15.0%
!! ATAATCATAGACAAATTAAA+TGG - chr7_1:14846430-14846449 Msa1011060:intron 15.0%
!!! CTTTTCAAATGTAAATAAAT+AGG + chr7_1:14846478-14846497 None:intergenic 15.0%
!! ACTAAAATTAACAAAATCTT+AGG + chr7_1:14846601-14846620 None:intergenic 15.0%
!! TAATCTCTAACAAAAAATTA+AGG + chr7_1:14846624-14846643 None:intergenic 15.0%
!!! CCCATAAATTATAATTTTTT+AGG + chr7_1:14846727-14846746 None:intergenic 15.0%
!!! CTTATTTTAAATTTGTTTTC+AGG - chr7_1:14847036-14847055 Msa1011060:intron 15.0%
!!! TTTTAACCAAAAAATTAAAG+TGG + chr7_1:14848377-14848396 None:intergenic 15.0%
!! ATATTCAAATATACACAAAA+GGG + chr7_1:14849010-14849029 None:intergenic 15.0%
!! TATATTCAAATATACACAAA+AGG + chr7_1:14849011-14849030 None:intergenic 15.0%
!! AAATATAATAAACTCTTCAT+CGG - chr7_1:14849372-14849391 Msa1011060:intron 15.0%
!! ACACATTAAATATAAGTTAA+AGG + chr7_1:14849607-14849626 None:intergenic 15.0%
!!! TCTTTTTTTTCCTTTAAAAT+TGG - chr7_1:14849642-14849661 Msa1011060:intron 15.0%
!!! AATTTAAGAACCAATTTTAA+AGG + chr7_1:14849655-14849674 None:intergenic 15.0%
!!! TTAGATTCTTATGTTTTCTA+AGG - chr7_1:14844728-14844747 Msa1011060:intron 20.0%
!!! ATGTTAGTGATTAATTTGTT+CGG + chr7_1:14845018-14845037 None:intergenic 20.0%
!! AAAACTGACACAAAAAATTA+TGG - chr7_1:14845962-14845981 Msa1011060:intron 20.0%
!! CAAAAAAAAAGAAAATCACA+GGG - chr7_1:14846010-14846029 Msa1011060:intron 20.0%
!! TTATCAATAAAAGGCTAAAA+TGG - chr7_1:14846086-14846105 Msa1011060:intron 20.0%
!! AGCTCAATGTTTATTATTTA+GGG + chr7_1:14846258-14846277 None:intergenic 20.0%
!! TAGCTCAATGTTTATTATTT+AGG + chr7_1:14846259-14846278 None:intergenic 20.0%
!! TTTGCAACTAAATTTATTTG+GGG + chr7_1:14846282-14846301 None:intergenic 20.0%
!! AGACAATTATTGATGAAATT+GGG - chr7_1:14846521-14846540 Msa1011060:intron 20.0%
!! TTAAAAACTGAGACAAAAAT+TGG - chr7_1:14846680-14846699 Msa1011060:intron 20.0%
!! TTATAATGACATAAAAAGCA+AGG + chr7_1:14847156-14847175 None:intergenic 20.0%
!! GTTCTATTTCAAAATAAGAT+TGG + chr7_1:14847716-14847735 None:intergenic 20.0%
!! TTAAATAAGACAATCCAAAT+AGG + chr7_1:14848103-14848122 None:intergenic 20.0%
!!! TAAGCTATTTCTATAACAAA+AGG + chr7_1:14848239-14848258 None:intergenic 20.0%
!!! TAATTAAATTGTTTCTCCAA+AGG - chr7_1:14848284-14848303 Msa1011060:intron 20.0%
!!! AATTAAATTGTTTCTCCAAA+GGG - chr7_1:14848285-14848304 Msa1011060:intron 20.0%
!!! GAATATCCACTTTAATTTTT+TGG - chr7_1:14848368-14848387 Msa1011060:CDS 20.0%
!!! TTTGGACAATATTTCTAAAT+TGG + chr7_1:14848488-14848507 None:intergenic 20.0%
!! ACATATACAAAAATGTGATT+AGG + chr7_1:14848782-14848801 None:intergenic 20.0%
!! CACATCCTTATTAATTATTA+CGG + chr7_1:14848842-14848861 None:intergenic 20.0%
!! TATTCAAATATACACAAAAG+GGG + chr7_1:14849009-14849028 None:intergenic 20.0%
! GTTATATTGTTCTATCTATG+TGG + chr7_1:14844012-14844031 None:intergenic 25.0%
! ACACTTCTATACATAAAACT+TGG - chr7_1:14844521-14844540 Msa1011060:CDS 25.0%
!!! TTCTTATGTTTTCTAAGGAT+AGG - chr7_1:14844733-14844752 Msa1011060:intron 25.0%
!!! TGTTAGTGATTAATTTGTTC+GGG + chr7_1:14845017-14845036 None:intergenic 25.0%
! TTTGCCGATAAAATAATGAA+TGG - chr7_1:14845037-14845056 Msa1011060:intron 25.0%
!! TGTATTTGATGACAAAAACA+CGG + chr7_1:14845126-14845145 None:intergenic 25.0%
! GAATGTATAACAAACAATCT+CGG - chr7_1:14845168-14845187 Msa1011060:intron 25.0%
!!! TAACGTCTTGTTTATGTTTT+TGG - chr7_1:14845238-14845257 Msa1011060:intron 25.0%
!! ATACTTTTGTCAGATATATC+AGG - chr7_1:14845380-14845399 Msa1011060:intron 25.0%
! TCAATCTTACAAGAAATTGA+GGG + chr7_1:14845464-14845483 None:intergenic 25.0%
! TTCAATCTTACAAGAAATTG+AGG + chr7_1:14845465-14845484 None:intergenic 25.0%
! GTAGGGGTAAAAATAATATA+GGG + chr7_1:14845731-14845750 None:intergenic 25.0%
! TGTAGGGGTAAAAATAATAT+AGG + chr7_1:14845732-14845751 None:intergenic 25.0%
!!! ATATCATAAACCGTCATTTT+TGG - chr7_1:14845752-14845771 Msa1011060:intron 25.0%
! ATTAAGAAAACCAATGTCAT+AGG - chr7_1:14845889-14845908 Msa1011060:intron 25.0%
! GCAAAAAAAAAGAAAATCAC+AGG - chr7_1:14846009-14846028 Msa1011060:intron 25.0%
! AATATTATTCATGAAGTGGT+CGG - chr7_1:14846212-14846231 Msa1011060:intron 25.0%
!!! TTGTATTGGTTTGATACTTT+CGG - chr7_1:14846354-14846373 Msa1011060:intron 25.0%
! CAGACAATTATTGATGAAAT+TGG - chr7_1:14846520-14846539 Msa1011060:intron 25.0%
! AAACAGGATATCAAAGAATT+TGG - chr7_1:14846934-14846953 Msa1011060:intron 25.0%
! AACAGGATATCAAAGAATTT+GGG - chr7_1:14846935-14846954 Msa1011060:intron 25.0%
!!! TTCTTTTCTTTCTAGAATCA+AGG + chr7_1:14847000-14847019 None:intergenic 25.0%
!! AACTCTGATAAAAAAGGTTT+TGG - chr7_1:14847066-14847085 Msa1011060:intron 25.0%
!!! ATTATCTTTGTTTTCTGGTT+TGG + chr7_1:14847097-14847116 None:intergenic 25.0%
! TGAACAAATAAAAACCAAAC+TGG + chr7_1:14847315-14847334 None:intergenic 25.0%
! TGGAATAGTATACTAATGAT+AGG - chr7_1:14847652-14847671 Msa1011060:intron 25.0%
! TTGTTTGAAGAAGATAACAA+TGG + chr7_1:14848037-14848056 None:intergenic 25.0%
! GTTATAGAAATAGCTTACAT+AGG - chr7_1:14848242-14848261 Msa1011060:intron 25.0%
! AATATTCATACACAAGTTAG+TGG - chr7_1:14848322-14848341 Msa1011060:intron 25.0%
!!! ATTTTTTTTTTAGCTTCCTG+AGG - chr7_1:14848403-14848422 Msa1011060:CDS 25.0%
! AGTCATCATATTTACCATTT+AGG - chr7_1:14848442-14848461 Msa1011060:intron 25.0%
! AGAAATATTGTCCAAAAGAA+AGG - chr7_1:14848492-14848511 Msa1011060:intron 25.0%
! GAAATATTGTCCAAAAGAAA+GGG - chr7_1:14848493-14848512 Msa1011060:intron 25.0%
! TCCTTATTAATTATTACGGT+CGG + chr7_1:14848838-14848857 None:intergenic 25.0%
! AGATTAATGATCTTCAGTTA+AGG - chr7_1:14848890-14848909 Msa1011060:intron 25.0%
! TCAGTTAAGGTTAAATTGAT+TGG - chr7_1:14848903-14848922 Msa1011060:intron 25.0%
!!! CTAAATTATTTTTTGGTTGC+AGG - chr7_1:14849221-14849240 Msa1011060:intron 25.0%
!! GTAATCAAACTTTGAAAAGT+TGG + chr7_1:14849331-14849350 None:intergenic 25.0%
! TTCTATTTACCTAAACAGAA+GGG + chr7_1:14849539-14849558 None:intergenic 25.0%
!! TGACTTTCATTTTCATCTTT+TGG + chr7_1:14849568-14849587 None:intergenic 25.0%
! TGGTTACACTTTTAGCATAA+TGG - chr7_1:14843956-14843975 Msa1011060:three_prime_UTR 30.0%
TATTGTTCTATCTATGTGGT+TGG + chr7_1:14844008-14844027 None:intergenic 30.0%
TATGTATGTATTATGCAGCA+TGG - chr7_1:14844396-14844415 Msa1011060:three_prime_UTR 30.0%
! TATTATTGGTGTCTTTGTGT+CGG - chr7_1:14844632-14844651 Msa1011060:intron 30.0%
ACTTGTACTACATGAAGAAA+TGG - chr7_1:14844690-14844709 Msa1011060:CDS 30.0%
CAATAAGTGAATTTGATGAG+TGG - chr7_1:14844884-14844903 Msa1011060:intron 30.0%
!! TTAGTGATTAATTTGTTCGG+GGG + chr7_1:14845015-14845034 None:intergenic 30.0%
!! GTTAGTGATTAATTTGTTCG+GGG + chr7_1:14845016-14845035 None:intergenic 30.0%
TGGTTTATATGATATCTGTG+AGG + chr7_1:14845200-14845219 None:intergenic 30.0%
! TTTTGTCAGATATATCAGGA+AGG - chr7_1:14845384-14845403 Msa1011060:intron 30.0%
TGGTTGAACAGAAAAACTAA+TGG + chr7_1:14845440-14845459 None:intergenic 30.0%
! CTGAAATCCTGTCTTATTAT+CGG + chr7_1:14845577-14845596 None:intergenic 30.0%
AAAGTTCGCTATATTTGCAA+GGG + chr7_1:14845699-14845718 None:intergenic 30.0%
TGACGGTTTATGATATTGTA+GGG + chr7_1:14845748-14845767 None:intergenic 30.0%
ATGACGGTTTATGATATTGT+AGG + chr7_1:14845749-14845768 None:intergenic 30.0%
ATGTTAAAAAATGCCGATGT+TGG - chr7_1:14845792-14845811 Msa1011060:intron 30.0%
AAAGGCTAAAATGGAAGTTA+AGG - chr7_1:14846095-14846114 Msa1011060:intron 30.0%
! TGTTTATTATTTAGGGTAGC+CGG + chr7_1:14846251-14846270 None:intergenic 30.0%
!!! CCTGAATTATCTTTGTTTTC+TGG + chr7_1:14847102-14847121 None:intergenic 30.0%
CCAGAAAACAAAGATAATTC+AGG - chr7_1:14847099-14847118 Msa1011060:intron 30.0%
!!! TTTTTTGAACAGTTCAACTG+TGG + chr7_1:14847264-14847283 None:intergenic 30.0%
ACTGTTCAAAAAACCATTCA+TGG - chr7_1:14847271-14847290 Msa1011060:intron 30.0%
!! ACATGTCCATAAGTTGTTTT+CGG - chr7_1:14848135-14848154 Msa1011060:intron 30.0%
AATAAGCCGAAAACAACTTA+TGG + chr7_1:14848144-14848163 None:intergenic 30.0%
ATTTACCATTTAGGAATTCC+TGG - chr7_1:14848451-14848470 Msa1011060:intron 30.0%
!! ATATTGACTACCCTTTCTTT+TGG + chr7_1:14848506-14848525 None:intergenic 30.0%
TATTATCACTAGCAAGTCTT+TGG - chr7_1:14848543-14848562 Msa1011060:intron 30.0%
ACCGACCGTAATAATTAATA+AGG - chr7_1:14848834-14848853 Msa1011060:intron 30.0%
! TCAAACTTTGAAAAGTTGGA+AGG + chr7_1:14849327-14849346 None:intergenic 30.0%
CATACTGCATAACAGTAATA+TGG - chr7_1:14849509-14849528 Msa1011060:CDS 30.0%
GTTCTATTTACCTAAACAGA+AGG + chr7_1:14849540-14849559 None:intergenic 30.0%
AAAGAACTATATGGTCGTTA+TGG - chr7_1:14849677-14849696 Msa1011060:CDS 30.0%
TAAGTTGTAACAGAGAAGAA+GGG + chr7_1:14849737-14849756 None:intergenic 30.0%
! AGTACTTTTCGTAGAAGAGA+AGG - chr7_1:14844261-14844280 Msa1011060:intron 35.0%
CTTTAGATTGAATGTGTGTC+TGG - chr7_1:14844422-14844441 Msa1011060:three_prime_UTR 35.0%
! GTTTTATGTGTCATACACTG+TGG + chr7_1:14844489-14844508 None:intergenic 35.0%
! TGGTTCATCTTGTTGGTTAT+TGG - chr7_1:14844841-14844860 Msa1011060:intron 35.0%
! GGTTCATCTTGTTGGTTATT+GGG - chr7_1:14844842-14844861 Msa1011060:intron 35.0%
! GTTCATCTTGTTGGTTATTG+GGG - chr7_1:14844843-14844862 Msa1011060:intron 35.0%
CAAGTACGAAAACACTATCA+GGG + chr7_1:14845149-14845168 None:intergenic 35.0%
TCAAGTACGAAAACACTATC+AGG + chr7_1:14845150-14845169 None:intergenic 35.0%
TAGTCAAGATTGTTCATGTG+TGG + chr7_1:14845220-14845239 None:intergenic 35.0%
TCTTACAAGAAATTGAGGGT+TGG + chr7_1:14845460-14845479 None:intergenic 35.0%
! CATATCAAGGGTATATTCTC+AGG + chr7_1:14845542-14845561 None:intergenic 35.0%
CTGAGAATATACCCTTGATA+TGG - chr7_1:14845540-14845559 Msa1011060:intron 35.0%
! AAATCCTGTCTTATTATCGG+CGG + chr7_1:14845574-14845593 None:intergenic 35.0%
! TATCAGTTTGTCTACCCTTT+TGG - chr7_1:14845621-14845640 Msa1011060:intron 35.0%
CAAAGTTCGCTATATTTGCA+AGG + chr7_1:14845700-14845719 None:intergenic 35.0%
GACGGTTTATGATATTGTAG+GGG + chr7_1:14845747-14845766 None:intergenic 35.0%
ACATCAGAGACCAAAAATGA+CGG + chr7_1:14845765-14845784 None:intergenic 35.0%
!!! TCATTTTTGGTCTCTGATGT+TGG - chr7_1:14845765-14845784 Msa1011060:intron 35.0%
CACCAAATGTTTACCAACAT+CGG + chr7_1:14845808-14845827 None:intergenic 35.0%
TCTGTTGAAAAAAGCTGATG+TGG + chr7_1:14845936-14845955 None:intergenic 35.0%
!!! TTTTTTGCTTTTTACCCCTG+CGG + chr7_1:14845997-14846016 None:intergenic 35.0%
TCAAAGTTCGTTATATCTGC+AGG - chr7_1:14846040-14846059 Msa1011060:intron 35.0%
CAAAGTTCGTTATATCTGCA+GGG - chr7_1:14846041-14846060 Msa1011060:intron 35.0%
AAAGTTCGTTATATCTGCAG+GGG - chr7_1:14846042-14846061 Msa1011060:intron 35.0%
! AGCTCCTTTTTCTTTTGTCA+TGG - chr7_1:14846120-14846139 Msa1011060:intron 35.0%
! GCTCCTTTTTCTTTTGTCAT+GGG - chr7_1:14846121-14846140 Msa1011060:intron 35.0%
! CTCCTTTTTCTTTTGTCATG+GGG - chr7_1:14846122-14846141 Msa1011060:intron 35.0%
!!! TATTTTTTTTGGGGTAGCCA+AGG + chr7_1:14846196-14846215 None:intergenic 35.0%
GGTCGGTATGTATTTATATC+CGG - chr7_1:14846229-14846248 Msa1011060:intron 35.0%
AATCGCTATTTAGAAACGCT+GGG + chr7_1:14846565-14846584 None:intergenic 35.0%
AAATCGCTATTTAGAAACGC+TGG + chr7_1:14846566-14846585 None:intergenic 35.0%
! CTCGCAAAAATTTTATGCAG+GGG + chr7_1:14846815-14846834 None:intergenic 35.0%
! GCTCGCAAAAATTTTATGCA+GGG + chr7_1:14846816-14846835 None:intergenic 35.0%
! AGCTCGCAAAAATTTTATGC+AGG + chr7_1:14846817-14846836 None:intergenic 35.0%
AGTGATTGAAGGTCAAGATA+AGG - chr7_1:14846852-14846871 Msa1011060:CDS 35.0%
TGATATCCTGTTTGCTTGTT+GGG + chr7_1:14846927-14846946 None:intergenic 35.0%
TTGATATCCTGTTTGCTTGT+TGG + chr7_1:14846928-14846947 None:intergenic 35.0%
TGCTGCAACTCTGATAAAAA+AGG - chr7_1:14847060-14847079 Msa1011060:intron 35.0%
!!! ATCTTTGTTTTCTGGTTTGG+AGG + chr7_1:14847094-14847113 None:intergenic 35.0%
AAAGATAATTCAGGCAACTG+AGG - chr7_1:14847108-14847127 Msa1011060:intron 35.0%
! TCAACAAGTTGAACCATGAA+TGG + chr7_1:14847287-14847306 None:intergenic 35.0%
CAAATAAAAACCAAACTGGC+CGG + chr7_1:14847311-14847330 None:intergenic 35.0%
ACAACACATACAACACATCT+GGG + chr7_1:14847431-14847450 None:intergenic 35.0%
GTATACTATTCCATTCTTCC+AGG + chr7_1:14847645-14847664 None:intergenic 35.0%
! GATTTTACCAATGTCAAGAG+TGG - chr7_1:14847674-14847693 Msa1011060:intron 35.0%
!! ATAATATCATGAGCGTTGGA+GGG + chr7_1:14848007-14848026 None:intergenic 35.0%
!! AATAATATCATGAGCGTTGG+AGG + chr7_1:14848008-14848027 None:intergenic 35.0%
TCCAACGCTCATGATATTAT+TGG - chr7_1:14848007-14848026 Msa1011060:intron 35.0%
ACCAATAATATCATGAGCGT+TGG + chr7_1:14848011-14848030 None:intergenic 35.0%
AAGTTTAGATGAATACCAGC+TGG - chr7_1:14848077-14848096 Msa1011060:intron 35.0%
AGCTTACATAGGCACTAATA+CGG - chr7_1:14848253-14848272 Msa1011060:intron 35.0%
TTCATACACAAGTTAGTGGT+AGG - chr7_1:14848326-14848345 Msa1011060:intron 35.0%
CAAGTTAGTGGTAGGAAATA+TGG - chr7_1:14848334-14848353 Msa1011060:intron 35.0%
TCCTGAGGATATTTAGCAAA+AGG - chr7_1:14848418-14848437 Msa1011060:intron 35.0%
! ACCTTTTGCTAAATATCCTC+AGG + chr7_1:14848422-14848441 None:intergenic 35.0%
AAATTGGAGATATCTTCACC+AGG + chr7_1:14848472-14848491 None:intergenic 35.0%
AAATATACACAAAAGGGGTC+TGG + chr7_1:14849004-14849023 None:intergenic 35.0%
CAAAACTATACCATTGCCAA+TGG + chr7_1:14849158-14849177 None:intergenic 35.0%
! CATTGGCAATGGTATAGTTT+TGG - chr7_1:14849156-14849175 Msa1011060:intron 35.0%
! AAGTTTTACACCTTGACTAC+AGG - chr7_1:14849245-14849264 Msa1011060:intron 35.0%
AAGTTGGAAGGATTCTACTA+TGG + chr7_1:14849315-14849334 None:intergenic 35.0%
! TGCAGTTATGGTTGTTACTT+TGG - chr7_1:14849463-14849482 Msa1011060:intron 35.0%
AAGTTGTAACAGAGAAGAAG+GGG + chr7_1:14849736-14849755 None:intergenic 35.0%
GTAAGTTGTAACAGAGAAGA+AGG + chr7_1:14849738-14849757 None:intergenic 35.0%
TGTTCTATCTATGTGGTTGG+AGG + chr7_1:14844005-14844024 None:intergenic 40.0%
TGCAAAATCCAAGCCAACAA+TGG - chr7_1:14844059-14844078 Msa1011060:intron 40.0%
AAGTGTAGGTGAAGTCTGAA+GGG + chr7_1:14844088-14844107 None:intergenic 40.0%
AAGAGAGTTCTGTGAAGTGT+AGG + chr7_1:14844102-14844121 None:intergenic 40.0%
!! TAATGCATGAGAGTACCTGA+GGG + chr7_1:14844137-14844156 None:intergenic 40.0%
!! TTAATGCATGAGAGTACCTG+AGG + chr7_1:14844138-14844157 None:intergenic 40.0%
GGTACTCTCATGCATTAACT+TGG - chr7_1:14844140-14844159 Msa1011060:intron 40.0%
GAACTGTCATCTTCATCAAC+AGG - chr7_1:14844312-14844331 Msa1011060:three_prime_UTR 40.0%
! ATCAACAGGTTGCTTTCTCA+AGG - chr7_1:14844326-14844345 Msa1011060:three_prime_UTR 40.0%
!! GTCGGTGTCAATATTGTATC+CGG - chr7_1:14844650-14844669 Msa1011060:CDS 40.0%
GTAAAGTACAACACGAACAC+CGG + chr7_1:14844672-14844691 None:intergenic 40.0%
GAATCCATGGTCGTTAATGT+AGG - chr7_1:14844785-14844804 Msa1011060:intron 40.0%
TTGCACAATGCATCTTCATC+AGG + chr7_1:14844821-14844840 None:intergenic 40.0%
GATGAAGATGCATTGTGCAA+TGG - chr7_1:14844821-14844840 Msa1011060:intron 40.0%
TGTGCAATGGTTCATCTTGT+TGG - chr7_1:14844834-14844853 Msa1011060:intron 40.0%
!! TGTTGGTTATTGGGGTGTTT+TGG - chr7_1:14844851-14844870 Msa1011060:intron 40.0%
ACACCGAAGGAATTCTATGT+AGG - chr7_1:14844950-14844969 Msa1011060:intron 40.0%
CCTCCTACATAGAATTCCTT+CGG + chr7_1:14844956-14844975 None:intergenic 40.0%
!! CAAAAACACGGAGAAGTGTT+TGG + chr7_1:14845114-14845133 None:intergenic 40.0%
TATTTAGGAAAGACAGCAGG+TGG + chr7_1:14845505-14845524 None:intergenic 40.0%
CAGTATTTAGGAAAGACAGC+AGG + chr7_1:14845508-14845527 None:intergenic 40.0%
GACGTCAGGAATCAGTATTT+AGG + chr7_1:14845520-14845539 None:intergenic 40.0%
! AGTTTGTCTACCCTTTTGGA+TGG - chr7_1:14845625-14845644 Msa1011060:intron 40.0%
! TGCCGATGTTGGTAAACATT+TGG - chr7_1:14845803-14845822 Msa1011060:intron 40.0%
!! TTGGTAAACATTTGGTGACG+TGG - chr7_1:14845811-14845830 Msa1011060:intron 40.0%
CTCCCCATGACAAAAGAAAA+AGG + chr7_1:14846127-14846146 None:intergenic 40.0%
! TTTTCTTTTGTCATGGGGAG+TGG - chr7_1:14846127-14846146 Msa1011060:intron 40.0%
! TTTCTTTTGTCATGGGGAGT+GGG - chr7_1:14846128-14846147 Msa1011060:intron 40.0%
AATGATCCCAACAAGCAAAC+AGG - chr7_1:14846918-14846937 Msa1011060:intron 40.0%
TGTAAACCTCTAACCTGTTC+AGG + chr7_1:14846964-14846983 None:intergenic 40.0%
AAACGAACCAGACAGCAAAT+TGG - chr7_1:14847184-14847203 Msa1011060:intron 40.0%
GTTCAACTGTGGTTTCTTCT+TGG + chr7_1:14847253-14847272 None:intergenic 40.0%
!! CATGGTTCAACTTGTTGAAC+CGG - chr7_1:14847289-14847308 Msa1011060:intron 40.0%
!! TTTTCCCAAAGGCACATAGA+TGG + chr7_1:14847342-14847361 None:intergenic 40.0%
! TGTGCCTTTGGGAAAATACT+TGG - chr7_1:14847346-14847365 Msa1011060:intron 40.0%
! GTGCCTTTGGGAAAATACTT+GGG - chr7_1:14847347-14847366 Msa1011060:intron 40.0%
! TCACCCAAGTATTTTCCCAA+AGG + chr7_1:14847353-14847372 None:intergenic 40.0%
TGTCACCGTGACATTAAATC+TGG - chr7_1:14847378-14847397 Msa1011060:intron 40.0%
GTCACCGTGACATTAAATCT+GGG - chr7_1:14847379-14847398 Msa1011060:intron 40.0%
ATTAAATCTGGGCCACACAA+AGG - chr7_1:14847390-14847409 Msa1011060:intron 40.0%
CACAACACATACAACACATC+TGG + chr7_1:14847432-14847451 None:intergenic 40.0%
GATGTGTTGTATGTGTTGTG+TGG - chr7_1:14847432-14847451 Msa1011060:intron 40.0%
GTCACCGTGACATTAAATCT+GGG + chr7_1:14847379-14847398 None:intergenic 40.0%
TGTCACCGTGACATTAAATC+TGG + chr7_1:14847378-14847397 None:intergenic 40.0%
! TCTGTTAGGCTATGGATTAC+AGG - chr7_1:14847860-14847879 Msa1011060:intron 40.0%
ATGTAGTTGAATGAGACAGC+AGG - chr7_1:14847888-14847907 Msa1011060:intron 40.0%
TACAAACCACTAAGACCCTT+TGG + chr7_1:14848303-14848322 None:intergenic 40.0%
CTTCACCAGGAATTCCTAAA+TGG + chr7_1:14848459-14848478 None:intergenic 40.0%
ATTGTGTTGCCAAGTTGTTG+AGG - chr7_1:14848863-14848882 Msa1011060:intron 40.0%
TGGATTACGAGAGTTTGACA+AGG + chr7_1:14848984-14849003 None:intergenic 40.0%
AGGAGCAAATGAGAGAAGAT+GGG - chr7_1:14849265-14849284 Msa1011060:intron 40.0%
CGTTGAAGTCTTTGCAGTTA+TGG - chr7_1:14849451-14849470 Msa1011060:intron 40.0%
TATGGCAAACCCTTCTGTTT+AGG - chr7_1:14849527-14849546 Msa1011060:CDS 40.0%
TATGGATGTGATGTGGAAAG+TGG - chr7_1:14849695-14849714 Msa1011060:CDS 40.0%
GAAGTGTAGGTGAAGTCTGA+AGG + chr7_1:14844089-14844108 None:intergenic 45.0%
CTTTCAGAACTCTTTCCCTC+AGG - chr7_1:14844119-14844138 Msa1011060:intron 45.0%
GTGATTGTGTTGCAGAAGCA+TGG - chr7_1:14844204-14844223 Msa1011060:intron 45.0%
! ATTGTGTTGCAGAAGCATGG+TGG - chr7_1:14844207-14844226 Msa1011060:intron 45.0%
AAGCAGGTTCAGTAAGCTCT+TGG + chr7_1:14844765-14844784 None:intergenic 45.0%
ACTGAACCTGCTTGAATCCA+TGG - chr7_1:14844772-14844791 Msa1011060:intron 45.0%
TAACGACCATGGATTCAAGC+AGG + chr7_1:14844781-14844800 None:intergenic 45.0%
TCTGCCTACATTAACGACCA+TGG + chr7_1:14844792-14844811 None:intergenic 45.0%
TGGTTAAAGTCAGTCCCTGA+AGG - chr7_1:14844904-14844923 Msa1011060:intron 45.0%
AAGGAGTAGCTCAGTGGTAT+AGG - chr7_1:14844923-14844942 Msa1011060:intron 45.0%
CCGAAGGAATTCTATGTAGG+AGG - chr7_1:14844953-14844972 Msa1011060:intron 45.0%
!! GTGATTAATTTGTTCGGGGG+AGG + chr7_1:14845012-14845031 None:intergenic 45.0%
TAGCTGCAATGGCAATTGCT+TGG + chr7_1:14845412-14845431 None:intergenic 45.0%
TAATGGTGCAGTAGCTGCAA+TGG + chr7_1:14845423-14845442 None:intergenic 45.0%
GATTTCAGCCAGTTGTGGAT+AGG - chr7_1:14845589-14845608 Msa1011060:intron 45.0%
CCATCTTTCCTATCCACAAC+TGG + chr7_1:14845600-14845619 None:intergenic 45.0%
CCAGTTGTGGATAGGAAAGA+TGG - chr7_1:14845597-14845616 Msa1011060:intron 45.0%
CTTCAATCACTACTTCCCAG+CGG + chr7_1:14846843-14846862 None:intergenic 45.0%
AGAATTTGGGTCACCTGAAC+AGG - chr7_1:14846948-14846967 Msa1011060:intron 45.0%
GAACCAGACAGCAAATTGGT+GGG - chr7_1:14847188-14847207 Msa1011060:intron 45.0%
TTGGTGGGACTGTTTGTTCT+TGG - chr7_1:14847203-14847222 Msa1011060:intron 45.0%
! TGGTTTCTTCTTGGTTCGAG+CGG + chr7_1:14847244-14847263 None:intergenic 45.0%
GTGGCCCAGATTTAATGTCA+CGG + chr7_1:14847484-14847503 None:intergenic 45.0%
CACAACACAACACCTTTGTG+TGG + chr7_1:14847405-14847424 None:intergenic 45.0%
!! CACAAAGGTGTTGTGTTGTG+TGG - chr7_1:14847405-14847424 Msa1011060:intron 45.0%
CACATTGCCACACAACATCT+GGG + chr7_1:14847458-14847477 None:intergenic 45.0%
ACACATTGCCACACAACATC+TGG + chr7_1:14847459-14847478 None:intergenic 45.0%
GTGGCCCAGATTTAATGTCA+CGG - chr7_1:14847484-14847503 Msa1011060:intron 45.0%
! NNNNNTTCCCGGCTTTGTCC+TGG - chr7_1:14847624-14847643 Msa1011060:intron 45.0%
CTACATGCCACTCTTGACAT+TGG + chr7_1:14847684-14847703 None:intergenic 45.0%
! TGAATACCAGCTGGCCTATT+TGG - chr7_1:14848086-14848105 Msa1011060:intron 45.0%
GTTTCTCCAAAGGGTCTTAG+TGG - chr7_1:14848294-14848313 Msa1011060:intron 45.0%
AATCTGCGACCTCAACAACT+TGG + chr7_1:14848875-14848894 None:intergenic 45.0%
! CTTTTCCGTCAATTTCACGC+TGG + chr7_1:14849069-14849088 None:intergenic 45.0%
! TCAATTCGAGTTCGTTGCTC+AGG - chr7_1:14849096-14849115 Msa1011060:intron 45.0%
AGAGCATGTCGAGTGTAGTT+TGG + chr7_1:14849124-14849143 None:intergenic 45.0%
CTCATTTGCTCCTGTAGTCA+AGG + chr7_1:14849258-14849277 None:intergenic 45.0%
CAGGAGCAAATGAGAGAAGA+TGG - chr7_1:14849264-14849283 Msa1011060:intron 45.0%
GGAGCAAATGAGAGAAGATG+GGG - chr7_1:14849266-14849285 Msa1011060:intron 45.0%
TGGTCGTTATGGATGTGATG+TGG - chr7_1:14849688-14849707 Msa1011060:CDS 45.0%
!!! TTAAATTCTAAATTATTTTT+TGG - chr7_1:14849214-14849233 Msa1011060:intron 5.0%
! AAGGGATGCCATTGTTGGCT+TGG + chr7_1:14844070-14844089 None:intergenic 50.0%
GTCTGAAGGGATGCCATTGT+TGG + chr7_1:14844075-14844094 None:intergenic 50.0%
GGTCTGACGTTATGTGTCTG+TGG - chr7_1:14844443-14844462 Msa1011060:three_prime_UTR 50.0%
ACCACTGAGCTACTCCTTCA+GGG + chr7_1:14844921-14844940 None:intergenic 50.0%
TACCACTGAGCTACTCCTTC+AGG + chr7_1:14844922-14844941 None:intergenic 50.0%
TGGTATAGGTTCGACACCGA+AGG - chr7_1:14844937-14844956 Msa1011060:intron 50.0%
GGGTATATTCTCAGGACGTC+AGG + chr7_1:14845534-14845553 None:intergenic 50.0%
CGGCAACTGAGCCATATCAA+GGG + chr7_1:14845554-14845573 None:intergenic 50.0%
GTTGCCGCCGATAATAAGAC+AGG - chr7_1:14845567-14845586 Msa1011060:intron 50.0%
GACAGGATTTCAGCCAGTTG+TGG - chr7_1:14845584-14845603 Msa1011060:intron 50.0%
! TGTCTACCCTTTTGGATGGC+AGG - chr7_1:14845629-14845648 Msa1011060:intron 50.0%
TGCTCACCTGCCATCCAAAA+GGG + chr7_1:14845638-14845657 None:intergenic 50.0%
ATGCTCACCTGCCATCCAAA+AGG + chr7_1:14845639-14845658 None:intergenic 50.0%
TGACGTGGCAAGATGTGACT+GGG - chr7_1:14845826-14845845 Msa1011060:intron 50.0%
CCACACAGCACCTATGACAT+TGG + chr7_1:14845902-14845921 None:intergenic 50.0%
! CCAATGTCATAGGTGCTGTG+TGG - chr7_1:14845899-14845918 Msa1011060:intron 50.0%
AAAGCTGATGTGGCTGACGT+TGG + chr7_1:14845926-14845945 None:intergenic 50.0%
CGCTGGGAAGTAGTGATTGA+AGG - chr7_1:14846841-14846860 Msa1011060:intron 50.0%
!! GTTACGCTGACGTTTTCGAG+TGG + chr7_1:14846898-14846917 None:intergenic 50.0%
CGAACCAGACAGCAAATTGG+TGG - chr7_1:14847187-14847206 Msa1011060:intron 50.0%
!! AGTCCCACCAATTTGCTGTC+TGG + chr7_1:14847194-14847213 None:intergenic 50.0%
! ACTTGTTGAACCGGCCAGTT+TGG - chr7_1:14847298-14847317 Msa1011060:intron 50.0%
AGCAGCCATCTATGTGCCTT+TGG - chr7_1:14847334-14847353 Msa1011060:intron 50.0%
GCAGCCATCTATGTGCCTTT+GGG - chr7_1:14847335-14847354 Msa1011060:intron 50.0%
GTGTGGCAATGTGTGTTGTG+TGG - chr7_1:14847465-14847484 Msa1011060:intron 50.0%
CATTCTTCCAGGACAAAGCC+GGG + chr7_1:14847634-14847653 None:intergenic 50.0%
CCATTCTTCCAGGACAAAGC+CGG + chr7_1:14847635-14847654 None:intergenic 50.0%
ATAGAACTGCTATGCTCCCC+CGG - chr7_1:14847729-14847748 Msa1011060:intron 50.0%
CACTACTGGCAAAGACCATC+CGG + chr7_1:14847792-14847811 None:intergenic 50.0%
TGCTGCGTTCTGTTAGGCTA+TGG - chr7_1:14847852-14847871 Msa1011060:intron 50.0%
AGTTGAATGAGACAGCAGGC+AGG - chr7_1:14847892-14847911 Msa1011060:intron 50.0%
ACCACCTGCACCTCACATTT+CGG + chr7_1:14847935-14847954 None:intergenic 50.0%
GACAATCCAAATAGGCCAGC+TGG + chr7_1:14848095-14848114 None:intergenic 50.0%
TGTCGCCAGCGTGAAATTGA+CGG - chr7_1:14849061-14849080 Msa1011060:intron 50.0%
CCTGGACGGACATGAAATCT+AGG + chr7_1:14849795-14849814 None:intergenic 50.0%
CCTAGATTTCATGTCCGTCC+AGG - chr7_1:14849792-14849811 Msa1011060:five_prime_UTR 50.0%
TCCCTGAAGGAGTAGCTCAG+TGG - chr7_1:14844917-14844936 Msa1011060:intron 55.0%
GCGGCAACTGAGCCATATCA+AGG + chr7_1:14845555-14845574 None:intergenic 55.0%
GTGACGTGGCAAGATGTGAC+TGG - chr7_1:14845825-14845844 Msa1011060:intron 55.0%
GACGTGGCAAGATGTGACTG+GGG - chr7_1:14845827-14845846 Msa1011060:intron 55.0%
ATTATGGTCGCTGACACCGC+AGG - chr7_1:14845978-14845997 Msa1011060:intron 55.0%
TTATGGTCGCTGACACCGCA+GGG - chr7_1:14845979-14845998 Msa1011060:intron 55.0%
! TTTTGTCATGGGGAGTGGGC+AGG - chr7_1:14846132-14846151 Msa1011060:intron 55.0%
! AGGGGCGTAGCCCTTCATAT+GGG - chr7_1:14846162-14846181 Msa1011060:intron 55.0%
GCGTAGCCCTTCATATGGGA+GGG - chr7_1:14846166-14846185 Msa1011060:intron 55.0%
CGTAGCCCTTCATATGGGAG+GGG - chr7_1:14846167-14846186 Msa1011060:intron 55.0%
GGCTACCCCTCCCATATGAA+GGG + chr7_1:14846175-14846194 None:intergenic 55.0%
AGGCTACCCCTCCCATATGA+AGG + chr7_1:14846176-14846195 None:intergenic 55.0%
TCATATGGGAGGGGTAGCCT+TGG - chr7_1:14846176-14846195 Msa1011060:intron 55.0%
! ATTTTTGCGAGCTTCGCCGC+TGG - chr7_1:14846824-14846843 Msa1011060:intron 55.0%
! TTTTTGCGAGCTTCGCCGCT+GGG - chr7_1:14846825-14846844 Msa1011060:intron 55.0%
GGGTCACCTGAACAGGTTAG+AGG - chr7_1:14846955-14846974 Msa1011060:intron 55.0%
TGTGTGGCCCAGATGTTGTG+TGG - chr7_1:14847448-14847467 Msa1011060:intron 55.0%
! CCGGCTTTGTCCTGGAAGAA+TGG - chr7_1:14847632-14847651 Msa1011060:intron 55.0%
! ATCCTCCCCACTGGCTGTAT+GGG - chr7_1:14847814-14847833 Msa1011060:intron 55.0%
AACTCGCCCATACAGCCAGT+GGG + chr7_1:14847823-14847842 None:intergenic 55.0%
CTAACAGAACGCAGCAGCGA+GGG + chr7_1:14847848-14847867 None:intergenic 55.0%
TTCCGCTGTGCCGAAATGTG+AGG - chr7_1:14847922-14847941 Msa1011060:intron 55.0%
CACCTCACATTTCGGCACAG+CGG + chr7_1:14847927-14847946 None:intergenic 55.0%
TGTGCCGAAATGTGAGGTGC+AGG - chr7_1:14847928-14847947 Msa1011060:intron 55.0%
! AGGTGGTGATGATCACCCCT+GGG - chr7_1:14847948-14847967 Msa1011060:intron 55.0%
! GGTCCTAGAGTGCCTGTCAA+GGG + chr7_1:14847986-14848005 None:intergenic 55.0%
TTTCACGCTGGCGACACAGA+TGG + chr7_1:14849057-14849076 None:intergenic 55.0%
AGCGCAGTCTCCATTGGCAA+TGG - chr7_1:14849145-14849164 Msa1011060:intron 55.0%
GAGGAATGACGCTACCTGGA+CGG + chr7_1:14849809-14849828 None:intergenic 55.0%
TCCAGGTAGCGTCATTCCTC+TGG - chr7_1:14849809-14849828 Msa1011060:five_prime_UTR 55.0%
ACCAGAGGAATGACGCTACC+TGG + chr7_1:14849813-14849832 None:intergenic 55.0%
GTGGCAAGATGTGACTGGGG+TGG - chr7_1:14845830-14845849 Msa1011060:intron 60.0%
GCAAGATGTGACTGGGGTGG+TGG - chr7_1:14845833-14845852 Msa1011060:intron 60.0%
! AGATGTGACTGGGGTGGTGG+TGG - chr7_1:14845836-14845855 Msa1011060:intron 60.0%
TATGGTCGCTGACACCGCAG+GGG - chr7_1:14845980-14845999 Msa1011060:intron 60.0%
GGAGTGGGCAGGAAGTAGCA+GGG - chr7_1:14846143-14846162 Msa1011060:intron 60.0%
GAGTGGGCAGGAAGTAGCAG+GGG - chr7_1:14846144-14846163 Msa1011060:intron 60.0%
! CAGGGGCGTAGCCCTTCATA+TGG - chr7_1:14846161-14846180 Msa1011060:intron 60.0%
GGCGTAGCCCTTCATATGGG+AGG - chr7_1:14846165-14846184 Msa1011060:intron 60.0%
AAGCGTGGTAGGCCTATGCC+GGG + chr7_1:14847750-14847769 None:intergenic 60.0%
GAAGCGTGGTAGGCCTATGC+CGG + chr7_1:14847751-14847770 None:intergenic 60.0%
AGTGGGGAGGATGGCACTAC+TGG + chr7_1:14847806-14847825 None:intergenic 60.0%
AGTAGTGCCATCCTCCCCAC+TGG - chr7_1:14847805-14847824 Msa1011060:intron 60.0%
CATACAGCCAGTGGGGAGGA+TGG + chr7_1:14847815-14847834 None:intergenic 60.0%
! CATCCTCCCCACTGGCTGTA+TGG - chr7_1:14847813-14847832 Msa1011060:intron 60.0%
ACTCGCCCATACAGCCAGTG+GGG + chr7_1:14847822-14847841 None:intergenic 60.0%
CAACTCGCCCATACAGCCAG+TGG + chr7_1:14847824-14847843 None:intergenic 60.0%
CCTAACAGAACGCAGCAGCG+AGG + chr7_1:14847849-14847868 None:intergenic 60.0%
CCTCGCTGCTGCGTTCTGTT+AGG - chr7_1:14847846-14847865 Msa1011060:intron 60.0%
GCCGAAATGTGAGGTGCAGG+TGG - chr7_1:14847931-14847950 Msa1011060:intron 60.0%
! CAGGTGGTGATGATCACCCC+TGG - chr7_1:14847947-14847966 Msa1011060:intron 60.0%
TATGCGCTAGCGCCCTTGAC+AGG - chr7_1:14847971-14847990 Msa1011060:intron 60.0%
! GGGTCCTAGAGTGCCTGTCA+AGG + chr7_1:14847987-14848006 None:intergenic 60.0%
GCTCTCAGCGCAGTCTCCAT+TGG - chr7_1:14849139-14849158 Msa1011060:intron 60.0%
GAATGCAACGCGCTCACCAG+AGG + chr7_1:14849828-14849847 None:intergenic 60.0%
GGGAGTGGGCAGGAAGTAGC+AGG - chr7_1:14846142-14846161 Msa1011060:intron 65.0%
CTGCTATGCTCCCCCGGCAT+AGG - chr7_1:14847735-14847754 Msa1011060:intron 65.0%
AGCGTGGTAGGCCTATGCCG+GGG + chr7_1:14847749-14847768 None:intergenic 65.0%
! AGGGCGCTAGCGCATACCCA+GGG + chr7_1:14847967-14847986 None:intergenic 65.0%
!! AAGGGCGCTAGCGCATACCC+AGG + chr7_1:14847968-14847987 None:intergenic 65.0%
GCGCCCTTGACAGGCACTCT+AGG - chr7_1:14847980-14847999 Msa1011060:intron 65.0%
GCGTGGTAGGCCTATGCCGG+GGG + chr7_1:14847748-14847767 None:intergenic 70.0%
CCTACCACGCTTCGCGCCTG+CGG - chr7_1:14847758-14847777 Msa1011060:intron 70.0%
CCATCCGGCGAAAACGCCGC+AGG + chr7_1:14847777-14847796 None:intergenic 70.0%
! CCTGCGGCGTTTTCGCCGGA+TGG - chr7_1:14847774-14847793 Msa1011060:intron 70.0%
CGCCCATACAGCCAGTGGGG+AGG + chr7_1:14847819-14847838 None:intergenic 70.0%
GGGCGCTAGCGCATACCCAG+GGG + chr7_1:14847966-14847985 None:intergenic 70.0%
CCGCAGGCGCGAAGCGTGGT+AGG + chr7_1:14847761-14847780 None:intergenic 75.0%
AACGCCGCAGGCGCGAAGCG+TGG + chr7_1:14847765-14847784 None:intergenic 75.0%
! CGCGCCTGCGGCGTTTTCGC+CGG - chr7_1:14847770-14847789 Msa1011060:intron 75.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 14843951 14849865 14843951 ID=Msa1011060;Name=Msa1011060
chr7_1 mRNA 14843951 14849865 14843951 ID=Msa1011060-mRNA-1;Parent=Msa1011060;Name=Msa1011060-mRNA-1;_AED=0.17;_eAED=0.17;_QI=127|0.75|0.66|1|0.87|0.77|9|254|199
chr7_1 exon 14843951 14844002 14843951 ID=Msa1011060-mRNA-1:exon:3848;Parent=Msa1011060-mRNA-1
chr7_1 exon 14844268 14844573 14844268 ID=Msa1011060-mRNA-1:exon:3847;Parent=Msa1011060-mRNA-1
chr7_1 exon 14844650 14844746 14844650 ID=Msa1011060-mRNA-1:exon:3846;Parent=Msa1011060-mRNA-1
chr7_1 exon 14846735 14846758 14846735 ID=Msa1011060-mRNA-1:exon:3845;Parent=Msa1011060-mRNA-1
chr7_1 exon 14846847 14846904 14846847 ID=Msa1011060-mRNA-1:exon:3844;Parent=Msa1011060-mRNA-1
chr7_1 exon 14848191 14848248 14848191 ID=Msa1011060-mRNA-1:exon:3843;Parent=Msa1011060-mRNA-1
chr7_1 exon 14848343 14848423 14848343 ID=Msa1011060-mRNA-1:exon:3842;Parent=Msa1011060-mRNA-1
chr7_1 exon 14849483 14849597 14849483 ID=Msa1011060-mRNA-1:exon:3841;Parent=Msa1011060-mRNA-1
chr7_1 exon 14849676 14849865 14849676 ID=Msa1011060-mRNA-1:exon:3840;Parent=Msa1011060-mRNA-1
chr7_1 five_prime_UTR 14849739 14849865 14849739 ID=Msa1011060-mRNA-1:five_prime_utr;Parent=Msa1011060-mRNA-1
chr7_1 CDS 14849676 14849738 14849676 ID=Msa1011060-mRNA-1:cds;Parent=Msa1011060-mRNA-1
chr7_1 CDS 14849483 14849597 14849483 ID=Msa1011060-mRNA-1:cds;Parent=Msa1011060-mRNA-1
chr7_1 CDS 14848343 14848423 14848343 ID=Msa1011060-mRNA-1:cds;Parent=Msa1011060-mRNA-1
chr7_1 CDS 14848191 14848248 14848191 ID=Msa1011060-mRNA-1:cds;Parent=Msa1011060-mRNA-1
chr7_1 CDS 14846847 14846904 14846847 ID=Msa1011060-mRNA-1:cds;Parent=Msa1011060-mRNA-1
chr7_1 CDS 14846735 14846758 14846735 ID=Msa1011060-mRNA-1:cds;Parent=Msa1011060-mRNA-1
chr7_1 CDS 14844650 14844746 14844650 ID=Msa1011060-mRNA-1:cds;Parent=Msa1011060-mRNA-1
chr7_1 CDS 14844470 14844573 14844470 ID=Msa1011060-mRNA-1:cds;Parent=Msa1011060-mRNA-1
chr7_1 three_prime_UTR 14844268 14844469 14844268 ID=Msa1011060-mRNA-1:three_prime_utr;Parent=Msa1011060-mRNA-1
chr7_1 three_prime_UTR 14843951 14844002 14843951 ID=Msa1011060-mRNA-1:three_prime_utr;Parent=Msa1011060-mRNA-1
Gene Sequence

>Msa1011060

ATGGCATCCCTTCAGACTTCACCTACACTTCACAGAACTCTCTTTCAGAACTCTTTCCCTCAGAAGCATGGTGGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTACTTTTCGTAGAAGAGAAGGCATCTCTTTCATTGTCAAAGCTGAACAAGAACTGTCATCTTCATCAACAGATATATCAGGAAGGCGCCAAGCAATTGCCATTGCAGCTACTGCACCATTAGTTTTTCTGTTCAACCAACCCTCAATTTCTTTTGCCGCCGATAATAAGACAGGATTTCAGCCAGTTGTGGATAGGAAAGATGGATATCACGTAACAATGATCCCAACAAGCAAACAGGATATCAAAGAATTTGGGTCACCTGAACAGGTTGCTGCAACTCTGATAAAAAAGCGTGAAATTGACGGAAAAGCATATTATCAATTCGAGTTCGTTGCTCAGGCTCCAAACTACACTCGACATGCTCTCAGCGCAGTCTCCATTGGCAATGGTAAGTTTTACACCTTGACTACAGGAGCAAATGAGAGAAGATGGGGAAAGATGAAAGACAGATTGAACACCATAGTAGAATCCTTCCAACTTTTCAAAGTTTGA

Protein sequence

>Msa1011060

MASLQTSPTLHRTLFQNSFPQKHGGSSSSSSSSSSSTFRRREGISFIVKAEQELSSSSTDISGRRQAIAIAATAPLVFLFNQPSISFAADNKTGFQPVVDRKDGYHVTMIPTSKQDIKEFGSPEQVAATLIKKREIDGKAYYQFEFVAQAPNYTRHALSAVSIGNGKFYTLTTGANERRWGKMKDRLNTIVESFQLFKV*