AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0980980


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0980980 MtrunA17_Chr6g0461551 95.090 387 17 2 1 386 1 386 0.0 752
Msa0980980 MtrunA17_Chr7g0253181 24.926 337 228 7 60 386 33 354 9.74e-29 115
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0980980 AT1G55370.2 44.144 333 145 6 55 385 60 353 1.27e-82 256
Msa0980980 AT1G55370.1 40.892 269 119 5 55 321 60 290 2.98e-52 176
Msa0980980 AT1G64770.1 25.073 343 228 9 53 386 26 348 2.51e-18 85.9

Find 90 sgRNAs with CRISPR-Local

Find 152 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCATCATGATATTATATATT+TGG 0.114257 6_4:-19673294 None:intergenic
CTCATGAACACATTAACTTT+TGG 0.232182 6_4:+19673389 Msa0980980:three_prime_UTR
TTTCATGGTCTCCTTCTAAT+TGG 0.239884 6_4:+19671703 Msa0980980:CDS
TGGATTGATTACTTCTTATA+AGG 0.259146 6_4:+19671545 Msa0980980:CDS
TAAGGTACTGAAGCTACTTT+TGG 0.272432 6_4:-19671390 None:intergenic
TTCTCCTCTTCGCTCGTATT+CGG 0.290229 6_4:-19672596 None:intergenic
AGAAAGGATTTGGAAATATA+TGG 0.300634 6_4:+19672615 Msa0980980:CDS
TCAGTATTAGTTGGAAGAAA+TGG 0.309706 6_4:+19673120 Msa0980980:CDS
TGTTGAATATAGCTAGAAAA+TGG 0.311886 6_4:-19671339 None:intergenic
CCTATTGCATAAGTTGCTTC+TGG 0.319165 6_4:-19672512 None:intergenic
CATGCAAGTTCTTTCATGTT+TGG 0.333524 6_4:+19673573 Msa0980980:three_prime_UTR
CAATTCTGAGGAATCTATTC+AGG 0.346682 6_4:+19671746 Msa0980980:CDS
GCAGTGTCAGAAGGAGAATT+TGG 0.352287 6_4:+19671609 Msa0980980:CDS
TATATTTGGATTGTGTAGAT+AGG 0.365670 6_4:-19673280 None:intergenic
AGCGAAGAGGAGAAAGGATT+TGG 0.367639 6_4:+19672605 Msa0980980:CDS
TGGAAGTTGTATGGCCAAAA+TGG 0.369055 6_4:+19671482 Msa0980980:CDS
TTCATGGTCTCCTTCTAATT+GGG 0.370031 6_4:+19671704 Msa0980980:CDS
TCTTGTGGACTTAATACAAT+TGG 0.384976 6_4:-19673240 None:intergenic
TTTAATCCAATCTTGTCATA+TGG 0.386445 6_4:-19672374 None:intergenic
TGAAGATAGTGGTGAGGAAA+TGG 0.390876 6_4:+19672706 Msa0980980:CDS
ATATAATATCATGATGCTTA+AGG 0.400755 6_4:+19673300 Msa0980980:exon
GGTGTGTTTCTAGTAGATTT+TGG 0.405033 6_4:-19671297 None:intergenic
GTGTAAACTCTCTCTTGTAT+TGG 0.410082 6_4:-19671365 None:intergenic
AATTAATTCAACAGCGTGTT+CGG 0.411588 6_4:+19673349 Msa0980980:three_prime_UTR
AAAATAAACTCCGATTCAAT+AGG 0.413697 6_4:-19672566 None:intergenic
CCAGAAGCAACTTATGCAAT+AGG 0.428313 6_4:+19672512 Msa0980980:CDS
TCTAAGTAGTCATAGTTGAT+TGG 0.433432 6_4:-19671417 None:intergenic
CTGTTCAGTCCAGGCTCATC+AGG 0.435338 6_4:+19673159 Msa0980980:CDS
TTATGCAAAACCCAATTAGA+AGG 0.440628 6_4:-19671714 None:intergenic
TGATTATCTGTTCCCCAACT+TGG 0.446166 6_4:-19672662 None:intergenic
TTTGGTGATGCTGTTATTCA+AGG 0.448112 6_4:+19671627 Msa0980980:CDS
TATTAAGTCCACAAGATGTA+TGG 0.449867 6_4:+19673247 Msa0980980:CDS
GAAGCTTTACACTCATTGAC+AGG 0.450398 6_4:+19672783 Msa0980980:CDS
AATTGATTCATGAGTAGATA+AGG 0.455135 6_4:-19671154 None:intergenic
GCAGAAGATAGTGAAGATAG+TGG 0.458702 6_4:+19672695 Msa0980980:CDS
AAAGGACCATATGACAAGAT+TGG 0.464962 6_4:+19672368 Msa0980980:CDS
CCTCATTTGTTTATGAAGCA+TGG 0.467003 6_4:+19671239 Msa0980980:exon
AGAAGAAACTCAGTATTAGT+TGG 0.473799 6_4:+19673111 Msa0980980:CDS
CCTCCTTTCCATACATCTTG+TGG 0.476094 6_4:-19673255 None:intergenic
CTGATGAGCCTGGACTGAAC+AGG 0.479462 6_4:-19673158 None:intergenic
AAAATGATGATGAAGTTTCA+TGG 0.482731 6_4:+19671688 Msa0980980:CDS
GGAGTCACATTTGAAGAAGT+TGG 0.501672 6_4:+19671459 Msa0980980:CDS
CTTTCAATTCCTGATGAGCC+TGG 0.508570 6_4:-19673168 None:intergenic
AGAAGTTGGTGGAAGTTGTA+TGG 0.511764 6_4:+19671473 Msa0980980:CDS
GTGGACTTAATACAATTGGT+TGG 0.512217 6_4:-19673236 None:intergenic
TAGCCGACCGCCTATTGAAT+CGG 0.513659 6_4:+19672556 Msa0980980:CDS
TCAATGAGTGTAAAGCTTCG+AGG 0.514142 6_4:-19672779 None:intergenic
ATTAAAATACATTGTGACAT+TGG 0.516339 6_4:+19672391 Msa0980980:CDS
TACTGTCAAATGACTAAGGA+TGG 0.517706 6_4:-19672483 None:intergenic
TCATAGTTGATTGGTTGGTA+AGG 0.520007 6_4:-19671408 None:intergenic
AATACGAGCGAAGAGGAGAA+AGG 0.520545 6_4:+19672599 Msa0980980:CDS
TCTTTGCCACTTCAAATGAC+AGG 0.523333 6_4:+19672458 Msa0980980:CDS
AGTAGTCATAGTTGATTGGT+TGG 0.527301 6_4:-19671413 None:intergenic
ATTGTGACATTGGAAGAAGA+TGG 0.536047 6_4:+19672401 Msa0980980:CDS
TACTTAGAACAAGAATTCAA+TGG 0.537821 6_4:+19671432 Msa0980980:CDS
TGCTTACTGTCAAATGACTA+AGG 0.541257 6_4:-19672487 None:intergenic
GGTAAACAAATATGTGATGA+TGG 0.544469 6_4:-19671318 None:intergenic
ACATTGGAAGAAGATGGATT+AGG 0.545100 6_4:+19672407 Msa0980980:CDS
GAAACATACCTGTTCAGTCC+AGG 0.552112 6_4:+19673150 Msa0980980:CDS
AGATAGTGAAGATAGTGGTG+AGG 0.563650 6_4:+19672700 Msa0980980:CDS
TCCTCTTCGCTCGTATTCGG+AGG 0.567150 6_4:-19672593 None:intergenic
CTTAATACTGCAGTGTCAGA+AGG 0.569822 6_4:+19671600 Msa0980980:CDS
GACTTAATACAATTGGTTGG+AGG 0.576448 6_4:-19673233 None:intergenic
GTCACATTTGAAGAAGTTGG+TGG 0.580862 6_4:+19671462 Msa0980980:CDS
ATGGAACCTGTCATTTGAAG+TGG 0.582698 6_4:-19672464 None:intergenic
AAGTTTGCATACATATGTGT+TGG 0.588220 6_4:+19673198 Msa0980980:CDS
GAACAAGAATTCAATGGACA+TGG 0.592739 6_4:+19671438 Msa0980980:CDS
CCATGCTTCATAAACAAATG+AGG 0.596509 6_4:-19671239 None:intergenic
AGGTACTGTTTCATGCATCA+AGG 0.596756 6_4:-19671219 None:intergenic
CAATCCACTTGGTAGCAACA+TGG 0.606969 6_4:-19671529 None:intergenic
TTGGGAAACCCACATTGGAG+TGG 0.607224 6_4:-19673606 None:intergenic
CTTAGAGACCACTCCAATGT+GGG 0.610092 6_4:+19673598 Msa0980980:three_prime_UTR
GCTACCATGTTGCTACCAAG+TGG 0.611640 6_4:+19671525 Msa0980980:CDS
TGTCATTTGAAGTGGCAAAG+AGG 0.615397 6_4:-19672456 None:intergenic
AGTCCACAAGATGTATGGAA+AGG 0.619952 6_4:+19673252 Msa0980980:CDS
CAGGTAGTATTAATAAACAA+AGG 0.628059 6_4:+19672350 Msa0980980:intron
CTTCTTATAAGGCACCTATG+TGG 0.628349 6_4:+19671556 Msa0980980:CDS
TATAAGGCACCTATGTGGCA+TGG 0.628930 6_4:+19671561 Msa0980980:CDS
CCACAAGATGTATGGAAAGG+AGG 0.629918 6_4:+19673255 Msa0980980:CDS
GGTGATGCTGTTATTCAAGG+AGG 0.632525 6_4:+19671630 Msa0980980:CDS
TAATATTAAAGGCAATTCTG+AGG 0.647761 6_4:+19671734 Msa0980980:CDS
ATAAACTCCGATTCAATAGG+CGG 0.659158 6_4:-19672563 None:intergenic
CAAGCAAGAAAACCAACTAG+AGG 0.664372 6_4:+19671178 Msa0980980:five_prime_UTR
TAAGAAGTAATCAATCCACT+TGG 0.665933 6_4:-19671540 None:intergenic
AAGGCACCTATGTGGCATGG+TGG 0.667629 6_4:+19671564 Msa0980980:CDS
ACTCCGATTCAATAGGCGGT+CGG 0.667753 6_4:-19672559 None:intergenic
ACTTAGAGACCACTCCAATG+TGG 0.667820 6_4:+19673597 Msa0980980:three_prime_UTR
TCCTCCGAATACGAGCGAAG+AGG 0.673403 6_4:+19672592 Msa0980980:CDS
AAGCTTTACACTCATTGACA+GGG 0.676259 6_4:+19672784 Msa0980980:CDS
TACTGTTTCATGCATCAAGG+AGG 0.696686 6_4:-19671216 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTATCATACATATATTT+TGG - chr6_4:19673480-19673499 None:intergenic 10.0%
!! ATTAATTAAAGTTGTATTGA+TGG + chr6_4:19672185-19672204 Msa0980980:intron 15.0%
!! ATAAGATTAAAATAAAGTCA+AGG + chr6_4:19672902-19672921 Msa0980980:intron 15.0%
!! TAAGATTAAAATAAAGTCAA+GGG + chr6_4:19672903-19672922 Msa0980980:intron 15.0%
!!! TGGTTTTTTTTTTTTTAATC+AGG + chr6_4:19673086-19673105 Msa0980980:intron 15.0%
!!! GGTTTTTTTTTTTTTAATCA+GGG + chr6_4:19673087-19673106 Msa0980980:intron 15.0%
!!! AAAGAAAGTTTTATAATGAT+TGG - chr6_4:19673446-19673465 None:intergenic 15.0%
!!! AGATTTTGGTATGAAAATAT+TGG - chr6_4:19671286-19671305 None:intergenic 20.0%
!! TCTGTTTAATGGTTATTATT+AGG + chr6_4:19671769-19671788 Msa0980980:intron 20.0%
!! CTGTTTAATGGTTATTATTA+GGG + chr6_4:19671770-19671789 Msa0980980:intron 20.0%
!! ATTAAAATACATTGTGACAT+TGG + chr6_4:19672391-19672410 Msa0980980:CDS 20.0%
!! TATCATTAAATCTATTGTTG+AGG - chr6_4:19672824-19672843 None:intergenic 20.0%
!!! TTGTAATTTTGATCAATGAA+GGG + chr6_4:19673009-19673028 Msa0980980:intron 20.0%
!! AAAATGATTATTTACTCGTT+TGG + chr6_4:19673066-19673085 Msa0980980:intron 20.0%
!! GCATCATGATATTATATATT+TGG - chr6_4:19673297-19673316 None:intergenic 20.0%
!! ATATAATATCATGATGCTTA+AGG + chr6_4:19673300-19673319 Msa0980980:exon 20.0%
!! AATTGATTCATGAGTAGATA+AGG - chr6_4:19671157-19671176 None:intergenic 25.0%
!!! ATTTTTTTTGTTCCTCTAGT+TGG - chr6_4:19671193-19671212 None:intergenic 25.0%
! TGTTGAATATAGCTAGAAAA+TGG - chr6_4:19671342-19671361 None:intergenic 25.0%
! TACTTAGAACAAGAATTCAA+TGG + chr6_4:19671432-19671451 Msa0980980:CDS 25.0%
!!! TCCATTTTTCAATTCCATTT+TGG - chr6_4:19671499-19671518 None:intergenic 25.0%
! TGGATTGATTACTTCTTATA+AGG + chr6_4:19671545-19671564 Msa0980980:CDS 25.0%
!! AAAATGATGATGAAGTTTCA+TGG + chr6_4:19671688-19671707 Msa0980980:CDS 25.0%
!! TGGGTTTTGCATAATATTAA+AGG + chr6_4:19671723-19671742 Msa0980980:CDS 25.0%
! TAATATTAAAGGCAATTCTG+AGG + chr6_4:19671734-19671753 Msa0980980:CDS 25.0%
! TTGAAATTTCGATACAATGA+GGG - chr6_4:19671827-19671846 None:intergenic 25.0%
!! TTTGAAATTTCGATACAATG+AGG - chr6_4:19671828-19671847 None:intergenic 25.0%
! TCACAATAACTCTTCATATA+GGG - chr6_4:19671990-19672009 None:intergenic 25.0%
! AGAGTTATTGTGAGTATTTA+AGG + chr6_4:19671997-19672016 Msa0980980:intron 25.0%
!!! TTTAAGGATTATTTTAGCGT+CGG + chr6_4:19672013-19672032 Msa0980980:intron 25.0%
!!! TTAAGAATTTTGATGCATTG+AGG + chr6_4:19672075-19672094 Msa0980980:intron 25.0%
!!! TAAGAATTTTGATGCATTGA+GGG + chr6_4:19672076-19672095 Msa0980980:intron 25.0%
!! ATTGCCCCTTATTATTATTT+TGG + chr6_4:19672142-19672161 Msa0980980:intron 25.0%
! CCAACCAAAATAATAATAAG+GGG - chr6_4:19672149-19672168 None:intergenic 25.0%
! GCCAACCAAAATAATAATAA+GGG - chr6_4:19672150-19672169 None:intergenic 25.0%
! TGCCAACCAAAATAATAATA+AGG - chr6_4:19672151-19672170 None:intergenic 25.0%
!!! ATTATTATTTTGGTTGGCAA+AGG + chr6_4:19672152-19672171 Msa0980980:intron 25.0%
! AAATTGTGCGAAAAATCATA+AGG - chr6_4:19672286-19672305 None:intergenic 25.0%
! CAGGTAGTATTAATAAACAA+AGG + chr6_4:19672350-19672369 Msa0980980:intron 25.0%
! TTTAATCCAATCTTGTCATA+TGG - chr6_4:19672377-19672396 None:intergenic 25.0%
! AAAATAAACTCCGATTCAAT+AGG - chr6_4:19672569-19672588 None:intergenic 25.0%
! AGAAAGGATTTGGAAATATA+TGG + chr6_4:19672615-19672634 Msa0980980:CDS 25.0%
! ATAAACTTGCACATATACTT+GGG + chr6_4:19672841-19672860 Msa0980980:intron 25.0%
! TAAAGCTGTTTGTTCATAAA+TGG - chr6_4:19672867-19672886 None:intergenic 25.0%
! ATAAAGTCAAGGGAATATAA+CGG + chr6_4:19672913-19672932 Msa0980980:intron 25.0%
!!! CTTGTAATTTTGATCAATGA+AGG + chr6_4:19673008-19673027 Msa0980980:intron 25.0%
! TATATTTGGATTGTGTAGAT+AGG - chr6_4:19673283-19673302 None:intergenic 25.0%
GGTAAACAAATATGTGATGA+TGG - chr6_4:19671321-19671340 None:intergenic 30.0%
TCTAAGTAGTCATAGTTGAT+TGG - chr6_4:19671420-19671439 None:intergenic 30.0%
GCCAAAATGGAATTGAAAAA+TGG + chr6_4:19671495-19671514 Msa0980980:CDS 30.0%
TAAGAAGTAATCAATCCACT+TGG - chr6_4:19671543-19671562 None:intergenic 30.0%
TTATGCAAAACCCAATTAGA+AGG - chr6_4:19671717-19671736 None:intergenic 30.0%
ATCTATTCAGGTCTGTTTAA+TGG + chr6_4:19671758-19671777 Msa0980980:intron 30.0%
ACAATACGTAAGTATACTGA+AGG - chr6_4:19671928-19671947 None:intergenic 30.0%
GTATTGTCATATTAGTCCTT+CGG + chr6_4:19671941-19671960 Msa0980980:intron 30.0%
TGACAATAAGTAAATACCGA+AGG - chr6_4:19671960-19671979 None:intergenic 30.0%
CTCACAATAACTCTTCATAT+AGG - chr6_4:19671991-19672010 None:intergenic 30.0%
!!! TTAAGGATTATTTTAGCGTC+GGG + chr6_4:19672014-19672033 Msa0980980:intron 30.0%
!!! CCCCTTATTATTATTTTGGT+TGG + chr6_4:19672146-19672165 Msa0980980:intron 30.0%
!!! TGGTTATTTTAGAAGTGTCT+CGG + chr6_4:19672205-19672224 Msa0980980:intron 30.0%
! ATCATAAGGTGTTAGATTAG+TGG - chr6_4:19672272-19672291 None:intergenic 30.0%
ACCTTGAATATATCTTATGC+AGG + chr6_4:19672331-19672350 Msa0980980:intron 30.0%
ACCTGCATAAGATATATTCA+AGG - chr6_4:19672335-19672354 None:intergenic 30.0%
! TTAAGCAATTTTTGCCAAGT+TGG + chr6_4:19672648-19672667 Msa0980980:CDS 30.0%
! TAAGCAATTTTTGCCAAGTT+GGG + chr6_4:19672649-19672668 Msa0980980:CDS 30.0%
!! TCTCTCTTTTAACTGTTTGT+AGG - chr6_4:19672735-19672754 None:intergenic 30.0%
GATAAACTTGCACATATACT+TGG + chr6_4:19672840-19672859 Msa0980980:intron 30.0%
AGAAGAAACTCAGTATTAGT+TGG + chr6_4:19673111-19673130 Msa0980980:CDS 30.0%
TCAGTATTAGTTGGAAGAAA+TGG + chr6_4:19673120-19673139 Msa0980980:CDS 30.0%
AAGTTTGCATACATATGTGT+TGG + chr6_4:19673198-19673217 Msa0980980:CDS 30.0%
TCTTGTGGACTTAATACAAT+TGG - chr6_4:19673243-19673262 None:intergenic 30.0%
TATTAAGTCCACAAGATGTA+TGG + chr6_4:19673247-19673266 Msa0980980:CDS 30.0%
AATTAATTCAACAGCGTGTT+CGG + chr6_4:19673349-19673368 Msa0980980:three_prime_UTR 30.0%
! CTCATGAACACATTAACTTT+TGG + chr6_4:19673389-19673408 Msa0980980:three_prime_UTR 30.0%
CCATGCTTCATAAACAAATG+AGG - chr6_4:19671242-19671261 None:intergenic 35.0%
CCTCATTTGTTTATGAAGCA+TGG + chr6_4:19671239-19671258 Msa0980980:exon 35.0%
!!! GGTGTGTTTCTAGTAGATTT+TGG - chr6_4:19671300-19671319 None:intergenic 35.0%
GTGTAAACTCTCTCTTGTAT+TGG - chr6_4:19671368-19671387 None:intergenic 35.0%
!!! AAGGTACTGAAGCTACTTTT+GGG - chr6_4:19671392-19671411 None:intergenic 35.0%
!!! TAAGGTACTGAAGCTACTTT+TGG - chr6_4:19671393-19671412 None:intergenic 35.0%
! TCATAGTTGATTGGTTGGTA+AGG - chr6_4:19671411-19671430 None:intergenic 35.0%
AGTAGTCATAGTTGATTGGT+TGG - chr6_4:19671416-19671435 None:intergenic 35.0%
GAACAAGAATTCAATGGACA+TGG + chr6_4:19671438-19671457 Msa0980980:CDS 35.0%
!! TTTGGTGATGCTGTTATTCA+AGG + chr6_4:19671627-19671646 Msa0980980:CDS 35.0%
TTTCATGGTCTCCTTCTAAT+TGG + chr6_4:19671703-19671722 Msa0980980:CDS 35.0%
TTCATGGTCTCCTTCTAATT+GGG + chr6_4:19671704-19671723 Msa0980980:CDS 35.0%
! CAATTCTGAGGAATCTATTC+AGG + chr6_4:19671746-19671765 Msa0980980:CDS 35.0%
!!! TAAGGATTATTTTAGCGTCG+GGG + chr6_4:19672015-19672034 Msa0980980:intron 35.0%
GTTTGATTCCTGAATGTGTA+AGG - chr6_4:19672117-19672136 None:intergenic 35.0%
AAAGGACCATATGACAAGAT+TGG + chr6_4:19672368-19672387 Msa0980980:CDS 35.0%
ATTGTGACATTGGAAGAAGA+TGG + chr6_4:19672401-19672420 Msa0980980:CDS 35.0%
! ACATTGGAAGAAGATGGATT+AGG + chr6_4:19672407-19672426 Msa0980980:CDS 35.0%
TACTGTCAAATGACTAAGGA+TGG - chr6_4:19672486-19672505 None:intergenic 35.0%
TGCTTACTGTCAAATGACTA+AGG - chr6_4:19672490-19672509 None:intergenic 35.0%
ATAAACTCCGATTCAATAGG+CGG - chr6_4:19672566-19672585 None:intergenic 35.0%
! AAGCAATTTTTGCCAAGTTG+GGG + chr6_4:19672650-19672669 Msa0980980:CDS 35.0%
AAGCTTTACACTCATTGACA+GGG + chr6_4:19672784-19672803 Msa0980980:CDS 35.0%
GACTTAATACAATTGGTTGG+AGG - chr6_4:19673236-19673255 None:intergenic 35.0%
GTGGACTTAATACAATTGGT+TGG - chr6_4:19673239-19673258 None:intergenic 35.0%
CATGCAAGTTCTTTCATGTT+TGG + chr6_4:19673573-19673592 Msa0980980:three_prime_UTR 35.0%
CAAGCAAGAAAACCAACTAG+AGG + chr6_4:19671178-19671197 Msa0980980:five_prime_UTR 40.0%
TACTGTTTCATGCATCAAGG+AGG - chr6_4:19671219-19671238 None:intergenic 40.0%
! AGGTACTGTTTCATGCATCA+AGG - chr6_4:19671222-19671241 None:intergenic 40.0%
GGAGTCACATTTGAAGAAGT+TGG + chr6_4:19671459-19671478 Msa0980980:CDS 40.0%
GTCACATTTGAAGAAGTTGG+TGG + chr6_4:19671462-19671481 Msa0980980:CDS 40.0%
!! AGAAGTTGGTGGAAGTTGTA+TGG + chr6_4:19671473-19671492 Msa0980980:CDS 40.0%
TGGAAGTTGTATGGCCAAAA+TGG + chr6_4:19671482-19671501 Msa0980980:CDS 40.0%
! CTTCTTATAAGGCACCTATG+TGG + chr6_4:19671556-19671575 Msa0980980:CDS 40.0%
CTTAATACTGCAGTGTCAGA+AGG + chr6_4:19671600-19671619 Msa0980980:CDS 40.0%
GGCTATTCGTTACACATTCA+GGG - chr6_4:19671796-19671815 None:intergenic 40.0%
TGGCTATTCGTTACACATTC+AGG - chr6_4:19671797-19671816 None:intergenic 40.0%
GATACAATGAGGGACTATTG+TGG - chr6_4:19671817-19671836 None:intergenic 40.0%
TGACTACTCCTTACACATTC+AGG + chr6_4:19672106-19672125 Msa0980980:intron 40.0%
GATTTGAACTCTGTCTCTTG+AGG + chr6_4:19672232-19672251 Msa0980980:intron 40.0%
CTGTCTCTTGAGGTTACAAA+AGG + chr6_4:19672242-19672261 Msa0980980:intron 40.0%
! TGTCATTTGAAGTGGCAAAG+AGG - chr6_4:19672459-19672478 None:intergenic 40.0%
! TCTTTGCCACTTCAAATGAC+AGG + chr6_4:19672458-19672477 Msa0980980:CDS 40.0%
! ATGGAACCTGTCATTTGAAG+TGG - chr6_4:19672467-19672486 None:intergenic 40.0%
CCTATTGCATAAGTTGCTTC+TGG - chr6_4:19672515-19672534 None:intergenic 40.0%
CCAGAAGCAACTTATGCAAT+AGG + chr6_4:19672512-19672531 Msa0980980:CDS 40.0%
TGATTATCTGTTCCCCAACT+TGG - chr6_4:19672665-19672684 None:intergenic 40.0%
GCAGAAGATAGTGAAGATAG+TGG + chr6_4:19672695-19672714 Msa0980980:CDS 40.0%
! AGATAGTGAAGATAGTGGTG+AGG + chr6_4:19672700-19672719 Msa0980980:CDS 40.0%
! TGAAGATAGTGGTGAGGAAA+TGG + chr6_4:19672706-19672725 Msa0980980:CDS 40.0%
TCAATGAGTGTAAAGCTTCG+AGG - chr6_4:19672782-19672801 None:intergenic 40.0%
GAAGCTTTACACTCATTGAC+AGG + chr6_4:19672783-19672802 Msa0980980:CDS 40.0%
AGTCCACAAGATGTATGGAA+AGG + chr6_4:19673252-19673271 Msa0980980:CDS 40.0%
! CAATCCACTTGGTAGCAACA+TGG - chr6_4:19671532-19671551 None:intergenic 45.0%
! TATAAGGCACCTATGTGGCA+TGG + chr6_4:19671561-19671580 Msa0980980:CDS 45.0%
! ACTTTTCCACCATGCCACAT+AGG - chr6_4:19671573-19671592 None:intergenic 45.0%
GCAGTGTCAGAAGGAGAATT+TGG + chr6_4:19671609-19671628 Msa0980980:CDS 45.0%
GGTGATGCTGTTATTCAAGG+AGG + chr6_4:19671630-19671649 Msa0980980:CDS 45.0%
TTCTCCTCTTCGCTCGTATT+CGG - chr6_4:19672599-19672618 None:intergenic 45.0%
AATACGAGCGAAGAGGAGAA+AGG + chr6_4:19672599-19672618 Msa0980980:CDS 45.0%
AGCGAAGAGGAGAAAGGATT+TGG + chr6_4:19672605-19672624 Msa0980980:CDS 45.0%
AACGCTGTCTCACACATCTA+GGG + chr6_4:19673040-19673059 Msa0980980:intron 45.0%
GAAACATACCTGTTCAGTCC+AGG + chr6_4:19673150-19673169 Msa0980980:CDS 45.0%
CTTTCAATTCCTGATGAGCC+TGG - chr6_4:19673171-19673190 None:intergenic 45.0%
CCTCCTTTCCATACATCTTG+TGG - chr6_4:19673258-19673277 None:intergenic 45.0%
CCACAAGATGTATGGAAAGG+AGG + chr6_4:19673255-19673274 Msa0980980:CDS 45.0%
ACTTAGAGACCACTCCAATG+TGG + chr6_4:19673597-19673616 Msa0980980:three_prime_UTR 45.0%
GCTACCATGTTGCTACCAAG+TGG + chr6_4:19671525-19671544 Msa0980980:CDS 50.0%
TAGCCGACCGCCTATTGAAT+CGG + chr6_4:19672556-19672575 Msa0980980:CDS 50.0%
ACTCCGATTCAATAGGCGGT+CGG - chr6_4:19672562-19672581 None:intergenic 50.0%
ATAACGGCACTCACGCATCT+AGG + chr6_4:19672929-19672948 Msa0980980:intron 50.0%
TAACGGCACTCACGCATCTA+GGG + chr6_4:19672930-19672949 Msa0980980:intron 50.0%
CAACGCTGTCTCACACATCT+AGG + chr6_4:19673039-19673058 Msa0980980:intron 50.0%
! AAGGCACCTATGTGGCATGG+TGG + chr6_4:19671564-19671583 Msa0980980:CDS 55.0%
TCCTCCGAATACGAGCGAAG+AGG + chr6_4:19672592-19672611 Msa0980980:CDS 55.0%
TCCTCTTCGCTCGTATTCGG+AGG - chr6_4:19672596-19672615 None:intergenic 55.0%
CTGATGAGCCTGGACTGAAC+AGG - chr6_4:19673161-19673180 None:intergenic 55.0%
CTGTTCAGTCCAGGCTCATC+AGG + chr6_4:19673159-19673178 Msa0980980:CDS 55.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 19671135 19673620 19671135 ID=Msa0980980;Name=Msa0980980
chr6_4 mRNA 19671135 19673620 19671135 ID=Msa0980980-mRNA-1;Parent=Msa0980980;Name=Msa0980980-mRNA-1;_AED=0.02;_eAED=0.02;_QI=123|1|1|1|1|1|3|315|386
chr6_4 exon 19671135 19671767 19671135 ID=Msa0980980-mRNA-1:exon:6096;Parent=Msa0980980-mRNA-1
chr6_4 exon 19672353 19672805 19672353 ID=Msa0980980-mRNA-1:exon:6097;Parent=Msa0980980-mRNA-1
chr6_4 exon 19673108 19673620 19673108 ID=Msa0980980-mRNA-1:exon:6098;Parent=Msa0980980-mRNA-1
chr6_4 five_prime_UTR 19671135 19671257 19671135 ID=Msa0980980-mRNA-1:five_prime_utr;Parent=Msa0980980-mRNA-1
chr6_4 CDS 19671258 19671767 19671258 ID=Msa0980980-mRNA-1:cds;Parent=Msa0980980-mRNA-1
chr6_4 CDS 19672353 19672805 19672353 ID=Msa0980980-mRNA-1:cds;Parent=Msa0980980-mRNA-1
chr6_4 CDS 19673108 19673305 19673108 ID=Msa0980980-mRNA-1:cds;Parent=Msa0980980-mRNA-1
chr6_4 three_prime_UTR 19673306 19673620 19673306 ID=Msa0980980-mRNA-1:three_prime_utr;Parent=Msa0980980-mRNA-1
Gene Sequence

>Msa0980980

ATGGCTTCAACTTCACTTATTTGCTCCAATATTTTCATACCAAAATCTACTAGAAACACACCATCATCACATATTTGTTTACCATTTTCTAGCTATATTCAACAAAACCAATACAAGAGAGAGTTTACACTCCCAAAAGTAGCTTCAGTACCTTACCAACCAATCAACTATGACTACTTAGAACAAGAATTCAATGGACATGGAGTCACATTTGAAGAAGTTGGTGGAAGTTGTATGGCCAAAATGGAATTGAAAAATGGAAGCATTGCTACCATGTTGCTACCAAGTGGATTGATTACTTCTTATAAGGCACCTATGTGGCATGGTGGAAAAGTTGAGTTGCTTAATACTGCAGTGTCAGAAGGAGAATTTGGTGATGCTGTTATTCAAGGAGGAGTTTCTTTAAACTTCAATTTTCAAACTCATGATGAAAATGATGATGAAGTTTCATGGTCTCCTTCTAATTGGGTTTTGCATAATATTAAAGGCAATTCTGAGGAATCTATTCAGGTAGTATTAATAAACAAAGGACCATATGACAAGATTGGATTAAAATACATTGTGACATTGGAAGAAGATGGATTAGGCTCAGAGCTTGAAATCTCAAACTCAACCTCTTTGCCACTTCAAATGACAGGTTCCATCCTTAGTCATTTGACAGTAAGCACACCAGAAGCAACTTATGCAATAGGATTAGAGAGATCAAATTACTATAGCCGACCGCCTATTGAATCGGAGTTTATTTTGAGTCCTCCGAATACGAGCGAAGAGGAGAAAGGATTTGGAAATATATGGAAATCATCTGTTAAGCAATTTTTGCCAAGTTGGGGAACAGATAATCAGAACAATGAAGCAGAAGATAGTGAAGATAGTGGTGAGGAAATGGATACCTACAAACAGTTAAAAGAGAGAGTAAGTCTTGTATACACGAATGCGCCTCGAAGCTTTACACTCATTGACAGGGGTAGAAGAAACTCAGTATTAGTTGGAAGAAATGGATTTGATGAAACATACCTGTTCAGTCCAGGCTCATCAGGAATTGAAAGTTACAGCAAGTTTGCATACATATGTGTTGGTCAAGCTGCTGTCCTCCAACCAATTGTATTAAGTCCACAAGATGTATGGAAAGGAGGAGCCTATCTACACAATCCAAATATATAA

Protein sequence

>Msa0980980

MASTSLICSNIFIPKSTRNTPSSHICLPFSSYIQQNQYKREFTLPKVASVPYQPINYDYLEQEFNGHGVTFEEVGGSCMAKMELKNGSIATMLLPSGLITSYKAPMWHGGKVELLNTAVSEGEFGDAVIQGGVSLNFNFQTHDENDDEVSWSPSNWVLHNIKGNSEESIQVVLINKGPYDKIGLKYIVTLEEDGLGSELEISNSTSLPLQMTGSILSHLTVSTPEATYAIGLERSNYYSRPPIESEFILSPPNTSEEEKGFGNIWKSSVKQFLPSWGTDNQNNEAEDSEDSGEEMDTYKQLKERVSLVYTNAPRSFTLIDRGRRNSVLVGRNGFDETYLFSPGSSGIESYSKFAYICVGQAAVLQPIVLSPQDVWKGGAYLHNPNI*