AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1296930


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1296930 MtrunA17_Chr8g0373961 96.657 329 2 1 1 320 1 329 0.0 637
Msa1296930 MtrunA17_Chr5g0403121 86.486 333 28 3 1 320 1 329 0.0 577
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1296930 AT3G50820.1 75.831 331 68 2 1 319 1 331 0.0 506
Msa1296930 AT5G66570.1 75.904 332 67 2 1 319 1 332 0.0 504
Msa1296930 AT4G37230.1 46.784 171 51 7 160 319 1 142 1.56e-30 113

Find 78 sgRNAs with CRISPR-Local

Find 270 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATTCAAAGCAAAACATATT+TGG 0.200360 8_3:+56752472 Msa1296930:CDS
CAATCTGTTTCTAAGGCTTT+TGG 0.217504 8_3:+56751483 Msa1296930:CDS
GAGCTTCAGTGGTGAGTATT+TGG 0.248643 8_3:+56752859 Msa1296930:CDS
CAAGAGTGCTGCATCATCTA+AGG 0.288335 8_3:+56753009 Msa1296930:CDS
GTCTACTCAATCTGTTTCTA+AGG 0.293774 8_3:+56751476 Msa1296930:CDS
TGGACATTGGTTTGCTGTTC+CGG 0.299883 8_3:-56752507 None:intergenic
ATACAGAGGAAGCTCTTTCT+TGG 0.307073 8_3:+56752889 Msa1296930:CDS
TCAGCCATCTGACACTGATT+TGG 0.309761 8_3:+56753202 Msa1296930:intron
CCTTGGATCTTAACATCCTT+TGG 0.315505 8_3:-56753236 None:intergenic
TTCACTTCAGTCTGATTTCA+AGG 0.316723 8_3:+56751536 Msa1296930:CDS
GTGTCATGAGTTTGGTGTTT+TGG 0.330079 8_3:-56752658 None:intergenic
TCGTCGAATGTCAGCCTCTT+TGG 0.330470 8_3:-56752449 None:intergenic
CAGCCATCTGACACTGATTT+GGG 0.336640 8_3:+56753203 Msa1296930:intron
GTTGAAGCTTCTAAGATTGC+TGG 0.344092 8_3:+56751576 Msa1296930:CDS
GAATGCAAGTGGGGTGTTCT+TGG 0.363741 8_3:-56752636 None:intergenic
GCTGTGACCGTCCAGCTTCC+CGG 0.374246 8_3:+56752776 Msa1296930:CDS
TGGTTCGAGGCAGAATTTCT+TGG 0.375551 8_3:-56752582 None:intergenic
GTAGATGCACCTCTTCCCTT+TGG 0.378716 8_3:-56752914 None:intergenic
TAGATGCACCTCTTCCCTTT+GGG 0.390483 8_3:-56752913 None:intergenic
TGATGCTACCAATTGTTTGA+TGG 0.398535 8_3:-56752825 None:intergenic
ATCAAACAATTGGTAGCATC+AGG 0.409058 8_3:+56752827 Msa1296930:CDS
CCAATTGTTTGATGGTGAAA+AGG 0.409655 8_3:-56752817 None:intergenic
CTATTGCTACGTAACTTAGT+TGG 0.411836 8_3:-56751441 None:intergenic
AACCAATGTCCAACCATTGA+TGG 0.423797 8_3:+56752518 Msa1296930:CDS
GCTTTAACTGTGAATGAAGT+TGG 0.435876 8_3:-56752602 None:intergenic
TCATCTCCTCTTCCTCCAGC+TGG 0.446505 8_3:-56752962 None:intergenic
GGTTAAACGTGTCATGAGTT+TGG 0.447063 8_3:-56752666 None:intergenic
ATGTTAAGATCCAAGGTGTT+TGG 0.455346 8_3:+56753243 Msa1296930:CDS
TGCAACTGCATTGTCATAAC+CGG 0.457996 8_3:-56752936 None:intergenic
CGAGATTGAAGGACCCTTCG+AGG 0.459066 8_3:+56752700 Msa1296930:CDS
GCATTGCCAGCTGGAGGAAG+AGG 0.465452 8_3:+56752956 Msa1296930:CDS
TACTCACCACTGAAGCTCTC+TGG 0.480748 8_3:-56752854 None:intergenic
GAATGGCACACGCTCGCCAC+CGG 0.484357 8_3:-56752795 None:intergenic
CTCCATCAATGGTTGGACAT+TGG 0.488395 8_3:-56752520 None:intergenic
AGATGAAGAAGAACTTGGTA+AGG 0.496438 8_3:+56752979 Msa1296930:CDS
AGAGGAGATGAAGAAGAACT+TGG 0.496772 8_3:+56752974 Msa1296930:CDS
TTCTTGGACCCAAAGGGAAG+AGG 0.500046 8_3:+56752905 Msa1296930:CDS
TACACACTTGACGAGATTGA+AGG 0.505377 8_3:+56752689 Msa1296930:CDS
TATTTGGAAGTCAAAGGAAC+CGG 0.507916 8_3:+56752488 Msa1296930:CDS
AGCTCTTTCTTGGACCCAAA+GGG 0.512106 8_3:+56752899 Msa1296930:CDS
CCCTTCGAGGTTTCATCAGA+CGG 0.523837 8_3:+56752713 Msa1296930:CDS
TGAGTCTACTCCTCCATCAA+TGG 0.530867 8_3:-56752531 None:intergenic
AAAGAGCTTCCTCTGTATGA+TGG 0.537718 8_3:-56752884 None:intergenic
TTTGGAACACTATGGAGCTA+AGG 0.538420 8_3:+56751506 Msa1296930:CDS
AATGGCACACGCTCGCCACC+GGG 0.539931 8_3:-56752794 None:intergenic
CCAAAGGATGTTAAGATCCA+AGG 0.542566 8_3:+56753236 Msa1296930:CDS
AATGCAGTTGCATTGCCAGC+TGG 0.544104 8_3:+56752947 Msa1296930:CDS
GGGAAGCCAGAGAGCTTCAG+TGG 0.549932 8_3:+56752848 Msa1296930:CDS
ACTCAAACTAAGCCCGAGAC+TGG 0.553515 8_3:+56753052 Msa1296930:CDS
CTGTGAATGAAGTTGGTTCG+AGG 0.555004 8_3:-56752595 None:intergenic
AAGCTCTTTCTTGGACCCAA+AGG 0.556878 8_3:+56752898 Msa1296930:CDS
AAGGGAAGAGGTGCATCTAC+CGG 0.557014 8_3:+56752917 Msa1296930:CDS
AAAACATATTTGGAAGTCAA+AGG 0.564348 8_3:+56752482 Msa1296930:CDS
TTTCAGGGAGCAAGTGCAGA+AGG 0.564367 8_3:+56752422 Msa1296930:intron
GACTCATTCTCCTTCAAACC+AGG 0.565709 8_3:+56752548 Msa1296930:CDS
AAGAGTGCTGCATCATCTAA+GGG 0.565832 8_3:+56753010 Msa1296930:CDS
AGACGGATCTGTCAAATTCG+AGG 0.572910 8_3:+56752730 Msa1296930:CDS
GTCAAATTCGAGGAGAAAGA+CGG 0.584247 8_3:+56752740 Msa1296930:CDS
TCTACTCCTCCATCAATGGT+TGG 0.592075 8_3:-56752527 None:intergenic
CTCGCCACCGGGAAGCTGGA+CGG 0.593580 8_3:-56752783 None:intergenic
TCATTCACAGTTAAAGCAGA+AGG 0.599528 8_3:+56752608 Msa1296930:CDS
TCCGTCTGATGAAACCTCGA+AGG 0.607218 8_3:-56752714 None:intergenic
TTTGGGTGCTAAATCTCCAA+AGG 0.609456 8_3:+56753220 Msa1296930:CDS
AGTAGCAGCTGCTTGTAGTG+AGG 0.611135 8_3:-56751409 None:intergenic
GCACCCAAATCAGTGTCAGA+TGG 0.614300 8_3:-56753206 None:intergenic
TGTTTGATGGTGAAAAGGAA+TGG 0.616254 8_3:-56752812 None:intergenic
GCTGAGCATACCAAACACCT+TGG 0.618527 8_3:-56753253 None:intergenic
TACAGAGACAACAAGAGCAG+AGG 0.623762 8_3:-56751613 None:intergenic
AACTAAGCCCGAGACTGGTG+AGG 0.626306 8_3:+56753057 Msa1296930:CDS
GTGCAGAAGGTGCACCAAAG+AGG 0.637588 8_3:+56752435 Msa1296930:CDS
GCAGTTGCATTGCCAGCTGG+AGG 0.640207 8_3:+56752950 Msa1296930:CDS
TTCAATCTCGTCAAGTGTGT+AGG 0.640624 8_3:-56752687 None:intergenic
TCAAACAATTGGTAGCATCA+GGG 0.642850 8_3:+56752828 Msa1296930:CDS
CAATGTCCAACCATTGATGG+AGG 0.668753 8_3:+56752521 Msa1296930:CDS
CCGTCTGATGAAACCTCGAA+GGG 0.670853 8_3:-56752713 None:intergenic
AGAGTGCTGCATCATCTAAG+GGG 0.683787 8_3:+56753011 Msa1296930:CDS
GTGACCGTCCAGCTTCCCGG+TGG 0.726338 8_3:+56752779 Msa1296930:CDS
TATTTGGTACCATCATACAG+AGG 0.747032 8_3:+56752875 Msa1296930:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAGATAAAATTAATTTGTTT+GGG - chr8_3:56751893-56751912 None:intergenic 10.0%
!! AAATTGAATAAAATTTATGT+AGG - chr8_3:56751978-56751997 None:intergenic 10.0%
!! TAAGAATATAAATTAATTTC+AGG + chr8_3:56752406-56752425 Msa1296930:intron 10.0%
!! AAGAATATAAATTAATTTCA+GGG + chr8_3:56752407-56752426 Msa1296930:intron 10.0%
!!! AAGATAAAATTAATTTGTTT+GGG - chr8_3:56751893-56751912 None:intergenic 10.0%
!! AAATTGAATAAAATTTATGT+AGG - chr8_3:56751978-56751997 None:intergenic 10.0%
!! TAAGAATATAAATTAATTTC+AGG + chr8_3:56752406-56752425 Msa1296930:intron 10.0%
!! AAGAATATAAATTAATTTCA+GGG + chr8_3:56752407-56752426 Msa1296930:intron 10.0%
!!! AGTTGATATTATCAAATATT+AGG + chr8_3:56751682-56751701 Msa1296930:intron 15.0%
!!! CAAGATAAAATTAATTTGTT+TGG - chr8_3:56751894-56751913 None:intergenic 15.0%
!!! ATTTTATCTTGTAAAATAGT+AGG + chr8_3:56751903-56751922 Msa1296930:intron 15.0%
!!! AGTTGATATTATCAAATATT+AGG + chr8_3:56751682-56751701 Msa1296930:intron 15.0%
!!! CAAGATAAAATTAATTTGTT+TGG - chr8_3:56751894-56751913 None:intergenic 15.0%
!!! ATTTTATCTTGTAAAATAGT+AGG + chr8_3:56751903-56751922 Msa1296930:intron 15.0%
!!! ACTTTTGTTGTTGTTATTAT+TGG + chr8_3:56751765-56751784 Msa1296930:intron 20.0%
!!! TTGAAATCTTTTCGAAAAAT+TGG + chr8_3:56752009-56752028 Msa1296930:intron 20.0%
!! AGCAAATATAAATCAAAACA+AGG + chr8_3:56752063-56752082 Msa1296930:intron 20.0%
!! AATTCAAAGCAAAACATATT+TGG + chr8_3:56752472-56752491 Msa1296930:CDS 20.0%
!!! ACTTTTGTTGTTGTTATTAT+TGG + chr8_3:56751765-56751784 Msa1296930:intron 20.0%
!!! TTGAAATCTTTTCGAAAAAT+TGG + chr8_3:56752009-56752028 Msa1296930:intron 20.0%
!! AGCAAATATAAATCAAAACA+AGG + chr8_3:56752063-56752082 Msa1296930:intron 20.0%
!! AATTCAAAGCAAAACATATT+TGG + chr8_3:56752472-56752491 Msa1296930:CDS 20.0%
!!! GTTACAGATCATTTTGATTA+AGG + chr8_3:56751823-56751842 Msa1296930:intron 25.0%
! TAGACAATAATAAGTTGCAA+TGG + chr8_3:56751854-56751873 Msa1296930:intron 25.0%
! ACATTACATAACCAATACAA+GGG + chr8_3:56752137-56752156 Msa1296930:intron 25.0%
! AAAACATATTTGGAAGTCAA+AGG + chr8_3:56752482-56752501 Msa1296930:CDS 25.0%
!!! GTTACAGATCATTTTGATTA+AGG + chr8_3:56751823-56751842 Msa1296930:intron 25.0%
! TAGACAATAATAAGTTGCAA+TGG + chr8_3:56751854-56751873 Msa1296930:intron 25.0%
! ACATTACATAACCAATACAA+GGG + chr8_3:56752137-56752156 Msa1296930:intron 25.0%
! AAAACATATTTGGAAGTCAA+AGG + chr8_3:56752482-56752501 Msa1296930:CDS 25.0%
!!! ACAGATCATTTTGATTAAGG+AGG + chr8_3:56751826-56751845 Msa1296930:intron 30.0%
TGAAAGACCAAGATATTACA+GGG - chr8_3:56751946-56751965 None:intergenic 30.0%
!! ATTTGCTATTTCTTAGTCTC+TGG - chr8_3:56752050-56752069 None:intergenic 30.0%
ATCAAAACAAGGACTAAACT+TGG + chr8_3:56752074-56752093 Msa1296930:intron 30.0%
!! GTATTGGTTATGTAATGTGA+TGG - chr8_3:56752135-56752154 None:intergenic 30.0%
CACATTACATAACCAATACA+AGG + chr8_3:56752136-56752155 Msa1296930:intron 30.0%
CATTACATAACCAATACAAG+GGG + chr8_3:56752138-56752157 Msa1296930:intron 30.0%
TAATTAGTATCCCATTCAAG+TGG - chr8_3:56752311-56752330 None:intergenic 30.0%
!! ATTGTATTTTCCTGGTTTGA+AGG - chr8_3:56752561-56752580 None:intergenic 30.0%
!!! ACAGATCATTTTGATTAAGG+AGG + chr8_3:56751826-56751845 Msa1296930:intron 30.0%
TGAAAGACCAAGATATTACA+GGG - chr8_3:56751946-56751965 None:intergenic 30.0%
!! ATTTGCTATTTCTTAGTCTC+TGG - chr8_3:56752050-56752069 None:intergenic 30.0%
ATCAAAACAAGGACTAAACT+TGG + chr8_3:56752074-56752093 Msa1296930:intron 30.0%
!! GTATTGGTTATGTAATGTGA+TGG - chr8_3:56752135-56752154 None:intergenic 30.0%
CACATTACATAACCAATACA+AGG + chr8_3:56752136-56752155 Msa1296930:intron 30.0%
CATTACATAACCAATACAAG+GGG + chr8_3:56752138-56752157 Msa1296930:intron 30.0%
TAATTAGTATCCCATTCAAG+TGG - chr8_3:56752311-56752330 None:intergenic 30.0%
!! ATTGTATTTTCCTGGTTTGA+AGG - chr8_3:56752561-56752580 None:intergenic 30.0%
CTATTGCTACGTAACTTAGT+TGG - chr8_3:56751444-56751463 None:intergenic 35.0%
!! GTCTACTCAATCTGTTTCTA+AGG + chr8_3:56751476-56751495 Msa1296930:CDS 35.0%
!!! CAATCTGTTTCTAAGGCTTT+TGG + chr8_3:56751483-56751502 Msa1296930:CDS 35.0%
!!! TGTTTCTAAGGCTTTTGGTT+TGG + chr8_3:56751488-56751507 Msa1296930:CDS 35.0%
TTCACTTCAGTCTGATTTCA+AGG + chr8_3:56751536-56751555 Msa1296930:CDS 35.0%
!! ATTGGACTAGTTGTGATGAA+TGG + chr8_3:56751783-56751802 Msa1296930:intron 35.0%
GTTGCAATGGAATATCATAG+AGG + chr8_3:56751867-56751886 Msa1296930:intron 35.0%
TTCTAGTCCCTGTAATATCT+TGG + chr8_3:56751936-56751955 Msa1296930:intron 35.0%
CTGAAAGACCAAGATATTAC+AGG - chr8_3:56751947-56751966 None:intergenic 35.0%
! CTGTAATATCTTGGTCTTTC+AGG + chr8_3:56751945-56751964 Msa1296930:intron 35.0%
AAACAAGGACTAAACTTGGA+AGG + chr8_3:56752078-56752097 Msa1296930:intron 35.0%
ACATCATAAACCCCTTGTAT+TGG - chr8_3:56752151-56752170 None:intergenic 35.0%
!! TTCAAGTTAGGTTGGGAATT+AGG - chr8_3:56752179-56752198 None:intergenic 35.0%
! AGGTGAATTCAAGTTAGGTT+GGG - chr8_3:56752186-56752205 None:intergenic 35.0%
AACCTAACTTGAATTCACCT+CGG + chr8_3:56752186-56752205 Msa1296930:intron 35.0%
ATGATCCAAATCCACTTGAA+TGG + chr8_3:56752297-56752316 Msa1296930:intron 35.0%
TGATCCAAATCCACTTGAAT+GGG + chr8_3:56752298-56752317 Msa1296930:intron 35.0%
TATTTGGAAGTCAAAGGAAC+CGG + chr8_3:56752488-56752507 Msa1296930:CDS 35.0%
! TTCTTGGCATTGTATTTTCC+TGG - chr8_3:56752569-56752588 None:intergenic 35.0%
GCTTTAACTGTGAATGAAGT+TGG - chr8_3:56752605-56752624 None:intergenic 35.0%
TCATTCACAGTTAAAGCAGA+AGG + chr8_3:56752608-56752627 Msa1296930:CDS 35.0%
!! TGTTTGATGGTGAAAAGGAA+TGG - chr8_3:56752815-56752834 None:intergenic 35.0%
!! CCAATTGTTTGATGGTGAAA+AGG - chr8_3:56752820-56752839 None:intergenic 35.0%
! CCTTTTCACCATCAAACAAT+TGG + chr8_3:56752817-56752836 Msa1296930:CDS 35.0%
TGATGCTACCAATTGTTTGA+TGG - chr8_3:56752828-56752847 None:intergenic 35.0%
! ATCAAACAATTGGTAGCATC+AGG + chr8_3:56752827-56752846 Msa1296930:CDS 35.0%
! TCAAACAATTGGTAGCATCA+GGG + chr8_3:56752828-56752847 Msa1296930:CDS 35.0%
TATTTGGTACCATCATACAG+AGG + chr8_3:56752875-56752894 Msa1296930:CDS 35.0%
AGATGAAGAAGAACTTGGTA+AGG + chr8_3:56752979-56752998 Msa1296930:CDS 35.0%
! ATGTTAAGATCCAAGGTGTT+TGG + chr8_3:56753243-56753262 Msa1296930:CDS 35.0%
CTATTGCTACGTAACTTAGT+TGG - chr8_3:56751444-56751463 None:intergenic 35.0%
!! GTCTACTCAATCTGTTTCTA+AGG + chr8_3:56751476-56751495 Msa1296930:CDS 35.0%
!!! CAATCTGTTTCTAAGGCTTT+TGG + chr8_3:56751483-56751502 Msa1296930:CDS 35.0%
!!! TGTTTCTAAGGCTTTTGGTT+TGG + chr8_3:56751488-56751507 Msa1296930:CDS 35.0%
TTCACTTCAGTCTGATTTCA+AGG + chr8_3:56751536-56751555 Msa1296930:CDS 35.0%
!! ATTGGACTAGTTGTGATGAA+TGG + chr8_3:56751783-56751802 Msa1296930:intron 35.0%
GTTGCAATGGAATATCATAG+AGG + chr8_3:56751867-56751886 Msa1296930:intron 35.0%
TTCTAGTCCCTGTAATATCT+TGG + chr8_3:56751936-56751955 Msa1296930:intron 35.0%
CTGAAAGACCAAGATATTAC+AGG - chr8_3:56751947-56751966 None:intergenic 35.0%
! CTGTAATATCTTGGTCTTTC+AGG + chr8_3:56751945-56751964 Msa1296930:intron 35.0%
AAACAAGGACTAAACTTGGA+AGG + chr8_3:56752078-56752097 Msa1296930:intron 35.0%
ACATCATAAACCCCTTGTAT+TGG - chr8_3:56752151-56752170 None:intergenic 35.0%
!! TTCAAGTTAGGTTGGGAATT+AGG - chr8_3:56752179-56752198 None:intergenic 35.0%
! AGGTGAATTCAAGTTAGGTT+GGG - chr8_3:56752186-56752205 None:intergenic 35.0%
AACCTAACTTGAATTCACCT+CGG + chr8_3:56752186-56752205 Msa1296930:intron 35.0%
ATGATCCAAATCCACTTGAA+TGG + chr8_3:56752297-56752316 Msa1296930:intron 35.0%
TGATCCAAATCCACTTGAAT+GGG + chr8_3:56752298-56752317 Msa1296930:intron 35.0%
TATTTGGAAGTCAAAGGAAC+CGG + chr8_3:56752488-56752507 Msa1296930:CDS 35.0%
! TTCTTGGCATTGTATTTTCC+TGG - chr8_3:56752569-56752588 None:intergenic 35.0%
GCTTTAACTGTGAATGAAGT+TGG - chr8_3:56752605-56752624 None:intergenic 35.0%
TCATTCACAGTTAAAGCAGA+AGG + chr8_3:56752608-56752627 Msa1296930:CDS 35.0%
!! TGTTTGATGGTGAAAAGGAA+TGG - chr8_3:56752815-56752834 None:intergenic 35.0%
!! CCAATTGTTTGATGGTGAAA+AGG - chr8_3:56752820-56752839 None:intergenic 35.0%
! CCTTTTCACCATCAAACAAT+TGG + chr8_3:56752817-56752836 Msa1296930:CDS 35.0%
TGATGCTACCAATTGTTTGA+TGG - chr8_3:56752828-56752847 None:intergenic 35.0%
! ATCAAACAATTGGTAGCATC+AGG + chr8_3:56752827-56752846 Msa1296930:CDS 35.0%
! TCAAACAATTGGTAGCATCA+GGG + chr8_3:56752828-56752847 Msa1296930:CDS 35.0%
TATTTGGTACCATCATACAG+AGG + chr8_3:56752875-56752894 Msa1296930:CDS 35.0%
AGATGAAGAAGAACTTGGTA+AGG + chr8_3:56752979-56752998 Msa1296930:CDS 35.0%
! ATGTTAAGATCCAAGGTGTT+TGG + chr8_3:56753243-56753262 Msa1296930:CDS 35.0%
!!! GCTTTTGGTTTGGAACACTA+TGG + chr8_3:56751498-56751517 Msa1296930:CDS 40.0%
! TTTGGAACACTATGGAGCTA+AGG + chr8_3:56751506-56751525 Msa1296930:CDS 40.0%
!! GTTGAAGCTTCTAAGATTGC+TGG + chr8_3:56751576-56751595 Msa1296930:CDS 40.0%
AGTTGTGATGAATGGTCTAC+TGG + chr8_3:56751791-56751810 Msa1296930:intron 40.0%
!! GCTATTTCTTAGTCTCTGGA+GGG - chr8_3:56752046-56752065 None:intergenic 40.0%
!! TGCTATTTCTTAGTCTCTGG+AGG - chr8_3:56752047-56752066 None:intergenic 40.0%
! GAGGTGAATTCAAGTTAGGT+TGG - chr8_3:56752187-56752206 None:intergenic 40.0%
! ATCCGAGGTGAATTCAAGTT+AGG - chr8_3:56752191-56752210 None:intergenic 40.0%
GGTCAGTTGTTGGATTTCAA+AGG + chr8_3:56752234-56752253 Msa1296930:intron 40.0%
! GTATCCCATTCAAGTGGATT+TGG - chr8_3:56752305-56752324 None:intergenic 40.0%
AACCAATGTCCAACCATTGA+TGG + chr8_3:56752518-56752537 Msa1296930:CDS 40.0%
!!! TGGTGTTTTGGAATGCAAGT+GGG - chr8_3:56752649-56752668 None:intergenic 40.0%
!!! TTGGTGTTTTGGAATGCAAG+TGG - chr8_3:56752650-56752669 None:intergenic 40.0%
!!! GTGTCATGAGTTTGGTGTTT+TGG - chr8_3:56752661-56752680 None:intergenic 40.0%
GGTTAAACGTGTCATGAGTT+TGG - chr8_3:56752669-56752688 None:intergenic 40.0%
TTCAATCTCGTCAAGTGTGT+AGG - chr8_3:56752690-56752709 None:intergenic 40.0%
TACACACTTGACGAGATTGA+AGG + chr8_3:56752689-56752708 Msa1296930:CDS 40.0%
GTCAAATTCGAGGAGAAAGA+CGG + chr8_3:56752740-56752759 Msa1296930:CDS 40.0%
AAAGAGCTTCCTCTGTATGA+TGG - chr8_3:56752887-56752906 None:intergenic 40.0%
ATACAGAGGAAGCTCTTTCT+TGG + chr8_3:56752889-56752908 Msa1296930:CDS 40.0%
TGCAACTGCATTGTCATAAC+CGG - chr8_3:56752939-56752958 None:intergenic 40.0%
AGAGGAGATGAAGAAGAACT+TGG + chr8_3:56752974-56752993 Msa1296930:CDS 40.0%
!! AAGAGTGCTGCATCATCTAA+GGG + chr8_3:56753010-56753029 Msa1296930:CDS 40.0%
TTTGGGTGCTAAATCTCCAA+AGG + chr8_3:56753220-56753239 Msa1296930:CDS 40.0%
CCTTGGATCTTAACATCCTT+TGG - chr8_3:56753239-56753258 None:intergenic 40.0%
CCAAAGGATGTTAAGATCCA+AGG + chr8_3:56753236-56753255 Msa1296930:CDS 40.0%
!!! GCTTTTGGTTTGGAACACTA+TGG + chr8_3:56751498-56751517 Msa1296930:CDS 40.0%
! TTTGGAACACTATGGAGCTA+AGG + chr8_3:56751506-56751525 Msa1296930:CDS 40.0%
!! GTTGAAGCTTCTAAGATTGC+TGG + chr8_3:56751576-56751595 Msa1296930:CDS 40.0%
AGTTGTGATGAATGGTCTAC+TGG + chr8_3:56751791-56751810 Msa1296930:intron 40.0%
!! GCTATTTCTTAGTCTCTGGA+GGG - chr8_3:56752046-56752065 None:intergenic 40.0%
!! TGCTATTTCTTAGTCTCTGG+AGG - chr8_3:56752047-56752066 None:intergenic 40.0%
! GAGGTGAATTCAAGTTAGGT+TGG - chr8_3:56752187-56752206 None:intergenic 40.0%
! ATCCGAGGTGAATTCAAGTT+AGG - chr8_3:56752191-56752210 None:intergenic 40.0%
GGTCAGTTGTTGGATTTCAA+AGG + chr8_3:56752234-56752253 Msa1296930:intron 40.0%
! GTATCCCATTCAAGTGGATT+TGG - chr8_3:56752305-56752324 None:intergenic 40.0%
AACCAATGTCCAACCATTGA+TGG + chr8_3:56752518-56752537 Msa1296930:CDS 40.0%
!!! TGGTGTTTTGGAATGCAAGT+GGG - chr8_3:56752649-56752668 None:intergenic 40.0%
!!! TTGGTGTTTTGGAATGCAAG+TGG - chr8_3:56752650-56752669 None:intergenic 40.0%
!!! GTGTCATGAGTTTGGTGTTT+TGG - chr8_3:56752661-56752680 None:intergenic 40.0%
GGTTAAACGTGTCATGAGTT+TGG - chr8_3:56752669-56752688 None:intergenic 40.0%
TTCAATCTCGTCAAGTGTGT+AGG - chr8_3:56752690-56752709 None:intergenic 40.0%
TACACACTTGACGAGATTGA+AGG + chr8_3:56752689-56752708 Msa1296930:CDS 40.0%
GTCAAATTCGAGGAGAAAGA+CGG + chr8_3:56752740-56752759 Msa1296930:CDS 40.0%
AAAGAGCTTCCTCTGTATGA+TGG - chr8_3:56752887-56752906 None:intergenic 40.0%
ATACAGAGGAAGCTCTTTCT+TGG + chr8_3:56752889-56752908 Msa1296930:CDS 40.0%
TGCAACTGCATTGTCATAAC+CGG - chr8_3:56752939-56752958 None:intergenic 40.0%
AGAGGAGATGAAGAAGAACT+TGG + chr8_3:56752974-56752993 Msa1296930:CDS 40.0%
!! AAGAGTGCTGCATCATCTAA+GGG + chr8_3:56753010-56753029 Msa1296930:CDS 40.0%
TTTGGGTGCTAAATCTCCAA+AGG + chr8_3:56753220-56753239 Msa1296930:CDS 40.0%
CCTTGGATCTTAACATCCTT+TGG - chr8_3:56753239-56753258 None:intergenic 40.0%
CCAAAGGATGTTAAGATCCA+AGG + chr8_3:56753236-56753255 Msa1296930:CDS 40.0%
TACAGAGACAACAAGAGCAG+AGG - chr8_3:56751616-56751635 None:intergenic 45.0%
GAAATCCAACAACTGACCTG+TGG - chr8_3:56752232-56752251 None:intergenic 45.0%
TTCTCTGTCTCTGCAATCAG+AGG - chr8_3:56752278-56752297 None:intergenic 45.0%
!! TGGACATTGGTTTGCTGTTC+CGG - chr8_3:56752510-56752529 None:intergenic 45.0%
CTCCATCAATGGTTGGACAT+TGG - chr8_3:56752523-56752542 None:intergenic 45.0%
CAATGTCCAACCATTGATGG+AGG + chr8_3:56752521-56752540 Msa1296930:CDS 45.0%
TCTACTCCTCCATCAATGGT+TGG - chr8_3:56752530-56752549 None:intergenic 45.0%
TGAGTCTACTCCTCCATCAA+TGG - chr8_3:56752534-56752553 None:intergenic 45.0%
GACTCATTCTCCTTCAAACC+AGG + chr8_3:56752548-56752567 Msa1296930:CDS 45.0%
TGGTTCGAGGCAGAATTTCT+TGG - chr8_3:56752585-56752604 None:intergenic 45.0%
!! CTGTGAATGAAGTTGGTTCG+AGG - chr8_3:56752598-56752617 None:intergenic 45.0%
!!! GGTGTTTTGGAATGCAAGTG+GGG - chr8_3:56752648-56752667 None:intergenic 45.0%
AGACGGATCTGTCAAATTCG+AGG + chr8_3:56752730-56752749 Msa1296930:CDS 45.0%
GAGCTTCAGTGGTGAGTATT+TGG + chr8_3:56752859-56752878 Msa1296930:CDS 45.0%
AAGCTCTTTCTTGGACCCAA+AGG + chr8_3:56752898-56752917 Msa1296930:CDS 45.0%
AGCTCTTTCTTGGACCCAAA+GGG + chr8_3:56752899-56752918 Msa1296930:CDS 45.0%
TAGATGCACCTCTTCCCTTT+GGG - chr8_3:56752916-56752935 None:intergenic 45.0%
!! CAAGAGTGCTGCATCATCTA+AGG + chr8_3:56753009-56753028 Msa1296930:CDS 45.0%
!! AGAGTGCTGCATCATCTAAG+GGG + chr8_3:56753011-56753030 Msa1296930:CDS 45.0%
! TCAGCCATCTGACACTGATT+TGG + chr8_3:56753202-56753221 Msa1296930:intron 45.0%
!! CAGCCATCTGACACTGATTT+GGG + chr8_3:56753203-56753222 Msa1296930:intron 45.0%
TACAGAGACAACAAGAGCAG+AGG - chr8_3:56751616-56751635 None:intergenic 45.0%
GAAATCCAACAACTGACCTG+TGG - chr8_3:56752232-56752251 None:intergenic 45.0%
TTCTCTGTCTCTGCAATCAG+AGG - chr8_3:56752278-56752297 None:intergenic 45.0%
!! TGGACATTGGTTTGCTGTTC+CGG - chr8_3:56752510-56752529 None:intergenic 45.0%
CTCCATCAATGGTTGGACAT+TGG - chr8_3:56752523-56752542 None:intergenic 45.0%
CAATGTCCAACCATTGATGG+AGG + chr8_3:56752521-56752540 Msa1296930:CDS 45.0%
TCTACTCCTCCATCAATGGT+TGG - chr8_3:56752530-56752549 None:intergenic 45.0%
TGAGTCTACTCCTCCATCAA+TGG - chr8_3:56752534-56752553 None:intergenic 45.0%
GACTCATTCTCCTTCAAACC+AGG + chr8_3:56752548-56752567 Msa1296930:CDS 45.0%
TGGTTCGAGGCAGAATTTCT+TGG - chr8_3:56752585-56752604 None:intergenic 45.0%
!! CTGTGAATGAAGTTGGTTCG+AGG - chr8_3:56752598-56752617 None:intergenic 45.0%
!!! GGTGTTTTGGAATGCAAGTG+GGG - chr8_3:56752648-56752667 None:intergenic 45.0%
AGACGGATCTGTCAAATTCG+AGG + chr8_3:56752730-56752749 Msa1296930:CDS 45.0%
GAGCTTCAGTGGTGAGTATT+TGG + chr8_3:56752859-56752878 Msa1296930:CDS 45.0%
AAGCTCTTTCTTGGACCCAA+AGG + chr8_3:56752898-56752917 Msa1296930:CDS 45.0%
AGCTCTTTCTTGGACCCAAA+GGG + chr8_3:56752899-56752918 Msa1296930:CDS 45.0%
TAGATGCACCTCTTCCCTTT+GGG - chr8_3:56752916-56752935 None:intergenic 45.0%
!! CAAGAGTGCTGCATCATCTA+AGG + chr8_3:56753009-56753028 Msa1296930:CDS 45.0%
!! AGAGTGCTGCATCATCTAAG+GGG + chr8_3:56753011-56753030 Msa1296930:CDS 45.0%
! TCAGCCATCTGACACTGATT+TGG + chr8_3:56753202-56753221 Msa1296930:intron 45.0%
!! CAGCCATCTGACACTGATTT+GGG + chr8_3:56753203-56753222 Msa1296930:intron 45.0%
AGTAGCAGCTGCTTGTAGTG+AGG - chr8_3:56751412-56751431 None:intergenic 50.0%
TGTGGTTGCTGAAACAGGAG+AGG - chr8_3:56752214-56752233 None:intergenic 50.0%
TCTCCTGTTTCAGCAACCAC+AGG + chr8_3:56752213-56752232 Msa1296930:intron 50.0%
TGACCTGTGGTTGCTGAAAC+AGG - chr8_3:56752219-56752238 None:intergenic 50.0%
AGCAACCACAGGTCAGTTGT+TGG + chr8_3:56752224-56752243 Msa1296930:intron 50.0%
CTGTCTCTGCAATCAGAGGT+CGG - chr8_3:56752274-56752293 None:intergenic 50.0%
TTTCAGGGAGCAAGTGCAGA+AGG + chr8_3:56752422-56752441 Msa1296930:intron 50.0%
TCGTCGAATGTCAGCCTCTT+TGG - chr8_3:56752452-56752471 None:intergenic 50.0%
! GAATGCAAGTGGGGTGTTCT+TGG - chr8_3:56752639-56752658 None:intergenic 50.0%
CCGTCTGATGAAACCTCGAA+GGG - chr8_3:56752716-56752735 None:intergenic 50.0%
CCCTTCGAGGTTTCATCAGA+CGG + chr8_3:56752713-56752732 Msa1296930:CDS 50.0%
TCCGTCTGATGAAACCTCGA+AGG - chr8_3:56752717-56752736 None:intergenic 50.0%
TACTCACCACTGAAGCTCTC+TGG - chr8_3:56752857-56752876 None:intergenic 50.0%
TTCTTGGACCCAAAGGGAAG+AGG + chr8_3:56752905-56752924 Msa1296930:CDS 50.0%
GTAGATGCACCTCTTCCCTT+TGG - chr8_3:56752917-56752936 None:intergenic 50.0%
! AAGGGAAGAGGTGCATCTAC+CGG + chr8_3:56752917-56752936 Msa1296930:CDS 50.0%
AATGCAGTTGCATTGCCAGC+TGG + chr8_3:56752947-56752966 Msa1296930:CDS 50.0%
ACTCAAACTAAGCCCGAGAC+TGG + chr8_3:56753052-56753071 Msa1296930:CDS 50.0%
GCACCCAAATCAGTGTCAGA+TGG - chr8_3:56753209-56753228 None:intergenic 50.0%
GCTGAGCATACCAAACACCT+TGG - chr8_3:56753256-56753275 None:intergenic 50.0%
AGTAGCAGCTGCTTGTAGTG+AGG - chr8_3:56751412-56751431 None:intergenic 50.0%
TGTGGTTGCTGAAACAGGAG+AGG - chr8_3:56752214-56752233 None:intergenic 50.0%
TCTCCTGTTTCAGCAACCAC+AGG + chr8_3:56752213-56752232 Msa1296930:intron 50.0%
TGACCTGTGGTTGCTGAAAC+AGG - chr8_3:56752219-56752238 None:intergenic 50.0%
AGCAACCACAGGTCAGTTGT+TGG + chr8_3:56752224-56752243 Msa1296930:intron 50.0%
CTGTCTCTGCAATCAGAGGT+CGG - chr8_3:56752274-56752293 None:intergenic 50.0%
TTTCAGGGAGCAAGTGCAGA+AGG + chr8_3:56752422-56752441 Msa1296930:intron 50.0%
TCGTCGAATGTCAGCCTCTT+TGG - chr8_3:56752452-56752471 None:intergenic 50.0%
! GAATGCAAGTGGGGTGTTCT+TGG - chr8_3:56752639-56752658 None:intergenic 50.0%
CCGTCTGATGAAACCTCGAA+GGG - chr8_3:56752716-56752735 None:intergenic 50.0%
CCCTTCGAGGTTTCATCAGA+CGG + chr8_3:56752713-56752732 Msa1296930:CDS 50.0%
TCCGTCTGATGAAACCTCGA+AGG - chr8_3:56752717-56752736 None:intergenic 50.0%
TACTCACCACTGAAGCTCTC+TGG - chr8_3:56752857-56752876 None:intergenic 50.0%
TTCTTGGACCCAAAGGGAAG+AGG + chr8_3:56752905-56752924 Msa1296930:CDS 50.0%
GTAGATGCACCTCTTCCCTT+TGG - chr8_3:56752917-56752936 None:intergenic 50.0%
! AAGGGAAGAGGTGCATCTAC+CGG + chr8_3:56752917-56752936 Msa1296930:CDS 50.0%
AATGCAGTTGCATTGCCAGC+TGG + chr8_3:56752947-56752966 Msa1296930:CDS 50.0%
ACTCAAACTAAGCCCGAGAC+TGG + chr8_3:56753052-56753071 Msa1296930:CDS 50.0%
GCACCCAAATCAGTGTCAGA+TGG - chr8_3:56753209-56753228 None:intergenic 50.0%
GCTGAGCATACCAAACACCT+TGG - chr8_3:56753256-56753275 None:intergenic 50.0%
CTGAAACAGGAGAGGATCCG+AGG - chr8_3:56752206-56752225 None:intergenic 55.0%
! GTGCAGAAGGTGCACCAAAG+AGG + chr8_3:56752435-56752454 Msa1296930:CDS 55.0%
CGAGATTGAAGGACCCTTCG+AGG + chr8_3:56752700-56752719 Msa1296930:CDS 55.0%
TCATCTCCTCTTCCTCCAGC+TGG - chr8_3:56752965-56752984 None:intergenic 55.0%
AACTAAGCCCGAGACTGGTG+AGG + chr8_3:56753057-56753076 Msa1296930:CDS 55.0%
CTGAAACAGGAGAGGATCCG+AGG - chr8_3:56752206-56752225 None:intergenic 55.0%
! GTGCAGAAGGTGCACCAAAG+AGG + chr8_3:56752435-56752454 Msa1296930:CDS 55.0%
CGAGATTGAAGGACCCTTCG+AGG + chr8_3:56752700-56752719 Msa1296930:CDS 55.0%
TCATCTCCTCTTCCTCCAGC+TGG - chr8_3:56752965-56752984 None:intergenic 55.0%
AACTAAGCCCGAGACTGGTG+AGG + chr8_3:56753057-56753076 Msa1296930:CDS 55.0%
GGGAAGCCAGAGAGCTTCAG+TGG + chr8_3:56752848-56752867 Msa1296930:CDS 60.0%
GCAGTTGCATTGCCAGCTGG+AGG + chr8_3:56752950-56752969 Msa1296930:CDS 60.0%
GCATTGCCAGCTGGAGGAAG+AGG + chr8_3:56752956-56752975 Msa1296930:CDS 60.0%
GGGAAGCCAGAGAGCTTCAG+TGG + chr8_3:56752848-56752867 Msa1296930:CDS 60.0%
GCAGTTGCATTGCCAGCTGG+AGG + chr8_3:56752950-56752969 Msa1296930:CDS 60.0%
GCATTGCCAGCTGGAGGAAG+AGG + chr8_3:56752956-56752975 Msa1296930:CDS 60.0%
GCTGTGACCGTCCAGCTTCC+CGG + chr8_3:56752776-56752795 Msa1296930:CDS 65.0%
AATGGCACACGCTCGCCACC+GGG - chr8_3:56752797-56752816 None:intergenic 65.0%
GAATGGCACACGCTCGCCAC+CGG - chr8_3:56752798-56752817 None:intergenic 65.0%
GCTGTGACCGTCCAGCTTCC+CGG + chr8_3:56752776-56752795 Msa1296930:CDS 65.0%
AATGGCACACGCTCGCCACC+GGG - chr8_3:56752797-56752816 None:intergenic 65.0%
GAATGGCACACGCTCGCCAC+CGG - chr8_3:56752798-56752817 None:intergenic 65.0%
GTGACCGTCCAGCTTCCCGG+TGG + chr8_3:56752779-56752798 Msa1296930:CDS 70.0%
CTCGCCACCGGGAAGCTGGA+CGG - chr8_3:56752786-56752805 None:intergenic 70.0%
GTGACCGTCCAGCTTCCCGG+TGG + chr8_3:56752779-56752798 Msa1296930:CDS 70.0%
CTCGCCACCGGGAAGCTGGA+CGG - chr8_3:56752786-56752805 None:intergenic 70.0%
CACGCTCGCCACCGGGAAGC+TGG - chr8_3:56752790-56752809 None:intergenic 75.0%
CACGCTCGCCACCGGGAAGC+TGG - chr8_3:56752790-56752809 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 56751402 56753286 56751402 ID=Msa1296930;Name=Msa1296930
chr8_3 mRNA 56751402 56753286 56751402 ID=Msa1296930-mRNA-1;Parent=Msa1296930;Name=Msa1296930-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0|0|1|1|1|3|0|320
chr8_3 exon 56751402 56751632 56751402 ID=Msa1296930-mRNA-1:exon:16258;Parent=Msa1296930-mRNA-1
chr8_3 exon 56752428 56753078 56752428 ID=Msa1296930-mRNA-1:exon:16259;Parent=Msa1296930-mRNA-1
chr8_3 exon 56753206 56753286 56753206 ID=Msa1296930-mRNA-1:exon:16260;Parent=Msa1296930-mRNA-1
chr8_3 CDS 56751402 56751632 56751402 ID=Msa1296930-mRNA-1:cds;Parent=Msa1296930-mRNA-1
chr8_3 CDS 56752428 56753078 56752428 ID=Msa1296930-mRNA-1:cds;Parent=Msa1296930-mRNA-1
chr8_3 CDS 56753206 56753286 56753206 ID=Msa1296930-mRNA-1:cds;Parent=Msa1296930-mRNA-1
Gene Sequence

>Msa1296930

ATGGCAGCCTCACTACAAGCAGCTGCTACTCTCATGCAACCAACTAAGTTACGTAGCAATAGTTTGCAGCTCAAGTCTACTCAATCTGTTTCTAAGGCTTTTGGTTTGGAACACTATGGAGCTAAGGTTACTTGTTCACTTCAGTCTGATTTCAAGGAGTTAGCTCACAAGTTTGTTGAAGCTTCTAAGATTGCTGGATTTGCTCTTGCTACCTCTGCTCTTGTTGTCTCTGGAGCAAGTGCAGAAGGTGCACCAAAGAGGCTGACATTCGACGAAATTCAAAGCAAAACATATTTGGAAGTCAAAGGAACCGGAACAGCAAACCAATGTCCAACCATTGATGGAGGAGTAGACTCATTCTCCTTCAAACCAGGAAAATACAATGCCAAGAAATTCTGCCTCGAACCAACTTCATTCACAGTTAAAGCAGAAGGTGTAACCAAGAACACCCCACTTGCATTCCAAAACACCAAACTCATGACACGTTTAACCTACACACTTGACGAGATTGAAGGACCCTTCGAGGTTTCATCAGACGGATCTGTCAAATTCGAGGAGAAAGACGGCATTGACTACGCAGCTGTGACCGTCCAGCTTCCCGGTGGCGAGCGTGTGCCATTCCTTTTCACCATCAAACAATTGGTAGCATCAGGGAAGCCAGAGAGCTTCAGTGGTGAGTATTTGGTACCATCATACAGAGGAAGCTCTTTCTTGGACCCAAAGGGAAGAGGTGCATCTACCGGTTATGACAATGCAGTTGCATTGCCAGCTGGAGGAAGAGGAGATGAAGAAGAACTTGGTAAGGAAAACAACAAGAGTGCTGCATCATCTAAGGGGAAAATCACATTGAGTGTTACTCAAACTAAGCCCGAGACTGGTGAGCCATCTGACACTGATTTGGGTGCTAAATCTCCAAAGGATGTTAAGATCCAAGGTGTTTGGTATGCTCAGCTTGAGTCATAG

Protein sequence

>Msa1296930

MAASLQAAATLMQPTKLRSNSLQLKSTQSVSKAFGLEHYGAKVTCSLQSDFKELAHKFVEASKIAGFALATSALVVSGASAEGAPKRLTFDEIQSKTYLEVKGTGTANQCPTIDGGVDSFSFKPGKYNAKKFCLEPTSFTVKAEGVTKNTPLAFQNTKLMTRLTYTLDEIEGPFEVSSDGSVKFEEKDGIDYAAVTVQLPGGERVPFLFTIKQLVASGKPESFSGEYLVPSYRGSSFLDPKGRGASTGYDNAVALPAGGRGDEEELGKENNKSAASSKGKITLSVTQTKPETGEPSDTDLGAKSPKDVKIQGVWYAQLES*