AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1335210


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1335210 MtrunA17_Chr8g0334531 95.720 514 19 2 1 513 1 512 0.0 930
Msa1335210 MtrunA17_Chr7g0245041 72.597 489 120 5 28 513 14 491 0.0 681
Msa1335210 MtrunA17_Chr5g0422461 41.546 414 195 9 105 510 107 481 6.48e-96 302
Msa1335210 MtrunA17_Chr7g0245081 77.660 94 21 0 407 500 2 95 6.99e-38 136
Msa1335210 MtrunA17_Chr7g0245091 87.234 47 6 0 306 352 1 47 6.55e-22 89.7
Msa1335210 MtrunA17_Chr4g0038501 26.238 202 94 6 152 350 20 169 8.75e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1335210 AT5G01920.1 69.822 507 135 9 12 512 1 495 0.0 659
Msa1335210 AT5G01920.2 69.822 507 135 9 12 512 1 495 0.0 659
Msa1335210 AT1G68830.1 41.235 405 193 11 114 510 101 468 3.52e-86 276
Msa1335210 AT3G07980.1 26.238 202 94 5 152 350 20 169 4.61e-11 66.2
Msa1335210 AT3G07980.2 26.238 202 94 5 152 350 20 169 5.01e-11 66.2

Find 130 sgRNAs with CRISPR-Local

Find 215 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAGGACTTGGTGTTTCTTC+TGG 0.130923 tig0000212:+5648 None:intergenic
CAGATTAAACTCATTGATTT+TGG 0.180146 tig0000212:-5762 Msa1335210:CDS
CAGATTCACTATCAAGAATT+TGG 0.194374 tig0000212:+5315 None:intergenic
CAGATAAACGTCCTCTTCTT+AGG 0.202236 tig0000212:+5246 None:intergenic
TCATTTGGTGTTGTTTATTC+TGG 0.207852 tig0000212:-7050 Msa1335210:CDS
AATAACTTTATCCTTAGTTT+TGG 0.242510 tig0000212:+6953 None:intergenic
ATTCAAGGGGCTGAAGAATT+TGG 0.244608 tig0000212:-6332 Msa1335210:CDS
GCAAGACCAGGTGTTCTTAT+TGG 0.255792 tig0000212:-7185 Msa1335210:CDS
CAAGAACACTTGGTGGTTAT+AGG 0.259426 tig0000212:-4986 Msa1335210:three_prime_UTR
TCTGGGAGTACATAGAGTTC+TGG 0.259567 tig0000212:+5666 None:intergenic
AGGAAGTCAGCACATGTTTC+AGG 0.264333 tig0000212:+6266 None:intergenic
CGTTCCTGACCGCACCCTTT+TGG 0.280827 tig0000212:-5706 Msa1335210:CDS
GAGGACTTGGTGTTTCTTCT+GGG 0.290835 tig0000212:+5649 None:intergenic
TGATCTGTTTGATACTTATT+CGG 0.294442 tig0000212:-5474 Msa1335210:CDS
TTGAGGAATGGTTCAATTAC+CGG 0.308751 tig0000212:-6304 Msa1335210:CDS
AACTTAGAATCTGTCATGTT+TGG 0.314194 tig0000212:-5939 Msa1335210:CDS
AAGGTGGAAAATGGCTTGTT+TGG 0.317886 tig0000212:-6202 Msa1335210:CDS
TCTTAAGAGAAGTAATTATC+TGG 0.321848 tig0000212:+5853 None:intergenic
AAGAACACTTGGTGGTTATA+GGG 0.329881 tig0000212:-4985 Msa1335210:three_prime_UTR
TGTTGTTTATTCTGGTGTTT+TGG 0.331655 tig0000212:-7042 Msa1335210:CDS
AGTTCACAAAAGGTGGAAAA+TGG 0.341601 tig0000212:-6211 Msa1335210:CDS
GGATAAAGTTATTCTCAAAA+AGG 0.346106 tig0000212:-6943 Msa1335210:intron
CAACTTAGTGGTCACCAAAC+AGG 0.353532 tig0000212:-5787 Msa1335210:CDS
CAAATTCTTGATAGTGAATC+TGG 0.355583 tig0000212:-5314 Msa1335210:CDS
TCACCTCCTAGAAGAAAATA+AGG 0.357841 tig0000212:+5203 None:intergenic
GGGTTCCAACCTTGTTGCCT+TGG 0.384780 tig0000212:+6974 None:intergenic
CTTAAGAAAATTCATGATAC+AGG 0.385572 tig0000212:-5837 Msa1335210:CDS
CTGGGAGTACATAGAGTTCT+GGG 0.385893 tig0000212:+5667 None:intergenic
GTTGCGCTCTTTCATGTAAT+CGG 0.387894 tig0000212:+5971 None:intergenic
CAAAGCAGCAGGAGACCTTA+AGG 0.395863 tig0000212:+5418 None:intergenic
CTGTTTGATACTTATTCGGC+TGG 0.396996 tig0000212:-5470 Msa1335210:CDS
CAGGTTAAGGTTGGAATTCA+AGG 0.397973 tig0000212:-6347 Msa1335210:CDS
ATTCCTTCTTTCCTTCGATC+AGG 0.411992 tig0000212:-7290 Msa1335210:CDS
TGAAGAATTTGGTGAATTTG+AGG 0.416266 tig0000212:-6321 Msa1335210:CDS
TAATTTCACCAATGGTTTGT+TGG 0.417180 tig0000212:-7330 Msa1335210:CDS
TTTCTTGTTGGAGATAAAAT+CGG 0.418502 tig0000212:-7080 Msa1335210:CDS
GGTGAAAAGAACGCAGCAAT+TGG 0.430107 tig0000212:+5618 None:intergenic
AAAATCGGTGAAGGGTCATT+TGG 0.434082 tig0000212:-7065 Msa1335210:CDS
TTAAAATTCTTCAAAGCAGC+AGG 0.436042 tig0000212:+5407 None:intergenic
TGCATTACACTTTGTAGTGT+TGG 0.436136 tig0000212:+7364 None:intergenic
AGATAAACGTCCTCTTCTTA+GGG 0.438198 tig0000212:+5247 None:intergenic
CAAGTTGAAGAGGAGCAAAA+AGG 0.442438 tig0000212:+7147 None:intergenic
AAATGGCAATACCAACCTTA+AGG 0.442773 tig0000212:-5433 Msa1335210:CDS
AAACATAGTAACATCATCAT+AGG 0.443413 tig0000212:+7578 None:intergenic
ATCTGGTAGAGGCTGGGACT+TGG 0.446958 tig0000212:-5297 Msa1335210:CDS
CTATCAAGAATTTGGAGGTC+GGG 0.446971 tig0000212:+5323 None:intergenic
AATGGTTTGTTGGATGTTGG+TGG 0.459164 tig0000212:-7320 Msa1335210:CDS
GAATAAGTATCAAACAGATC+AGG 0.461033 tig0000212:+5476 None:intergenic
ACCAATGGTTTGTTGGATGT+TGG 0.465781 tig0000212:-7323 Msa1335210:CDS
AAATAAACCTGCCATAAGAT+TGG 0.467031 tig0000212:+5597 None:intergenic
ATGGTTTGTTGGATGTTGGT+GGG 0.467597 tig0000212:-7319 Msa1335210:CDS
TTGGTGCAGCAACAGACCTT+CGG 0.468641 tig0000212:-5743 Msa1335210:CDS
TTGAATATGCAGGTTAAGGT+TGG 0.469673 tig0000212:-6356 Msa1335210:intron
GAAACATGTGCTGACTTCCT+TGG 0.472511 tig0000212:-6263 Msa1335210:CDS
AATTATCAGACATGCAAAGA+TGG 0.476231 tig0000212:-7250 Msa1335210:CDS
ATTGGCGCTGGTGGAGGACT+TGG 0.476970 tig0000212:+5636 None:intergenic
TATAAAGCCAGCCAACTTAG+TGG 0.477446 tig0000212:-5799 Msa1335210:CDS
GCAGCAATTGGCGCTGGTGG+AGG 0.482408 tig0000212:+5630 None:intergenic
TTGGTGACCACTAAGTTGGC+TGG 0.491398 tig0000212:+5792 None:intergenic
GAGTTTAATCTGTCCCTGTT+TGG 0.495629 tig0000212:+5773 None:intergenic
ATGACAGATTCTAAGTTTGA+AGG 0.504582 tig0000212:+5945 None:intergenic
TGGGATTGTACTACTTCAAA+TGG 0.504661 tig0000212:-5450 Msa1335210:CDS
AACGCAGCAATTGGCGCTGG+TGG 0.504872 tig0000212:+5627 None:intergenic
TTTGATAATAATTTCACCAA+TGG 0.508196 tig0000212:-7338 Msa1335210:CDS
GGCAATAGTCGGGATCCAAA+AGG 0.508880 tig0000212:+5691 None:intergenic
ATCTCCAACAAGAAAATCAC+CGG 0.512048 tig0000212:+7088 None:intergenic
GGATCCAAAAGGGTGCGGTC+AGG 0.512727 tig0000212:+5702 None:intergenic
ACAAACTCACAGTTCACAAA+AGG 0.512881 tig0000212:-6221 Msa1335210:CDS
ATAGTGAATCTGGTAGAGGC+TGG 0.515673 tig0000212:-5304 Msa1335210:CDS
ATAGTTGTAACAGTTGGAGT+TGG 0.517434 tig0000212:+7482 None:intergenic
TGGTTTGTTGGATGTTGGTG+GGG 0.524731 tig0000212:-7318 Msa1335210:CDS
TGACAGATTCTAAGTTTGAA+GGG 0.525444 tig0000212:+5946 None:intergenic
ATGGCTTGTTTGGAAATTTG+AGG 0.527072 tig0000212:-6192 Msa1335210:intron
CTTGATAGTGAATCTGGTAG+AGG 0.528425 tig0000212:-5308 Msa1335210:CDS
AGTCCTGATCGAAGGAAAGA+AGG 0.531493 tig0000212:+7287 None:intergenic
GCAATAGTCGGGATCCAAAA+GGG 0.536861 tig0000212:+5692 None:intergenic
AAGGTTGGAACCCAAAACTA+AGG 0.537050 tig0000212:-6964 Msa1335210:CDS
AACTCACAGTTCACAAAAGG+TGG 0.542299 tig0000212:-6218 Msa1335210:CDS
GGAGGGAGTATACTCGCCTC+AGG 0.542612 tig0000212:-5346 Msa1335210:CDS
AAAATCCAAGGCAACAAGGT+TGG 0.543197 tig0000212:-6979 Msa1335210:CDS
TATCAGCCACAAAACTTCCA+AGG 0.543904 tig0000212:+6246 None:intergenic
ACAAAGCTTATATCTGAAAG+AGG 0.543985 tig0000212:-5272 Msa1335210:CDS
TTAAGTATAGTTGTAACAGT+TGG 0.548626 tig0000212:+7476 None:intergenic
ATTATCAGACATGCAAAGAT+GGG 0.550083 tig0000212:-7249 Msa1335210:CDS
GATGTTGAGGTGGACAAGAG+AGG 0.551839 tig0000212:-7002 Msa1335210:CDS
GGAAGGAGAAATTTGAAGAC+CGG 0.552012 tig0000212:-7107 Msa1335210:CDS
CTGTTTGGTGACCACTAAGT+TGG 0.553834 tig0000212:+5788 None:intergenic
ATTCACTATCAAGAATTTGG+AGG 0.555926 tig0000212:+5318 None:intergenic
AGGTTAAGGTTGGAATTCAA+GGG 0.556860 tig0000212:-6346 Msa1335210:CDS
CAAACACTAGCAAGAACACT+TGG 0.567023 tig0000212:-4996 Msa1335210:three_prime_UTR
ACCAACATCCAACAAACCAT+TGG 0.568449 tig0000212:+7322 None:intergenic
TTAGCAAAACCAAGTTGAAG+AGG 0.569301 tig0000212:+7137 None:intergenic
CGTAATTCTTTCCGATCCGA+AGG 0.571846 tig0000212:+5727 None:intergenic
CAGGTGCTGCTCTAGATAGC+CGG 0.573871 tig0000212:+6285 None:intergenic
AATTTGGTGAATTTGAGGAA+TGG 0.573912 tig0000212:-6316 Msa1335210:CDS
AACTTAGTGGTCACCAAACA+GGG 0.574734 tig0000212:-5786 Msa1335210:CDS
ATATACTGACATTATCATGC+TGG 0.575534 tig0000212:+5134 None:intergenic
ATGTTTGGACGTGTGTTGCA+AGG 0.579309 tig0000212:-5924 Msa1335210:CDS
TGTTTGATACTTATTCGGCT+GGG 0.581574 tig0000212:-5469 Msa1335210:CDS
GAATTTGGAGGTCGGGCCTG+AGG 0.582291 tig0000212:+5330 None:intergenic
TGGGAGTACATAGAGTTCTG+GGG 0.582528 tig0000212:+5668 None:intergenic
AATAAGTATCAAACAGATCA+GGG 0.584272 tig0000212:+5477 None:intergenic
GTTGGAGATAAAATCGGTGA+AGG 0.586301 tig0000212:-7074 Msa1335210:CDS
AAAACAAGAACATTGAAGAA+GGG 0.592346 tig0000212:+4918 None:intergenic
TAGTGAATCTGGTAGAGGCT+GGG 0.593926 tig0000212:-5303 Msa1335210:CDS
ATAGGAAGACGTGGCAAGAG+AGG 0.594683 tig0000212:-7603 Msa1335210:five_prime_UTR
ACACTAGCAAGAACACTTGG+TGG 0.598493 tig0000212:-4993 Msa1335210:three_prime_UTR
AAGAACGCAGCAATTGGCGC+TGG 0.598908 tig0000212:+5624 None:intergenic
GGGAGTACATAGAGTTCTGG+GGG 0.603048 tig0000212:+5669 None:intergenic
GCAGCAGGAGACCTTAAGGT+TGG 0.603473 tig0000212:+5422 None:intergenic
ACTATCAAGAATTTGGAGGT+CGG 0.607440 tig0000212:+5322 None:intergenic
AAAGAATGTGGTGGATGTTG+AGG 0.609920 tig0000212:-7015 Msa1335210:CDS
GAAAGAGGTCCCCTAAGAAG+AGG 0.622015 tig0000212:-5257 Msa1335210:CDS
TTGTAGTGTTGGTATTGACA+CGG 0.625771 tig0000212:+7375 None:intergenic
ATGGCACCAATAAGAACACC+TGG 0.630764 tig0000212:+7179 None:intergenic
ACTGAAGTAGTCCTGATCGA+AGG 0.632836 tig0000212:+7279 None:intergenic
GGTTAAGGTTGGAATTCAAG+GGG 0.633298 tig0000212:-6345 Msa1335210:CDS
AGTCGGGATCCAAAAGGGTG+CGG 0.634552 tig0000212:+5697 None:intergenic
CAGAATGAAATGATGAGAGA+AGG 0.635481 tig0000212:+4953 None:intergenic
ATCGAAGGAAAGAAGGAATG+TGG 0.635614 tig0000212:+7294 None:intergenic
GAGGAAAATCCAAGGCAACA+AGG 0.637928 tig0000212:-6983 Msa1335210:CDS
TTGGAGATAAAATCGGTGAA+GGG 0.644807 tig0000212:-7073 Msa1335210:CDS
GAATGTGGTGGATGTTGAGG+TGG 0.645659 tig0000212:-7012 Msa1335210:CDS
GGACAAGAGAGGAAAATCCA+AGG 0.649587 tig0000212:-6991 Msa1335210:CDS
TTTGGTCTCAAAGAATGTGG+TGG 0.650196 tig0000212:-7024 Msa1335210:CDS
ATATACTTAACTGCAAGACC+AGG 0.651960 tig0000212:-7197 Msa1335210:CDS
GCAGCAACAGACCTTCGGAT+CGG 0.658142 tig0000212:-5738 Msa1335210:CDS
TAAAGTAAAATAGGAAGACG+TGG 0.687992 tig0000212:-7612 None:intergenic
GATAAACGTCCTCTTCTTAG+GGG 0.689705 tig0000212:+5248 None:intergenic
GGAGTACATAGAGTTCTGGG+GGG 0.810828 tig0000212:+5670 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAAATTGAATTTTAGTATA+AGG - tig0000212:5525-5544 Msa1335210:intron 10.0%
!! AAAAATAAATGAATTAGAAA+AGG + tig0000212:7303-7322 None:intergenic 10.0%
!! TATCATAACAAAAACAATAA+TGG - tig0000212:4889-4908 Msa1335210:intron 15.0%
!! TTTATTTAGACAAGAAATAA+GGG + tig0000212:5509-5528 None:intergenic 15.0%
!!! TTTTATTTAGACAAGAAATA+AGG + tig0000212:5510-5529 None:intergenic 15.0%
!! TATGATTACATTCAATTATT+TGG - tig0000212:5659-5678 Msa1335210:CDS 15.0%
!!! AATTCTGTTTTTAATGATTA+AGG - tig0000212:5992-6011 Msa1335210:intron 15.0%
!!! GAAACATTTGTATGTTTTAA+GGG + tig0000212:4989-5008 None:intergenic 20.0%
!!! AGAAACATTTGTATGTTTTA+AGG + tig0000212:4990-5009 None:intergenic 20.0%
!!! TTTGATAATAATTTCACCAA+TGG - tig0000212:5070-5089 Msa1335210:intron 20.0%
!!! ATAACTTTATCCTTAGTTTT+GGG + tig0000212:5457-5476 None:intergenic 20.0%
!!! AATAACTTTATCCTTAGTTT+TGG + tig0000212:5458-5477 None:intergenic 20.0%
!! TTATTTAGACAAGAAATAAG+GGG + tig0000212:5508-5527 None:intergenic 20.0%
!!! ATTGAATTTTAGTATAAGGT+AGG - tig0000212:5529-5548 Msa1335210:intron 20.0%
!!! ATATTTTCACGACATAATTA+GGG + tig0000212:6844-6863 None:intergenic 20.0%
!! GATTATTTCATATATTGCAT+TGG - tig0000212:6864-6883 Msa1335210:intron 20.0%
!!! TGCTTTGAAGAATTTTAATT+TGG - tig0000212:7006-7025 Msa1335210:CDS 20.0%
!! ATATGATTTGAAAAAATGGA+GGG - tig0000212:7045-7064 Msa1335210:CDS 20.0%
!!! TTTTTCAGAATTATTGTTGA+AGG - tig0000212:7319-7338 Msa1335210:CDS 20.0%
!! GTGAAAAATATAAATCTACA+TGG + tig0000212:7379-7398 None:intergenic 20.0%
! AAACATAGTAACATCATCAT+AGG + tig0000212:4833-4852 None:intergenic 25.0%
! TTAAGTATAGTTGTAACAGT+TGG + tig0000212:4935-4954 None:intergenic 25.0%
! TTTCTTGTTGGAGATAAAAT+CGG - tig0000212:5328-5347 Msa1335210:CDS 25.0%
! GGATAAAGTTATTCTCAAAA+AGG - tig0000212:5465-5484 Msa1335210:CDS 25.0%
! CCTTTACATTCAATTATTAC+CGG - tig0000212:5695-5714 Msa1335210:CDS 25.0%
!!! TTAAATTTTAACCATCCATG+TGG - tig0000212:5890-5909 Msa1335210:CDS 25.0%
! ATAAAACTTTAGACATGTCT+AGG + tig0000212:6294-6313 None:intergenic 25.0%
! TTATTGCTTGTACTTCATTT+AGG - tig0000212:6310-6329 Msa1335210:CDS 25.0%
! CTTAATTTATCATCTGAATC+TGG - tig0000212:6349-6368 Msa1335210:intron 25.0%
! ATTCCTTAACATACACTAAT+TGG - tig0000212:6379-6398 Msa1335210:intron 25.0%
! TCTTAAGAGAAGTAATTATC+TGG + tig0000212:6558-6577 None:intergenic 25.0%
! CTTAAGAAAATTCATGATAC+AGG - tig0000212:6571-6590 Msa1335210:intron 25.0%
!!! CAGATTAAACTCATTGATTT+TGG - tig0000212:6646-6665 Msa1335210:intron 25.0%
!! CATATTTTCACGACATAATT+AGG + tig0000212:6845-6864 None:intergenic 25.0%
! AATAAGTATCAAACAGATCA+GGG + tig0000212:6934-6953 None:intergenic 25.0%
! TGATCTGTTTGATACTTATT+CGG - tig0000212:6934-6953 Msa1335210:intron 25.0%
! AATTTGGAAATAAAAACCTG+TGG - tig0000212:7022-7041 Msa1335210:CDS 25.0%
!!! TTTTTTCAAATCATATCCAC+AGG + tig0000212:7041-7060 None:intergenic 25.0%
! GTGGATATGATTTGAAAAAA+TGG - tig0000212:7041-7060 Msa1335210:CDS 25.0%
! GATATGATTTGAAAAAATGG+AGG - tig0000212:7044-7063 Msa1335210:CDS 25.0%
!! GGAATTTTATATCTCAAAGA+AGG - tig0000212:7340-7359 Msa1335210:CDS 25.0%
! AAAATATAAATCTACATGGC+AGG + tig0000212:7375-7394 None:intergenic 25.0%
! AAAACAAGAACATTGAAGAA+GGG + tig0000212:7493-7512 None:intergenic 25.0%
! AAAAACAAGAACATTGAAGA+AGG + tig0000212:7494-7513 None:intergenic 25.0%
! TAATTTCACCAATGGTTTGT+TGG - tig0000212:5078-5097 Msa1335210:intron 30.0%
AATTATCAGACATGCAAAGA+TGG - tig0000212:5158-5177 Msa1335210:CDS 30.0%
ATTATCAGACATGCAAAGAT+GGG - tig0000212:5159-5178 Msa1335210:CDS 30.0%
!!! CTTGGTTTTGCTAATTTATC+TGG - tig0000212:5280-5299 Msa1335210:CDS 30.0%
! GTTTTGCTAATTTATCTGGA+AGG - tig0000212:5284-5303 Msa1335210:CDS 30.0%
!! TCATTTGGTGTTGTTTATTC+TGG - tig0000212:5358-5377 Msa1335210:CDS 30.0%
!! TGTTGTTTATTCTGGTGTTT+TGG - tig0000212:5366-5385 Msa1335210:CDS 30.0%
ATGCTTAAAACAACCAAAAC+AGG - tig0000212:5566-5585 Msa1335210:intron 30.0%
CCGGTAATAATTGAATGTAA+AGG + tig0000212:5698-5717 None:intergenic 30.0%
TGTAGTGTCTCTTAGAATTT+GGG - tig0000212:5732-5751 Msa1335210:CDS 30.0%
ATGTCATATCTCTTTCAATG+TGG - tig0000212:5832-5851 Msa1335210:CDS 30.0%
TGTCATATCTCTTTCAATGT+GGG - tig0000212:5833-5852 Msa1335210:CDS 30.0%
AGCTAACTAATTGAATATGC+AGG - tig0000212:6042-6061 Msa1335210:intron 30.0%
CTAATTGAATATGCAGGTTA+AGG - tig0000212:6048-6067 Msa1335210:intron 30.0%
! TGAAGAATTTGGTGAATTTG+AGG - tig0000212:6087-6106 Msa1335210:intron 30.0%
! AATTTGGTGAATTTGAGGAA+TGG - tig0000212:6092-6111 Msa1335210:intron 30.0%
AGACATGTCTAGGTAATTTA+AGG + tig0000212:6284-6303 None:intergenic 30.0%
TCTCCAATTAGTGTATGTTA+AGG + tig0000212:6385-6404 None:intergenic 30.0%
TGACAGATTCTAAGTTTGAA+GGG + tig0000212:6465-6484 None:intergenic 30.0%
ATGACAGATTCTAAGTTTGA+AGG + tig0000212:6466-6485 None:intergenic 30.0%
AACTTAGAATCTGTCATGTT+TGG - tig0000212:6469-6488 Msa1335210:intron 30.0%
AAATAAACCTGCCATAAGAT+TGG + tig0000212:6814-6833 None:intergenic 30.0%
GAATAAGTATCAAACAGATC+AGG + tig0000212:6935-6954 None:intergenic 30.0%
TTAAAATTCTTCAAAGCAGC+AGG + tig0000212:7004-7023 None:intergenic 30.0%
ATTCACTATCAAGAATTTGG+AGG + tig0000212:7093-7112 None:intergenic 30.0%
CAGATTCACTATCAAGAATT+TGG + tig0000212:7096-7115 None:intergenic 30.0%
!! CAAATTCTTGATAGTGAATC+TGG - tig0000212:7094-7113 Msa1335210:CDS 30.0%
ACAAAGCTTATATCTGAAAG+AGG - tig0000212:7136-7155 Msa1335210:CDS 30.0%
!!! AGACATCCTTATTTTCTTCT+AGG - tig0000212:7199-7218 Msa1335210:CDS 30.0%
ATATACTGACATTATCATGC+TGG + tig0000212:7277-7296 None:intergenic 30.0%
ATAGTTGTAACAGTTGGAGT+TGG + tig0000212:4929-4948 None:intergenic 35.0%
!! TTGTAGTGTTGGTATTGACA+CGG + tig0000212:5036-5055 None:intergenic 35.0%
TGCATTACACTTTGTAGTGT+TGG + tig0000212:5047-5066 None:intergenic 35.0%
! AGATGGGAGTTTCTTCTTTT+TGG - tig0000212:5175-5194 Msa1335210:CDS 35.0%
!!! TTCTTTTTGGTGGACTCATA+TGG - tig0000212:5188-5207 Msa1335210:CDS 35.0%
ATATACTTAACTGCAAGACC+AGG - tig0000212:5211-5230 Msa1335210:CDS 35.0%
AGCAAAAAGGTAAGCATCAA+TGG + tig0000212:5251-5270 None:intergenic 35.0%
! TTAGCAAAACCAAGTTGAAG+AGG + tig0000212:5274-5293 None:intergenic 35.0%
ATCTCCAACAAGAAAATCAC+CGG + tig0000212:5323-5342 None:intergenic 35.0%
TTGGAGATAAAATCGGTGAA+GGG - tig0000212:5335-5354 Msa1335210:CDS 35.0%
!!! TGTTTTGGTCTCAAAGAATG+TGG - tig0000212:5381-5400 Msa1335210:CDS 35.0%
GTGTAGTGTCTCTTAGAATT+TGG - tig0000212:5731-5750 Msa1335210:CDS 35.0%
GTAACTCAACCCTACAAAAT+CGG - tig0000212:5761-5780 Msa1335210:CDS 35.0%
TTGAATATGCAGGTTAAGGT+TGG - tig0000212:6052-6071 Msa1335210:intron 35.0%
AGGTTAAGGTTGGAATTCAA+GGG - tig0000212:6062-6081 Msa1335210:intron 35.0%
TTGAGGAATGGTTCAATTAC+CGG - tig0000212:6104-6123 Msa1335210:intron 35.0%
ACAAACTCACAGTTCACAAA+AGG - tig0000212:6187-6206 Msa1335210:intron 35.0%
AGTTCACAAAAGGTGGAAAA+TGG - tig0000212:6197-6216 Msa1335210:CDS 35.0%
!! ATGGCTTGTTTGGAAATTTG+AGG - tig0000212:6216-6235 Msa1335210:CDS 35.0%
TGCAATCGAAATATGAGTCA+AGG + tig0000212:6244-6263 None:intergenic 35.0%
TTGCTTGTACTTCATTTAGG+TGG - tig0000212:6313-6332 Msa1335210:CDS 35.0%
! CGTTCTTTTCACCAATCTTA+TGG - tig0000212:6800-6819 Msa1335210:intron 35.0%
TGTTTGATACTTATTCGGCT+GGG - tig0000212:6939-6958 Msa1335210:intron 35.0%
TGGGATTGTACTACTTCAAA+TGG - tig0000212:6958-6977 Msa1335210:CDS 35.0%
AAATGGCAATACCAACCTTA+AGG - tig0000212:6975-6994 Msa1335210:CDS 35.0%
ACTATCAAGAATTTGGAGGT+CGG + tig0000212:7089-7108 None:intergenic 35.0%
AGATAAACGTCCTCTTCTTA+GGG + tig0000212:7164-7183 None:intergenic 35.0%
!!! CATCCTTATTTTCTTCTAGG+AGG - tig0000212:7202-7221 Msa1335210:CDS 35.0%
TCACCTCCTAGAAGAAAATA+AGG + tig0000212:7208-7227 None:intergenic 35.0%
! AAGAACACTTGGTGGTTATA+GGG - tig0000212:7423-7442 Msa1335210:CDS 35.0%
CAGAATGAAATGATGAGAGA+AGG + tig0000212:7458-7477 None:intergenic 35.0%
!! ACCAATGGTTTGTTGGATGT+TGG - tig0000212:5085-5104 Msa1335210:intron 40.0%
ACCAACATCCAACAAACCAT+TGG + tig0000212:5089-5108 None:intergenic 40.0%
!! AATGGTTTGTTGGATGTTGG+TGG - tig0000212:5088-5107 Msa1335210:intron 40.0%
!! ATGGTTTGTTGGATGTTGGT+GGG - tig0000212:5089-5108 Msa1335210:intron 40.0%
ATCGAAGGAAAGAAGGAATG+TGG + tig0000212:5117-5136 None:intergenic 40.0%
ATTCCTTCTTTCCTTCGATC+AGG - tig0000212:5118-5137 Msa1335210:intron 40.0%
! TGGGAGTTTCTTCTTTTTGG+TGG - tig0000212:5178-5197 Msa1335210:CDS 40.0%
! CAAGTTGAAGAGGAGCAAAA+AGG + tig0000212:5264-5283 None:intergenic 40.0%
! CTTTTTGCTCCTCTTCAACT+TGG - tig0000212:5262-5281 Msa1335210:CDS 40.0%
GGAAGGAGAAATTTGAAGAC+CGG - tig0000212:5301-5320 Msa1335210:CDS 40.0%
! AAGACCGGTGATTTTCTTGT+TGG - tig0000212:5316-5335 Msa1335210:CDS 40.0%
GTTGGAGATAAAATCGGTGA+AGG - tig0000212:5334-5353 Msa1335210:CDS 40.0%
AAAATCGGTGAAGGGTCATT+TGG - tig0000212:5343-5362 Msa1335210:CDS 40.0%
TTTGGTCTCAAAGAATGTGG+TGG - tig0000212:5384-5403 Msa1335210:CDS 40.0%
!! AAAGAATGTGGTGGATGTTG+AGG - tig0000212:5393-5412 Msa1335210:CDS 40.0%
AAAATCCAAGGCAACAAGGT+TGG - tig0000212:5429-5448 Msa1335210:CDS 40.0%
AAGGTTGGAACCCAAAACTA+AGG - tig0000212:5444-5463 Msa1335210:CDS 40.0%
! CCTAATGCTATAGCCTGTTT+TGG + tig0000212:5582-5601 None:intergenic 40.0%
CCAAAACAGGCTATAGCATT+AGG - tig0000212:5579-5598 Msa1335210:intron 40.0%
AATGTAAAGGACATGTGTCG+TGG + tig0000212:5685-5704 None:intergenic 40.0%
CTACACTGACATTAACATGC+CGG + tig0000212:5717-5736 None:intergenic 40.0%
GTGTCTCTTAGAATTTGGGT+TGG - tig0000212:5736-5755 Msa1335210:CDS 40.0%
!! CCTTACAAGCCGATTTTGTA+GGG + tig0000212:5773-5792 None:intergenic 40.0%
!! ACCTTACAAGCCGATTTTGT+AGG + tig0000212:5774-5793 None:intergenic 40.0%
GTTAAGTAAAGCCACATGGA+TGG + tig0000212:5904-5923 None:intergenic 40.0%
! GCTTGTTAAGTAAAGCCACA+TGG + tig0000212:5908-5927 None:intergenic 40.0%
! CAAGCAACAACTTTAGCTTC+TGG - tig0000212:5923-5942 Msa1335210:CDS 40.0%
CAGGTTAAGGTTGGAATTCA+AGG - tig0000212:6061-6080 Msa1335210:intron 40.0%
GGTTAAGGTTGGAATTCAAG+GGG - tig0000212:6063-6082 Msa1335210:intron 40.0%
ATTCAAGGGGCTGAAGAATT+TGG - tig0000212:6076-6095 Msa1335210:intron 40.0%
! TGACTTCCTTGGAAGTTTTG+TGG - tig0000212:6156-6175 Msa1335210:intron 40.0%
TATCAGCCACAAAACTTCCA+AGG + tig0000212:6165-6184 None:intergenic 40.0%
AACTCACAGTTCACAAAAGG+TGG - tig0000212:6190-6209 Msa1335210:intron 40.0%
!! AAGGTGGAAAATGGCTTGTT+TGG - tig0000212:6206-6225 Msa1335210:CDS 40.0%
GTTGCGCTCTTTCATGTAAT+CGG + tig0000212:6440-6459 None:intergenic 40.0%
TATAAAGCCAGCCAACTTAG+TGG - tig0000212:6609-6628 Msa1335210:intron 40.0%
AACTTAGTGGTCACCAAACA+GGG - tig0000212:6622-6641 Msa1335210:intron 40.0%
GAGTTTAATCTGTCCCTGTT+TGG + tig0000212:6638-6657 None:intergenic 40.0%
! CTTTTCACCAATCTTATGGC+AGG - tig0000212:6804-6823 Msa1335210:intron 40.0%
CTGTTTGATACTTATTCGGC+TGG - tig0000212:6938-6957 Msa1335210:intron 40.0%
CTATCAAGAATTTGGAGGTC+GGG + tig0000212:7088-7107 None:intergenic 40.0%
!! CTTGATAGTGAATCTGGTAG+AGG - tig0000212:7100-7119 Msa1335210:CDS 40.0%
GATAAACGTCCTCTTCTTAG+GGG + tig0000212:7163-7182 None:intergenic 40.0%
CAGATAAACGTCCTCTTCTT+AGG + tig0000212:7165-7184 None:intergenic 40.0%
!! TTTTCTTCTAGGAGGTGATC+AGG - tig0000212:7210-7229 Msa1335210:CDS 40.0%
CAAACACTAGCAAGAACACT+TGG - tig0000212:7412-7431 Msa1335210:CDS 40.0%
! CAAGAACACTTGGTGGTTAT+AGG - tig0000212:7422-7441 Msa1335210:CDS 40.0%
!! TGGTTTGTTGGATGTTGGTG+GGG - tig0000212:5090-5109 Msa1335210:intron 45.0%
AGTCCTGATCGAAGGAAAGA+AGG + tig0000212:5124-5143 None:intergenic 45.0%
ACTGAAGTAGTCCTGATCGA+AGG + tig0000212:5132-5151 None:intergenic 45.0%
GCAAGACCAGGTGTTCTTAT+TGG - tig0000212:5223-5242 Msa1335210:CDS 45.0%
ATGGCACCAATAAGAACACC+TGG + tig0000212:5232-5251 None:intergenic 45.0%
GGACAAGAGAGGAAAATCCA+AGG - tig0000212:5417-5436 Msa1335210:CDS 45.0%
GAGGAAAATCCAAGGCAACA+AGG - tig0000212:5425-5444 Msa1335210:CDS 45.0%
TCGGATTGAAGATGTGTCCA+CGG - tig0000212:5622-5641 Msa1335210:CDS 45.0%
!! CCCTACAAAATCGGCTTGTA+AGG - tig0000212:5770-5789 Msa1335210:CDS 45.0%
GGTCCCTTCACAATGTCTAT+CGG - tig0000212:5854-5873 Msa1335210:CDS 45.0%
GTCCCTTCACAATGTCTATC+GGG - tig0000212:5855-5874 Msa1335210:CDS 45.0%
CTCCCGATAGACATTGTGAA+GGG + tig0000212:5860-5879 None:intergenic 45.0%
AGGAAGTCAGCACATGTTTC+AGG + tig0000212:6145-6164 None:intergenic 45.0%
!! GAAACATGTGCTGACTTCCT+TGG - tig0000212:6145-6164 Msa1335210:intron 45.0%
TGGAGAGTTATCCGTATCAC+AGG - tig0000212:6399-6418 Msa1335210:intron 45.0%
GGAGAGTTATCCGTATCACA+GGG - tig0000212:6400-6419 Msa1335210:intron 45.0%
AGTACGATCTCCCTGTGATA+CGG + tig0000212:6413-6432 None:intergenic 45.0%
ATGTTTGGACGTGTGTTGCA+AGG - tig0000212:6484-6503 Msa1335210:intron 45.0%
! CTGTTTGGTGACCACTAAGT+TGG + tig0000212:6623-6642 None:intergenic 45.0%
CAACTTAGTGGTCACCAAAC+AGG - tig0000212:6621-6640 Msa1335210:intron 45.0%
CGTAATTCTTTCCGATCCGA+AGG + tig0000212:6684-6703 None:intergenic 45.0%
GCAATAGTCGGGATCCAAAA+GGG + tig0000212:6719-6738 None:intergenic 45.0%
! TGGGAGTACATAGAGTTCTG+GGG + tig0000212:6743-6762 None:intergenic 45.0%
! CTGGGAGTACATAGAGTTCT+GGG + tig0000212:6744-6763 None:intergenic 45.0%
! TCTGGGAGTACATAGAGTTC+TGG + tig0000212:6745-6764 None:intergenic 45.0%
!! GAGGACTTGGTGTTTCTTCT+GGG + tig0000212:6762-6781 None:intergenic 45.0%
GGTGAAAAGAACGCAGCAAT+TGG + tig0000212:6793-6812 None:intergenic 45.0%
ATAGTGAATCTGGTAGAGGC+TGG - tig0000212:7104-7123 Msa1335210:CDS 45.0%
TAGTGAATCTGGTAGAGGCT+GGG - tig0000212:7105-7124 Msa1335210:CDS 45.0%
ACACTAGCAAGAACACTTGG+TGG - tig0000212:7415-7434 Msa1335210:CDS 45.0%
ATAGGAAGACGTGGCAAGAG+AGG - tig0000212:4805-4824 Msa1335210:three_prime_UTR 50.0%
!! GAATGTGGTGGATGTTGAGG+TGG - tig0000212:5396-5415 Msa1335210:CDS 50.0%
GATGTTGAGGTGGACAAGAG+AGG - tig0000212:5406-5425 Msa1335210:CDS 50.0%
GCTATGTACCACAGACACCT+CGG - tig0000212:5603-5622 Msa1335210:intron 50.0%
! TCTTCAATCCGAGGTGTCTG+TGG + tig0000212:5614-5633 None:intergenic 50.0%
GTGGACACATCTTCAATCCG+AGG + tig0000212:5623-5642 None:intergenic 50.0%
TTGAAGATGTGTCCACGGCT+TGG - tig0000212:5627-5646 Msa1335210:CDS 50.0%
ATATGTGTCATGCCAAGCCG+TGG + tig0000212:5642-5661 None:intergenic 50.0%
GCTCCCGATAGACATTGTGA+AGG + tig0000212:5861-5880 None:intergenic 50.0%
! TTGGTGACCACTAAGTTGGC+TGG + tig0000212:6619-6638 None:intergenic 50.0%
TTGGTGCAGCAACAGACCTT+CGG - tig0000212:6665-6684 Msa1335210:intron 50.0%
GGCAATAGTCGGGATCCAAA+AGG + tig0000212:6720-6739 None:intergenic 50.0%
!! GGAGTACATAGAGTTCTGGG+GGG + tig0000212:6741-6760 None:intergenic 50.0%
! GGGAGTACATAGAGTTCTGG+GGG + tig0000212:6742-6761 None:intergenic 50.0%
!! GGAGGACTTGGTGTTTCTTC+TGG + tig0000212:6763-6782 None:intergenic 50.0%
CAAAGCAGCAGGAGACCTTA+AGG + tig0000212:6993-7012 None:intergenic 50.0%
GAAAGAGGTCCCCTAAGAAG+AGG - tig0000212:7151-7170 Msa1335210:CDS 50.0%
GGGTTCCAACCTTGTTGCCT+TGG + tig0000212:5437-5456 None:intergenic 55.0%
!! CAGGTGCTGCTCTAGATAGC+CGG + tig0000212:6126-6145 None:intergenic 55.0%
GCAGCAACAGACCTTCGGAT+CGG - tig0000212:6670-6689 Msa1335210:intron 55.0%
AGTCGGGATCCAAAAGGGTG+CGG + tig0000212:6714-6733 None:intergenic 55.0%
!! AGTTCTGGGGGGCAATAGTC+GGG + tig0000212:6730-6749 None:intergenic 55.0%
!! GAGTTCTGGGGGGCAATAGT+CGG + tig0000212:6731-6750 None:intergenic 55.0%
AAGAACGCAGCAATTGGCGC+TGG + tig0000212:6787-6806 None:intergenic 55.0%
GCAGCAGGAGACCTTAAGGT+TGG + tig0000212:6989-7008 None:intergenic 55.0%
ATCTGGTAGAGGCTGGGACT+TGG - tig0000212:7111-7130 Msa1335210:CDS 55.0%
! CGTTCCTGACCGCACCCTTT+TGG - tig0000212:6702-6721 Msa1335210:intron 60.0%
! GGATCCAAAAGGGTGCGGTC+AGG + tig0000212:6709-6728 None:intergenic 60.0%
!! ATTGGCGCTGGTGGAGGACT+TGG + tig0000212:6775-6794 None:intergenic 60.0%
! AACGCAGCAATTGGCGCTGG+TGG + tig0000212:6784-6803 None:intergenic 60.0%
! GGAGGGAGTATACTCGCCTC+AGG - tig0000212:7062-7081 Msa1335210:CDS 60.0%
GAATTTGGAGGTCGGGCCTG+AGG + tig0000212:7081-7100 None:intergenic 60.0%
!! GCAGCAATTGGCGCTGGTGG+AGG + tig0000212:6781-6800 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
tig0000212 gene 4805 7625 4805 ID=Msa1335210;Name=Msa1335210
tig0000212 mRNA 4805 7625 4805 ID=Msa1335210-mRNA-1;Parent=Msa1335210;Name=Msa1335210-mRNA-1;_AED=0.04;_eAED=0.04;_QI=70|1|1|1|0.6|0.5|6|229|513
tig0000212 exon 4805 4866 4805 ID=Msa1335210-mRNA-1:exon:46;Parent=Msa1335210-mRNA-1
tig0000212 exon 4893 5046 4893 ID=Msa1335210-mRNA-1:exon:45;Parent=Msa1335210-mRNA-1
tig0000212 exon 5144 5507 5144 ID=Msa1335210-mRNA-1:exon:44;Parent=Msa1335210-mRNA-1
tig0000212 exon 5605 6009 5605 ID=Msa1335210-mRNA-1:exon:43;Parent=Msa1335210-mRNA-1
tig0000212 exon 6193 6366 6193 ID=Msa1335210-mRNA-1:exon:42;Parent=Msa1335210-mRNA-1
tig0000212 exon 6944 7625 6944 ID=Msa1335210-mRNA-1:exon:41;Parent=Msa1335210-mRNA-1
tig0000212 five_prime_UTR 7556 7625 7556 ID=Msa1335210-mRNA-1:five_prime_utr;Parent=Msa1335210-mRNA-1
tig0000212 CDS 6944 7555 6944 ID=Msa1335210-mRNA-1:cds;Parent=Msa1335210-mRNA-1
tig0000212 CDS 6193 6366 6193 ID=Msa1335210-mRNA-1:cds;Parent=Msa1335210-mRNA-1
tig0000212 CDS 5605 6009 5605 ID=Msa1335210-mRNA-1:cds;Parent=Msa1335210-mRNA-1
tig0000212 CDS 5157 5507 5157 ID=Msa1335210-mRNA-1:cds;Parent=Msa1335210-mRNA-1
tig0000212 three_prime_UTR 5144 5156 5144 ID=Msa1335210-mRNA-1:three_prime_utr;Parent=Msa1335210-mRNA-1
tig0000212 three_prime_UTR 4893 5046 4893 ID=Msa1335210-mRNA-1:three_prime_utr;Parent=Msa1335210-mRNA-1
tig0000212 three_prime_UTR 4805 4866 4805 ID=Msa1335210-mRNA-1:three_prime_utr;Parent=Msa1335210-mRNA-1
Gene Sequence

>Msa1335210

ATGAATGAGCATCATATCATAACAAAAACAATAATGGTTTCTTTGCTTCATCCAACTCCAACTGTTACAACTATACTTAAGCAGCGAACATCAACAATCTGTTTCTTCTGTCCCTTAAAACATACAAATGTTTCTTTCTTAACTAACACAAACACAAACCGTGTCAATACCAACACTACAAAGTGTAATGCATTTTTTGATAATAATTTCACCAATGGTTTGTTGGATGTTGGTGGGGACCACATTCCTTCTTTCCTTCGATCAGGACTACTTCAGTTTCAAGAATTATCAGACATGCAAAGATGGGAGTTTCTTCTTTTTGGTGGACTCATATGGATATACTTAACTGCAAGACCAGGTGTTCTTATTGGTGCCATTGATGCTTACCTTTTTGCTCCTCTTCAACTTGGTTTTGCTAATTTATCTGGAAGGAGAAATTTGAAGACCGGTGATTTTCTTGTTGGAGATAAAATCGGTGAAGGGTCATTTGGTGTTGTTTATTCTGGTGTTTTGGTCTCAAAGAATGTGGTGGATGTTGAGGTGGACAAGAGAGGAAAATCCAAGGCAACAAGGTTGGAACCCAAAACTAAGGATAAAGTTATTCTCAAAAAGGTTAAGGTTGGAATTCAAGGGGCTGAAGAATTTGGTGAATTTGAGGAATGGTTCAATTACCGGCTATCTAGAGCAGCACCTGAAACATGTGCTGACTTCCTTGGAAGTTTTGTGGCTGATAAAACAAACTCACAGTTCACAAAAGGTGGAAAATGGCTTGTTTGGAAATTTGAGGGAGATCGTACTCTTGCCGATTACATGAAAGAGCGCAACTTCCCTTCAAACTTAGAATCTGTCATGTTTGGACGTGTGTTGCAAGGCGTAGATTCTTCTAGACGAAATGCATTGATCATCAAGCAAATCATGCGCCAGATAATTACTTCTCTTAAGAAAATTCATGATACAGGCATTGTTCACAGAGATATAAAGCCAGCCAACTTAGTGGTCACCAAACAGGGACAGATTAAACTCATTGATTTTGGTGCAGCAACAGACCTTCGGATCGGAAAGAATTACGTTCCTGACCGCACCCTTTTGGATCCCGACTATTGCCCCCCAGAACTCTATGTACTCCCAGAAGAAACACCAAGTCCTCCACCAGCGCCAATTGCTGCGTTCTTTTCACCAATCTTATGGCAGTTAAACAGCCCTGATCTGTTTGATACTTATTCGGCTGGGATTGTACTACTTCAAATGGCAATACCAACCTTAAGGTCTCCTGCTGCTTTGAAGAATTTTAATTTGGAAATAAAAACCTGTGGATATGATTTGAAAAAATGGAGGGAGTATACTCGCCTCAGGCCCGACCTCCAAATTCTTGATAGTGAATCTGGTAGAGGCTGGGACTTGGCAACAAAGCTTATATCTGAAAGAGGTCCCCTAAGAAGAGGACGTTTATCTGCTGCTTCAGCTTTGAGACATCCTTATTTTCTTCTAGGAGGTGATCAGGCAGCTGCAGTTCTTTCAAAATTAAGCTTAAGTAGAAAGTAA

Protein sequence

>Msa1335210

MNEHHIITKTIMVSLLHPTPTVTTILKQRTSTICFFCPLKHTNVSFLTNTNTNRVNTNTTKCNAFFDNNFTNGLLDVGGDHIPSFLRSGLLQFQELSDMQRWEFLLFGGLIWIYLTARPGVLIGAIDAYLFAPLQLGFANLSGRRNLKTGDFLVGDKIGEGSFGVVYSGVLVSKNVVDVEVDKRGKSKATRLEPKTKDKVILKKVKVGIQGAEEFGEFEEWFNYRLSRAAPETCADFLGSFVADKTNSQFTKGGKWLVWKFEGDRTLADYMKERNFPSNLESVMFGRVLQGVDSSRRNALIIKQIMRQIITSLKKIHDTGIVHRDIKPANLVVTKQGQIKLIDFGAATDLRIGKNYVPDRTLLDPDYCPPELYVLPEETPSPPPAPIAAFFSPILWQLNSPDLFDTYSAGIVLLQMAIPTLRSPAALKNFNLEIKTCGYDLKKWREYTRLRPDLQILDSESGRGWDLATKLISERGPLRRGRLSAASALRHPYFLLGGDQAAAVLSKLSLSRK*