AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1106830


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1106830 MtrunA17_Chr7g0239511 89.098 266 19 1 42 297 1 266 4.80e-177 489
Msa1106830 MtrunA17_Chr7g0239501 84.211 266 32 1 42 297 1 266 3.43e-166 461
Msa1106830 MtrunA17_Chr7g0239451 75.849 265 54 1 42 296 1 265 8.70e-148 415
Msa1106830 MtrunA17_Chr7g0239491 73.106 264 61 2 42 296 1 263 1.81e-141 399
Msa1106830 MtrunA17_Chr7g0239481 72.932 266 61 2 42 297 1 265 2.93e-137 388
Msa1106830 MtrunA17_Chr7g0239461 59.848 264 48 3 42 296 1 215 4.18e-105 305
Msa1106830 MtrunA17_Chr3g0112151 57.576 264 106 1 40 297 69 332 1.08e-103 306
Msa1106830 MtrunA17_Chr4g0032141 58.333 252 99 1 52 297 51 302 2.31e-103 304
Msa1106830 MtrunA17_Chr3g0112271 56.705 261 107 1 43 297 3 263 6.03e-101 296
Msa1106830 MtrunA17_Chr3g0112261 57.031 256 104 2 48 297 10 265 2.97e-100 295
Msa1106830 MtrunA17_Chr3g0112171 58.300 247 97 2 57 297 15 261 2.62e-98 290
Msa1106830 MtrunA17_Chr3g0112141 57.317 246 99 2 57 296 17 262 1.56e-93 278
Msa1106830 MtrunA17_Chr4g0032181 53.680 231 101 1 73 297 17 247 4.03e-84 253
Msa1106830 MtrunA17_Chr7g0259521 32.000 250 158 7 57 295 6 254 3.33e-25 101
Msa1106830 MtrunA17_Chr4g0075531 33.333 249 149 8 57 295 7 248 1.32e-24 99.8
Msa1106830 MtrunA17_Chr7g0259531 31.783 258 156 6 53 295 7 259 2.12e-24 99.4
Msa1106830 MtrunA17_Chr3g0122901 29.918 244 158 6 63 297 81 320 4.76e-23 96.7
Msa1106830 MtrunA17_Chr8g0357481 29.249 253 164 6 57 295 14 265 1.31e-20 89.7
Msa1106830 MtrunA17_Chr7g0249571 31.694 183 119 4 64 241 45 226 8.47e-20 87.8
Msa1106830 MtrunA17_Chr3g0112321 50.538 93 36 2 189 278 2 87 8.62e-20 82.0
Msa1106830 MtrunA17_Chr1g0182511 30.588 255 156 6 57 295 14 263 2.67e-19 85.5
Msa1106830 MtrunA17_Chr4g0074511 29.730 259 158 7 57 297 40 292 2.27e-18 83.2
Msa1106830 MtrunA17_Chr0c30g0494101 30.000 260 154 8 57 297 40 290 1.19e-17 81.3
Msa1106830 MtrunA17_Chr4g0026001 29.961 257 153 10 57 297 14 259 2.92e-17 79.7
Msa1106830 MtrunA17_Chr6g0459301 28.625 269 170 8 42 295 1 262 1.57e-16 77.8
Msa1106830 MtrunA17_Chr4g0028911 27.843 255 169 8 57 297 11 264 1.15e-15 75.5
Msa1106830 MtrunA17_Chr4g0028921 27.843 255 169 7 57 297 11 264 1.23e-15 75.5
Msa1106830 MtrunA17_Chr6g0459261 27.636 275 170 8 39 295 10 273 1.78e-15 75.1
Msa1106830 MtrunA17_Chr4g0025971 28.740 254 160 8 57 297 14 259 6.32e-15 73.2
Msa1106830 MtrunA17_Chr4g0044111 27.170 265 171 8 48 297 4 261 1.43e-14 72.4
Msa1106830 MtrunA17_Chr7g0252031 30.268 261 153 9 57 296 35 287 1.66e-14 72.4
Msa1106830 MtrunA17_Chr1g0191751 26.587 252 168 7 57 294 101 349 1.89e-14 72.8
Msa1106830 MtrunA17_Chr6g0459281 27.341 267 175 8 42 295 1 261 4.76e-14 70.9
Msa1106830 MtrunA17_Chr7g0272961 26.848 257 167 7 57 297 40 291 6.52e-14 70.9
Msa1106830 MtrunA17_Chr4g0044131 28.295 258 157 10 57 296 8 255 7.19e-14 70.5
Msa1106830 MtrunA17_Chr8g0355281 28.571 196 124 7 57 240 69 260 1.09e-13 70.5
Msa1106830 MtrunA17_Chr6g0459351 27.509 269 172 9 42 295 1 261 1.52e-13 69.3
Msa1106830 MtrunA17_Chr7g0266981 27.969 261 174 6 48 297 4 261 1.56e-13 69.3
Msa1106830 MtrunA17_Chr4g0025981 28.185 259 153 9 58 297 42 286 1.97e-13 69.7
Msa1106830 MtrunA17_Chr6g0459271 27.778 252 166 7 57 295 13 261 2.64e-12 65.9
Msa1106830 MtrunA17_Chr7g0267011 29.319 191 120 7 57 240 8 190 5.99e-12 63.5
Msa1106830 MtrunA17_Chr3g0131521 33.784 148 95 3 53 199 28 173 1.46e-11 63.9
Msa1106830 MtrunA17_Chr6g0459331 26.984 252 168 7 57 295 13 261 2.63e-11 62.8
Msa1106830 MtrunA17_Chr8g0386201 28.194 227 143 7 56 265 44 267 2.90e-11 63.5
Msa1106830 MtrunA17_Chr7g0268591 27.692 260 160 6 57 296 33 284 4.56e-11 62.4
Msa1106830 MtrunA17_Chr1g0160511 34.228 149 93 4 53 199 33 178 8.48e-11 61.6
Msa1106830 MtrunA17_Chr1g0171831 25.896 251 164 8 57 287 14 262 8.52e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1106830 AT5G06060.1 57.540 252 101 1 52 297 4 255 1.80e-105 308
Msa1106830 AT1G07440.1 57.143 252 103 2 51 297 6 257 2.93e-102 300
Msa1106830 AT2G29360.1 55.725 262 110 2 42 297 1 262 1.20e-98 291
Msa1106830 AT2G29290.2 55.159 252 107 2 52 297 2 253 3.88e-97 287
Msa1106830 AT2G29340.2 54.365 252 109 2 52 297 2 253 1.25e-96 285
Msa1106830 AT2G29300.1 54.545 253 108 2 52 297 2 254 1.42e-96 285
Msa1106830 AT2G29320.1 55.512 254 105 3 52 297 7 260 2.02e-96 285
Msa1106830 AT2G29340.1 54.365 252 109 2 52 297 2 253 2.59e-96 286
Msa1106830 AT2G29260.1 54.980 251 107 1 53 297 64 314 3.39e-96 286
Msa1106830 AT2G29300.2 54.762 252 107 2 52 296 2 253 7.45e-96 285
Msa1106830 AT2G30670.1 53.571 252 111 1 52 297 2 253 2.36e-94 280
Msa1106830 AT2G29350.1 55.556 252 107 2 51 297 9 260 1.51e-93 278
Msa1106830 AT2G29330.1 54.510 255 104 3 52 297 2 253 2.90e-93 277
Msa1106830 AT2G29150.1 53.585 265 110 4 42 297 1 261 3.04e-93 277
Msa1106830 AT2G29310.1 53.571 252 111 1 52 297 2 253 3.10e-93 277
Msa1106830 AT2G29370.1 54.297 256 110 2 49 297 7 262 3.35e-93 277
Msa1106830 AT1G07450.1 53.600 250 109 2 54 297 5 253 2.71e-92 275
Msa1106830 AT2G29320.2 53.879 232 100 2 73 297 11 242 6.95e-85 255
Msa1106830 AT2G29290.1 53.043 230 102 2 74 297 7 236 4.45e-83 250
Msa1106830 AT2G29310.2 51.515 231 106 1 73 297 21 251 2.83e-79 241
Msa1106830 AT2G29340.3 57.447 188 80 0 52 239 2 189 6.40e-77 233
Msa1106830 AT2G29340.4 57.447 188 80 0 52 239 2 189 6.40e-77 233
Msa1106830 AT2G29350.3 53.394 221 98 2 82 297 2 222 1.91e-76 233
Msa1106830 AT2G29320.3 58.947 190 76 2 52 239 7 196 7.27e-76 231
Msa1106830 AT2G29350.2 58.730 189 78 0 51 239 9 197 2.51e-75 230
Msa1106830 AT2G29310.3 53.623 207 87 1 52 258 2 199 2.29e-74 227
Msa1106830 AT1G07440.2 58.537 164 68 0 51 214 6 169 2.32e-66 205
Msa1106830 AT2G29310.4 51.075 186 82 1 73 258 21 197 4.52e-60 190
Msa1106830 AT2G29170.1 67.778 90 29 0 54 143 13 102 2.74e-39 134
Msa1106830 AT3G03980.1 33.962 265 158 4 48 295 5 269 9.29e-33 122
Msa1106830 AT5G18210.1 33.202 253 156 5 56 295 7 259 7.33e-30 114
Msa1106830 AT4G13180.1 34.783 253 151 7 57 297 13 263 5.61e-28 109
Msa1106830 AT5G18210.2 32.157 255 147 6 56 297 7 248 2.69e-26 105
Msa1106830 AT4G05530.1 32.114 246 156 5 57 295 9 250 1.47e-24 99.8
Msa1106830 AT3G04000.1 34.586 266 154 8 48 294 5 269 9.07e-23 95.5
Msa1106830 AT1G24360.1 31.837 245 152 8 63 297 80 319 9.39e-23 96.3
Msa1106830 AT3G05260.1 31.395 258 153 7 57 297 37 287 2.85e-21 91.7
Msa1106830 AT1G54870.2 29.020 255 164 7 57 297 84 335 4.08e-21 92.0
Msa1106830 AT1G54870.1 29.020 255 164 7 57 297 82 333 4.44e-21 92.0
Msa1106830 AT3G12800.1 27.165 254 169 6 57 295 10 262 4.57e-20 88.6
Msa1106830 AT3G55290.1 30.385 260 156 10 57 297 18 271 5.69e-19 85.1
Msa1106830 AT3G55290.2 30.385 260 156 10 57 297 17 270 6.78e-19 85.1
Msa1106830 AT3G03330.1 30.412 194 130 3 53 241 37 230 1.01e-18 85.1
Msa1106830 AT1G63380.4 27.843 255 170 8 57 297 19 273 1.43e-17 81.3
Msa1106830 AT1G63380.3 27.843 255 170 8 57 297 15 269 1.55e-17 81.3
Msa1106830 AT1G63380.1 27.843 255 170 8 57 297 17 271 1.56e-17 81.3
Msa1106830 AT1G63380.2 27.843 255 170 8 57 297 22 276 1.97e-17 80.9
Msa1106830 AT5G50590.2 29.630 189 122 6 57 240 45 227 3.92e-16 76.6
Msa1106830 AT5G50690.2 29.630 189 122 6 57 240 45 227 3.92e-16 76.6
Msa1106830 AT3G55310.1 27.907 258 165 9 57 297 17 270 4.68e-16 77.0
Msa1106830 AT1G62610.4 27.059 255 172 8 57 297 19 273 8.15e-16 76.3
Msa1106830 AT1G62610.2 27.059 255 172 8 57 297 13 267 9.31e-16 76.3
Msa1106830 AT1G62610.3 27.059 255 172 8 57 297 15 269 1.06e-15 75.9
Msa1106830 AT1G62610.1 27.059 255 172 8 57 297 14 268 1.10e-15 75.9
Msa1106830 AT5G50590.1 29.630 189 122 6 57 240 45 227 1.19e-15 76.3
Msa1106830 AT5G50690.1 29.630 189 122 6 57 240 45 227 1.19e-15 76.3
Msa1106830 AT3G06060.1 27.807 187 126 3 57 239 37 218 7.24e-15 74.3
Msa1106830 AT3G06060.2 27.807 187 126 3 57 239 54 235 7.97e-15 74.3
Msa1106830 AT3G47360.1 30.811 185 117 6 61 240 49 227 3.22e-14 72.0
Msa1106830 AT5G04900.1 26.400 250 164 11 6 240 23 267 8.63e-14 71.2
Msa1106830 AT5G65205.1 30.726 179 117 4 63 240 12 184 1.91e-13 69.7
Msa1106830 AT3G03350.2 31.373 153 92 3 92 241 207 349 7.47e-13 68.6
Msa1106830 AT3G51680.1 30.097 206 131 6 42 239 20 220 8.40e-13 68.2
Msa1106830 AT3G42960.1 29.588 267 156 10 52 296 5 261 2.11e-12 66.6
Msa1106830 AT5G10050.1 29.050 179 120 4 63 240 11 183 3.37e-12 65.9
Msa1106830 AT1G49670.2 31.282 195 117 8 59 239 6 197 2.45e-11 64.7
Msa1106830 AT1G49670.1 31.282 195 117 8 59 239 6 197 2.69e-11 64.3
Msa1106830 AT5G50700.1 29.630 189 124 7 56 240 44 227 9.13e-11 62.4
Msa1106830 AT5G50600.1 29.630 189 124 7 56 240 44 227 9.13e-11 62.4
Msa1106830 AT2G47130.1 25.100 251 175 7 57 297 6 253 9.21e-11 61.6

Find 57 sgRNAs with CRISPR-Local

Find 138 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGGAAGAGTTAGCAGAATT+TGG 0.185342 7_3:+47411963 Msa1106830:CDS
ATAATTAAAATTACCTTTAG+AGG 0.208184 7_3:-47413205 None:intergenic
CCATTCCAATGCTAAGTTCT+TGG 0.213276 7_3:-47413336 None:intergenic
GTATACATATCCTCAATTTC+AGG 0.273951 7_3:+47413147 Msa1106830:CDS
GATCAAAGATGGTCACTAAA+AGG 0.312455 7_3:+47411788 Msa1106830:CDS
ACCAATGCTGATATATCTTT+AGG 0.318330 7_3:-47414220 None:intergenic
TTAACAAATGTTTGAAAGAA+TGG 0.322643 7_3:+47412024 Msa1106830:CDS
GTTCTTGGTGCATTGATTCA+TGG 0.329472 7_3:-47413321 None:intergenic
GTATTATCTAAGATGGGTTT+AGG 0.353458 7_3:-47413021 None:intergenic
AATCCTCTATATTCGCTTGT+TGG 0.364402 7_3:+47414513 Msa1106830:three_prime_UTR
TTCATCAGTATTATCTAAGA+TGG 0.370033 7_3:-47413028 None:intergenic
CGTGCTAATGTTGTGGCTCC+TGG 0.373198 7_3:+47413374 Msa1106830:CDS
GGAATGACAGCTCTAGTAAC+TGG 0.387510 7_3:+47411809 Msa1106830:CDS
GCATAATGTTATCGGTGGTT+AGG 0.388723 7_3:+47414482 Msa1106830:intron
AACTGTTAGGTAAACAATGC+TGG 0.396239 7_3:+47412988 Msa1106830:intron
TTTCATGTGAAGAATATTGC+TGG 0.411479 7_3:-47411559 None:intergenic
ATGGTAACCAGACACAAAAT+TGG 0.420948 7_3:-47413073 None:intergenic
GGTGTGCAAGTTGGCACAAA+TGG 0.434463 7_3:-47413092 None:intergenic
CCAGCTTCTTCACACATAAC+CGG 0.436902 7_3:+47414259 Msa1106830:CDS
ATCTGCTGCTATAATTTGTC+CGG 0.441275 7_3:-47414278 None:intergenic
GAAGATATAACAACTACAAT+TGG 0.449713 7_3:+47413048 Msa1106830:CDS
ACAGTAGCTTCAATCTTTCA+AGG 0.454086 7_3:+47412122 Msa1106830:CDS
TCTGTTTACGCAGCCTCTAA+AGG 0.464925 7_3:+47413192 Msa1106830:CDS
CGGAGTTGATAATGCTATCA+AGG 0.484663 7_3:+47414159 Msa1106830:CDS
TTTCCAACAAGCGAATATAG+AGG 0.489503 7_3:-47414516 None:intergenic
ATCAATCAGGTATGCAATTG+TGG 0.492239 7_3:+47411944 Msa1106830:intron
ACTGGTGGAACCCGAGGCAT+AGG 0.498705 7_3:+47411827 Msa1106830:CDS
TGTTCCTAGTCAGTGTGACT+TGG 0.501940 7_3:-47411730 None:intergenic
CCAAGAACTTAGCATTGGAA+TGG 0.520563 7_3:+47413336 Msa1106830:CDS
CAAGAACTTAGCATTGGAAT+GGG 0.525445 7_3:+47413337 Msa1106830:CDS
AGTAAGGTCATCACAGGTCC+AGG 0.529196 7_3:-47413392 None:intergenic
GAGAACTGACCCTATGCCTC+GGG 0.531174 7_3:-47411837 None:intergenic
TCATCAGTATTATCTAAGAT+GGG 0.531379 7_3:-47413027 None:intergenic
CAAACACCTAGTGGTCGGAT+TGG 0.531397 7_3:+47414193 Msa1106830:CDS
ACCTAAAGATATATCAGCAT+TGG 0.531601 7_3:+47414219 Msa1106830:CDS
AGCTTTGAGACCTGAAATTG+AGG 0.537196 7_3:-47413157 None:intergenic
ACTGTTAGGTAAACAATGCT+GGG 0.538511 7_3:+47412989 Msa1106830:intron
CCGGTTATGTGTGAAGAAGC+TGG 0.541993 7_3:-47414259 None:intergenic
TTTCTATAGAAATTAGATGC+CGG 0.544962 7_3:+47414139 Msa1106830:intron
GGTTCTCCAATCCGACCACT+AGG 0.544965 7_3:-47414199 None:intergenic
ATGCACCAAGAACTTAGCAT+TGG 0.554507 7_3:+47413331 Msa1106830:CDS
TTGAAAGAATGGAAAGGCAA+AGG 0.557601 7_3:+47412035 Msa1106830:CDS
GCTGCGTAAACAGAAACAAA+AGG 0.566455 7_3:-47413183 None:intergenic
CTTAGCATTGGAATGGGCAA+AGG 0.572011 7_3:+47413343 Msa1106830:CDS
AGAGAACTGACCCTATGCCT+CGG 0.576626 7_3:-47411838 None:intergenic
GCAGCTTCAAAGATCAAAGA+TGG 0.579135 7_3:+47411777 Msa1106830:CDS
CTTGATAGCATTATCAACTC+CGG 0.581783 7_3:-47414158 None:intergenic
TAATATTCGTGCTAATGTTG+TGG 0.584061 7_3:+47413367 Msa1106830:CDS
ACAACCAAGTCACACTGACT+AGG 0.587408 7_3:+47411726 Msa1106830:CDS
CAAATTATAGCAGCAGATGG+TGG 0.608676 7_3:+47414283 Msa1106830:CDS
CTGGTGGAACCCGAGGCATA+GGG 0.613722 7_3:+47411828 Msa1106830:CDS
CTAGTAACTGGTGGAACCCG+AGG 0.629591 7_3:+47411821 Msa1106830:CDS
GGACAAATTATAGCAGCAGA+TGG 0.638017 7_3:+47414280 Msa1106830:CDS
AAATGTTTGAAAGAATGGAA+AGG 0.648117 7_3:+47412029 Msa1106830:CDS
TGTCTCAAACACCTAGTGGT+CGG 0.653560 7_3:+47414188 Msa1106830:CDS
ATAGTGTCTCAAACACCTAG+TGG 0.659894 7_3:+47414184 Msa1106830:CDS
ATGACAGCTCTAGTAACTGG+TGG 0.670365 7_3:+47411812 Msa1106830:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAAAATTATTTTTTAAAAT+AGG - chr7_3:47413732-47413751 None:intergenic 0.0%
!!! TATTAAAGTTTTTTTTTGAA+AGG + chr7_3:47412319-47412338 Msa1106830:intron 10.0%
!! TTATTAAAGTTATTAAGTTT+CGG + chr7_3:47412347-47412366 Msa1106830:intron 10.0%
!!! TAAATTTTTTATATTTTTGG+TGG + chr7_3:47412760-47412779 Msa1106830:intron 10.0%
!!! TAACAAAAAAAACATATTTT+TGG + chr7_3:47412796-47412815 Msa1106830:intron 10.0%
!! TATTTGAACAAATAAAAAGT+TGG - chr7_3:47411685-47411704 None:intergenic 15.0%
!!! TAATCATTCAAATTTGATTT+TGG + chr7_3:47412169-47412188 Msa1106830:intron 15.0%
!! TAATTAGACAAAGAAAAAAA+AGG - chr7_3:47412389-47412408 None:intergenic 15.0%
!! ATAATTAAAATTACCTTTAG+AGG - chr7_3:47413208-47413227 None:intergenic 15.0%
!!! CTTAAAAGTGATTTTTTTTA+AGG - chr7_3:47413522-47413541 None:intergenic 15.0%
!!! CAAAAAATATTTTTTTGTAG+AGG + chr7_3:47413621-47413640 Msa1106830:intron 15.0%
!! CATAATTTAGAAATTATGTT+TGG - chr7_3:47413809-47413828 None:intergenic 15.0%
!! TTTCTCTTAAAAAAATTAGT+CGG + chr7_3:47413991-47414010 Msa1106830:intron 15.0%
!! TATTTATTGCATAATGTTAT+CGG + chr7_3:47414474-47414493 Msa1106830:intron 15.0%
!! TTAACAAATGTTTGAAAGAA+TGG + chr7_3:47412024-47412043 Msa1106830:CDS 20.0%
!!! AAATTTTTAAAAACCCACAA+TGG + chr7_3:47412291-47412310 Msa1106830:intron 20.0%
!! CTTTAATAAAATACCATTGT+GGG - chr7_3:47412307-47412326 None:intergenic 20.0%
!! ACTTTAATAAAATACCATTG+TGG - chr7_3:47412308-47412327 None:intergenic 20.0%
!!! CAGTTGACTTTATTATAAAA+TGG - chr7_3:47412589-47412608 None:intergenic 20.0%
!!! ATTTTTTTTTAGAGGATAGT+AGG - chr7_3:47412731-47412750 None:intergenic 20.0%
!!! TTAGCAAGATTTTTTTTTAG+AGG - chr7_3:47412739-47412758 None:intergenic 20.0%
!! TTCTCTTAAAAAAATTAGTC+GGG + chr7_3:47413992-47414011 Msa1106830:intron 20.0%
!! ATAAAAGAATTCAAAAGTTC+AGG - chr7_3:47414079-47414098 None:intergenic 20.0%
!! GATAACATTATGCAATAAAT+AGG - chr7_3:47414475-47414494 None:intergenic 20.0%
! AATTCAAAGTTATGATTGTG+TGG - chr7_3:47411652-47411671 None:intergenic 25.0%
!! TCTTTTGTGAATAATCAATC+AGG + chr7_3:47411931-47411950 Msa1106830:intron 25.0%
! AAATGTTTGAAAGAATGGAA+AGG + chr7_3:47412029-47412048 Msa1106830:CDS 25.0%
! TTATACAATCAAAACAAAGC+AGG + chr7_3:47412237-47412256 Msa1106830:intron 25.0%
! TATACAATCAAAACAAAGCA+GGG + chr7_3:47412238-47412257 Msa1106830:intron 25.0%
! CAATACATTGTAATATGCAT+TGG - chr7_3:47412481-47412500 None:intergenic 25.0%
!!! CTCTTTTTAATTGTACCATT+GGG + chr7_3:47412821-47412840 Msa1106830:intron 25.0%
! ATTGAATTTCTCAAACTGTT+AGG + chr7_3:47412975-47412994 Msa1106830:intron 25.0%
!! TCATCAGTATTATCTAAGAT+GGG - chr7_3:47413030-47413049 None:intergenic 25.0%
! TTCATCAGTATTATCTAAGA+TGG - chr7_3:47413031-47413050 None:intergenic 25.0%
! GAAGATATAACAACTACAAT+TGG + chr7_3:47413048-47413067 Msa1106830:CDS 25.0%
!!! ATCCAGATGCTTTTAAAAAA+GGG - chr7_3:47413116-47413135 None:intergenic 25.0%
!!! TATCCAGATGCTTTTAAAAA+AGG - chr7_3:47413117-47413136 None:intergenic 25.0%
!!! TTTTTAAAAGCATCTGGATA+TGG + chr7_3:47413117-47413136 Msa1106830:CDS 25.0%
! TCATATTATACCCTTTAACT+TGG + chr7_3:47413234-47413253 Msa1106830:intron 25.0%
!!! ATTGCTATTTCTATCTATGT+AGG + chr7_3:47413296-47413315 Msa1106830:intron 25.0%
! CTTAAAAAACCTATAACAGA+CGG - chr7_3:47413489-47413508 None:intergenic 25.0%
! TTTCTATAGAAATTAGATGC+CGG + chr7_3:47414139-47414158 Msa1106830:intron 25.0%
TTTCATGTGAAGAATATTGC+TGG - chr7_3:47411562-47411581 None:intergenic 30.0%
ACTGACTAGGAACAAAAATA+TGG + chr7_3:47411739-47411758 Msa1106830:CDS 30.0%
! TTTCCATCAATTTTTCACGT+TGG - chr7_3:47412103-47412122 None:intergenic 30.0%
ATACAATCAAAACAAAGCAG+GGG + chr7_3:47412239-47412258 Msa1106830:intron 30.0%
! TGTCTAATTAACTAGCTTAG+TGG + chr7_3:47412399-47412418 Msa1106830:intron 30.0%
AACCCTTAAAGGTGAATAAA+CGG + chr7_3:47412432-47412451 Msa1106830:intron 30.0%
!! GCTCTTTTTAATTGTACCAT+TGG + chr7_3:47412820-47412839 Msa1106830:intron 30.0%
! GTATTATCTAAGATGGGTTT+AGG - chr7_3:47413024-47413043 None:intergenic 30.0%
GTATACATATCCTCAATTTC+AGG + chr7_3:47413147-47413166 Msa1106830:CDS 30.0%
TAATATTCGTGCTAATGTTG+TGG + chr7_3:47413367-47413386 Msa1106830:CDS 30.0%
TTACGTTAAACAAACGCAAA+AGG + chr7_3:47413752-47413771 Msa1106830:intron 30.0%
TAACAAACAGACTCTTAGTT+TGG + chr7_3:47413859-47413878 Msa1106830:intron 30.0%
CTAAATTGCCATGTCTAATT+TGG + chr7_3:47414053-47414072 Msa1106830:intron 30.0%
ACCTAAAGATATATCAGCAT+TGG + chr7_3:47414219-47414238 Msa1106830:CDS 30.0%
ACCAATGCTGATATATCTTT+AGG - chr7_3:47414223-47414242 None:intergenic 30.0%
TTATTGCATAATGTTATCGG+TGG + chr7_3:47414477-47414496 Msa1106830:intron 30.0%
CAAAGTTATGATTGTGTGGT+TGG - chr7_3:47411648-47411667 None:intergenic 35.0%
GATCAAAGATGGTCACTAAA+AGG + chr7_3:47411788-47411807 Msa1106830:CDS 35.0%
ATCAATCAGGTATGCAATTG+TGG + chr7_3:47411944-47411963 Msa1106830:intron 35.0%
TTGAAAGAATGGAAAGGCAA+AGG + chr7_3:47412035-47412054 Msa1106830:CDS 35.0%
! GCAAAGGATTTTGTGTAACA+GGG + chr7_3:47412051-47412070 Msa1106830:CDS 35.0%
TGACCAACGTGAAAAATTGA+TGG + chr7_3:47412097-47412116 Msa1106830:CDS 35.0%
ACAGTAGCTTCAATCTTTCA+AGG + chr7_3:47412122-47412141 Msa1106830:CDS 35.0%
! TAATTAACTAGCTTAGTGGC+CGG + chr7_3:47412403-47412422 Msa1106830:intron 35.0%
!! ACCTTTAAGGGTTGATTTTC+CGG - chr7_3:47412425-47412444 None:intergenic 35.0%
ACCCTTAAAGGTGAATAAAC+GGG + chr7_3:47412433-47412452 Msa1106830:intron 35.0%
TCCCGTTTATTCACCTTTAA+GGG - chr7_3:47412437-47412456 None:intergenic 35.0%
TTCCCGTTTATTCACCTTTA+AGG - chr7_3:47412438-47412457 None:intergenic 35.0%
!!! GATTTAGTTTTGTTGAGACG+TGG + chr7_3:47412608-47412627 Msa1106830:intron 35.0%
AATGCTAACAAGTGCTCTTA+GGG - chr7_3:47412648-47412667 None:intergenic 35.0%
AAATGCTAACAAGTGCTCTT+AGG - chr7_3:47412649-47412668 None:intergenic 35.0%
AACTGTTAGGTAAACAATGC+TGG + chr7_3:47412988-47413007 Msa1106830:intron 35.0%
ACTGTTAGGTAAACAATGCT+GGG + chr7_3:47412989-47413008 Msa1106830:intron 35.0%
! ATTGGTACCAATTTTGTGTC+TGG + chr7_3:47413066-47413085 Msa1106830:CDS 35.0%
ATGGTAACCAGACACAAAAT+TGG - chr7_3:47413076-47413095 None:intergenic 35.0%
! TTAAAAAAGGGTGTGCAAGT+TGG - chr7_3:47413104-47413123 None:intergenic 35.0%
!!! CACCCTTTTTTAAAAGCATC+TGG + chr7_3:47413111-47413130 Msa1106830:CDS 35.0%
CTGCAAAGTTCCAAGTTAAA+GGG - chr7_3:47413247-47413266 None:intergenic 35.0%
TCTGCAAAGTTCCAAGTTAA+AGG - chr7_3:47413248-47413267 None:intergenic 35.0%
! CAAGAACTTAGCATTGGAAT+GGG + chr7_3:47413337-47413356 Msa1106830:CDS 35.0%
CATAGTTGTCTCCAAAAGTA+AGG - chr7_3:47413411-47413430 None:intergenic 35.0%
!! CTTACTTTTGGAGACAACTA+TGG + chr7_3:47413409-47413428 Msa1106830:intron 35.0%
AAGTGTTCACGTATTGAGAA+GGG + chr7_3:47413895-47413914 Msa1106830:intron 35.0%
! CTTGATAGCATTATCAACTC+CGG - chr7_3:47414161-47414180 None:intergenic 35.0%
! ATCTGCTGCTATAATTTGTC+CGG - chr7_3:47414281-47414300 None:intergenic 35.0%
AATCCTCTATATTCGCTTGT+TGG + chr7_3:47414513-47414532 Msa1106830:three_prime_UTR 35.0%
TTTCCAACAAGCGAATATAG+AGG - chr7_3:47414519-47414538 None:intergenic 35.0%
GCAGCTTCAAAGATCAAAGA+TGG + chr7_3:47411777-47411796 Msa1106830:CDS 40.0%
GTGGAAGAGTTAGCAGAATT+TGG + chr7_3:47411963-47411982 Msa1106830:CDS 40.0%
! GGCAAAGGATTTTGTGTAAC+AGG + chr7_3:47412050-47412069 Msa1106830:CDS 40.0%
! CAAGTTGCAACTTTTTGACG+GGG - chr7_3:47412851-47412870 None:intergenic 40.0%
! GCAAGTTGCAACTTTTTGAC+GGG - chr7_3:47412852-47412871 None:intergenic 40.0%
! CGCAAGTTGCAACTTTTTGA+CGG - chr7_3:47412853-47412872 None:intergenic 40.0%
!! AGCTTTGAGACCTGAAATTG+AGG - chr7_3:47413160-47413179 None:intergenic 40.0%
GCTGCGTAAACAGAAACAAA+AGG - chr7_3:47413186-47413205 None:intergenic 40.0%
!! GTTCTTGGTGCATTGATTCA+TGG - chr7_3:47413324-47413343 None:intergenic 40.0%
ATGCACCAAGAACTTAGCAT+TGG + chr7_3:47413331-47413350 Msa1106830:CDS 40.0%
CCATTCCAATGCTAAGTTCT+TGG - chr7_3:47413339-47413358 None:intergenic 40.0%
! CCAAGAACTTAGCATTGGAA+TGG + chr7_3:47413336-47413355 Msa1106830:CDS 40.0%
! ACCTGTGATGACCTTACTTT+TGG + chr7_3:47413397-47413416 Msa1106830:intron 40.0%
TCCAAAAGTAAGGTCATCAC+AGG - chr7_3:47413401-47413420 None:intergenic 40.0%
! ACAGACTCTTAGTTTGGCAA+AGG + chr7_3:47413865-47413884 Msa1106830:intron 40.0%
CTTCTCAATACGTGAACACT+TGG - chr7_3:47413896-47413915 None:intergenic 40.0%
CAAGTGTTCACGTATTGAGA+AGG + chr7_3:47413894-47413913 Msa1106830:intron 40.0%
AGTTCAGGCCAAATTAGACA+TGG - chr7_3:47414064-47414083 None:intergenic 40.0%
!! CGGAGTTGATAATGCTATCA+AGG + chr7_3:47414159-47414178 Msa1106830:CDS 40.0%
ATAGTGTCTCAAACACCTAG+TGG + chr7_3:47414184-47414203 Msa1106830:CDS 40.0%
GGACAAATTATAGCAGCAGA+TGG + chr7_3:47414280-47414299 Msa1106830:CDS 40.0%
CAAATTATAGCAGCAGATGG+TGG + chr7_3:47414283-47414302 Msa1106830:CDS 40.0%
GCATAATGTTATCGGTGGTT+AGG + chr7_3:47414482-47414501 Msa1106830:intron 40.0%
! ACAACCAAGTCACACTGACT+AGG + chr7_3:47411726-47411745 Msa1106830:CDS 45.0%
TGTTCCTAGTCAGTGTGACT+TGG - chr7_3:47411733-47411752 None:intergenic 45.0%
! GGAATGACAGCTCTAGTAAC+TGG + chr7_3:47411809-47411828 Msa1106830:CDS 45.0%
! ATGACAGCTCTAGTAACTGG+TGG + chr7_3:47411812-47411831 Msa1106830:CDS 45.0%
GCCGGAAAATCAACCCTTAA+AGG + chr7_3:47412421-47412440 Msa1106830:intron 45.0%
TCTGTTTACGCAGCCTCTAA+AGG + chr7_3:47413192-47413211 Msa1106830:CDS 45.0%
! CTTAGCATTGGAATGGGCAA+AGG + chr7_3:47413343-47413362 Msa1106830:CDS 45.0%
ACTTAGCGTCCGTCTGTTAT+AGG + chr7_3:47413477-47413496 Msa1106830:intron 45.0%
TGTCTCAAACACCTAGTGGT+CGG + chr7_3:47414188-47414207 Msa1106830:CDS 45.0%
CCAGCTTCTTCACACATAAC+CGG + chr7_3:47414259-47414278 Msa1106830:CDS 45.0%
!!! AACTAAATTTTTTATATTTT+TGG + chr7_3:47412757-47412776 Msa1106830:intron 5.0%
AGAGAACTGACCCTATGCCT+CGG - chr7_3:47411841-47411860 None:intergenic 50.0%
!!! ACAAAGCAGGGGCTAGCTTT+TGG + chr7_3:47412250-47412269 Msa1106830:intron 50.0%
! TTGCAACTTTTTGACGGGGC+TGG - chr7_3:47412847-47412866 None:intergenic 50.0%
! GGTGTGCAAGTTGGCACAAA+TGG - chr7_3:47413095-47413114 None:intergenic 50.0%
AGTAAGGTCATCACAGGTCC+AGG - chr7_3:47413395-47413414 None:intergenic 50.0%
CAAACACCTAGTGGTCGGAT+TGG + chr7_3:47414193-47414212 Msa1106830:CDS 50.0%
CCGGTTATGTGTGAAGAAGC+TGG - chr7_3:47414262-47414281 None:intergenic 50.0%
CTAGTAACTGGTGGAACCCG+AGG + chr7_3:47411821-47411840 Msa1106830:CDS 55.0%
GAGAACTGACCCTATGCCTC+GGG - chr7_3:47411840-47411859 None:intergenic 55.0%
CGTGCTAATGTTGTGGCTCC+TGG + chr7_3:47413374-47413393 Msa1106830:CDS 55.0%
CAGACGGACGCTAAGTGAAG+AGG - chr7_3:47413473-47413492 None:intergenic 55.0%
GGTTCTCCAATCCGACCACT+AGG - chr7_3:47414202-47414221 None:intergenic 55.0%
ACTGGTGGAACCCGAGGCAT+AGG + chr7_3:47411827-47411846 Msa1106830:CDS 60.0%
CTGGTGGAACCCGAGGCATA+GGG + chr7_3:47411828-47411847 Msa1106830:CDS 60.0%
!!! TTTTGACGGGGCTGGCCCAA+TGG - chr7_3:47412839-47412858 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 47411530 47414546 47411530 ID=Msa1106830;Name=Msa1106830
chr7_3 mRNA 47411530 47414546 47411530 ID=Msa1106830-mRNA-1;Parent=Msa1106830;Name=Msa1106830-mRNA-1;_AED=0.37;_eAED=0.37;_QI=16|0.83|0.85|1|0.66|0.42|7|196|297
chr7_3 exon 47411530 47411580 47411530 ID=Msa1106830-mRNA-1:exon:9678;Parent=Msa1106830-mRNA-1
chr7_3 exon 47411670 47411849 47411670 ID=Msa1106830-mRNA-1:exon:9679;Parent=Msa1106830-mRNA-1
chr7_3 exon 47411953 47412160 47411953 ID=Msa1106830-mRNA-1:exon:9680;Parent=Msa1106830-mRNA-1
chr7_3 exon 47412997 47413213 47412997 ID=Msa1106830-mRNA-1:exon:9681;Parent=Msa1106830-mRNA-1
chr7_3 exon 47413318 47413400 47413318 ID=Msa1106830-mRNA-1:exon:9682;Parent=Msa1106830-mRNA-1
chr7_3 exon 47414148 47414464 47414148 ID=Msa1106830-mRNA-1:exon:9683;Parent=Msa1106830-mRNA-1
chr7_3 exon 47414497 47414546 47414497 ID=Msa1106830-mRNA-1:exon:9684;Parent=Msa1106830-mRNA-1
chr7_3 five_prime_UTR 47411530 47411545 47411530 ID=Msa1106830-mRNA-1:five_prime_utr;Parent=Msa1106830-mRNA-1
chr7_3 CDS 47411546 47411580 47411546 ID=Msa1106830-mRNA-1:cds;Parent=Msa1106830-mRNA-1
chr7_3 CDS 47411670 47411849 47411670 ID=Msa1106830-mRNA-1:cds;Parent=Msa1106830-mRNA-1
chr7_3 CDS 47411953 47412160 47411953 ID=Msa1106830-mRNA-1:cds;Parent=Msa1106830-mRNA-1
chr7_3 CDS 47412997 47413213 47412997 ID=Msa1106830-mRNA-1:cds;Parent=Msa1106830-mRNA-1
chr7_3 CDS 47413318 47413400 47413318 ID=Msa1106830-mRNA-1:cds;Parent=Msa1106830-mRNA-1
chr7_3 CDS 47414148 47414318 47414148 ID=Msa1106830-mRNA-1:cds;Parent=Msa1106830-mRNA-1
chr7_3 three_prime_UTR 47414319 47414464 47414319 ID=Msa1106830-mRNA-1:three_prime_utr;Parent=Msa1106830-mRNA-1
chr7_3 three_prime_UTR 47414497 47414546 47414497 ID=Msa1106830-mRNA-1:three_prime_utr;Parent=Msa1106830-mRNA-1
Gene Sequence

>Msa1106830

ATGATAACAATATCCAGCAATATTCTTCACATGAATTTTGTTTGTATCCAACTTTTTATTTGTTCAAATATTTCAGCTATTTTTCAAATTCACAACCAAGTCACACTGACTAGGAACAAAAATATGGCAGAAACAAAGTTGAGCAGCTTCAAAGATCAAAGATGGTCACTAAAAGGAATGACAGCTCTAGTAACTGGTGGAACCCGAGGCATAGGGTATGCAATTGTGGAAGAGTTAGCAGAATTTGGAGCAAGTGTGCATATATGTTCACGAAATCAAGATGATATTAACAAATGTTTGAAAGAATGGAAAGGCAAAGGATTTTGTGTAACAGGGTCAACTTGTGATTTATTATTGCGTGACCAACGTGAAAAATTGATGGAAACAGTAGCTTCAATCTTTCAAGGAAAACTCAATATTCTAGTAAACAATGCTGGGATATTTGCTCCTAAACCCATCTTAGATAATACTGATGAAGATATAACAACTACAATTGGTACCAATTTTGTGTCTGGTTACCATTTGTGCCAACTTGCACACCCTTTTTTAAAAGCATCTGGATATGGAAGCATAGTATACATATCCTCAATTTCAGGTCTCAAAGCTTTGCCTTTTGTTTCTGTTTACGCAGCCTCTAAAGGAGCCATGAATCAATGCACCAAGAACTTAGCATTGGAATGGGCAAAGGATAATATTCGTGCTAATGTTGTGGCTCCTGGACCTAAATTAGATGCCGGAGTTGATAATGCTATCAAGGATATAGTGTCTCAAACACCTAGTGGTCGGATTGGAGAACCTAAAGATATATCAGCATTGGTTGCTTTTCTTTGTCTTCCAGCTTCTTCACACATAACCGGACAAATTATAGCAGCAGATGGTGGCTTCACTATTTAA

Protein sequence

>Msa1106830

MITISSNILHMNFVCIQLFICSNISAIFQIHNQVTLTRNKNMAETKLSSFKDQRWSLKGMTALVTGGTRGIGYAIVEELAEFGASVHICSRNQDDINKCLKEWKGKGFCVTGSTCDLLLRDQREKLMETVASIFQGKLNILVNNAGIFAPKPILDNTDEDITTTIGTNFVSGYHLCQLAHPFLKASGYGSIVYISSISGLKALPFVSVYAASKGAMNQCTKNLALEWAKDNIRANVVAPGPKLDAGVDNAIKDIVSQTPSGRIGEPKDISALVAFLCLPASSHITGQIIAADGGFTI*