Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0440730 | AES68349.2 | 98.355 | 547 | 9 | 0 | 1 | 547 | 1 | 547 | 0.0 | 1123 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0440730 | sp|P98204|ALA1_ARATH | 69.456 | 478 | 135 | 7 | 73 | 547 | 26 | 495 | 0.0 | 698 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0440730 | G7J0A5 | 98.355 | 547 | 9 | 0 | 1 | 547 | 1 | 547 | 0.0 | 1123 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004480 | Msa0440730 | 0.811839 | 5.728723e-51 | -8.615850e-47 |
| Msa0060690 | Msa0440730 | 0.809614 | 1.734664e-50 | -8.615850e-47 |
| Msa0090380 | Msa0440730 | 0.830214 | 3.331531e-55 | -8.615850e-47 |
| Msa0104810 | Msa0440730 | 0.830176 | 3.403829e-55 | -8.615850e-47 |
| Msa0137860 | Msa0440730 | 0.832494 | 9.155372e-56 | -8.615850e-47 |
| Msa0150620 | Msa0440730 | 0.823107 | 1.654705e-53 | -8.615850e-47 |
| Msa0151170 | Msa0440730 | 0.816071 | 6.681121e-52 | -8.615850e-47 |
| Msa0367860 | Msa0440730 | 0.801501 | 8.741631e-49 | -8.615850e-47 |
| Msa0393100 | Msa0440730 | 0.864493 | 1.168894e-64 | -8.615850e-47 |
| Msa0402800 | Msa0440730 | 0.804339 | 2.264976e-49 | -8.615850e-47 |
| Msa0425610 | Msa0440730 | 0.804746 | 1.862898e-49 | -8.615850e-47 |
| Msa0440730 | Msa0443450 | 0.805787 | 1.127694e-49 | -8.615850e-47 |
| Msa0440730 | Msa0488580 | 0.856406 | 3.287385e-62 | -8.615850e-47 |
| Msa0440730 | Msa0497860 | 0.813083 | 3.062396e-51 | -8.615850e-47 |
| Msa0440730 | Msa0615210 | 0.822114 | 2.816871e-53 | -8.615850e-47 |
| Msa0440730 | Msa0816630 | 0.810279 | 1.247500e-50 | -8.615850e-47 |
| Msa0440730 | Msa0945130 | 0.813435 | 2.563244e-51 | -8.615850e-47 |
| Msa0440730 | Msa1030240 | 0.804456 | 2.141657e-49 | -8.615850e-47 |
| Msa0440730 | Msa1199870 | 0.808489 | 3.021105e-50 | -8.615850e-47 |
| Msa0440730 | Msa1221220 | 0.807129 | 5.878189e-50 | -8.615850e-47 |
| Msa0440730 | Msa1225580 | 0.804475 | 2.121752e-49 | -8.615850e-47 |
| Msa0440730 | Msa1355510 | 0.810659 | 1.032453e-50 | -8.615850e-47 |
| Msa0440730 | Msa1360260 | 0.800644 | 1.308143e-48 | -8.615850e-47 |
| Msa0440730 | Msa1369320 | 0.816558 | 5.197679e-52 | -8.615850e-47 |
| Msa0440730 | Msa1420930 | 0.803100 | 4.094911e-49 | -8.615850e-47 |
| Msa0440730 | Msa1433410 | 0.828225 | 1.012080e-54 | -8.615850e-47 |
| Msa0440730 | Msa1435320 | 0.814785 | 1.290872e-51 | -8.615850e-47 |
| Msa0440730 | Msa1443400 | 0.811642 | 6.322008e-51 | -8.615850e-47 |
| Msa0440730 | Msa1443620 | 0.819839 | 9.408979e-53 | -8.615850e-47 |
| Msa0440730 | Msa1448040 | 0.813539 | 2.431661e-51 | -8.615850e-47 |
| Msa0260530 | Msa0440730 | 0.808815 | 2.573074e-50 | -8.615850e-47 |
| Msa0264680 | Msa0440730 | 0.807159 | 5.792297e-50 | -8.615850e-47 |
| Msa0306310 | Msa0440730 | 0.809799 | 1.582463e-50 | -8.615850e-47 |
| Msa0345890 | Msa0440730 | 0.803886 | 2.814502e-49 | -8.615850e-47 |
| Msa0345980 | Msa0440730 | 0.840284 | 9.538030e-58 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0440730 | MtrunA17_Chr3g0078371 | 98.355 | 547 | 9 | 0 | 1 | 547 | 1 | 547 | 0.0 | 1121 |
| Msa0440730 | MtrunA17_Chr8g0355251 | 77.800 | 500 | 106 | 4 | 50 | 547 | 1 | 497 | 0.0 | 789 |
| Msa0440730 | MtrunA17_Chr7g0244991 | 61.395 | 430 | 160 | 3 | 115 | 539 | 137 | 565 | 5.32e-180 | 543 |
| Msa0440730 | MtrunA17_Chr5g0415271 | 38.462 | 429 | 248 | 7 | 121 | 543 | 24 | 442 | 9.18e-90 | 301 |
| Msa0440730 | MtrunA17_Chr4g0062251 | 37.385 | 436 | 251 | 7 | 120 | 543 | 38 | 463 | 3.33e-87 | 294 |
| Msa0440730 | MtrunA17_Chr8g0363911 | 38.084 | 428 | 250 | 6 | 121 | 543 | 44 | 461 | 7.47e-83 | 282 |
| Msa0440730 | MtrunA17_Chr2g0329991 | 38.498 | 426 | 245 | 5 | 120 | 538 | 40 | 455 | 1.05e-82 | 281 |
| Msa0440730 | MtrunA17_Chr8g0342811 | 37.705 | 427 | 247 | 7 | 120 | 538 | 40 | 455 | 1.56e-81 | 278 |
| Msa0440730 | MtrunA17_Chr6g0450601 | 38.621 | 435 | 245 | 8 | 120 | 542 | 37 | 461 | 1.79e-80 | 275 |
| Msa0440730 | MtrunA17_Chr3g0091611 | 36.636 | 434 | 263 | 5 | 116 | 542 | 31 | 459 | 3.91e-80 | 273 |
| Msa0440730 | MtrunA17_Chr0c05g0492131 | 36.597 | 429 | 261 | 5 | 120 | 541 | 33 | 457 | 8.25e-80 | 273 |
| Msa0440730 | MtrunA17_Chr8g0368691 | 37.688 | 398 | 240 | 3 | 137 | 530 | 67 | 460 | 9.77e-80 | 273 |
| Msa0440730 | MtrunA17_Chr2g0324791 | 33.971 | 418 | 251 | 6 | 121 | 530 | 3 | 403 | 1.40e-65 | 232 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0440730 | AT5G04930.1 | 69.456 | 478 | 135 | 7 | 73 | 547 | 26 | 495 | 0.0 | 698 |
| Msa0440730 | AT3G13900.2 | 40.610 | 426 | 234 | 7 | 121 | 538 | 41 | 455 | 1.01e-96 | 317 |
| Msa0440730 | AT3G13900.3 | 40.610 | 426 | 234 | 7 | 121 | 538 | 41 | 455 | 1.85e-96 | 317 |
| Msa0440730 | AT3G13900.1 | 40.610 | 426 | 234 | 7 | 121 | 538 | 41 | 455 | 8.15e-95 | 316 |
| Msa0440730 | AT1G59820.1 | 39.101 | 445 | 249 | 8 | 105 | 543 | 20 | 448 | 3.62e-93 | 311 |
| Msa0440730 | AT1G54280.2 | 40.047 | 427 | 236 | 7 | 121 | 538 | 41 | 456 | 3.35e-92 | 308 |
| Msa0440730 | AT1G54280.3 | 40.047 | 427 | 236 | 7 | 121 | 538 | 41 | 456 | 3.35e-92 | 308 |
| Msa0440730 | AT1G54280.1 | 40.047 | 427 | 236 | 7 | 121 | 538 | 41 | 456 | 3.35e-92 | 308 |
| Msa0440730 | AT3G27870.2 | 39.372 | 414 | 244 | 5 | 120 | 530 | 37 | 446 | 4.42e-91 | 302 |
| Msa0440730 | AT3G27870.1 | 39.372 | 414 | 244 | 5 | 120 | 530 | 37 | 446 | 2.07e-89 | 300 |
| Msa0440730 | AT1G68710.2 | 37.150 | 428 | 260 | 4 | 120 | 542 | 41 | 464 | 1.03e-86 | 293 |
| Msa0440730 | AT1G68710.1 | 37.150 | 428 | 260 | 4 | 120 | 542 | 41 | 464 | 1.03e-86 | 293 |
| Msa0440730 | AT1G68710.3 | 37.383 | 428 | 259 | 5 | 120 | 542 | 41 | 464 | 1.21e-86 | 293 |
| Msa0440730 | AT1G72700.1 | 37.264 | 424 | 253 | 5 | 120 | 538 | 40 | 455 | 3.00e-86 | 291 |
| Msa0440730 | AT1G72700.3 | 37.264 | 424 | 253 | 5 | 120 | 538 | 40 | 455 | 3.00e-86 | 291 |
| Msa0440730 | AT1G72700.2 | 37.264 | 424 | 253 | 5 | 120 | 538 | 40 | 455 | 3.00e-86 | 291 |
| Msa0440730 | AT1G26130.1 | 38.609 | 417 | 245 | 6 | 120 | 530 | 41 | 452 | 4.35e-85 | 288 |
| Msa0440730 | AT1G26130.2 | 38.609 | 417 | 245 | 6 | 120 | 530 | 41 | 452 | 4.47e-85 | 288 |
| Msa0440730 | AT1G26130.4 | 38.609 | 417 | 245 | 6 | 120 | 530 | 41 | 452 | 4.47e-85 | 288 |
| Msa0440730 | AT1G26130.3 | 38.609 | 417 | 245 | 6 | 120 | 530 | 41 | 452 | 4.47e-85 | 288 |
| Msa0440730 | AT1G17500.2 | 37.617 | 428 | 246 | 6 | 120 | 538 | 40 | 455 | 5.13e-84 | 285 |
| Msa0440730 | AT1G17500.1 | 37.617 | 428 | 246 | 6 | 120 | 538 | 40 | 455 | 5.13e-84 | 285 |
| Msa0440730 | AT3G25610.1 | 36.878 | 442 | 258 | 8 | 120 | 549 | 39 | 471 | 5.56e-82 | 280 |
| Msa0440730 | AT1G13210.1 | 36.321 | 424 | 248 | 8 | 120 | 530 | 37 | 451 | 1.07e-78 | 270 |
| Msa0440730 | AT5G44240.2 | 34.689 | 418 | 248 | 7 | 121 | 530 | 3 | 403 | 8.43e-63 | 224 |
| Msa0440730 | AT5G44240.1 | 34.689 | 418 | 248 | 7 | 121 | 530 | 35 | 435 | 1.50e-62 | 224 |
| Msa0440730 | AT3G27870.3 | 37.597 | 258 | 156 | 3 | 275 | 530 | 1 | 255 | 3.62e-46 | 175 |
Find 106 sgRNAs with CRISPR-Local
Find 202 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCCTCAACTTGCGGTATT+TGG | 0.160646 | 3_3:-8439131 | Msa0440730:CDS |
| TGAATCTGTTGCCTTATTAT+AGG | 0.187667 | 3_3:-8438431 | Msa0440730:CDS |
| TATTGCTTTGTACATTTCTA+TGG | 0.204359 | 3_3:-8438298 | Msa0440730:CDS |
| ATATGGATTTATGGCGAATA+TGG | 0.231340 | 3_3:-8438724 | Msa0440730:CDS |
| TAGGAATATATATGGATTTA+TGG | 0.232364 | 3_3:-8438733 | Msa0440730:CDS |
| ATCCTAACAGGAAGCAATTC+TGG | 0.244279 | 3_3:-8436458 | Msa0440730:CDS |
| TTGAATATTAATGAAGATTT+GGG | 0.249431 | 3_3:-8438186 | Msa0440730:CDS |
| GTTGAACTTGACTTTGATTT+TGG | 0.251496 | 3_3:+8439575 | None:intergenic |
| TTTGAATATTAATGAAGATT+TGG | 0.266623 | 3_3:-8438187 | Msa0440730:CDS |
| ATGAGTAGTTTAAACCATTC+AGG | 0.284184 | 3_3:-8439416 | Msa0440730:CDS |
| AGAAGAAATGGAAGGATATT+CGG | 0.285843 | 3_3:-8438962 | Msa0440730:CDS |
| TACTTATAGTCTTCAACTTC+CGG | 0.312037 | 3_3:+8438390 | None:intergenic |
| CCATTACACATGCCATATCT+AGG | 0.315236 | 3_3:+8436530 | None:intergenic |
| AAATCAAGTTTCCTATAATA+AGG | 0.322804 | 3_3:+8438420 | None:intergenic |
| TATGTCAGTTATAGTTTATC+AGG | 0.336978 | 3_3:-8438331 | Msa0440730:CDS |
| GTAGGAATATATTGATCATT+TGG | 0.337392 | 3_3:+8439620 | None:intergenic |
| AAAGCTATGCTTAACAATTC+AGG | 0.338099 | 3_3:-8438588 | Msa0440730:CDS |
| AAACCGAATAGGAATATATA+TGG | 0.343990 | 3_3:-8438741 | Msa0440730:CDS |
| TTCGATGTCTATTCATTCAA+TGG | 0.350601 | 3_3:-8439471 | Msa0440730:CDS |
| AATCCATATATATTCCTATT+CGG | 0.351031 | 3_3:+8438738 | None:intergenic |
| CAGATAAAGTCGAGAATAAC+AGG | 0.351580 | 3_3:-8439022 | Msa0440730:CDS |
| TTCCAGAATTGCTTCCTGTT+AGG | 0.379645 | 3_3:+8436456 | None:intergenic |
| GAAGACTAGGTATGCGAAAC+AGG | 0.384864 | 3_3:-8438814 | Msa0440730:CDS |
| GAAGAAATGGAAGGATATTC+GGG | 0.386577 | 3_3:-8438961 | Msa0440730:CDS |
| GTAGTTTCATTGAGAAGAAA+TGG | 0.389157 | 3_3:-8438974 | Msa0440730:CDS |
| GTTGAAGACTATAAGTACTA+TGG | 0.403402 | 3_3:-8438384 | Msa0440730:CDS |
| GTGCAAACTATTAATCTTGA+TGG | 0.406142 | 3_3:-8438849 | Msa0440730:CDS |
| ATAGAAATGTACAAAGCAAT+AGG | 0.408488 | 3_3:+8438300 | None:intergenic |
| CTAGATATGGCATGTGTAAT+GGG | 0.412744 | 3_3:-8436529 | Msa0440730:CDS |
| AACTGTTCAAACAAATTCCT+TGG | 0.414617 | 3_3:+8439203 | None:intergenic |
| GGAGCTTGTTCGTGTTGGCC+AGG | 0.428817 | 3_3:-8438277 | Msa0440730:CDS |
| ATCGTCTTCGATCATGAAAT+AGG | 0.432489 | 3_3:+8438254 | None:intergenic |
| AAGGTTCAACCGAGGTATAC+TGG | 0.433990 | 3_3:-8438780 | Msa0440730:CDS |
| CCTAGATATGGCATGTGTAA+TGG | 0.435281 | 3_3:-8436530 | Msa0440730:CDS |
| AATTCCTTGGAATGAAAGTA+AGG | 0.436300 | 3_3:+8439216 | None:intergenic |
| GCAAATTAAGTATGTGTTCT+CGG | 0.442957 | 3_3:-8438163 | Msa0440730:CDS |
| TTGGATGTGGAAATCCTAAC+AGG | 0.444204 | 3_3:-8436470 | Msa0440730:CDS |
| CGTCTGTTTGTGCTGCGGTT+TGG | 0.454477 | 3_3:-8438476 | Msa0440730:CDS |
| ATTTAAGAACATGTTGGATG+TGG | 0.457375 | 3_3:-8436483 | Msa0440730:CDS |
| GCAAGAGGAACAATTCTGTA+AGG | 0.460331 | 3_3:-8439442 | Msa0440730:CDS |
| TCAACCAACATTGTGCTTAG+AGG | 0.467223 | 3_3:-8438672 | Msa0440730:CDS |
| TCGATGTCTATTCATTCAAT+GGG | 0.467354 | 3_3:-8439470 | Msa0440730:CDS |
| CCTGTGAGGTATGGTTCAAA+AGG | 0.476260 | 3_3:-8439383 | Msa0440730:CDS |
| TAGAGATGAAGATGCAAGAT+TGG | 0.476919 | 3_3:-8439318 | Msa0440730:CDS |
| TCTGCACTGAAACTTTGTAT+TGG | 0.477333 | 3_3:+8438212 | None:intergenic |
| CGAAACATAGACCCTAGATA+TGG | 0.488806 | 3_3:-8436542 | Msa0440730:intron |
| ATATGTTTCGATTCTACCGT+TGG | 0.493139 | 3_3:-8439105 | Msa0440730:CDS |
| GTGAGCTTAAGAATACTAGT+TGG | 0.496078 | 3_3:-8438647 | Msa0440730:CDS |
| GATAAACTATAACTGACATA+AGG | 0.496385 | 3_3:+8438334 | None:intergenic |
| TATGTGTTCTCGGATAAAAC+TGG | 0.498039 | 3_3:-8438153 | Msa0440730:CDS |
| TAAGTACTATGGATGGGGAT+TGG | 0.499992 | 3_3:-8438373 | Msa0440730:CDS |
| CAATCCTTACTTTCATTCCA+AGG | 0.502199 | 3_3:-8439220 | Msa0440730:CDS |
| GGTTTGGTTGAAGCGTCATA+AGG | 0.506168 | 3_3:-8438460 | Msa0440730:CDS |
| TACACTTACTGAAAATAAGA+TGG | 0.509982 | 3_3:-8438130 | Msa0440730:CDS |
| TTATCAACTAGTGATCCAAC+TGG | 0.515769 | 3_3:-8438882 | Msa0440730:CDS |
| AAGACTATAAGTACTATGGA+TGG | 0.525277 | 3_3:-8438380 | Msa0440730:CDS |
| TGATTTATTTAAGAACATGT+TGG | 0.525916 | 3_3:-8436489 | Msa0440730:CDS |
| TGAGCTTAAGAATACTAGTT+GGG | 0.530573 | 3_3:-8438646 | Msa0440730:CDS |
| TGCACATATGCAACACCAGT+TGG | 0.534022 | 3_3:+8438867 | None:intergenic |
| TTAAGTGTGAGAAACCGAAT+AGG | 0.534933 | 3_3:-8438752 | Msa0440730:CDS |
| AAGAATACTAGTTGGGCACT+TGG | 0.536283 | 3_3:-8438639 | Msa0440730:CDS |
| CAGTTCCACAAAAGCTGGCA+TGG | 0.536451 | 3_3:-8438073 | Msa0440730:CDS |
| TCTATGGAGCTTGTTCGTGT+TGG | 0.537946 | 3_3:-8438282 | Msa0440730:CDS |
| CTTGGTGTCGCAGTCTATTG+TGG | 0.541163 | 3_3:-8438621 | Msa0440730:CDS |
| GATTACAGTTCCACAAAAGC+TGG | 0.542255 | 3_3:-8438078 | Msa0440730:CDS |
| GACTATAAGTACTATGGATG+GGG | 0.549175 | 3_3:-8438378 | Msa0440730:CDS |
| GTGAGTCTAATTTGAAGACT+AGG | 0.551484 | 3_3:-8438827 | Msa0440730:CDS |
| TATTGATCATTTGGTGTCCG+TGG | 0.555364 | 3_3:+8439629 | None:intergenic |
| TCCATCGAAAAGAAGTAGGC+TGG | 0.557666 | 3_3:-8438562 | Msa0440730:CDS |
| TCTAAGTTCTCTTTGTGACA+TGG | 0.558340 | 3_3:+8439337 | None:intergenic |
| TAATCAGCTTCCTCAACTTG+CGG | 0.560807 | 3_3:-8439138 | Msa0440730:CDS |
| AAAGGTGGTGGTGATTCTGA+AGG | 0.562096 | 3_3:-8439365 | Msa0440730:CDS |
| ATTCAATGGGTTCTAGCAAG+AGG | 0.567625 | 3_3:-8439457 | Msa0440730:CDS |
| AGACTATAAGTACTATGGAT+GGG | 0.568634 | 3_3:-8438379 | Msa0440730:CDS |
| CGTGGAGATTGTAACAAAAG+TGG | 0.569861 | 3_3:+8439647 | None:intergenic |
| CTTCGATCATGAAATAGGCC+TGG | 0.570695 | 3_3:+8438259 | None:intergenic |
| AACTTCATATGGATTCTAAG+AGG | 0.571610 | 3_3:-8439670 | None:intergenic |
| GCTGGCATGGAGAATGAACT+AGG | 0.573529 | 3_3:-8438060 | Msa0440730:CDS |
| CAAGAGGAACAATTCTGTAA+GGG | 0.582022 | 3_3:-8439441 | Msa0440730:CDS |
| GAGCTCCATCGAAAAGAAGT+AGG | 0.587843 | 3_3:-8438566 | Msa0440730:CDS |
| TTTCATTGAGAAGAAATGGA+AGG | 0.588212 | 3_3:-8438970 | Msa0440730:CDS |
| CATTACACATGCCATATCTA+GGG | 0.588755 | 3_3:+8436531 | None:intergenic |
| CTTCCAAATACCGCAAGTTG+AGG | 0.589139 | 3_3:+8439128 | None:intergenic |
| AAATGGAAGGATATTCGGGT+TGG | 0.592314 | 3_3:-8438957 | Msa0440730:CDS |
| AACTTGACCGAACTCAACAC+CGG | 0.593189 | 3_3:+8439535 | None:intergenic |
| AGGTATGCGAAACAGGAGAC+AGG | 0.600615 | 3_3:-8438807 | Msa0440730:CDS |
| ACCGGAAAATGTTACTGTGT+TGG | 0.609085 | 3_3:+8439553 | None:intergenic |
| GAAACAGGAGACAGGTTCAA+AGG | 0.611978 | 3_3:-8438799 | Msa0440730:CDS |
| CTAGGTGAATACTCGGTGCA+AGG | 0.612171 | 3_3:-8438042 | Msa0440730:intron |
| ACATCCTCTAAGCACAATGT+TGG | 0.612946 | 3_3:+8438668 | None:intergenic |
| TGAATATTAATGAAGATTTG+GGG | 0.616519 | 3_3:-8438185 | Msa0440730:CDS |
| AGGTATGGTTCAAAAGGTGG+TGG | 0.619167 | 3_3:-8439377 | Msa0440730:CDS |
| ATGGCGAATATGGAAATCGA+TGG | 0.624834 | 3_3:-8438714 | Msa0440730:CDS |
| GATGGTAAGAAGTTATCACT+TGG | 0.629993 | 3_3:-8438696 | Msa0440730:CDS |
| TTTCAATGTGCAAGCATACG+AGG | 0.630431 | 3_3:-8438105 | Msa0440730:CDS |
| GAATGAACTAGGTGAATACT+CGG | 0.632239 | 3_3:-8438049 | Msa0440730:CDS |
| TAAGCATAGCTTTAGTCTCG+CGG | 0.643603 | 3_3:+8438598 | None:intergenic |
| AAGGTGGTGGTGATTCTGAA+GGG | 0.646912 | 3_3:-8439364 | Msa0440730:CDS |
| AGACGATCGATTGTATGATG+AGG | 0.647562 | 3_3:-8438238 | Msa0440730:CDS |
| GTGAGGTATGGTTCAAAAGG+TGG | 0.648541 | 3_3:-8439380 | Msa0440730:CDS |
| AATCACGTCTGTTTGTGCTG+CGG | 0.649507 | 3_3:-8438481 | Msa0440730:CDS |
| AAAGAAGTAGGCTGGAGACG+CGG | 0.659460 | 3_3:-8438554 | Msa0440730:CDS |
| ACAAACAGAACAAAAGCCAA+CGG | 0.667705 | 3_3:+8439089 | None:intergenic |
| TTAATCAAACCAGTATACCT+CGG | 0.685339 | 3_3:+8438771 | None:intergenic |
| GATAACAAAACAATATCACA+AGG | 0.711577 | 3_3:+8438900 | None:intergenic |
| CAGGTTCAAAGGTTCAACCG+AGG | 0.752179 | 3_3:-8438788 | Msa0440730:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTAATTATTATTAAATAA+AGG | - | chr3_3:8438755-8438774 | Msa0440730:CDS | 0.0% |
| !!! | TTTTAATTATTATTAAATAA+AGG | - | chr3_3:8438755-8438774 | Msa0440730:CDS | 0.0% |
| !! | TTATAATTGAAATAAGATAA+AGG | - | chr3_3:8438165-8438184 | Msa0440730:CDS | 10.0% |
| !! | TTTGAATATTAATGAAGATT+TGG | - | chr3_3:8437905-8437924 | Msa0440730:intron | 15.0% |
| !! | TTGAATATTAATGAAGATTT+GGG | - | chr3_3:8437906-8437925 | Msa0440730:intron | 15.0% |
| !!! | TTAACATTATTTTTTTCTCA+CGG | + | chr3_3:8438456-8438475 | None:intergenic | 15.0% |
| !! | CAAAATATAATGTTAAAGAT+TGG | - | chr3_3:8438524-8438543 | Msa0440730:CDS | 15.0% |
| !!! | ATTGTTTACGATTAATTTTA+AGG | - | chr3_3:8438639-8438658 | Msa0440730:CDS | 15.0% |
| !!! | TTTTTTTATATAAAGAGAAC+CGG | - | chr3_3:8438728-8438747 | Msa0440730:CDS | 15.0% |
| !!! | TTTTTTTATATAAAGAGAAC+CGG | - | chr3_3:8438728-8438747 | Msa0440730:CDS | 15.0% |
| !! | TTGATTAAAGATAGATAAAT+AGG | - | chr3_3:8439408-8439427 | Msa0440730:CDS | 15.0% |
| !! | TGATTAAAGATAGATAAATA+GGG | - | chr3_3:8439409-8439428 | Msa0440730:CDS | 15.0% |
| !!! | TTTTTTACCTTTAAAATATG+TGG | + | chr3_3:8439508-8439527 | None:intergenic | 15.0% |
| !!! | CATATTTTAAAGGTAAAAAA+AGG | - | chr3_3:8439508-8439527 | Msa0440730:CDS | 15.0% |
| !!! | AATGAGAATTTTGAGTTTTT+CGG | - | chr3_3:8436823-8436842 | Msa0440730:intron | 20.0% |
| !! | AATCCATATATATTCCTATT+CGG | + | chr3_3:8437357-8437376 | None:intergenic | 20.0% |
| !! | TAGGAATATATATGGATTTA+TGG | - | chr3_3:8437359-8437378 | Msa0440730:intron | 20.0% |
| !! | AAATCAAGTTTCCTATAATA+AGG | + | chr3_3:8437675-8437694 | None:intergenic | 20.0% |
| !! | TGAATATTAATGAAGATTTG+GGG | - | chr3_3:8437907-8437926 | Msa0440730:intron | 20.0% |
| !! | ATTTGTCAACCAAATTTAAA+CGG | - | chr3_3:8438191-8438210 | Msa0440730:CDS | 20.0% |
| !! | NNNNNNNNACGTTCAGTATA+CGG | + | chr3_3:8438333-8438352 | None:intergenic | 20.0% |
| !!! | ATCAAAGTCGATTAATTTTA+TGG | - | chr3_3:8438574-8438593 | Msa0440730:CDS | 20.0% |
| !! | TCAATTGTATATATGTAGAA+CGG | + | chr3_3:8438930-8438949 | None:intergenic | 20.0% |
| !!! | ACAATTTTGAATTGTTTAGA+TGG | + | chr3_3:8439016-8439035 | None:intergenic | 20.0% |
| !!! | AAACAACCATCTTTTATTTT+TGG | - | chr3_3:8439094-8439113 | Msa0440730:CDS | 20.0% |
| !! | ATGTAACCAAAAATAAAAGA+TGG | + | chr3_3:8439103-8439122 | None:intergenic | 20.0% |
| !! | TTCTCAAATTATAACGTTAT+TGG | + | chr3_3:8439223-8439242 | None:intergenic | 20.0% |
| !! | TTGAGAAAATCACATAATTT+AGG | - | chr3_3:8439236-8439255 | Msa0440730:CDS | 20.0% |
| !! | TGAGAAAATCACATAATTTA+GGG | - | chr3_3:8439237-8439256 | Msa0440730:CDS | 20.0% |
| !! | ATTCGTAATCACAATATAAA+AGG | - | chr3_3:8439351-8439370 | Msa0440730:CDS | 20.0% |
| !! | GAAAAAAAATCAAATAGAAG+TGG | - | chr3_3:8439373-8439392 | Msa0440730:CDS | 20.0% |
| !! | TTTATCTATCTTTAATCAAC+CGG | + | chr3_3:8439407-8439426 | None:intergenic | 20.0% |
| !! | TGATTTATTTAAGAACATGT+TGG | - | chr3_3:8439603-8439622 | Msa0440730:CDS | 20.0% |
| ! | GTAGGAATATATTGATCATT+TGG | + | chr3_3:8436475-8436494 | None:intergenic | 25.0% |
| ! | GAAAAACTCAAAATTCTCAT+TGG | + | chr3_3:8436824-8436843 | None:intergenic | 25.0% |
| ! | GATAACAAAACAATATCACA+AGG | + | chr3_3:8437195-8437214 | None:intergenic | 25.0% |
| ! | AAACCGAATAGGAATATATA+TGG | - | chr3_3:8437351-8437370 | Msa0440730:intron | 25.0% |
| ! | GATAAACTATAACTGACATA+AGG | + | chr3_3:8437761-8437780 | None:intergenic | 25.0% |
| ! | TATGTCAGTTATAGTTTATC+AGG | - | chr3_3:8437761-8437780 | Msa0440730:intron | 25.0% |
| ! | ATAGAAATGTACAAAGCAAT+AGG | + | chr3_3:8437795-8437814 | None:intergenic | 25.0% |
| ! | TATTGCTTTGTACATTTCTA+TGG | - | chr3_3:8437794-8437813 | Msa0440730:intron | 25.0% |
| ! | TACACTTACTGAAAATAAGA+TGG | - | chr3_3:8437962-8437981 | Msa0440730:intron | 25.0% |
| !!! | CTGTTTTAACCGTTTAAATT+TGG | + | chr3_3:8438203-8438222 | None:intergenic | 25.0% |
| ! | AATAGGTGGTTAATTACATT+TGG | - | chr3_3:8438227-8438246 | Msa0440730:CDS | 25.0% |
| !! | TTGATTAGTTGTAACATGAA+AGG | + | chr3_3:8438559-8438578 | None:intergenic | 25.0% |
| !! | TAAGGATTATTTGACTTTGT+TGG | - | chr3_3:8438657-8438676 | Msa0440730:CDS | 25.0% |
| !! | TATTTTGTTGGATATTGGAT+GGG | + | chr3_3:8438971-8438990 | None:intergenic | 25.0% |
| ! | ATCCAATATCCAACAAAATA+CGG | - | chr3_3:8438971-8438990 | Msa0440730:CDS | 25.0% |
| ! | TATCCATACTTCTTAATTAG+CGG | + | chr3_3:8439162-8439181 | None:intergenic | 25.0% |
| !! | ATTTAGGGTAATTATAATCG+TGG | - | chr3_3:8439252-8439271 | Msa0440730:CDS | 25.0% |
| !!! | TTACCTTTAAAATATGTGGT+GGG | + | chr3_3:8439504-8439523 | None:intergenic | 25.0% |
| !!! | TTTACCTTTAAAATATGTGG+TGG | + | chr3_3:8439505-8439524 | None:intergenic | 25.0% |
| !! | GTTGAACTTGACTTTGATTT+TGG | + | chr3_3:8436520-8436539 | None:intergenic | 30.0% |
| TTCGATGTCTATTCATTCAA+TGG | - | chr3_3:8436621-8436640 | Msa0440730:intron | 30.0% | |
| TCGATGTCTATTCATTCAAT+GGG | - | chr3_3:8436622-8436641 | Msa0440730:intron | 30.0% | |
| ATGAGTAGTTTAAACCATTC+AGG | - | chr3_3:8436676-8436695 | Msa0440730:intron | 30.0% | |
| !!! | AAATTCTCATTGGTTTTCTC+AGG | + | chr3_3:8436814-8436833 | None:intergenic | 30.0% |
| AATTCCTTGGAATGAAAGTA+AGG | + | chr3_3:8436879-8436898 | None:intergenic | 30.0% | |
| AACTGTTCAAACAAATTCCT+TGG | + | chr3_3:8436892-8436911 | None:intergenic | 30.0% | |
| !! | GCAACAATTTTGATGAATGA+CGG | - | chr3_3:8437096-8437115 | Msa0440730:intron | 30.0% |
| GTAGTTTCATTGAGAAGAAA+TGG | - | chr3_3:8437118-8437137 | Msa0440730:intron | 30.0% | |
| TTTCATTGAGAAGAAATGGA+AGG | - | chr3_3:8437122-8437141 | Msa0440730:intron | 30.0% | |
| AGAAGAAATGGAAGGATATT+CGG | - | chr3_3:8437130-8437149 | Msa0440730:intron | 30.0% | |
| GTGCAAACTATTAATCTTGA+TGG | - | chr3_3:8437243-8437262 | Msa0440730:intron | 30.0% | |
| TTAATCAAACCAGTATACCT+CGG | + | chr3_3:8437324-8437343 | None:intergenic | 30.0% | |
| ATATGGATTTATGGCGAATA+TGG | - | chr3_3:8437368-8437387 | Msa0440730:intron | 30.0% | |
| TGAGCTTAAGAATACTAGTT+GGG | - | chr3_3:8437446-8437465 | Msa0440730:intron | 30.0% | |
| AAAGCTATGCTTAACAATTC+AGG | - | chr3_3:8437504-8437523 | Msa0440730:intron | 30.0% | |
| ! | TGAATCTGTTGCCTTATTAT+AGG | - | chr3_3:8437661-8437680 | Msa0440730:intron | 30.0% |
| !! | GAAACTTGATTTTTCAAAGC+CGG | - | chr3_3:8437683-8437702 | Msa0440730:intron | 30.0% |
| TACTTATAGTCTTCAACTTC+CGG | + | chr3_3:8437705-8437724 | None:intergenic | 30.0% | |
| GTTGAAGACTATAAGTACTA+TGG | - | chr3_3:8437708-8437727 | Msa0440730:intron | 30.0% | |
| AAGACTATAAGTACTATGGA+TGG | - | chr3_3:8437712-8437731 | Msa0440730:intron | 30.0% | |
| AGACTATAAGTACTATGGAT+GGG | - | chr3_3:8437713-8437732 | Msa0440730:intron | 30.0% | |
| GCAAATTAAGTATGTGTTCT+CGG | - | chr3_3:8437929-8437948 | Msa0440730:intron | 30.0% | |
| AACAATACCAGATGCATTAA+AGG | + | chr3_3:8438146-8438165 | None:intergenic | 30.0% | |
| ACGGTTAAAACAGTTCAAAT+AGG | - | chr3_3:8438210-8438229 | Msa0440730:CDS | 30.0% | |
| GTTAAAACAGTTCAAATAGG+TGG | - | chr3_3:8438213-8438232 | Msa0440730:CDS | 30.0% | |
| CGGTTAATGAGTATATAAGA+TGG | + | chr3_3:8438313-8438332 | None:intergenic | 30.0% | |
| ! | TGGATTATATTTGACTTTGC+TGG | - | chr3_3:8438594-8438613 | Msa0440730:CDS | 30.0% |
| ! | ATTTTGTTGGATATTGGATG+GGG | + | chr3_3:8438970-8438989 | None:intergenic | 30.0% |
| ! | GTATTTTGTTGGATATTGGA+TGG | + | chr3_3:8438972-8438991 | None:intergenic | 30.0% |
| ! | TTGATTTCACCGTATTTTGT+TGG | + | chr3_3:8438983-8439002 | None:intergenic | 30.0% |
| TGATAACATGAGTGTGATTA+TGG | + | chr3_3:8439043-8439062 | None:intergenic | 30.0% | |
| AATAGAAGTGGAAATAGAAC+CGG | - | chr3_3:8439385-8439404 | Msa0440730:CDS | 30.0% | |
| ATAGGGTAGAAAGAAACAAA+TGG | - | chr3_3:8439426-8439445 | Msa0440730:CDS | 30.0% | |
| TTTAGGAATTCCTGTTGATA+TGG | + | chr3_3:8439460-8439479 | None:intergenic | 30.0% | |
| !! | TATCCCACCACATATTTTAA+AGG | - | chr3_3:8439498-8439517 | Msa0440730:CDS | 30.0% |
| ATTTAAGAACATGTTGGATG+TGG | - | chr3_3:8439609-8439628 | Msa0440730:CDS | 30.0% | |
| ! | CACTTTTGTTACAATCTCCA+CGG | - | chr3_3:8436446-8436465 | Msa0440730:CDS | 35.0% |
| TCAGGAAAAACTGGTATTGT+AGG | + | chr3_3:8436493-8436512 | None:intergenic | 35.0% | |
| ! | ACCAACACAGTAACATTTTC+CGG | - | chr3_3:8436538-8436557 | Msa0440730:intron | 35.0% |
| CAAGAGGAACAATTCTGTAA+GGG | - | chr3_3:8436651-8436670 | Msa0440730:intron | 35.0% | |
| !!! | CAGGATTTTTTGATCCTGAA+TGG | + | chr3_3:8436693-8436712 | None:intergenic | 35.0% |
| TCAAAAAATCCTGTGAGGTA+TGG | - | chr3_3:8436700-8436719 | Msa0440730:intron | 35.0% | |
| TCTAAGTTCTCTTTGTGACA+TGG | + | chr3_3:8436758-8436777 | None:intergenic | 35.0% | |
| TAGAGATGAAGATGCAAGAT+TGG | - | chr3_3:8436774-8436793 | Msa0440730:intron | 35.0% | |
| CAATCCTTACTTTCATTCCA+AGG | - | chr3_3:8436872-8436891 | Msa0440730:intron | 35.0% | |
| ATATGTTTCGATTCTACCGT+TGG | - | chr3_3:8436987-8437006 | Msa0440730:intron | 35.0% | |
| ACAAACAGAACAAAAGCCAA+CGG | + | chr3_3:8437006-8437025 | None:intergenic | 35.0% | |
| !! | GCTTTTGTTCTGTTTGTTAC+TGG | - | chr3_3:8437009-8437028 | Msa0440730:intron | 35.0% |
| !! | TGAAAGATGCTTTTGAGGAT+TGG | - | chr3_3:8437034-8437053 | Msa0440730:intron | 35.0% |
| CAGATAAAGTCGAGAATAAC+AGG | - | chr3_3:8437070-8437089 | Msa0440730:intron | 35.0% | |
| GAAGAAATGGAAGGATATTC+GGG | - | chr3_3:8437131-8437150 | Msa0440730:intron | 35.0% | |
| TTATCAACTAGTGATCCAAC+TGG | - | chr3_3:8437210-8437229 | Msa0440730:intron | 35.0% | |
| GTGAGTCTAATTTGAAGACT+AGG | - | chr3_3:8437265-8437284 | Msa0440730:intron | 35.0% | |
| TTAAGTGTGAGAAACCGAAT+AGG | - | chr3_3:8437340-8437359 | Msa0440730:intron | 35.0% | |
| GATGGTAAGAAGTTATCACT+TGG | - | chr3_3:8437396-8437415 | Msa0440730:intron | 35.0% | |
| GTGAGCTTAAGAATACTAGT+TGG | - | chr3_3:8437445-8437464 | Msa0440730:intron | 35.0% | |
| GACTATAAGTACTATGGATG+GGG | - | chr3_3:8437714-8437733 | Msa0440730:intron | 35.0% | |
| ATCGTCTTCGATCATGAAAT+AGG | + | chr3_3:8437841-8437860 | None:intergenic | 35.0% | |
| TCTGCACTGAAACTTTGTAT+TGG | + | chr3_3:8437883-8437902 | None:intergenic | 35.0% | |
| TATGTGTTCTCGGATAAAAC+TGG | - | chr3_3:8437939-8437958 | Msa0440730:intron | 35.0% | |
| GAATGAACTAGGTGAATACT+CGG | - | chr3_3:8438043-8438062 | Msa0440730:CDS | 35.0% | |
| AACATTGCCTTTAATGCATC+TGG | - | chr3_3:8438136-8438155 | Msa0440730:CDS | 35.0% | |
| AGGTGGTTAATTACATTTGG+TGG | - | chr3_3:8438230-8438249 | Msa0440730:CDS | 35.0% | |
| TGTATATATGTAGAACGGCA+GGG | + | chr3_3:8438925-8438944 | None:intergenic | 35.0% | |
| TTGTATATATGTAGAACGGC+AGG | + | chr3_3:8438926-8438945 | None:intergenic | 35.0% | |
| CAATTGATAAACTGCTCTCA+TGG | - | chr3_3:8438943-8438962 | Msa0440730:CDS | 35.0% | |
| ! | TTTTGTTGGATATTGGATGG+GGG | + | chr3_3:8438969-8438988 | None:intergenic | 35.0% |
| ! | CACCGTATTTTGTTGGATAT+TGG | + | chr3_3:8438976-8438995 | None:intergenic | 35.0% |
| GGTAATTATAATCGTGGATG+CGG | - | chr3_3:8439258-8439277 | Msa0440730:CDS | 35.0% | |
| ! | GAGAAGTGTATGTGATTCAT+AGG | - | chr3_3:8439311-8439330 | Msa0440730:CDS | 35.0% |
| TTCCTAAACTCAATTGCTCA+AGG | - | chr3_3:8439472-8439491 | Msa0440730:CDS | 35.0% | |
| TTCCTTGAGCAATTGAGTTT+AGG | + | chr3_3:8439477-8439496 | None:intergenic | 35.0% | |
| ATGTTTCGCAACAACATCAA+AGG | + | chr3_3:8439538-8439557 | None:intergenic | 35.0% | |
| CATTACACATGCCATATCTA+GGG | + | chr3_3:8439564-8439583 | None:intergenic | 35.0% | |
| CTAGATATGGCATGTGTAAT+GGG | - | chr3_3:8439563-8439582 | Msa0440730:CDS | 35.0% | |
| CGTGGAGATTGTAACAAAAG+TGG | + | chr3_3:8436448-8436467 | None:intergenic | 40.0% | |
| !! | TATTGATCATTTGGTGTCCG+TGG | + | chr3_3:8436466-8436485 | None:intergenic | 40.0% |
| ! | TTTGGTAGCTCAGGAAAAAC+TGG | + | chr3_3:8436502-8436521 | None:intergenic | 40.0% |
| !! | GACTTTGATTTTGGTAGCTC+AGG | + | chr3_3:8436511-8436530 | None:intergenic | 40.0% |
| ACCGGAAAATGTTACTGTGT+TGG | + | chr3_3:8436542-8436561 | None:intergenic | 40.0% | |
| !! | ACATTTTCCGGTGTTGAGTT+CGG | - | chr3_3:8436550-8436569 | Msa0440730:intron | 40.0% |
| ! | ATTCAATGGGTTCTAGCAAG+AGG | - | chr3_3:8436635-8436654 | Msa0440730:intron | 40.0% |
| GCAAGAGGAACAATTCTGTA+AGG | - | chr3_3:8436650-8436669 | Msa0440730:intron | 40.0% | |
| CAGGATCAAAAAATCCTGTG+AGG | - | chr3_3:8436695-8436714 | Msa0440730:intron | 40.0% | |
| TAATCAGCTTCCTCAACTTG+CGG | - | chr3_3:8436954-8436973 | Msa0440730:intron | 40.0% | |
| ! | TGGTGTGAAAGATGCTTTTG+AGG | - | chr3_3:8437029-8437048 | Msa0440730:intron | 40.0% |
| !! | AAGATGCTTTTGAGGATTGG+AGG | - | chr3_3:8437037-8437056 | Msa0440730:intron | 40.0% |
| AAATGGAAGGATATTCGGGT+TGG | - | chr3_3:8437135-8437154 | Msa0440730:intron | 40.0% | |
| ATGGCGAATATGGAAATCGA+TGG | - | chr3_3:8437378-8437397 | Msa0440730:intron | 40.0% | |
| TCAACCAACATTGTGCTTAG+AGG | - | chr3_3:8437420-8437439 | Msa0440730:intron | 40.0% | |
| ACATCCTCTAAGCACAATGT+TGG | + | chr3_3:8437427-8437446 | None:intergenic | 40.0% | |
| AAGAATACTAGTTGGGCACT+TGG | - | chr3_3:8437453-8437472 | Msa0440730:intron | 40.0% | |
| !! | TAAGCATAGCTTTAGTCTCG+CGG | + | chr3_3:8437497-8437516 | None:intergenic | 40.0% |
| TAAGTACTATGGATGGGGAT+TGG | - | chr3_3:8437719-8437738 | Msa0440730:intron | 40.0% | |
| AGACGATCGATTGTATGATG+AGG | - | chr3_3:8437854-8437873 | Msa0440730:intron | 40.0% | |
| TTTCAATGTGCAAGCATACG+AGG | - | chr3_3:8437987-8438006 | Msa0440730:intron | 40.0% | |
| GATTACAGTTCCACAAAAGC+TGG | - | chr3_3:8438014-8438033 | Msa0440730:intron | 40.0% | |
| GTATATATGTAGAACGGCAG+GGG | + | chr3_3:8438924-8438943 | None:intergenic | 40.0% | |
| ! | TCTTTTAATGGCCTCTCAGA+TGG | + | chr3_3:8439134-8439153 | None:intergenic | 40.0% |
| ! | TTAGCGGTCCTCTCTTTTAA+TGG | + | chr3_3:8439146-8439165 | None:intergenic | 40.0% |
| GGACCGCTAATTAAGAAGTA+TGG | - | chr3_3:8439156-8439175 | Msa0440730:CDS | 40.0% | |
| ATCCGTGTTGTATCTTGTGT+CGG | + | chr3_3:8439191-8439210 | None:intergenic | 40.0% | |
| GGCTACAATACCATATCAAC+AGG | - | chr3_3:8439447-8439466 | Msa0440730:CDS | 40.0% | |
| CGAAACATAGACCCTAGATA+TGG | - | chr3_3:8439550-8439569 | Msa0440730:CDS | 40.0% | |
| CCATTACACATGCCATATCT+AGG | + | chr3_3:8439565-8439584 | None:intergenic | 40.0% | |
| CCTAGATATGGCATGTGTAA+TGG | - | chr3_3:8439562-8439581 | Msa0440730:CDS | 40.0% | |
| TTGGATGTGGAAATCCTAAC+AGG | - | chr3_3:8439622-8439641 | Msa0440730:CDS | 40.0% | |
| ATCCTAACAGGAAGCAATTC+TGG | - | chr3_3:8439634-8439653 | Msa0440730:CDS | 40.0% | |
| TTCCAGAATTGCTTCCTGTT+AGG | + | chr3_3:8439639-8439658 | None:intergenic | 40.0% | |
| AACTTGACCGAACTCAACAC+CGG | + | chr3_3:8436560-8436579 | None:intergenic | 45.0% | |
| ! | CCTTTTGAACCATACCTCAC+AGG | + | chr3_3:8436712-8436731 | None:intergenic | 45.0% |
| CCTGTGAGGTATGGTTCAAA+AGG | - | chr3_3:8436709-8436728 | Msa0440730:intron | 45.0% | |
| GTGAGGTATGGTTCAAAAGG+TGG | - | chr3_3:8436712-8436731 | Msa0440730:intron | 45.0% | |
| AGGTATGGTTCAAAAGGTGG+TGG | - | chr3_3:8436715-8436734 | Msa0440730:intron | 45.0% | |
| ! | AAAGGTGGTGGTGATTCTGA+AGG | - | chr3_3:8436727-8436746 | Msa0440730:intron | 45.0% |
| ! | AAGGTGGTGGTGATTCTGAA+GGG | - | chr3_3:8436728-8436747 | Msa0440730:intron | 45.0% |
| CTTCCTCAACTTGCGGTATT+TGG | - | chr3_3:8436961-8436980 | Msa0440730:intron | 45.0% | |
| CTTCCAAATACCGCAAGTTG+AGG | + | chr3_3:8436967-8436986 | None:intergenic | 45.0% | |
| TGCACATATGCAACACCAGT+TGG | + | chr3_3:8437228-8437247 | None:intergenic | 45.0% | |
| GAAGACTAGGTATGCGAAAC+AGG | - | chr3_3:8437278-8437297 | Msa0440730:intron | 45.0% | |
| GAAACAGGAGACAGGTTCAA+AGG | - | chr3_3:8437293-8437312 | Msa0440730:intron | 45.0% | |
| AAGGTTCAACCGAGGTATAC+TGG | - | chr3_3:8437312-8437331 | Msa0440730:intron | 45.0% | |
| GAGCTCCATCGAAAAGAAGT+AGG | - | chr3_3:8437526-8437545 | Msa0440730:intron | 45.0% | |
| TCCATCGAAAAGAAGTAGGC+TGG | - | chr3_3:8437530-8437549 | Msa0440730:intron | 45.0% | |
| ! | TCCAGCCTACTTCTTTTCGA+TGG | + | chr3_3:8437534-8437553 | None:intergenic | 45.0% |
| AATCACGTCTGTTTGTGCTG+CGG | - | chr3_3:8437611-8437630 | Msa0440730:intron | 45.0% | |
| ! | GGTTTGGTTGAAGCGTCATA+AGG | - | chr3_3:8437632-8437651 | Msa0440730:intron | 45.0% |
| ! | TCTATGGAGCTTGTTCGTGT+TGG | - | chr3_3:8437810-8437829 | Msa0440730:intron | 45.0% |
| CTTCGATCATGAAATAGGCC+TGG | + | chr3_3:8437836-8437855 | None:intergenic | 45.0% | |
| ! | ATTCTCCATGCCAGCTTTTG+TGG | + | chr3_3:8438027-8438046 | None:intergenic | 45.0% |
| CATTCAAACCACCATCTGAG+AGG | - | chr3_3:8439120-8439139 | Msa0440730:CDS | 45.0% | |
| TTTAATGGCCTCTCAGATGG+TGG | + | chr3_3:8439131-8439150 | None:intergenic | 45.0% | |
| CTGAGAGGCCATTAAAAGAG+AGG | - | chr3_3:8439135-8439154 | Msa0440730:CDS | 45.0% | |
| CACCGACACAAGATACAACA+CGG | - | chr3_3:8439186-8439205 | Msa0440730:CDS | 45.0% | |
| !! | AAAAAAATAATGTTAAATAT+TGG | - | chr3_3:8438460-8438479 | Msa0440730:CDS | 5.0% |
| !! | TAATAATAATTAAAAAAAAC+CGG | + | chr3_3:8438750-8438769 | None:intergenic | 5.0% |
| !! | TAATAATAATTAAAAAAAAC+CGG | + | chr3_3:8438750-8438769 | None:intergenic | 5.0% |
| AGGTATGCGAAACAGGAGAC+AGG | - | chr3_3:8437285-8437304 | Msa0440730:intron | 50.0% | |
| CAGGTTCAAAGGTTCAACCG+AGG | - | chr3_3:8437304-8437323 | Msa0440730:intron | 50.0% | |
| !! | CTTGGTGTCGCAGTCTATTG+TGG | - | chr3_3:8437471-8437490 | Msa0440730:intron | 50.0% |
| AAAGAAGTAGGCTGGAGACG+CGG | - | chr3_3:8437538-8437557 | Msa0440730:intron | 50.0% | |
| CAGTTCCACAAAAGCTGGCA+TGG | - | chr3_3:8438019-8438038 | Msa0440730:intron | 50.0% | |
| GCTGGCATGGAGAATGAACT+AGG | - | chr3_3:8438032-8438051 | Msa0440730:intron | 50.0% | |
| !! | CTAGGTGAATACTCGGTGCA+AGG | - | chr3_3:8438050-8438069 | Msa0440730:CDS | 50.0% |
| ATATGTAGAACGGCAGGGGA+AGG | + | chr3_3:8438920-8438939 | None:intergenic | 50.0% | |
| CGTCTGTTTGTGCTGCGGTT+TGG | - | chr3_3:8437616-8437635 | Msa0440730:intron | 55.0% | |
| ! | GGAGCTTGTTCGTGTTGGCC+AGG | - | chr3_3:8437815-8437834 | Msa0440730:intron | 60.0% |
| GGGAAGGAGCTTAACGGCAG+AGG | + | chr3_3:8438904-8438923 | None:intergenic | 60.0% | |
| CGGCAGGGGAAGGAGCTTAA+CGG | + | chr3_3:8438910-8438929 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 8436430 | 8439684 | 8436430 | ID=Msa0440730;Name=Msa0440730 |
| chr3_3 | mRNA | 8436430 | 8439684 | 8436430 | ID=Msa0440730-mRNA-1;Parent=Msa0440730;Name=Msa0440730-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|0|0|0.5|1|1|2|0|588 |
| chr3_3 | exon | 8438043 | 8439684 | 8438043 | ID=Msa0440730-mRNA-1:exon:1775;Parent=Msa0440730-mRNA-1 |
| chr3_3 | exon | 8436430 | 8436554 | 8436430 | ID=Msa0440730-mRNA-1:exon:1774;Parent=Msa0440730-mRNA-1 |
| chr3_3 | CDS | 8438043 | 8439684 | 8438043 | ID=Msa0440730-mRNA-1:cds;Parent=Msa0440730-mRNA-1 |
| chr3_3 | CDS | 8436430 | 8436554 | 8436430 | ID=Msa0440730-mRNA-1:cds;Parent=Msa0440730-mRNA-1 |
| Gene Sequence |
| Protein sequence |
