Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1030240 | PNX93132.1 | 63.095 | 252 | 83 | 8 | 19 | 267 | 1 | 245 | 2.11e-94 | 302 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1030240 | sp|F4HQ23|LRL27_ARATH | 32.549 | 255 | 138 | 15 | 25 | 260 | 238 | 477 | 6.82e-18 | 87.0 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1030240 | A0A2K3MQV3 | 63.095 | 252 | 83 | 8 | 19 | 267 | 1 | 245 | 1.01e-94 | 302 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0043740 | Msa1030240 | 0.830756 | 2.454574e-55 | -8.615850e-47 |
| Msa0090090 | Msa1030240 | 0.833416 | 5.402259e-56 | -8.615850e-47 |
| Msa0095940 | Msa1030240 | 0.805319 | 1.413472e-49 | -8.615850e-47 |
| Msa0107830 | Msa1030240 | 0.806942 | 6.438679e-50 | -8.615850e-47 |
| Msa0615210 | Msa1030240 | 0.806034 | 1.000737e-49 | -8.615850e-47 |
| Msa0662460 | Msa1030240 | 0.867964 | 9.279818e-66 | -8.615850e-47 |
| Msa0693750 | Msa1030240 | 0.808641 | 2.803486e-50 | -8.615850e-47 |
| Msa0704560 | Msa1030240 | 0.836679 | 8.125566e-57 | -8.615850e-47 |
| Msa0709140 | Msa1030240 | 0.828475 | 8.804619e-55 | -8.615850e-47 |
| Msa0717860 | Msa1030240 | 0.806761 | 7.030379e-50 | -8.615850e-47 |
| Msa0719860 | Msa1030240 | 0.814067 | 1.860205e-51 | -8.615850e-47 |
| Msa0723770 | Msa1030240 | 0.808437 | 3.098183e-50 | -8.615850e-47 |
| Msa0740630 | Msa1030240 | 0.800147 | 1.651703e-48 | -8.615850e-47 |
| Msa0753930 | Msa1030240 | 0.817213 | 3.705992e-52 | -8.615850e-47 |
| Msa0758520 | Msa1030240 | 0.845887 | 3.067705e-59 | -8.615850e-47 |
| Msa0758570 | Msa1030240 | 0.837524 | 4.940747e-57 | -8.615850e-47 |
| Msa0765140 | Msa1030240 | 0.820856 | 5.498032e-53 | -8.615850e-47 |
| Msa0766170 | Msa1030240 | 0.811442 | 6.988268e-51 | -8.615850e-47 |
| Msa0790920 | Msa1030240 | 0.801830 | 7.483251e-49 | -8.615850e-47 |
| Msa0804870 | Msa1030240 | 0.824707 | 6.976873e-54 | -8.615850e-47 |
| Msa0807020 | Msa1030240 | 0.801814 | 7.540610e-49 | -8.615850e-47 |
| Msa0820880 | Msa1030240 | 0.803453 | 3.461324e-49 | -8.615850e-47 |
| Msa0829990 | Msa1030240 | 0.809508 | 1.827727e-50 | -8.615850e-47 |
| Msa0832950 | Msa1030240 | 0.827671 | 1.375081e-54 | -8.615850e-47 |
| Msa0838870 | Msa1030240 | 0.857832 | 1.247291e-62 | -8.615850e-47 |
| Msa0840780 | Msa1030240 | 0.816824 | 4.531877e-52 | -8.615850e-47 |
| Msa0137560 | Msa1030240 | 0.834288 | 3.268408e-56 | -8.615850e-47 |
| Msa0139680 | Msa1030240 | 0.833188 | 6.155109e-56 | -8.615850e-47 |
| Msa0150620 | Msa1030240 | 0.844566 | 6.984836e-59 | -8.615850e-47 |
| Msa0161560 | Msa1030240 | 0.827631 | 1.406121e-54 | -8.615850e-47 |
| Msa0162680 | Msa1030240 | 0.818176 | 2.247227e-52 | -8.615850e-47 |
| Msa0164250 | Msa1030240 | 0.810398 | 1.175862e-50 | -8.615850e-47 |
| Msa0182560 | Msa1030240 | 0.805714 | 1.168252e-49 | -8.615850e-47 |
| Msa0185100 | Msa1030240 | 0.823152 | 1.615290e-53 | -8.615850e-47 |
| Msa0186240 | Msa1030240 | 0.833196 | 6.128725e-56 | -8.615850e-47 |
| Msa0193190 | Msa1030240 | 0.843591 | 1.275673e-58 | -8.615850e-47 |
| Msa0204170 | Msa1030240 | 0.803343 | 3.647629e-49 | -8.615850e-47 |
| Msa0218090 | Msa1030240 | 0.829787 | 4.232800e-55 | -8.615850e-47 |
| Msa0234740 | Msa1030240 | 0.804395 | 2.205507e-49 | -8.615850e-47 |
| Msa0367860 | Msa1030240 | 0.835213 | 1.913068e-56 | -8.615850e-47 |
| Msa0383900 | Msa1030240 | 0.850143 | 2.054904e-60 | -8.615850e-47 |
| Msa0390200 | Msa1030240 | 0.808551 | 2.929529e-50 | -8.615850e-47 |
| Msa0393100 | Msa1030240 | 0.844493 | 7.305561e-59 | -8.615850e-47 |
| Msa0402800 | Msa1030240 | 0.801434 | 9.019936e-49 | -8.615850e-47 |
| Msa0405210 | Msa1030240 | 0.803457 | 3.454841e-49 | -8.615850e-47 |
| Msa0415640 | Msa1030240 | 0.806623 | 7.518125e-50 | -8.615850e-47 |
| Msa0434300 | Msa1030240 | 0.833911 | 4.061982e-56 | -8.615850e-47 |
| Msa0434400 | Msa1030240 | 0.855480 | 6.131776e-62 | -8.615850e-47 |
| Msa0440730 | Msa1030240 | 0.804456 | 2.141657e-49 | -8.615850e-47 |
| Msa0441260 | Msa1030240 | 0.803615 | 3.203385e-49 | -8.615850e-47 |
| Msa0449490 | Msa1030240 | 0.822383 | 2.439247e-53 | -8.615850e-47 |
| Msa0460600 | Msa1030240 | 0.835793 | 1.364672e-56 | -8.615850e-47 |
| Msa0478080 | Msa1030240 | 0.820578 | 6.371385e-53 | -8.615850e-47 |
| Msa1016100 | Msa1030240 | 0.833195 | 6.132404e-56 | -8.615850e-47 |
| Msa1027910 | Msa1030240 | 0.817781 | 2.759155e-52 | -8.615850e-47 |
| Msa1030200 | Msa1030240 | 0.892944 | 9.942389e-75 | -8.615850e-47 |
| Msa1030210 | Msa1030240 | 0.863434 | 2.496641e-64 | -8.615850e-47 |
| Msa1030240 | Msa1035050 | 0.818502 | 1.896081e-52 | -8.615850e-47 |
| Msa1030240 | Msa1069250 | 0.850219 | 1.955474e-60 | -8.615850e-47 |
| Msa1030240 | Msa1075090 | 0.824184 | 9.258749e-54 | -8.615850e-47 |
| Msa1030240 | Msa1077970 | 0.821406 | 4.106066e-53 | -8.615850e-47 |
| Msa1030240 | Msa1084890 | 0.839542 | 1.488776e-57 | -8.615850e-47 |
| Msa1030240 | Msa1095590 | 0.826709 | 2.337667e-54 | -8.615850e-47 |
| Msa1030240 | Msa1102210 | 0.817438 | 3.298141e-52 | -8.615850e-47 |
| Msa1030240 | Msa1114670 | 0.819076 | 1.404078e-52 | -8.615850e-47 |
| Msa1030240 | Msa1120580 | 0.858726 | 6.758276e-63 | -8.615850e-47 |
| Msa1030240 | Msa1131120 | 0.804387 | 2.214006e-49 | -8.615850e-47 |
| Msa1030240 | Msa1132980 | 0.819096 | 1.389650e-52 | -8.615850e-47 |
| Msa1030240 | Msa1136760 | 0.843726 | 1.173639e-58 | -8.615850e-47 |
| Msa1030240 | Msa1157110 | 0.855073 | 8.055754e-62 | -8.615850e-47 |
| Msa1030240 | Msa1174280 | 0.807774 | 4.289072e-50 | -8.615850e-47 |
| Msa1030240 | Msa1185270 | 0.801494 | 8.767663e-49 | -8.615850e-47 |
| Msa1030240 | Msa1202110 | 0.802528 | 5.375077e-49 | -8.615850e-47 |
| Msa1030240 | Msa1203810 | 0.822241 | 2.631595e-53 | -8.615850e-47 |
| Msa1030240 | Msa1211610 | 0.809042 | 2.301062e-50 | -8.615850e-47 |
| Msa1030240 | Msa1221220 | 0.806555 | 7.772583e-50 | -8.615850e-47 |
| Msa1030240 | Msa1254870 | 0.803722 | 3.044174e-49 | -8.615850e-47 |
| Msa1030240 | Msa1256060 | 0.800808 | 1.211440e-48 | -8.615850e-47 |
| Msa1030240 | Msa1279060 | 0.827553 | 1.468018e-54 | -8.615850e-47 |
| Msa1030240 | Msa1296240 | 0.812748 | 3.626869e-51 | -8.615850e-47 |
| Msa1030240 | Msa1299480 | 0.805331 | 1.405874e-49 | -8.615850e-47 |
| Msa1030240 | Msa1307530 | 0.831696 | 1.442091e-55 | -8.615850e-47 |
| Msa1030240 | Msa1328430 | 0.805076 | 1.589384e-49 | -8.615850e-47 |
| Msa1030240 | Msa1356130 | 0.805294 | 1.431268e-49 | -8.615850e-47 |
| Msa1030240 | Msa1357570 | 0.821011 | 5.063634e-53 | -8.615850e-47 |
| Msa1030240 | Msa1398140 | 0.853558 | 2.206861e-61 | -8.615850e-47 |
| Msa1030240 | Msa1404050 | 0.807473 | 4.968471e-50 | -8.615850e-47 |
| Msa1030240 | Msa1413800 | 0.837710 | 4.427803e-57 | -8.615850e-47 |
| Msa1030240 | Msa1427000 | 0.828685 | 7.837992e-55 | -8.615850e-47 |
| Msa1030240 | Msa1435320 | 0.821584 | 3.735561e-53 | -8.615850e-47 |
| Msa1030240 | Msa1436090 | 0.832684 | 8.213587e-56 | -8.615850e-47 |
| Msa1030240 | Msa1439780 | 0.836325 | 9.995648e-57 | -8.615850e-47 |
| Msa1030240 | Msa1443400 | 0.818393 | 2.006611e-52 | -8.615850e-47 |
| Msa1030240 | Msa1447880 | 0.805013 | 1.638568e-49 | -8.615850e-47 |
| Msa1030240 | Msa1448040 | 0.818016 | 2.442232e-52 | -8.615850e-47 |
| Msa1030240 | Msa1451990 | 0.803762 | 2.985957e-49 | -8.615850e-47 |
| Msa1030240 | Msa1455200 | 0.836465 | 9.208267e-57 | -8.615850e-47 |
| Msa0253960 | Msa1030240 | 0.840223 | 9.896234e-58 | -8.615850e-47 |
| Msa0273070 | Msa1030240 | 0.839652 | 1.394199e-57 | -8.615850e-47 |
| Msa0275730 | Msa1030240 | 0.812658 | 3.794993e-51 | -8.615850e-47 |
| Msa0296910 | Msa1030240 | 0.804192 | 2.430389e-49 | -8.615850e-47 |
| Msa0306310 | Msa1030240 | 0.818380 | 2.020044e-52 | -8.615850e-47 |
| Msa0319680 | Msa1030240 | 0.827708 | 1.347476e-54 | -8.615850e-47 |
| Msa0335070 | Msa1030240 | 0.811558 | 6.592470e-51 | -8.615850e-47 |
| Msa0335080 | Msa1030240 | 0.824431 | 8.101991e-54 | -8.615850e-47 |
| Msa0345050 | Msa1030240 | 0.813241 | 2.828273e-51 | -8.615850e-47 |
| Msa0345890 | Msa1030240 | 0.837066 | 6.472645e-57 | -8.615850e-47 |
| Msa0345980 | Msa1030240 | 0.838422 | 2.903717e-57 | -8.615850e-47 |
| Msa0488580 | Msa1030240 | 0.853485 | 2.317110e-61 | -8.615850e-47 |
| Msa0497690 | Msa1030240 | 0.811782 | 5.894455e-51 | -8.615850e-47 |
| Msa0497860 | Msa1030240 | 0.810260 | 1.259383e-50 | -8.615850e-47 |
| Msa0510870 | Msa1030240 | 0.806623 | 7.520016e-50 | -8.615850e-47 |
| Msa0522140 | Msa1030240 | 0.823271 | 1.515065e-53 | -8.615850e-47 |
| Msa0522170 | Msa1030240 | 0.837077 | 6.430893e-57 | -8.615850e-47 |
| Msa0534270 | Msa1030240 | 0.803229 | 3.851531e-49 | -8.615850e-47 |
| Msa0534610 | Msa1030240 | 0.804176 | 2.449114e-49 | -8.615850e-47 |
| Msa0556270 | Msa1030240 | 0.812958 | 3.261950e-51 | -8.615850e-47 |
| Msa0590810 | Msa1030240 | 0.802420 | 5.658634e-49 | -8.615850e-47 |
| Msa0592660 | Msa1030240 | 0.852097 | 5.773445e-61 | -8.615850e-47 |
| Msa0843950 | Msa1030240 | 0.808811 | 2.578397e-50 | -8.615850e-47 |
| Msa0845670 | Msa1030240 | 0.807042 | 6.131812e-50 | -8.615850e-47 |
| Msa0859040 | Msa1030240 | 0.814722 | 1.333217e-51 | -8.615850e-47 |
| Msa0867610 | Msa1030240 | 0.831489 | 1.621802e-55 | -8.615850e-47 |
| Msa0921790 | Msa1030240 | 0.802601 | 5.192108e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1030240 | MtrunA17_Chr1g0212811 | 54.511 | 266 | 107 | 8 | 10 | 267 | 1 | 260 | 4.22e-91 | 271 |
| Msa1030240 | MtrunA17_Chr7g0251121 | 53.069 | 277 | 107 | 12 | 1 | 269 | 1 | 262 | 3.99e-81 | 258 |
| Msa1030240 | MtrunA17_Chr7g0251061 | 55.515 | 272 | 101 | 12 | 1 | 262 | 1 | 262 | 1.90e-80 | 256 |
| Msa1030240 | MtrunA17_Chr7g0251071 | 50.355 | 282 | 115 | 11 | 1 | 267 | 1 | 272 | 2.41e-76 | 245 |
| Msa1030240 | MtrunA17_Chr7g0251101 | 51.773 | 282 | 109 | 13 | 1 | 270 | 1 | 267 | 3.20e-74 | 239 |
| Msa1030240 | MtrunA17_Chr7g0251051 | 50.758 | 264 | 87 | 9 | 1 | 260 | 1 | 225 | 9.65e-66 | 216 |
| Msa1030240 | MtrunA17_Chr7g0251091 | 53.595 | 153 | 59 | 9 | 29 | 176 | 1 | 146 | 3.85e-43 | 144 |
| Msa1030240 | MtrunA17_Chr6g0483851 | 31.022 | 274 | 162 | 12 | 3 | 260 | 7 | 269 | 5.73e-23 | 98.6 |
| Msa1030240 | MtrunA17_Chr8g0376061 | 29.918 | 244 | 150 | 10 | 27 | 261 | 18 | 249 | 1.98e-22 | 97.1 |
| Msa1030240 | MtrunA17_Chr6g0483791 | 29.455 | 275 | 168 | 11 | 1 | 260 | 1 | 264 | 5.82e-21 | 92.8 |
| Msa1030240 | MtrunA17_Chr7g0251011 | 28.517 | 263 | 168 | 11 | 10 | 269 | 11 | 256 | 9.15e-21 | 89.4 |
| Msa1030240 | MtrunA17_Chr7g0251131 | 29.388 | 245 | 153 | 11 | 10 | 251 | 8 | 235 | 1.25e-20 | 89.0 |
| Msa1030240 | MtrunA17_Chr8g0391231 | 24.176 | 273 | 174 | 11 | 15 | 271 | 9 | 264 | 2.41e-20 | 90.9 |
| Msa1030240 | MtrunA17_Chr6g0483921 | 30.279 | 251 | 149 | 11 | 25 | 260 | 26 | 265 | 3.25e-19 | 86.3 |
| Msa1030240 | MtrunA17_Chr6g0483901 | 28.276 | 145 | 91 | 6 | 12 | 151 | 13 | 149 | 8.12e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1030240 | AT1G66930.2 | 32.549 | 255 | 138 | 15 | 25 | 260 | 238 | 477 | 6.93e-19 | 87.0 |
| Msa1030240 | AT5G38260.1 | 28.244 | 262 | 159 | 14 | 13 | 260 | 12 | 258 | 2.32e-18 | 85.5 |
| Msa1030240 | AT1G67000.1 | 31.513 | 238 | 133 | 14 | 33 | 254 | 248 | 471 | 2.78e-15 | 76.3 |
| Msa1030240 | AT1G18390.1 | 27.347 | 245 | 152 | 11 | 24 | 260 | 17 | 243 | 3.02e-15 | 76.3 |
| Msa1030240 | AT5G38210.2 | 24.521 | 261 | 174 | 12 | 17 | 267 | 17 | 264 | 2.33e-14 | 73.6 |
| Msa1030240 | AT5G38210.3 | 24.710 | 259 | 172 | 12 | 19 | 267 | 1 | 246 | 2.44e-14 | 73.6 |
| Msa1030240 | AT1G66940.2 | 26.506 | 249 | 141 | 12 | 39 | 262 | 33 | 264 | 1.73e-12 | 67.0 |
| Msa1030240 | AT1G66940.3 | 26.506 | 249 | 141 | 12 | 39 | 262 | 33 | 264 | 1.73e-12 | 67.0 |
| Msa1030240 | AT1G66940.4 | 25.413 | 303 | 177 | 14 | 10 | 281 | 2 | 286 | 2.31e-12 | 67.0 |
| Msa1030240 | AT1G66940.1 | 25.267 | 281 | 164 | 13 | 10 | 262 | 2 | 264 | 2.44e-12 | 66.6 |
| Msa1030240 | AT1G66880.1 | 27.511 | 229 | 142 | 8 | 36 | 250 | 628 | 846 | 3.77e-12 | 67.0 |
| Msa1030240 | AT1G66880.2 | 27.511 | 229 | 142 | 8 | 36 | 250 | 249 | 467 | 9.46e-12 | 65.9 |
| Msa1030240 | AT1G67025.1 | 26.087 | 207 | 137 | 9 | 48 | 251 | 14 | 207 | 1.66e-11 | 63.2 |
| Msa1030240 | AT5G38210.1 | 25.097 | 259 | 173 | 11 | 14 | 270 | 14 | 253 | 8.10e-11 | 62.8 |
| Msa1030240 | AT5G38250.1 | 26.407 | 231 | 142 | 10 | 43 | 272 | 41 | 244 | 8.39e-11 | 62.8 |
Find 54 sgRNAs with CRISPR-Local
Find 118 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACTGTTGTGATTCCAATTT+CGG | 0.182111 | 7_1:-64207025 | Msa1030240:CDS |
| GCAGCTTGGGCTCCCGAAAT+TGG | 0.249363 | 7_1:+64207012 | None:intergenic |
| ACTGTTGTGATTCCAATTTC+GGG | 0.256425 | 7_1:-64207024 | Msa1030240:CDS |
| TTAACTACCGTATTCAAAAC+TGG | 0.313743 | 7_1:-64207326 | Msa1030240:CDS |
| AACACTCAATTTCAACAATA+TGG | 0.316970 | 7_1:-64207207 | Msa1030240:CDS |
| CAAACCTCAAGTATCCATTC+TGG | 0.325596 | 7_1:-64207446 | Msa1030240:CDS |
| TACGGTTGCAGTGTTGCAAC+TGG | 0.347326 | 7_1:-64207159 | Msa1030240:CDS |
| CAAGCTGCACAACTTGGTTC+TGG | 0.352244 | 7_1:-64206997 | Msa1030240:CDS |
| GTTATCGAATGTGCTGTTCT+TGG | 0.353185 | 7_1:+64207227 | None:intergenic |
| CAGAATGGATACTTGAGGTT+TGG | 0.358922 | 7_1:+64207447 | None:intergenic |
| CGGAAGCTATGGGGAATGTA+AGG | 0.359780 | 7_1:-64206923 | Msa1030240:CDS |
| GCACAACTTGGTTCTGGAAA+TGG | 0.366860 | 7_1:-64206991 | Msa1030240:CDS |
| GCTAACGTGACACTGTTATA+CGG | 0.371420 | 7_1:-64207177 | Msa1030240:CDS |
| AGAATGGATACTTGAGGTTT+GGG | 0.372750 | 7_1:+64207448 | None:intergenic |
| TGTAAGGGATGCGTTGATTC+TGG | 0.377259 | 7_1:-64206907 | Msa1030240:CDS |
| TTGTGTAGTGTTTATCATCT+TGG | 0.382659 | 7_1:+64207502 | None:intergenic |
| AGAACCAAGTTGTGCAGCTT+GGG | 0.394781 | 7_1:+64206999 | None:intergenic |
| TTAATGCTACGAAACAGATT+TGG | 0.405631 | 7_1:+64207129 | None:intergenic |
| TCGCATGTGAGCTTCGTATT+AGG | 0.412929 | 7_1:+64207384 | None:intergenic |
| CAGAACCAAGTTGTGCAGCT+TGG | 0.417932 | 7_1:+64206998 | None:intergenic |
| ACGGTAGTTAACATCATTGA+TGG | 0.429446 | 7_1:+64207338 | None:intergenic |
| GTCAACGATTTGTTAAAAGA+TGG | 0.444675 | 7_1:-64206964 | Msa1030240:CDS |
| TCATCTTGGCATAGACAAGT+TGG | 0.449427 | 7_1:+64207516 | None:intergenic |
| TTGAAATGGAACGGAAGCTA+TGG | 0.451233 | 7_1:-64206934 | Msa1030240:CDS |
| TGGTGATGTTTGTGCTTTGA+CGG | 0.466470 | 7_1:-64207256 | Msa1030240:CDS |
| AAACCTCAAGTATCCATTCT+GGG | 0.473803 | 7_1:-64207445 | Msa1030240:CDS |
| TCTCTGTTATCTCCCCAGAA+TGG | 0.503519 | 7_1:+64207432 | None:intergenic |
| GGTGGAGCGTGTGGGAATGA+TGG | 0.515510 | 7_1:-64206886 | Msa1030240:CDS |
| TGAAATGGAACGGAAGCTAT+GGG | 0.529944 | 7_1:-64206933 | Msa1030240:CDS |
| AAAGAAGATGAATGAGGCAG+AGG | 0.534779 | 7_1:+64207585 | None:intergenic |
| GGAGCCCAAGCTGCACAACT+TGG | 0.539682 | 7_1:-64207003 | Msa1030240:CDS |
| GATAACAGAGAAGAATATTG+TGG | 0.549348 | 7_1:-64207420 | Msa1030240:CDS |
| AGTAAGAGTCGGAGTACAGA+AGG | 0.555034 | 7_1:+64207044 | None:intergenic |
| GTTGACATACTTGAGGCCAT+TGG | 0.555142 | 7_1:+64206805 | None:intergenic |
| ATTAGAGACGATTACTCAAG+TGG | 0.564263 | 7_1:-64207276 | Msa1030240:CDS |
| AACTTCATGCACTTCACCAA+TGG | 0.565920 | 7_1:-64206821 | Msa1030240:CDS |
| AAGTGAAAAGAAGATGAATG+AGG | 0.569013 | 7_1:+64207579 | None:intergenic |
| GAAGATCATTAAAAGTGTGA+AGG | 0.574897 | 7_1:+64207551 | None:intergenic |
| CTCCCCAGAATGGATACTTG+AGG | 0.575326 | 7_1:+64207442 | None:intergenic |
| CGTAGCATTAACTGTGACAG+AGG | 0.576331 | 7_1:-64207117 | Msa1030240:CDS |
| ACGAAGCTCACATGCGACGA+CGG | 0.578474 | 7_1:-64207378 | Msa1030240:CDS |
| TAACTACCGTATTCAAAACT+GGG | 0.582177 | 7_1:-64207325 | Msa1030240:CDS |
| GTTGATTCTGGTGGAGCGTG+TGG | 0.585040 | 7_1:-64206895 | Msa1030240:CDS |
| GGAGCGTGTGGGAATGATGG+AGG | 0.600619 | 7_1:-64206883 | Msa1030240:CDS |
| ACGGTTGCAGTGTTGCAACT+GGG | 0.602977 | 7_1:-64207158 | Msa1030240:CDS |
| TTGATTCTGGTGGAGCGTGT+GGG | 0.618100 | 7_1:-64206894 | Msa1030240:CDS |
| GGAATCACAACAGTAAGAGT+CGG | 0.631334 | 7_1:+64207033 | None:intergenic |
| TGATATTGTTGACATACTTG+AGG | 0.634756 | 7_1:+64206798 | None:intergenic |
| GGAAGCTATGGGGAATGTAA+GGG | 0.636563 | 7_1:-64206922 | Msa1030240:CDS |
| AACCTCAAGTATCCATTCTG+GGG | 0.648764 | 7_1:-64207444 | Msa1030240:CDS |
| TTCCGCAGCTAAAACTGCTG+TGG | 0.651321 | 7_1:+64207475 | None:intergenic |
| AACAGAGAAGAATATTGTGG+TGG | 0.656423 | 7_1:-64207417 | Msa1030240:CDS |
| AAGGGATGCGTTGATTCTGG+TGG | 0.660937 | 7_1:-64206904 | Msa1030240:CDS |
| GAAATGGAACGGAAGCTATG+GGG | 0.681473 | 7_1:-64206932 | Msa1030240:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | AACACTCAATTTCAACAATA+TGG | - | chr7_1:64207134-64207153 | Msa1030240:CDS | 25.0% |
| !!! | AAGATGGTTTTGATTTGAAA+TGG | - | chr7_1:64207393-64207412 | Msa1030240:CDS | 25.0% |
| !! | TTTAGATGTTTCTGCAAAAA+TGG | - | chr7_1:64207488-64207507 | Msa1030240:CDS | 25.0% |
| ! | AACACTCAATTTCAACAATA+TGG | - | chr7_1:64207134-64207153 | Msa1030240:CDS | 25.0% |
| !!! | AAGATGGTTTTGATTTGAAA+TGG | - | chr7_1:64207393-64207412 | Msa1030240:CDS | 25.0% |
| !! | TTTAGATGTTTCTGCAAAAA+TGG | - | chr7_1:64207488-64207507 | Msa1030240:CDS | 25.0% |
| AAGTGAAAAGAAGATGAATG+AGG | + | chr7_1:64206765-64206784 | None:intergenic | 30.0% | |
| ! | GAAGATCATTAAAAGTGTGA+AGG | + | chr7_1:64206793-64206812 | None:intergenic | 30.0% |
| TTGTGTAGTGTTTATCATCT+TGG | + | chr7_1:64206842-64206861 | None:intergenic | 30.0% | |
| GATAACAGAGAAGAATATTG+TGG | - | chr7_1:64206921-64206940 | Msa1030240:CDS | 30.0% | |
| TTAACTACCGTATTCAAAAC+TGG | - | chr7_1:64207015-64207034 | Msa1030240:CDS | 30.0% | |
| TAACTACCGTATTCAAAACT+GGG | - | chr7_1:64207016-64207035 | Msa1030240:CDS | 30.0% | |
| TTAATGCTACGAAACAGATT+TGG | + | chr7_1:64207215-64207234 | None:intergenic | 30.0% | |
| TACTGTTGTGATTCCAATTT+CGG | - | chr7_1:64207316-64207335 | Msa1030240:CDS | 30.0% | |
| !! | GTCAACGATTTGTTAAAAGA+TGG | - | chr7_1:64207377-64207396 | Msa1030240:CDS | 30.0% |
| !!! | GGTTTTGATTTGAAATGGAA+CGG | - | chr7_1:64207398-64207417 | Msa1030240:CDS | 30.0% |
| TGATATTGTTGACATACTTG+AGG | + | chr7_1:64207546-64207565 | None:intergenic | 30.0% | |
| AAGTGAAAAGAAGATGAATG+AGG | + | chr7_1:64206765-64206784 | None:intergenic | 30.0% | |
| ! | GAAGATCATTAAAAGTGTGA+AGG | + | chr7_1:64206793-64206812 | None:intergenic | 30.0% |
| TTGTGTAGTGTTTATCATCT+TGG | + | chr7_1:64206842-64206861 | None:intergenic | 30.0% | |
| GATAACAGAGAAGAATATTG+TGG | - | chr7_1:64206921-64206940 | Msa1030240:CDS | 30.0% | |
| TTAACTACCGTATTCAAAAC+TGG | - | chr7_1:64207015-64207034 | Msa1030240:CDS | 30.0% | |
| TAACTACCGTATTCAAAACT+GGG | - | chr7_1:64207016-64207035 | Msa1030240:CDS | 30.0% | |
| TTAATGCTACGAAACAGATT+TGG | + | chr7_1:64207215-64207234 | None:intergenic | 30.0% | |
| TACTGTTGTGATTCCAATTT+CGG | - | chr7_1:64207316-64207335 | Msa1030240:CDS | 30.0% | |
| !! | GTCAACGATTTGTTAAAAGA+TGG | - | chr7_1:64207377-64207396 | Msa1030240:CDS | 30.0% |
| !!! | GGTTTTGATTTGAAATGGAA+CGG | - | chr7_1:64207398-64207417 | Msa1030240:CDS | 30.0% |
| TGATATTGTTGACATACTTG+AGG | + | chr7_1:64207546-64207565 | None:intergenic | 30.0% | |
| AGAATGGATACTTGAGGTTT+GGG | + | chr7_1:64206896-64206915 | None:intergenic | 35.0% | |
| AAACCTCAAGTATCCATTCT+GGG | - | chr7_1:64206896-64206915 | Msa1030240:CDS | 35.0% | |
| AACAGAGAAGAATATTGTGG+TGG | - | chr7_1:64206924-64206943 | Msa1030240:CDS | 35.0% | |
| ACGGTAGTTAACATCATTGA+TGG | + | chr7_1:64207006-64207025 | None:intergenic | 35.0% | |
| !!! | TATCGTCCCAGTTTTGAATA+CGG | + | chr7_1:64207025-64207044 | None:intergenic | 35.0% |
| ATTAGAGACGATTACTCAAG+TGG | - | chr7_1:64207065-64207084 | Msa1030240:CDS | 35.0% | |
| ACTGTTGTGATTCCAATTTC+GGG | - | chr7_1:64207317-64207336 | Msa1030240:CDS | 35.0% | |
| AGAATGGATACTTGAGGTTT+GGG | + | chr7_1:64206896-64206915 | None:intergenic | 35.0% | |
| AAACCTCAAGTATCCATTCT+GGG | - | chr7_1:64206896-64206915 | Msa1030240:CDS | 35.0% | |
| AACAGAGAAGAATATTGTGG+TGG | - | chr7_1:64206924-64206943 | Msa1030240:CDS | 35.0% | |
| ACGGTAGTTAACATCATTGA+TGG | + | chr7_1:64207006-64207025 | None:intergenic | 35.0% | |
| !!! | TATCGTCCCAGTTTTGAATA+CGG | + | chr7_1:64207025-64207044 | None:intergenic | 35.0% |
| ATTAGAGACGATTACTCAAG+TGG | - | chr7_1:64207065-64207084 | Msa1030240:CDS | 35.0% | |
| ACTGTTGTGATTCCAATTTC+GGG | - | chr7_1:64207317-64207336 | Msa1030240:CDS | 35.0% | |
| AAAGAAGATGAATGAGGCAG+AGG | + | chr7_1:64206759-64206778 | None:intergenic | 40.0% | |
| TCATCTTGGCATAGACAAGT+TGG | + | chr7_1:64206828-64206847 | None:intergenic | 40.0% | |
| CAGAATGGATACTTGAGGTT+TGG | + | chr7_1:64206897-64206916 | None:intergenic | 40.0% | |
| CAAACCTCAAGTATCCATTC+TGG | - | chr7_1:64206895-64206914 | Msa1030240:CDS | 40.0% | |
| AACCTCAAGTATCCATTCTG+GGG | - | chr7_1:64206897-64206916 | Msa1030240:CDS | 40.0% | |
| ! | TGGTGATGTTTGTGCTTTGA+CGG | - | chr7_1:64207085-64207104 | Msa1030240:CDS | 40.0% |
| ! | GTTATCGAATGTGCTGTTCT+TGG | + | chr7_1:64207117-64207136 | None:intergenic | 40.0% |
| GCTAACGTGACACTGTTATA+CGG | - | chr7_1:64207164-64207183 | Msa1030240:CDS | 40.0% | |
| GGAATCACAACAGTAAGAGT+CGG | + | chr7_1:64207311-64207330 | None:intergenic | 40.0% | |
| TTGAAATGGAACGGAAGCTA+TGG | - | chr7_1:64207407-64207426 | Msa1030240:CDS | 40.0% | |
| TGAAATGGAACGGAAGCTAT+GGG | - | chr7_1:64207408-64207427 | Msa1030240:CDS | 40.0% | |
| AACTTCATGCACTTCACCAA+TGG | - | chr7_1:64207520-64207539 | Msa1030240:CDS | 40.0% | |
| AAAGAAGATGAATGAGGCAG+AGG | + | chr7_1:64206759-64206778 | None:intergenic | 40.0% | |
| TCATCTTGGCATAGACAAGT+TGG | + | chr7_1:64206828-64206847 | None:intergenic | 40.0% | |
| CAGAATGGATACTTGAGGTT+TGG | + | chr7_1:64206897-64206916 | None:intergenic | 40.0% | |
| CAAACCTCAAGTATCCATTC+TGG | - | chr7_1:64206895-64206914 | Msa1030240:CDS | 40.0% | |
| AACCTCAAGTATCCATTCTG+GGG | - | chr7_1:64206897-64206916 | Msa1030240:CDS | 40.0% | |
| ! | TGGTGATGTTTGTGCTTTGA+CGG | - | chr7_1:64207085-64207104 | Msa1030240:CDS | 40.0% |
| ! | GTTATCGAATGTGCTGTTCT+TGG | + | chr7_1:64207117-64207136 | None:intergenic | 40.0% |
| GCTAACGTGACACTGTTATA+CGG | - | chr7_1:64207164-64207183 | Msa1030240:CDS | 40.0% | |
| GGAATCACAACAGTAAGAGT+CGG | + | chr7_1:64207311-64207330 | None:intergenic | 40.0% | |
| TTGAAATGGAACGGAAGCTA+TGG | - | chr7_1:64207407-64207426 | Msa1030240:CDS | 40.0% | |
| TGAAATGGAACGGAAGCTAT+GGG | - | chr7_1:64207408-64207427 | Msa1030240:CDS | 40.0% | |
| AACTTCATGCACTTCACCAA+TGG | - | chr7_1:64207520-64207539 | Msa1030240:CDS | 40.0% | |
| TCTCTGTTATCTCCCCAGAA+TGG | + | chr7_1:64206912-64206931 | None:intergenic | 45.0% | |
| TCGCATGTGAGCTTCGTATT+AGG | + | chr7_1:64206960-64206979 | None:intergenic | 45.0% | |
| CGTAGCATTAACTGTGACAG+AGG | - | chr7_1:64207224-64207243 | Msa1030240:CDS | 45.0% | |
| AGTAAGAGTCGGAGTACAGA+AGG | + | chr7_1:64207300-64207319 | None:intergenic | 45.0% | |
| AGAACCAAGTTGTGCAGCTT+GGG | + | chr7_1:64207345-64207364 | None:intergenic | 45.0% | |
| !! | GCACAACTTGGTTCTGGAAA+TGG | - | chr7_1:64207350-64207369 | Msa1030240:CDS | 45.0% |
| GAAATGGAACGGAAGCTATG+GGG | - | chr7_1:64207409-64207428 | Msa1030240:CDS | 45.0% | |
| GGAAGCTATGGGGAATGTAA+GGG | - | chr7_1:64207419-64207438 | Msa1030240:CDS | 45.0% | |
| !! | TGTAAGGGATGCGTTGATTC+TGG | - | chr7_1:64207434-64207453 | Msa1030240:CDS | 45.0% |
| GTTGACATACTTGAGGCCAT+TGG | + | chr7_1:64207539-64207558 | None:intergenic | 45.0% | |
| TCTCTGTTATCTCCCCAGAA+TGG | + | chr7_1:64206912-64206931 | None:intergenic | 45.0% | |
| TCGCATGTGAGCTTCGTATT+AGG | + | chr7_1:64206960-64206979 | None:intergenic | 45.0% | |
| CGTAGCATTAACTGTGACAG+AGG | - | chr7_1:64207224-64207243 | Msa1030240:CDS | 45.0% | |
| AGTAAGAGTCGGAGTACAGA+AGG | + | chr7_1:64207300-64207319 | None:intergenic | 45.0% | |
| AGAACCAAGTTGTGCAGCTT+GGG | + | chr7_1:64207345-64207364 | None:intergenic | 45.0% | |
| !! | GCACAACTTGGTTCTGGAAA+TGG | - | chr7_1:64207350-64207369 | Msa1030240:CDS | 45.0% |
| GAAATGGAACGGAAGCTATG+GGG | - | chr7_1:64207409-64207428 | Msa1030240:CDS | 45.0% | |
| GGAAGCTATGGGGAATGTAA+GGG | - | chr7_1:64207419-64207438 | Msa1030240:CDS | 45.0% | |
| !! | TGTAAGGGATGCGTTGATTC+TGG | - | chr7_1:64207434-64207453 | Msa1030240:CDS | 45.0% |
| GTTGACATACTTGAGGCCAT+TGG | + | chr7_1:64207539-64207558 | None:intergenic | 45.0% | |
| !!! | TGCCACAGCAGTTTTAGCTG+CGG | - | chr7_1:64206864-64206883 | Msa1030240:CDS | 50.0% |
| TTCCGCAGCTAAAACTGCTG+TGG | + | chr7_1:64206869-64206888 | None:intergenic | 50.0% | |
| CTCCCCAGAATGGATACTTG+AGG | + | chr7_1:64206902-64206921 | None:intergenic | 50.0% | |
| TACGGTTGCAGTGTTGCAAC+TGG | - | chr7_1:64207182-64207201 | Msa1030240:CDS | 50.0% | |
| ACGGTTGCAGTGTTGCAACT+GGG | - | chr7_1:64207183-64207202 | Msa1030240:CDS | 50.0% | |
| CAGAACCAAGTTGTGCAGCT+TGG | + | chr7_1:64207346-64207365 | None:intergenic | 50.0% | |
| CAAGCTGCACAACTTGGTTC+TGG | - | chr7_1:64207344-64207363 | Msa1030240:CDS | 50.0% | |
| CGGAAGCTATGGGGAATGTA+AGG | - | chr7_1:64207418-64207437 | Msa1030240:CDS | 50.0% | |
| !! | AAGGGATGCGTTGATTCTGG+TGG | - | chr7_1:64207437-64207456 | Msa1030240:CDS | 50.0% |
| TTGATTCTGGTGGAGCGTGT+GGG | - | chr7_1:64207447-64207466 | Msa1030240:CDS | 50.0% | |
| !!! | TGCCACAGCAGTTTTAGCTG+CGG | - | chr7_1:64206864-64206883 | Msa1030240:CDS | 50.0% |
| TTCCGCAGCTAAAACTGCTG+TGG | + | chr7_1:64206869-64206888 | None:intergenic | 50.0% | |
| CTCCCCAGAATGGATACTTG+AGG | + | chr7_1:64206902-64206921 | None:intergenic | 50.0% | |
| TACGGTTGCAGTGTTGCAAC+TGG | - | chr7_1:64207182-64207201 | Msa1030240:CDS | 50.0% | |
| ACGGTTGCAGTGTTGCAACT+GGG | - | chr7_1:64207183-64207202 | Msa1030240:CDS | 50.0% | |
| CAGAACCAAGTTGTGCAGCT+TGG | + | chr7_1:64207346-64207365 | None:intergenic | 50.0% | |
| CAAGCTGCACAACTTGGTTC+TGG | - | chr7_1:64207344-64207363 | Msa1030240:CDS | 50.0% | |
| CGGAAGCTATGGGGAATGTA+AGG | - | chr7_1:64207418-64207437 | Msa1030240:CDS | 50.0% | |
| !! | AAGGGATGCGTTGATTCTGG+TGG | - | chr7_1:64207437-64207456 | Msa1030240:CDS | 50.0% |
| TTGATTCTGGTGGAGCGTGT+GGG | - | chr7_1:64207447-64207466 | Msa1030240:CDS | 50.0% | |
| ACGAAGCTCACATGCGACGA+CGG | - | chr7_1:64206963-64206982 | Msa1030240:CDS | 55.0% | |
| ! | GTTGATTCTGGTGGAGCGTG+TGG | - | chr7_1:64207446-64207465 | Msa1030240:CDS | 55.0% |
| ACGAAGCTCACATGCGACGA+CGG | - | chr7_1:64206963-64206982 | Msa1030240:CDS | 55.0% | |
| ! | GTTGATTCTGGTGGAGCGTG+TGG | - | chr7_1:64207446-64207465 | Msa1030240:CDS | 55.0% |
| GCAGCTTGGGCTCCCGAAAT+TGG | + | chr7_1:64207332-64207351 | None:intergenic | 60.0% | |
| GGAGCCCAAGCTGCACAACT+TGG | - | chr7_1:64207338-64207357 | Msa1030240:CDS | 60.0% | |
| GGTGGAGCGTGTGGGAATGA+TGG | - | chr7_1:64207455-64207474 | Msa1030240:CDS | 60.0% | |
| GGAGCGTGTGGGAATGATGG+AGG | - | chr7_1:64207458-64207477 | Msa1030240:CDS | 60.0% | |
| GCAGCTTGGGCTCCCGAAAT+TGG | + | chr7_1:64207332-64207351 | None:intergenic | 60.0% | |
| GGAGCCCAAGCTGCACAACT+TGG | - | chr7_1:64207338-64207357 | Msa1030240:CDS | 60.0% | |
| GGTGGAGCGTGTGGGAATGA+TGG | - | chr7_1:64207455-64207474 | Msa1030240:CDS | 60.0% | |
| GGAGCGTGTGGGAATGATGG+AGG | - | chr7_1:64207458-64207477 | Msa1030240:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 64206750 | 64207613 | 64206750 | ID=Msa1030240;Name=Msa1030240 |
| chr7_1 | mRNA | 64206750 | 64207613 | 64206750 | ID=Msa1030240-mRNA-1;Parent=Msa1030240;Name=Msa1030240-mRNA-1;_AED=0.48;_eAED=0.48;_QI=0|-1|0|1|-1|1|1|0|287 |
| chr7_1 | exon | 64206750 | 64207613 | 64206750 | ID=Msa1030240-mRNA-1:exon:14060;Parent=Msa1030240-mRNA-1 |
| chr7_1 | CDS | 64206750 | 64207613 | 64206750 | ID=Msa1030240-mRNA-1:cds;Parent=Msa1030240-mRNA-1 |
| Gene Sequence |
| Protein sequence |
