AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1349830


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1349830 MtrunA17_Chr8g0391441 97.647 170 3 1 1 170 1 169 4.25e-123 343
Msa1349830 MtrunA17_Chr5g0402421 60.227 176 50 3 1 156 1 176 3.80e-68 205
Msa1349830 MtrunA17_Chr8g0391431 63.190 163 42 3 12 156 11 173 1.11e-65 199
Msa1349830 MtrunA17_Chr4g0045011 50.602 166 71 2 14 170 34 197 2.25e-53 168
Msa1349830 MtrunA17_Chr8g0391401 50.714 140 66 3 30 167 4 142 4.86e-43 140
Msa1349830 MtrunA17_Chr4g0045001 56.667 120 51 1 25 144 42 160 1.14e-42 139
Msa1349830 MtrunA17_Chr2g0331531 33.728 169 109 1 5 170 3 171 3.67e-31 110
Msa1349830 MtrunA17_Chr6g0484871 43.066 137 74 3 34 170 17 149 1.09e-29 106
Msa1349830 MtrunA17_Chr1g0187341 53.509 114 52 1 34 147 11 123 3.49e-26 97.1
Msa1349830 MtrunA17_Chr5g0395991 40.909 110 50 4 48 142 3 112 9.59e-16 70.1
Msa1349830 MtrunA17_Chr4g0021021 32.414 145 64 4 29 140 25 168 1.17e-15 71.2
Msa1349830 MtrunA17_Chr3g0079081 27.972 143 64 2 29 137 53 190 7.44e-15 69.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1349830 AT1G14870.1 64.626 147 49 3 26 170 7 152 4.86e-63 191
Msa1349830 AT5G35525.1 64.029 139 48 2 29 166 10 147 9.84e-60 183
Msa1349830 AT1G14870.2 68.067 119 38 0 26 144 7 125 2.15e-57 176
Msa1349830 AT1G14880.1 59.864 147 56 3 26 170 6 151 3.76e-55 171
Msa1349830 AT1G49030.1 48.428 159 71 4 5 160 66 216 1.14e-45 149
Msa1349830 AT1G68610.1 56.934 137 56 2 33 166 17 153 6.13e-45 145
Msa1349830 AT3G18470.1 50.388 129 59 1 32 160 2 125 1.10e-42 139
Msa1349830 AT3G18460.1 50.685 146 63 4 18 162 42 179 1.29e-42 140
Msa1349830 AT3G18450.1 46.358 151 74 3 10 160 33 176 2.17e-42 140
Msa1349830 AT1G58320.1 50.413 121 56 3 34 153 16 133 1.19e-36 124
Msa1349830 AT1G52200.1 39.535 172 94 4 9 170 19 190 6.33e-34 118
Msa1349830 AT1G52200.2 39.583 144 79 2 9 144 19 162 2.24e-28 104
Msa1349830 AT1G68630.1 38.298 141 82 2 26 162 16 155 3.21e-28 103
Msa1349830 AT2G40935.8 34.028 144 73 4 22 144 34 176 5.05e-22 88.2
Msa1349830 AT2G40935.9 34.028 144 73 4 22 144 34 176 5.05e-22 88.2
Msa1349830 AT2G40935.1 34.028 144 73 4 22 144 34 176 5.05e-22 88.2
Msa1349830 AT2G40935.6 34.028 144 73 4 22 144 34 176 5.05e-22 88.2
Msa1349830 AT2G40935.5 34.028 144 73 4 22 144 34 176 5.05e-22 88.2
Msa1349830 AT2G45010.2 33.103 145 66 4 28 142 9 152 9.69e-20 82.4
Msa1349830 AT2G45010.1 33.103 145 66 4 28 142 55 198 1.31e-19 82.8
Msa1349830 AT5G51400.1 30.921 152 73 5 19 140 47 196 1.45e-17 77.4
Msa1349830 AT2G40935.3 31.250 144 66 5 22 144 34 165 5.89e-16 72.0
Msa1349830 AT2G40935.2 35.345 116 53 4 50 144 38 152 1.36e-14 68.2
Msa1349830 AT2G40935.7 35.345 116 53 4 50 144 38 152 1.36e-14 68.2
Msa1349830 AT2G40935.4 35.345 116 53 4 50 144 38 152 1.36e-14 68.2

Find 48 sgRNAs with CRISPR-Local

Find 140 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GACCATTCCTGGTTGGCATT+AGG 0.310976 tig0011086:-1528 None:intergenic
GCCACCAGCCACCGGTTTCC+CGG 0.332845 tig0011086:+1485 Msa1349830:CDS
CCTGGTTGGCATTAGGTTGT+TGG 0.349397 tig0011086:-1521 None:intergenic
ATAGACCCGTGGACCATTCC+TGG 0.365914 tig0011086:-1539 None:intergenic
CGTGGATTTGACATGGAACT+TGG 0.398558 tig0011086:+2046 Msa1349830:CDS
GCCTACATTCACCGGGAAAC+CGG 0.398595 tig0011086:-1496 None:intergenic
ATTTGTTGTGTGACGGGTTG+TGG 0.418139 tig0011086:+1887 Msa1349830:CDS
TGGTGTCCATGCATCACCTT+TGG 0.421844 tig0011086:+1705 Msa1349830:CDS
TTGCAGCTTGTGCTGTAAGC+GGG 0.457897 tig0011086:+1849 Msa1349830:intron
TACATTAATTTGTTGTGTGA+CGG 0.462544 tig0011086:+1880 Msa1349830:CDS
TGCTGGAGCTGTTGGTGCCA+TGG 0.464678 tig0011086:-2463 None:intergenic
GTGGCTGATTGTACGGTTGT+TGG 0.466033 tig0011086:-1467 None:intergenic
TGTTGGTGGCCTACATTCAC+CGG 0.467076 tig0011086:-1504 None:intergenic
TGTTCAACTGCTGGAGCTGT+TGG 0.477230 tig0011086:-2471 None:intergenic
CGAGTCATGTGTTCAACTGC+TGG 0.481564 tig0011086:-2480 None:intergenic
ACATTAATTTGTTGTGTGAC+GGG 0.489462 tig0011086:+1881 Msa1349830:CDS
AAATGTGGCACAAGGGAACC+AGG 0.489547 tig0011086:+2434 Msa1349830:CDS
GGTTGGCATTAGGTTGTTGG+TGG 0.517094 tig0011086:-1518 None:intergenic
GTGGCTGGTGGCTGATTGTA+CGG 0.517478 tig0011086:-1474 None:intergenic
TTGGTGCCATGGCTACTCCC+TGG 0.530182 tig0011086:-2452 None:intergenic
AACCTAATGCCAACCAGGAA+TGG 0.530457 tig0011086:+1526 Msa1349830:CDS
TTCACCGGGAAACCGGTGGC+TGG 0.540764 tig0011086:-1489 None:intergenic
GCCAACCAGGAATGGTCCAC+GGG 0.546652 tig0011086:+1534 Msa1349830:CDS
ACCGGGAAACCGGTGGCTGG+TGG 0.550790 tig0011086:-1486 None:intergenic
ACCGGTTTCCCGGTGAATGT+AGG 0.560070 tig0011086:+1495 Msa1349830:CDS
TACAATCAGCCACCAGCCAC+CGG 0.567328 tig0011086:+1477 Msa1349830:CDS
ATTGCAGCTTGTGCTGTAAG+CGG 0.567979 tig0011086:+1848 Msa1349830:intron
AAATTGGCTATAGGGTGGCA+TGG 0.569669 tig0011086:+2411 Msa1349830:intron
CCAACAACCTAATGCCAACC+AGG 0.574274 tig0011086:+1521 Msa1349830:CDS
TGGCATGGAAATGTGGCACA+AGG 0.574561 tig0011086:+2426 Msa1349830:CDS
TGCCAACCAGGAATGGTCCA+CGG 0.582618 tig0011086:+1533 Msa1349830:CDS
TGCAGCTTGTGCTGTAAGCG+GGG 0.590429 tig0011086:+1850 Msa1349830:intron
AATCTCAGCAATTCGTCCAA+AGG 0.597233 tig0011086:-1721 None:intergenic
ATTCGTCCAAAGGTGATGCA+TGG 0.598061 tig0011086:-1711 None:intergenic
TGAAAACCGTGGATTTGACA+TGG 0.599587 tig0011086:+2039 Msa1349830:CDS
ACCCGTGGACCATTCCTGGT+TGG 0.600890 tig0011086:-1535 None:intergenic
AATTGCTGAGATTGTTGACA+AGG 0.603304 tig0011086:+1731 Msa1349830:CDS
TATAGGGTGGCATGGAAATG+TGG 0.605383 tig0011086:+2419 Msa1349830:intron
AGGGAACCAGGGAGTAGCCA+TGG 0.614002 tig0011086:+2446 Msa1349830:CDS
CAAGTTCCATGTCAAATCCA+CGG 0.615456 tig0011086:-2045 None:intergenic
GTTGGTGGCCTACATTCACC+GGG 0.617396 tig0011086:-1503 None:intergenic
TACATTCACCGGGAAACCGG+TGG 0.629413 tig0011086:-1493 None:intergenic
AATGTGGCACAAGGGAACCA+GGG 0.650557 tig0011086:+2435 Msa1349830:CDS
GGCATGGAAATGTGGCACAA+GGG 0.652763 tig0011086:+2427 Msa1349830:CDS
TGAACTAAGCAATCACAACA+AGG 0.663046 tig0011086:-1971 None:intergenic
ATTGCTGAGATTGTTGACAA+GGG 0.678367 tig0011086:+1732 Msa1349830:CDS
GAAGCAGTCAAATAGACCCG+TGG 0.701710 tig0011086:-1550 None:intergenic
TATCGCGAGCTTGAAAACCG+TGG 0.704307 tig0011086:+2028 Msa1349830:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATTATTAAAATTTAGAAG+AGG - tig0011086:1642-1661 None:intergenic 10.0%
!!! TAAATTTCATTTCATTTTTT+AGG + tig0011086:1669-1688 Msa1349830:intron 10.0%
!! TAGTTATATATCATTATTAA+TGG - tig0011086:1787-1806 None:intergenic 10.0%
!!! TCTCTTAAATTTTTTATTTA+AGG + tig0011086:2188-2207 Msa1349830:intron 10.0%
!! TAATTATTAAAATTTAGAAG+AGG - tig0011086:1642-1661 None:intergenic 10.0%
!!! TAAATTTCATTTCATTTTTT+AGG + tig0011086:1669-1688 Msa1349830:intron 10.0%
!! TAGTTATATATCATTATTAA+TGG - tig0011086:1787-1806 None:intergenic 10.0%
!!! TCTCTTAAATTTTTTATTTA+AGG + tig0011086:2188-2207 Msa1349830:intron 10.0%
!!! ATCTTAATTCTTTTATCTTT+TGG + tig0011086:2103-2122 Msa1349830:intron 15.0%
!!! ATCTTAATTCTTTTATCTTT+TGG + tig0011086:2103-2122 Msa1349830:intron 15.0%
!! TTAGAAGAGGAATTAATTAA+TGG - tig0011086:1629-1648 None:intergenic 20.0%
!! CTTGTAAGATATTCATTAAT+TGG + tig0011086:1760-1779 Msa1349830:intron 20.0%
!!! ATTTATTTGAAATTGGCTAT+AGG + tig0011086:2402-2421 Msa1349830:intron 20.0%
!!! TTTATTTGAAATTGGCTATA+GGG + tig0011086:2403-2422 Msa1349830:intron 20.0%
!! TTAGAAGAGGAATTAATTAA+TGG - tig0011086:1629-1648 None:intergenic 20.0%
!! CTTGTAAGATATTCATTAAT+TGG + tig0011086:1760-1779 Msa1349830:intron 20.0%
!!! ATTTATTTGAAATTGGCTAT+AGG + tig0011086:2402-2421 Msa1349830:intron 20.0%
!!! TTTATTTGAAATTGGCTATA+GGG + tig0011086:2403-2422 Msa1349830:intron 20.0%
! GTTCTAATTACCACTTAATT+TGG + tig0011086:1598-1617 Msa1349830:intron 25.0%
! AAGAGGAATTAATTAATGGA+CGG - tig0011086:1625-1644 None:intergenic 25.0%
!!! TACATTAATTTGTTGTGTGA+CGG + tig0011086:1880-1899 Msa1349830:CDS 25.0%
!! ATTGTTGTCTCATTTTGTTA+CGG - tig0011086:1934-1953 None:intergenic 25.0%
! GTTCTAATTACCACTTAATT+TGG + tig0011086:1598-1617 Msa1349830:intron 25.0%
! AAGAGGAATTAATTAATGGA+CGG - tig0011086:1625-1644 None:intergenic 25.0%
!!! TACATTAATTTGTTGTGTGA+CGG + tig0011086:1880-1899 Msa1349830:CDS 25.0%
!! ATTGTTGTCTCATTTTGTTA+CGG - tig0011086:1934-1953 None:intergenic 25.0%
! TAACATACAAGTTTTGCAGT+CGG - tig0011086:1577-1596 None:intergenic 30.0%
!!! TTTTAGGTTGCATAACGTTT+TGG + tig0011086:1685-1704 Msa1349830:intron 30.0%
!! ACATTAATTTGTTGTGTGAC+GGG + tig0011086:1881-1900 Msa1349830:CDS 30.0%
! TCGACAATTCAATGTTTCTA+TGG + tig0011086:2146-2165 Msa1349830:intron 30.0%
! TAACATACAAGTTTTGCAGT+CGG - tig0011086:1577-1596 None:intergenic 30.0%
!!! TTTTAGGTTGCATAACGTTT+TGG + tig0011086:1685-1704 Msa1349830:intron 30.0%
!! ACATTAATTTGTTGTGTGAC+GGG + tig0011086:1881-1900 Msa1349830:CDS 30.0%
! TCGACAATTCAATGTTTCTA+TGG + tig0011086:2146-2165 Msa1349830:intron 30.0%
! TGTTGGAATTTTGAACTTGG+AGG - tig0011086:1453-1472 None:intergenic 35.0%
! GGTTGTTGGAATTTTGAACT+TGG - tig0011086:1456-1475 None:intergenic 35.0%
AATTGCTGAGATTGTTGACA+AGG + tig0011086:1731-1750 Msa1349830:CDS 35.0%
ATTGCTGAGATTGTTGACAA+GGG + tig0011086:1732-1751 Msa1349830:CDS 35.0%
TGAACTAAGCAATCACAACA+AGG - tig0011086:1974-1993 None:intergenic 35.0%
! ATTTGAAATTGGCTATAGGG+TGG + tig0011086:2406-2425 Msa1349830:intron 35.0%
! TGTTGGAATTTTGAACTTGG+AGG - tig0011086:1453-1472 None:intergenic 35.0%
! GGTTGTTGGAATTTTGAACT+TGG - tig0011086:1456-1475 None:intergenic 35.0%
AATTGCTGAGATTGTTGACA+AGG + tig0011086:1731-1750 Msa1349830:CDS 35.0%
ATTGCTGAGATTGTTGACAA+GGG + tig0011086:1732-1751 Msa1349830:CDS 35.0%
TGAACTAAGCAATCACAACA+AGG - tig0011086:1974-1993 None:intergenic 35.0%
! ATTTGAAATTGGCTATAGGG+TGG + tig0011086:2406-2425 Msa1349830:intron 35.0%
AATGGACGGTCCAAATTAAG+TGG - tig0011086:1611-1630 None:intergenic 40.0%
AATCTCAGCAATTCGTCCAA+AGG - tig0011086:1724-1743 None:intergenic 40.0%
TGAAAACCGTGGATTTGACA+TGG + tig0011086:2039-2058 Msa1349830:CDS 40.0%
CAAGTTCCATGTCAAATCCA+CGG - tig0011086:2048-2067 None:intergenic 40.0%
ATTTGTACCATTGTCGCATC+TGG + tig0011086:2336-2355 Msa1349830:intron 40.0%
AATGGACGGTCCAAATTAAG+TGG - tig0011086:1611-1630 None:intergenic 40.0%
AATCTCAGCAATTCGTCCAA+AGG - tig0011086:1724-1743 None:intergenic 40.0%
TGAAAACCGTGGATTTGACA+TGG + tig0011086:2039-2058 Msa1349830:CDS 40.0%
CAAGTTCCATGTCAAATCCA+CGG - tig0011086:2048-2067 None:intergenic 40.0%
ATTTGTACCATTGTCGCATC+TGG + tig0011086:2336-2355 Msa1349830:intron 40.0%
AACCTAATGCCAACCAGGAA+TGG + tig0011086:1526-1545 Msa1349830:CDS 45.0%
ATTCGTCCAAAGGTGATGCA+TGG - tig0011086:1714-1733 None:intergenic 45.0%
ATTGCAGCTTGTGCTGTAAG+CGG + tig0011086:1848-1867 Msa1349830:intron 45.0%
!! ATTTGTTGTGTGACGGGTTG+TGG + tig0011086:1887-1906 Msa1349830:CDS 45.0%
CGTGGATTTGACATGGAACT+TGG + tig0011086:2046-2065 Msa1349830:CDS 45.0%
AACTCATCCAGATGCGACAA+TGG - tig0011086:2346-2365 None:intergenic 45.0%
AAATTGGCTATAGGGTGGCA+TGG + tig0011086:2411-2430 Msa1349830:intron 45.0%
TATAGGGTGGCATGGAAATG+TGG + tig0011086:2419-2438 Msa1349830:intron 45.0%
AACCTAATGCCAACCAGGAA+TGG + tig0011086:1526-1545 Msa1349830:CDS 45.0%
ATTCGTCCAAAGGTGATGCA+TGG - tig0011086:1714-1733 None:intergenic 45.0%
ATTGCAGCTTGTGCTGTAAG+CGG + tig0011086:1848-1867 Msa1349830:intron 45.0%
!! ATTTGTTGTGTGACGGGTTG+TGG + tig0011086:1887-1906 Msa1349830:CDS 45.0%
CGTGGATTTGACATGGAACT+TGG + tig0011086:2046-2065 Msa1349830:CDS 45.0%
AACTCATCCAGATGCGACAA+TGG - tig0011086:2346-2365 None:intergenic 45.0%
AAATTGGCTATAGGGTGGCA+TGG + tig0011086:2411-2430 Msa1349830:intron 45.0%
TATAGGGTGGCATGGAAATG+TGG + tig0011086:2419-2438 Msa1349830:intron 45.0%
!!! TTAATTTATTTATTTGAAAT+TGG + tig0011086:2395-2414 Msa1349830:intron 5.0%
!!! TTAATTTATTTATTTGAAAT+TGG + tig0011086:2395-2414 Msa1349830:intron 5.0%
GTGGCTGATTGTACGGTTGT+TGG - tig0011086:1470-1489 None:intergenic 50.0%
!! TGTTGGTGGCCTACATTCAC+CGG - tig0011086:1507-1526 None:intergenic 50.0%
! GGTTGGCATTAGGTTGTTGG+TGG - tig0011086:1521-1540 None:intergenic 50.0%
! CCTGGTTGGCATTAGGTTGT+TGG - tig0011086:1524-1543 None:intergenic 50.0%
CCAACAACCTAATGCCAACC+AGG + tig0011086:1521-1540 Msa1349830:CDS 50.0%
GACCATTCCTGGTTGGCATT+AGG - tig0011086:1531-1550 None:intergenic 50.0%
GAAGCAGTCAAATAGACCCG+TGG - tig0011086:1553-1572 None:intergenic 50.0%
TGGTGTCCATGCATCACCTT+TGG + tig0011086:1705-1724 Msa1349830:CDS 50.0%
TTGCAGCTTGTGCTGTAAGC+GGG + tig0011086:1849-1868 Msa1349830:intron 50.0%
TATCGCGAGCTTGAAAACCG+TGG + tig0011086:2028-2047 Msa1349830:CDS 50.0%
TGGCATGGAAATGTGGCACA+AGG + tig0011086:2426-2445 Msa1349830:CDS 50.0%
GGCATGGAAATGTGGCACAA+GGG + tig0011086:2427-2446 Msa1349830:CDS 50.0%
AAATGTGGCACAAGGGAACC+AGG + tig0011086:2434-2453 Msa1349830:CDS 50.0%
AATGTGGCACAAGGGAACCA+GGG + tig0011086:2435-2454 Msa1349830:CDS 50.0%
TGTTCAACTGCTGGAGCTGT+TGG - tig0011086:2474-2493 None:intergenic 50.0%
CGAGTCATGTGTTCAACTGC+TGG - tig0011086:2483-2502 None:intergenic 50.0%
GTGGCTGATTGTACGGTTGT+TGG - tig0011086:1470-1489 None:intergenic 50.0%
!! TGTTGGTGGCCTACATTCAC+CGG - tig0011086:1507-1526 None:intergenic 50.0%
! GGTTGGCATTAGGTTGTTGG+TGG - tig0011086:1521-1540 None:intergenic 50.0%
! CCTGGTTGGCATTAGGTTGT+TGG - tig0011086:1524-1543 None:intergenic 50.0%
CCAACAACCTAATGCCAACC+AGG + tig0011086:1521-1540 Msa1349830:CDS 50.0%
GACCATTCCTGGTTGGCATT+AGG - tig0011086:1531-1550 None:intergenic 50.0%
GAAGCAGTCAAATAGACCCG+TGG - tig0011086:1553-1572 None:intergenic 50.0%
TGGTGTCCATGCATCACCTT+TGG + tig0011086:1705-1724 Msa1349830:CDS 50.0%
TTGCAGCTTGTGCTGTAAGC+GGG + tig0011086:1849-1868 Msa1349830:intron 50.0%
TATCGCGAGCTTGAAAACCG+TGG + tig0011086:2028-2047 Msa1349830:CDS 50.0%
TGGCATGGAAATGTGGCACA+AGG + tig0011086:2426-2445 Msa1349830:CDS 50.0%
GGCATGGAAATGTGGCACAA+GGG + tig0011086:2427-2446 Msa1349830:CDS 50.0%
AAATGTGGCACAAGGGAACC+AGG + tig0011086:2434-2453 Msa1349830:CDS 50.0%
AATGTGGCACAAGGGAACCA+GGG + tig0011086:2435-2454 Msa1349830:CDS 50.0%
TGTTCAACTGCTGGAGCTGT+TGG - tig0011086:2474-2493 None:intergenic 50.0%
CGAGTCATGTGTTCAACTGC+TGG - tig0011086:2483-2502 None:intergenic 50.0%
GTGGCTGGTGGCTGATTGTA+CGG - tig0011086:1477-1496 None:intergenic 55.0%
TACAATCAGCCACCAGCCAC+CGG + tig0011086:1477-1496 Msa1349830:CDS 55.0%
TACATTCACCGGGAAACCGG+TGG - tig0011086:1496-1515 None:intergenic 55.0%
! ACCGGTTTCCCGGTGAATGT+AGG + tig0011086:1495-1514 Msa1349830:CDS 55.0%
GCCTACATTCACCGGGAAAC+CGG - tig0011086:1499-1518 None:intergenic 55.0%
!! GTTGGTGGCCTACATTCACC+GGG - tig0011086:1506-1525 None:intergenic 55.0%
TGCCAACCAGGAATGGTCCA+CGG + tig0011086:1533-1552 Msa1349830:CDS 55.0%
ATAGACCCGTGGACCATTCC+TGG - tig0011086:1542-1561 None:intergenic 55.0%
TGCAGCTTGTGCTGTAAGCG+GGG + tig0011086:1850-1869 Msa1349830:intron 55.0%
GTGGCTGGTGGCTGATTGTA+CGG - tig0011086:1477-1496 None:intergenic 55.0%
TACAATCAGCCACCAGCCAC+CGG + tig0011086:1477-1496 Msa1349830:CDS 55.0%
TACATTCACCGGGAAACCGG+TGG - tig0011086:1496-1515 None:intergenic 55.0%
! ACCGGTTTCCCGGTGAATGT+AGG + tig0011086:1495-1514 Msa1349830:CDS 55.0%
GCCTACATTCACCGGGAAAC+CGG - tig0011086:1499-1518 None:intergenic 55.0%
!! GTTGGTGGCCTACATTCACC+GGG - tig0011086:1506-1525 None:intergenic 55.0%
TGCCAACCAGGAATGGTCCA+CGG + tig0011086:1533-1552 Msa1349830:CDS 55.0%
ATAGACCCGTGGACCATTCC+TGG - tig0011086:1542-1561 None:intergenic 55.0%
TGCAGCTTGTGCTGTAAGCG+GGG + tig0011086:1850-1869 Msa1349830:intron 55.0%
GCCAACCAGGAATGGTCCAC+GGG + tig0011086:1534-1553 Msa1349830:CDS 60.0%
ACCCGTGGACCATTCCTGGT+TGG - tig0011086:1538-1557 None:intergenic 60.0%
AGGGAACCAGGGAGTAGCCA+TGG + tig0011086:2446-2465 Msa1349830:CDS 60.0%
!! TTGGTGCCATGGCTACTCCC+TGG - tig0011086:2455-2474 None:intergenic 60.0%
!! TGCTGGAGCTGTTGGTGCCA+TGG - tig0011086:2466-2485 None:intergenic 60.0%
GCCAACCAGGAATGGTCCAC+GGG + tig0011086:1534-1553 Msa1349830:CDS 60.0%
ACCCGTGGACCATTCCTGGT+TGG - tig0011086:1538-1557 None:intergenic 60.0%
AGGGAACCAGGGAGTAGCCA+TGG + tig0011086:2446-2465 Msa1349830:CDS 60.0%
!! TTGGTGCCATGGCTACTCCC+TGG - tig0011086:2455-2474 None:intergenic 60.0%
!! TGCTGGAGCTGTTGGTGCCA+TGG - tig0011086:2466-2485 None:intergenic 60.0%
TTCACCGGGAAACCGGTGGC+TGG - tig0011086:1492-1511 None:intergenic 65.0%
TTCACCGGGAAACCGGTGGC+TGG - tig0011086:1492-1511 None:intergenic 65.0%
!! GCCACCAGCCACCGGTTTCC+CGG + tig0011086:1485-1504 Msa1349830:CDS 70.0%
ACCGGGAAACCGGTGGCTGG+TGG - tig0011086:1489-1508 None:intergenic 70.0%
!! GCCACCAGCCACCGGTTTCC+CGG + tig0011086:1485-1504 Msa1349830:CDS 70.0%
ACCGGGAAACCGGTGGCTGG+TGG - tig0011086:1489-1508 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
tig0011086 gene 1444 2506 1444 ID=Msa1349830;Name=Msa1349830
tig0011086 mRNA 1444 2506 1444 ID=Msa1349830-mRNA-1;Parent=Msa1349830;Name=Msa1349830-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0|0|0|1|1|1|4|0|170
tig0011086 exon 1444 1588 1444 ID=Msa1349830-mRNA-1:exon:7153;Parent=Msa1349830-mRNA-1
tig0011086 exon 1691 1762 1691 ID=Msa1349830-mRNA-1:exon:7154;Parent=Msa1349830-mRNA-1
tig0011086 exon 1855 2067 1855 ID=Msa1349830-mRNA-1:exon:7155;Parent=Msa1349830-mRNA-1
tig0011086 exon 2424 2506 2424 ID=Msa1349830-mRNA-1:exon:7156;Parent=Msa1349830-mRNA-1
tig0011086 CDS 1444 1588 1444 ID=Msa1349830-mRNA-1:cds;Parent=Msa1349830-mRNA-1
tig0011086 CDS 1691 1762 1691 ID=Msa1349830-mRNA-1:cds;Parent=Msa1349830-mRNA-1
tig0011086 CDS 1855 2067 1855 ID=Msa1349830-mRNA-1:cds;Parent=Msa1349830-mRNA-1
tig0011086 CDS 2424 2506 2424 ID=Msa1349830-mRNA-1:cds;Parent=Msa1349830-mRNA-1
Gene Sequence

>Msa1349830

ATGAATCCTCCAAGTTCAAAATTCCAACAACCGTACAATCAGCCACCAGCCACCGGTTTCCCGGTGAATGTAGGCCACCAACAACCTAATGCCAACCAGGAATGGTCCACGGGTCTATTTGACTGCTTCTCCGACTGCAAAACTTGTTGCATAACGTTTTGGTGTCCATGCATCACCTTTGGACGAATTGCTGAGATTGTTGACAAGGGATCAACTTCTTGTGCTGTAAGCGGGGCTCTATATACATTAATTTGTTGTGTGACGGGTTGTGGTTGTTTATACTCGTGCATCTACCGTAACAAAATGAGACAACAATACATGCTCAAAGACACTCCTTGTTGTGATTGCTTAGTTCATTGTTGTTGTGAATCATGTGCATTATGTCAAGAATATCGCGAGCTTGAAAACCGTGGATTTGACATGGAACTTGGGTGGCATGGAAATGTGGCACAAGGGAACCAGGGAGTAGCCATGGCACCAACAGCTCCAGCAGTTGAACACATGACTCGTTGA

Protein sequence

>Msa1349830

MNPPSSKFQQPYNQPPATGFPVNVGHQQPNANQEWSTGLFDCFSDCKTCCITFWCPCITFGRIAEIVDKGSTSCAVSGALYTLICCVTGCGCLYSCIYRNKMRQQYMLKDTPCCDCLVHCCCESCALCQEYRELENRGFDMELGWHGNVAQGNQGVAMAPTAPAVEHMTR*