AlfalfaGEDB | Msa0481800

M. sativa cultivar zhongmu-4 / Msa0481800

KEGG: K12733
GO: GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:0140096 GO:1901564
PFAM: PF00160.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0481800	XP_004494215.1	98.780	164	2	0	1	164	1	164	2.82e-118	341

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0481800	sp\|Q9SIH1\|CP18B_ARATH	86.585	164	22	0	1	164	1	164	3.01e-105	301

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0481800	A0A1S2XVA2	98.780	164	2	0	1	164	1	164	1.35e-118	341

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0003330	Msa0481800	0.809039	2.304491e-50	-8.615850e-47
Msa0128330	Msa0481800	0.850220	1.954385e-60	-8.615850e-47
Msa0128750	Msa0481800	0.809777	1.600301e-50	-8.615850e-47
Msa0167860	Msa0481800	0.807789	4.257047e-50	-8.615850e-47
Msa0174580	Msa0481800	0.859549	3.829906e-63	-8.615850e-47
Msa0315430	Msa0481800	0.827118	1.866358e-54	-8.615850e-47
Msa0481520	Msa0481800	0.807665	4.524815e-50	-8.615850e-47
Msa0481800	Msa0574780	0.805882	1.076833e-49	-8.615850e-47
Msa0481800	Msa0579830	0.829834	4.124680e-55	-8.615850e-47
Msa0481800	Msa0649890	0.835954	1.241692e-56	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0481800	MtrunA17_Chr7g0266721	98.780	164	2	0	1	164	1	164	1.55e-121	339
Msa0481800	MtrunA17_Chr8g0351571	50.331	151	75	0	12	162	3	153	2.26e-53	166
Msa0481800	MtrunA17_Chr2g0321111	52.597	154	72	1	10	162	461	614	1.75e-52	176
Msa0481800	MtrunA17_Chr5g0401141	52.055	146	70	0	12	157	347	492	1.46e-49	167
Msa0481800	MtrunA17_Chr2g0288371	53.247	154	70	2	11	162	14	167	5.05e-43	149
Msa0481800	MtrunA17_Chr1g0193711	50.336	149	68	5	17	160	97	244	4.46e-40	135
Msa0481800	MtrunA17_Chr1g0213971	49.306	144	68	4	18	157	93	235	1.02e-39	134
Msa0481800	MtrunA17_Chr7g0270991	50.000	146	68	4	17	158	108	252	2.18e-39	134
Msa0481800	MtrunA17_Chr4g0045321	48.684	152	65	4	19	158	18	168	4.13e-38	133
Msa0481800	MtrunA17_Chr6g0484281	42.138	159	84	2	12	162	3	161	5.09e-37	134

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0481800	AT2G36130.1	86.585	164	22	0	1	164	1	164	3.06e-106	301
Msa0481800	AT1G01940.1	50.331	151	75	0	12	162	3	153	3.80e-53	166
Msa0481800	AT3G44600.1	52.500	160	75	1	4	162	469	628	7.84e-53	177
Msa0481800	AT5G67530.1	49.669	151	76	0	12	162	346	496	1.99e-49	167
Msa0481800	AT4G33060.1	50.968	155	73	3	11	162	14	168	4.50e-44	152
Msa0481800	AT3G62030.3	51.748	143	64	3	19	157	108	249	1.97e-38	132
Msa0481800	AT3G62030.1	51.748	143	64	3	19	157	109	250	2.06e-38	132
Msa0481800	AT1G53720.2	40.994	161	87	3	12	164	3	163	6.50e-38	133
Msa0481800	AT3G62030.2	51.748	143	64	3	19	157	162	303	8.02e-38	132
Msa0481800	AT5G13120.2	48.252	143	69	4	19	157	103	244	1.32e-37	129

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Find 70 sgRNAs with CRISPR-Local

Find 214 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACGATAGGTCATAAACA+TGG	0.677534	3_3:-88176708	None:intergenic
AAAATGTGGGCAAGCGCAGA+AGG	0.539071	3_3:+88173889	Msa0481800:exon
AAACAAGAGCTGAAGCACAC+TGG	0.591406	3_3:+88174691	Msa0481800:CDS
AACTGACTTCCGTTAGTATT+AGG	0.209355	3_3:-88174745	None:intergenic
AAGCGCAGAAGGTGGTGCTC+CGG	0.493778	3_3:+88173900	Msa0481800:CDS
AAGTACAGTTCCAAAACGAT+AGG	0.613096	3_3:-88176720	None:intergenic
AATAATAATAATTACCTCGA+CGG	0.570411	3_3:-88173956	None:intergenic
AATATTCGGAAGAGTAAGTC+GGG	0.456454	3_3:+88175605	Msa0481800:CDS
AATGCTGGCCCTAATACTAA+CGG	0.646655	3_3:+88174736	Msa0481800:CDS
ACATAAATTTATTTGGAACT+TGG	0.432020	3_3:-88176743	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTAAACCCTGATACAGAATT+AGG	+	chr3_3:88174001-88174020	Msa0481800:intron	30.0%
TAAACCCTGATACAGAATTA+GGG	+	chr3_3:88174002-88174021	Msa0481800:intron	30.0%
AAAACCCTAATTCTGTATCA+GGG	-	chr3_3:88174009-88174028	None:intergenic	30.0%
TAAAACCCTAATTCTGTATC+AGG	-	chr3_3:88174010-88174029	None:intergenic	30.0%
TATCATAATATGGGTCTGTT+TGG	+	chr3_3:88174357-88174376	Msa0481800:intron	30.0%
ATCAACTGACATAAACTGTT+TGG	+	chr3_3:88174398-88174417	Msa0481800:intron	30.0%
TCAACTGACATAAACTGTTT+GGG	+	chr3_3:88174399-88174418	Msa0481800:intron	30.0%
TGAAGTTGTTTATTCAAAGG+GGG	+	chr3_3:88174581-88174600	Msa0481800:intron	30.0%
ATAAATTACCATCCAAAGAG+GGG	-	chr3_3:88174792-88174811	None:intergenic	30.0%
GATAAATTACCATCCAAAGA+GGG	-	chr3_3:88174793-88174812	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_3	gene	88173831	88176993	88173831	ID=Msa0481800;Name=Msa0481800
chr3_3	mRNA	88173831	88176993	88173831	ID=Msa0481800-mRNA-1;Parent=Msa0481800;Name=Msa0481800-mRNA-1;_AED=0.06;_eAED=0.06;_QI=61\|1\|1\|1\|0.8\|0.83\|6\|443\|164
chr3_3	exon	88173831	88173963	88173831	ID=Msa0481800-mRNA-1:exon:25608;Parent=Msa0481800-mRNA-1
chr3_3	exon	88174057	88174152	88174057	ID=Msa0481800-mRNA-1:exon:25609;Parent=Msa0481800-mRNA-1
chr3_3	exon	88174247	88174308	88174247	ID=Msa0481800-mRNA-1:exon:25610;Parent=Msa0481800-mRNA-1
chr3_3	exon	88174669	88174802	88174669	ID=Msa0481800-mRNA-1:exon:25611;Parent=Msa0481800-mRNA-1
chr3_3	exon	88175595	88175679	88175595	ID=Msa0481800-mRNA-1:exon:25612;Parent=Msa0481800-mRNA-1
chr3_3	exon	88176505	88176993	88176505	ID=Msa0481800-mRNA-1:exon:25613;Parent=Msa0481800-mRNA-1
chr3_3	five_prime_UTR	88173831	88173891	88173831	ID=Msa0481800-mRNA-1:five_prime_utr;Parent=Msa0481800-mRNA-1
chr3_3	CDS	88173892	88173963	88173892	ID=Msa0481800-mRNA-1:cds;Parent=Msa0481800-mRNA-1
chr3_3	CDS	88174057	88174152	88174057	ID=Msa0481800-mRNA-1:cds;Parent=Msa0481800-mRNA-1
chr3_3	CDS	88174247	88174308	88174247	ID=Msa0481800-mRNA-1:cds;Parent=Msa0481800-mRNA-1
chr3_3	CDS	88174669	88174802	88174669	ID=Msa0481800-mRNA-1:cds;Parent=Msa0481800-mRNA-1
chr3_3	CDS	88175595	88175679	88175595	ID=Msa0481800-mRNA-1:cds;Parent=Msa0481800-mRNA-1
chr3_3	CDS	88176505	88176550	88176505	ID=Msa0481800-mRNA-1:cds;Parent=Msa0481800-mRNA-1
chr3_3	three_prime_UTR	88176551	88176993	88176551	ID=Msa0481800-mRNA-1:three_prime_utr;Parent=Msa0481800-mRNA-1

Gene Sequence

>Msa0481800

ATGTGGGCAAGCGCAGAAGGTGGTGCTCCGGAGGTTACTCTAGAAACTTCCATGGGTTCATTCACCGTCGAGTTGTACTACAAGCATGCACCTAGAACTTGTAGGAACTTCATTGAACTATCTCGTAGAGGTTATTACGACAACGTTAAGTTCCACAGAATCATCAAGGATTTCATAGTACAAGGTGGGGATCCCACTGGGACAGGAAGAGGAGGAGAATCCATCTATGGTGCTAAATTTGAAGATGAGATTAAACAAGAGCTGAAGCACACTGGAGCTGGTATTTTATCAATGGCTAATGCTGGCCCTAATACTAACGGAAGTCAGTTCTTTATTACTCTCGCACCGTGCCCCTCTTTGGATGGAAAACACACAATATTCGGAAGAGTAAGTCGGGGAATGGAAATCATCAAAAGACTTGGCAGTGTCCAAACAGATAACAATGACAGGCCCGTCCATGATGTGAAGATACTACGGACATCAGTCAAGGATTGA

Protein sequence

>Msa0481800

MWASAEGGAPEVTLETSMGSFTVELYYKHAPRTCRNFIELSRRGYYDNVKFHRIIKDFIVQGGDPTGTGRGGESIYGAKFEDEIKQELKHTGAGILSMANAGPNTNGSQFFITLAPCPSLDGKHTIFGRVSRGMEIIKRLGSVQTDNNDRPVHDVKILRTSVKD*