Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0481800 | XP_004494215.1 | 98.780 | 164 | 2 | 0 | 1 | 164 | 1 | 164 | 2.82e-118 | 341 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0481800 | sp|Q9SIH1|CP18B_ARATH | 86.585 | 164 | 22 | 0 | 1 | 164 | 1 | 164 | 3.01e-105 | 301 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0481800 | A0A1S2XVA2 | 98.780 | 164 | 2 | 0 | 1 | 164 | 1 | 164 | 1.35e-118 | 341 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003330 | Msa0481800 | 0.809039 | 2.304491e-50 | -8.615850e-47 |
| Msa0128330 | Msa0481800 | 0.850220 | 1.954385e-60 | -8.615850e-47 |
| Msa0128750 | Msa0481800 | 0.809777 | 1.600301e-50 | -8.615850e-47 |
| Msa0167860 | Msa0481800 | 0.807789 | 4.257047e-50 | -8.615850e-47 |
| Msa0174580 | Msa0481800 | 0.859549 | 3.829906e-63 | -8.615850e-47 |
| Msa0481520 | Msa0481800 | 0.807665 | 4.524815e-50 | -8.615850e-47 |
| Msa0481800 | Msa0574780 | 0.805882 | 1.076833e-49 | -8.615850e-47 |
| Msa0481800 | Msa0579830 | 0.829834 | 4.124680e-55 | -8.615850e-47 |
| Msa0481800 | Msa0649890 | 0.835954 | 1.241692e-56 | -8.615850e-47 |
| Msa0481800 | Msa0694400 | 0.824114 | 9.616788e-54 | -8.615850e-47 |
| Msa0481800 | Msa1080390 | 0.975714 | 1.838636e-140 | -8.615850e-47 |
| Msa0481800 | Msa1125900 | 0.986480 | 6.287349e-167 | -8.615850e-47 |
| Msa0481800 | Msa1126100 | 0.978078 | 4.446774e-145 | -8.615850e-47 |
| Msa0481800 | Msa1164150 | 0.810022 | 1.416925e-50 | -8.615850e-47 |
| Msa0481800 | Msa1180000 | 0.811095 | 8.308201e-51 | -8.615850e-47 |
| Msa0481800 | Msa1270640 | 0.811942 | 5.440006e-51 | -8.615850e-47 |
| Msa0481800 | Msa1270710 | 0.808685 | 2.743305e-50 | -8.615850e-47 |
| Msa0481800 | Msa1385480 | 0.814715 | 1.337798e-51 | -8.615850e-47 |
| Msa0481800 | Msa1432310 | 0.821556 | 3.791244e-53 | -8.615850e-47 |
| Msa0481800 | Msa1446410 | 0.811702 | 6.133260e-51 | -8.615850e-47 |
| Msa0481800 | Msa1463570 | 0.853044 | 3.099107e-61 | -8.615850e-47 |
| Msa0315430 | Msa0481800 | 0.827118 | 1.866358e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0481800 | MtrunA17_Chr7g0266721 | 98.780 | 164 | 2 | 0 | 1 | 164 | 1 | 164 | 1.55e-121 | 339 |
| Msa0481800 | MtrunA17_Chr8g0351571 | 50.331 | 151 | 75 | 0 | 12 | 162 | 3 | 153 | 2.26e-53 | 166 |
| Msa0481800 | MtrunA17_Chr2g0321111 | 52.597 | 154 | 72 | 1 | 10 | 162 | 461 | 614 | 1.75e-52 | 176 |
| Msa0481800 | MtrunA17_Chr5g0401141 | 52.055 | 146 | 70 | 0 | 12 | 157 | 347 | 492 | 1.46e-49 | 167 |
| Msa0481800 | MtrunA17_Chr2g0288371 | 53.247 | 154 | 70 | 2 | 11 | 162 | 14 | 167 | 5.05e-43 | 149 |
| Msa0481800 | MtrunA17_Chr1g0193711 | 50.336 | 149 | 68 | 5 | 17 | 160 | 97 | 244 | 4.46e-40 | 135 |
| Msa0481800 | MtrunA17_Chr1g0213971 | 49.306 | 144 | 68 | 4 | 18 | 157 | 93 | 235 | 1.02e-39 | 134 |
| Msa0481800 | MtrunA17_Chr7g0270991 | 50.000 | 146 | 68 | 4 | 17 | 158 | 108 | 252 | 2.18e-39 | 134 |
| Msa0481800 | MtrunA17_Chr4g0045321 | 48.684 | 152 | 65 | 4 | 19 | 158 | 18 | 168 | 4.13e-38 | 133 |
| Msa0481800 | MtrunA17_Chr6g0484281 | 42.138 | 159 | 84 | 2 | 12 | 162 | 3 | 161 | 5.09e-37 | 134 |
| Msa0481800 | MtrunA17_Chr8g0353571 | 47.552 | 143 | 64 | 4 | 19 | 151 | 32 | 173 | 5.65e-37 | 125 |
| Msa0481800 | MtrunA17_Chr7g0274841 | 47.973 | 148 | 65 | 4 | 19 | 155 | 18 | 164 | 9.14e-37 | 124 |
| Msa0481800 | MtrunA17_Chr8g0374621 | 44.242 | 165 | 74 | 5 | 10 | 157 | 4 | 167 | 1.32e-36 | 129 |
| Msa0481800 | MtrunA17_Chr8g0357591 | 41.509 | 159 | 85 | 2 | 12 | 162 | 3 | 161 | 1.30e-35 | 130 |
| Msa0481800 | MtrunA17_Chr3g0145501 | 51.079 | 139 | 52 | 5 | 18 | 143 | 25 | 160 | 4.71e-35 | 120 |
| Msa0481800 | MtrunA17_Chr4g0038431 | 48.684 | 152 | 57 | 6 | 10 | 143 | 4 | 152 | 9.09e-35 | 119 |
| Msa0481800 | MtrunA17_Chr3g0104751 | 49.624 | 133 | 55 | 4 | 19 | 140 | 48 | 179 | 1.07e-34 | 120 |
| Msa0481800 | MtrunA17_Chr7g0260441 | 47.297 | 148 | 64 | 5 | 23 | 158 | 25 | 170 | 5.47e-34 | 125 |
| Msa0481800 | MtrunA17_Chr3g0113441 | 48.889 | 135 | 57 | 4 | 17 | 140 | 76 | 209 | 3.94e-33 | 117 |
| Msa0481800 | MtrunA17_Chr4g0037281 | 40.945 | 127 | 63 | 3 | 22 | 137 | 64 | 189 | 2.61e-26 | 99.4 |
| Msa0481800 | MtrunA17_Chr1g0199071 | 33.113 | 151 | 95 | 2 | 13 | 163 | 83 | 227 | 2.38e-23 | 92.0 |
| Msa0481800 | MtrunA17_Chr3g0138061 | 38.286 | 175 | 89 | 6 | 1 | 158 | 1 | 173 | 5.14e-21 | 89.0 |
| Msa0481800 | MtrunA17_Chr1g0163031 | 30.263 | 152 | 99 | 3 | 13 | 163 | 82 | 227 | 1.09e-19 | 82.4 |
| Msa0481800 | MtrunA17_Chr1g0149061 | 42.424 | 132 | 62 | 4 | 24 | 143 | 26 | 155 | 4.55e-19 | 83.2 |
| Msa0481800 | MtrunA17_Chr3g0122871 | 46.875 | 64 | 34 | 0 | 88 | 151 | 56 | 119 | 1.36e-13 | 63.5 |
| Msa0481800 | MtrunA17_Chr5g0416441 | 31.544 | 149 | 84 | 5 | 8 | 145 | 24 | 165 | 9.38e-13 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0481800 | AT2G36130.1 | 86.585 | 164 | 22 | 0 | 1 | 164 | 1 | 164 | 3.06e-106 | 301 |
| Msa0481800 | AT1G01940.1 | 50.331 | 151 | 75 | 0 | 12 | 162 | 3 | 153 | 3.80e-53 | 166 |
| Msa0481800 | AT3G44600.1 | 52.500 | 160 | 75 | 1 | 4 | 162 | 469 | 628 | 7.84e-53 | 177 |
| Msa0481800 | AT5G67530.1 | 49.669 | 151 | 76 | 0 | 12 | 162 | 346 | 496 | 1.99e-49 | 167 |
| Msa0481800 | AT4G33060.1 | 50.968 | 155 | 73 | 3 | 11 | 162 | 14 | 168 | 4.50e-44 | 152 |
| Msa0481800 | AT3G62030.3 | 51.748 | 143 | 64 | 3 | 19 | 157 | 108 | 249 | 1.97e-38 | 132 |
| Msa0481800 | AT3G62030.1 | 51.748 | 143 | 64 | 3 | 19 | 157 | 109 | 250 | 2.06e-38 | 132 |
| Msa0481800 | AT1G53720.2 | 40.994 | 161 | 87 | 3 | 12 | 164 | 3 | 163 | 6.50e-38 | 133 |
| Msa0481800 | AT3G62030.2 | 51.748 | 143 | 64 | 3 | 19 | 157 | 162 | 303 | 8.02e-38 | 132 |
| Msa0481800 | AT5G13120.2 | 48.252 | 143 | 69 | 4 | 19 | 157 | 103 | 244 | 1.32e-37 | 129 |
| Msa0481800 | AT5G13120.1 | 48.252 | 143 | 69 | 4 | 19 | 157 | 107 | 248 | 1.61e-37 | 129 |
| Msa0481800 | AT2G21130.1 | 46.914 | 162 | 66 | 6 | 7 | 157 | 14 | 166 | 8.75e-37 | 125 |
| Msa0481800 | AT4G38740.1 | 48.000 | 150 | 65 | 5 | 19 | 157 | 18 | 165 | 1.83e-36 | 124 |
| Msa0481800 | AT3G56070.1 | 50.360 | 139 | 57 | 3 | 19 | 146 | 18 | 155 | 2.68e-36 | 124 |
| Msa0481800 | AT3G56070.2 | 50.360 | 139 | 57 | 3 | 19 | 146 | 18 | 155 | 2.68e-36 | 124 |
| Msa0481800 | AT1G53720.1 | 40.994 | 161 | 87 | 3 | 12 | 164 | 3 | 163 | 2.80e-36 | 131 |
| Msa0481800 | AT2G15790.1 | 47.020 | 151 | 67 | 4 | 19 | 157 | 18 | 167 | 4.64e-36 | 128 |
| Msa0481800 | AT3G63400.2 | 45.181 | 166 | 72 | 5 | 10 | 158 | 7 | 170 | 1.54e-35 | 127 |
| Msa0481800 | AT2G29960.1 | 48.889 | 135 | 57 | 4 | 17 | 140 | 44 | 177 | 3.86e-35 | 122 |
| Msa0481800 | AT2G29960.3 | 48.889 | 135 | 57 | 4 | 17 | 140 | 44 | 177 | 3.86e-35 | 122 |
| Msa0481800 | AT4G34870.1 | 47.586 | 145 | 60 | 4 | 16 | 147 | 15 | 156 | 4.83e-35 | 120 |
| Msa0481800 | AT2G38730.1 | 46.012 | 163 | 72 | 6 | 10 | 157 | 32 | 193 | 6.02e-35 | 121 |
| Msa0481800 | AT2G16600.1 | 48.344 | 151 | 60 | 6 | 17 | 152 | 17 | 164 | 7.67e-35 | 120 |
| Msa0481800 | AT3G55920.1 | 44.444 | 153 | 72 | 4 | 19 | 160 | 73 | 223 | 2.36e-34 | 120 |
| Msa0481800 | AT3G63400.3 | 45.181 | 166 | 72 | 5 | 10 | 158 | 7 | 170 | 3.13e-34 | 126 |
| Msa0481800 | AT3G63400.4 | 45.181 | 166 | 72 | 5 | 10 | 158 | 7 | 170 | 3.13e-34 | 126 |
| Msa0481800 | AT3G63400.1 | 45.181 | 166 | 72 | 5 | 10 | 158 | 7 | 170 | 3.13e-34 | 126 |
| Msa0481800 | AT5G58710.1 | 47.407 | 135 | 59 | 3 | 17 | 140 | 47 | 180 | 4.84e-33 | 116 |
| Msa0481800 | AT2G29960.2 | 44.444 | 135 | 53 | 5 | 17 | 140 | 44 | 167 | 1.23e-27 | 102 |
| Msa0481800 | AT2G16600.2 | 45.070 | 142 | 56 | 5 | 17 | 152 | 17 | 142 | 5.11e-27 | 99.8 |
| Msa0481800 | AT4G34960.1 | 40.310 | 129 | 65 | 4 | 18 | 135 | 60 | 187 | 3.84e-25 | 96.7 |
| Msa0481800 | AT2G47320.1 | 30.000 | 150 | 101 | 2 | 13 | 162 | 81 | 226 | 3.13e-19 | 81.3 |
| Msa0481800 | AT4G34960.2 | 41.121 | 107 | 51 | 3 | 18 | 113 | 60 | 165 | 4.03e-19 | 79.7 |
| Msa0481800 | AT4G32420.1 | 35.465 | 172 | 92 | 6 | 5 | 159 | 2 | 171 | 2.73e-18 | 81.3 |
| Msa0481800 | AT4G32420.5 | 35.465 | 172 | 92 | 6 | 5 | 159 | 2 | 171 | 2.73e-18 | 81.3 |
| Msa0481800 | AT4G32420.3 | 35.465 | 172 | 92 | 6 | 5 | 159 | 2 | 171 | 2.73e-18 | 81.3 |
| Msa0481800 | AT4G32420.6 | 35.465 | 172 | 92 | 6 | 5 | 159 | 2 | 171 | 2.73e-18 | 81.3 |
| Msa0481800 | AT4G32420.4 | 34.911 | 169 | 91 | 6 | 5 | 156 | 2 | 168 | 1.96e-16 | 76.3 |
| Msa0481800 | AT3G66654.4 | 28.261 | 138 | 98 | 1 | 14 | 151 | 85 | 221 | 5.23e-16 | 73.2 |
| Msa0481800 | AT3G66654.2 | 28.261 | 138 | 98 | 1 | 14 | 151 | 85 | 221 | 5.23e-16 | 73.2 |
| Msa0481800 | AT3G66654.3 | 28.261 | 138 | 98 | 1 | 14 | 151 | 85 | 221 | 5.23e-16 | 73.2 |
| Msa0481800 | AT3G66654.1 | 28.261 | 138 | 98 | 1 | 14 | 151 | 85 | 221 | 5.23e-16 | 73.2 |
| Msa0481800 | AT3G66654.5 | 28.261 | 138 | 98 | 1 | 14 | 151 | 85 | 221 | 5.23e-16 | 73.2 |
| Msa0481800 | AT1G53780.2 | 41.667 | 84 | 48 | 1 | 80 | 162 | 4 | 87 | 1.06e-15 | 73.9 |
| Msa0481800 | AT1G26940.1 | 30.952 | 168 | 105 | 5 | 6 | 164 | 28 | 193 | 4.75e-13 | 64.7 |
| Msa0481800 | AT1G26940.2 | 30.247 | 162 | 102 | 5 | 12 | 164 | 3 | 162 | 9.31e-12 | 60.8 |
Find 70 sgRNAs with CRISPR-Local
Find 214 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGAAAGACATAAATTTATT+TGG | 0.107913 | 3_3:-88176750 | None:intergenic |
| AACTGACTTCCGTTAGTATT+AGG | 0.209355 | 3_3:-88174745 | None:intergenic |
| TCTCGCACCGTGCCCCTCTT+TGG | 0.259093 | 3_3:+88174777 | Msa0481800:CDS |
| ATGAAGTTCCTACAAGTTCT+AGG | 0.269440 | 3_3:-88174075 | None:intergenic |
| ACTGACTTCCGTTAGTATTA+GGG | 0.308819 | 3_3:-88174744 | None:intergenic |
| ACCTGTCATTGTTATCTGTT+TGG | 0.338632 | 3_3:-88175659 | None:intergenic |
| ATGTTTATGACCTATCGTTT+TGG | 0.344336 | 3_3:+88176710 | Msa0481800:three_prime_UTR |
| AGAGGAGGAGAATCCATCTA+TGG | 0.352009 | 3_3:+88174286 | Msa0481800:CDS |
| CCAGGAAAACACACAATATT+CGG | 0.372270 | 3_3:+88175591 | Msa0481800:intron |
| ATGCACCACCACCGCTCTAA+TGG | 0.390345 | 3_3:+88176842 | Msa0481800:three_prime_UTR |
| TAGTTCGAACATCGACATAT+TGG | 0.394275 | 3_3:-88176913 | None:intergenic |
| AGTTAAAGCATACCCATAGA+TGG | 0.430770 | 3_3:-88174299 | None:intergenic |
| ACATAAATTTATTTGGAACT+TGG | 0.432020 | 3_3:-88176743 | None:intergenic |
| TAGCCGATCAAATTGTAATC+AGG | 0.450564 | 3_3:+88176939 | Msa0481800:three_prime_UTR |
| AATATTCGGAAGAGTAAGTC+GGG | 0.456454 | 3_3:+88175605 | Msa0481800:CDS |
| GGTGGGGATCCCACTGGGAC+AGG | 0.457978 | 3_3:+88174262 | Msa0481800:CDS |
| GATCCCACTGGGACAGGAAG+AGG | 0.463282 | 3_3:+88174268 | Msa0481800:CDS |
| AAGCGCAGAAGGTGGTGCTC+CGG | 0.493778 | 3_3:+88173900 | Msa0481800:CDS |
| TGGTGGTTCGAGATGTTTGT+TGG | 0.501946 | 3_3:-88176982 | None:intergenic |
| CTGTCATGCACGATTGACAT+AGG | 0.502222 | 3_3:+88176782 | Msa0481800:three_prime_UTR |
| CTGCACCATTAGAGCGGTGG+TGG | 0.508784 | 3_3:-88176847 | None:intergenic |
| GAGCTGAAGCACACTGGAGC+TGG | 0.513405 | 3_3:+88174697 | Msa0481800:CDS |
| CCTCCTCTTCCTGTCCCAGT+GGG | 0.517919 | 3_3:-88174271 | None:intergenic |
| CAACCTGATTACAATTTGAT+CGG | 0.533113 | 3_3:-88176942 | None:intergenic |
| GATAAATTACCATCCAAAGA+GGG | 0.534312 | 3_3:-88174790 | None:intergenic |
| GCACCGTGCCCCTCTTTGGA+TGG | 0.536332 | 3_3:+88174781 | Msa0481800:CDS |
| CGCAGAAGGTGGTGCTCCGG+AGG | 0.537673 | 3_3:+88173903 | Msa0481800:CDS |
| CGGAAGAGTAAGTCGGGGAA+TGG | 0.538120 | 3_3:+88175611 | Msa0481800:CDS |
| AAAATGTGGGCAAGCGCAGA+AGG | 0.539071 | 3_3:+88173889 | Msa0481800:exon |
| GAGTAGGATTTCATAGTACA+AGG | 0.541774 | 3_3:+88174241 | Msa0481800:intron |
| ATCGCTGACATAGTTACGAC+TGG | 0.547963 | 3_3:+88176597 | Msa0481800:three_prime_UTR |
| AGGATTTCATAGTACAAGGT+GGG | 0.556519 | 3_3:+88174245 | Msa0481800:intron |
| TCCGTAGTATCTTCACATCA+TGG | 0.557400 | 3_3:-88176511 | None:intergenic |
| TTGGTTCATGCATCAGAGGA+TGG | 0.560824 | 3_3:-88176894 | None:intergenic |
| TCCAAACAGATAACAATGAC+AGG | 0.562883 | 3_3:+88175658 | Msa0481800:CDS |
| TCCTCCTCTTCCTGTCCCAG+TGG | 0.564512 | 3_3:-88174272 | None:intergenic |
| AATAATAATAATTACCTCGA+CGG | 0.570411 | 3_3:-88173956 | None:intergenic |
| TACAAGGTGGGGATCCCACT+GGG | 0.581439 | 3_3:+88174257 | Msa0481800:CDS |
| GGTTACTCTAGAAACTTCCA+TGG | 0.582783 | 3_3:+88173924 | Msa0481800:CDS |
| TAGTATCTTCACATCATGGA+CGG | 0.585917 | 3_3:-88176507 | None:intergenic |
| GTACAAGGTGGGGATCCCAC+TGG | 0.586480 | 3_3:+88174256 | Msa0481800:CDS |
| AGTATCTTCACATCATGGAC+GGG | 0.587817 | 3_3:-88176506 | None:intergenic |
| AGCATGCACCTAGAACTTGT+AGG | 0.588442 | 3_3:+88174067 | Msa0481800:CDS |
| AAACAAGAGCTGAAGCACAC+TGG | 0.591406 | 3_3:+88174691 | Msa0481800:CDS |
| TCCATGATGTGAAGATACTA+CGG | 0.592850 | 3_3:+88176510 | Msa0481800:CDS |
| CATATTGGTTCATGCATCAG+AGG | 0.596734 | 3_3:-88176898 | None:intergenic |
| GAGGAGGAGAATCCATCTAT+GGG | 0.597355 | 3_3:+88174287 | Msa0481800:CDS |
| CAATATTCGGAAGAGTAAGT+CGG | 0.597820 | 3_3:+88175604 | Msa0481800:CDS |
| TAAGTTCCACAGAATCATCA+AGG | 0.601613 | 3_3:+88174131 | Msa0481800:CDS |
| AGATAAATTACCATCCAAAG+AGG | 0.606617 | 3_3:-88174791 | None:intergenic |
| ATGGAAATCATCAAAAGACT+TGG | 0.607942 | 3_3:+88175630 | Msa0481800:CDS |
| GAAGTTTCTAGAGTAACCTC+CGG | 0.610654 | 3_3:-88173919 | None:intergenic |
| AAGTACAGTTCCAAAACGAT+AGG | 0.613096 | 3_3:-88176720 | None:intergenic |
| CCCACTGGGACAGGAAGAGG+AGG | 0.622286 | 3_3:+88174271 | Msa0481800:CDS |
| CTCGACGGTGAATGAACCCA+TGG | 0.626061 | 3_3:-88173941 | None:intergenic |
| GGATTTCATAGTACAAGGTG+GGG | 0.626995 | 3_3:+88174246 | Msa0481800:intron |
| TTCATTGAACTATCTCGTAG+AGG | 0.631851 | 3_3:+88174093 | Msa0481800:CDS |
| TGAATACCTTGATGATTCTG+TGG | 0.644502 | 3_3:-88174137 | None:intergenic |
| AATGCTGGCCCTAATACTAA+CGG | 0.646655 | 3_3:+88174736 | Msa0481800:CDS |
| TAGGATTTCATAGTACAAGG+TGG | 0.656984 | 3_3:+88174244 | Msa0481800:intron |
| GATACTACGGACATCAGTCA+AGG | 0.657156 | 3_3:+88176523 | Msa0481800:CDS |
| ATGTGGGCAAGCGCAGAAGG+TGG | 0.657684 | 3_3:+88173892 | Msa0481800:CDS |
| CATGGGTTCATTCACCGTCG+AGG | 0.657749 | 3_3:+88173942 | Msa0481800:CDS |
| GTTACTCTAGAAACTTCCAT+GGG | 0.658204 | 3_3:+88173925 | Msa0481800:CDS |
| TTACCATCCAAAGAGGGGCA+CGG | 0.666255 | 3_3:-88174784 | None:intergenic |
| ATAAATTACCATCCAAAGAG+GGG | 0.671498 | 3_3:-88174789 | None:intergenic |
| TGAAGTCTGCACCATTAGAG+CGG | 0.675093 | 3_3:-88176853 | None:intergenic |
| AAAACGATAGGTCATAAACA+TGG | 0.677534 | 3_3:-88176708 | None:intergenic |
| AGTCTGCACCATTAGAGCGG+TGG | 0.686654 | 3_3:-88176850 | None:intergenic |
| ATATTCGGAAGAGTAAGTCG+GGG | 0.743686 | 3_3:+88175606 | Msa0481800:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTGTCTTAAAAATTAGA+TGG | + | chr3_3:88174184-88174203 | Msa0481800:intron | 15.0% |
| !! | TTATATATAGTATCTGTAAA+TGG | - | chr3_3:88175707-88175726 | None:intergenic | 15.0% |
| !!! | GGTCTAAAATTTAAAAATAT+AGG | + | chr3_3:88175930-88175949 | Msa0481800:intron | 15.0% |
| !!! | TTTTAACTATCATGTTATAA+GGG | + | chr3_3:88176321-88176340 | Msa0481800:intron | 15.0% |
| !! | AATAATAATAATTACCTCGA+CGG | - | chr3_3:88173959-88173978 | None:intergenic | 20.0% |
| !! | TATGTTAATTGTGTTTGTAA+TGG | + | chr3_3:88174331-88174350 | Msa0481800:intron | 20.0% |
| !!! | TAATGGTGTTATCATAATAT+GGG | + | chr3_3:88174348-88174367 | Msa0481800:intron | 20.0% |
| !! | AAATGAAGTTGTTTATTCAA+AGG | + | chr3_3:88174578-88174597 | Msa0481800:intron | 20.0% |
| !! | AATGAAGTTGTTTATTCAAA+GGG | + | chr3_3:88174579-88174598 | Msa0481800:intron | 20.0% |
| !! | AATTTCCAAAGTAAAATAGA+AGG | - | chr3_3:88174824-88174843 | None:intergenic | 20.0% |
| !! | TGGAAATTATTAATACATGT+TGG | + | chr3_3:88174836-88174855 | Msa0481800:intron | 20.0% |
| !! | TTAAATAAGCTCTACTTATA+TGG | - | chr3_3:88174931-88174950 | None:intergenic | 20.0% |
| !! | AAAAATGTAAAGATAAAACG+AGG | - | chr3_3:88175072-88175091 | None:intergenic | 20.0% |
| !! | ATGATTAAATAGCAATATAG+AGG | - | chr3_3:88175158-88175177 | None:intergenic | 20.0% |
| !! | AATAAACATATATGCCAAAA+CGG | + | chr3_3:88175321-88175340 | Msa0481800:intron | 20.0% |
| !!! | AATTCATATAGTGAAACTTT+TGG | + | chr3_3:88175537-88175556 | Msa0481800:intron | 20.0% |
| !! | ATCATAAAATTGCTAGTATT+GGG | + | chr3_3:88175776-88175795 | Msa0481800:intron | 20.0% |
| !!! | TATATGATACTGATAATGTT+GGG | + | chr3_3:88175799-88175818 | Msa0481800:intron | 20.0% |
| !! | TTTAAAAATATAGGATCAGA+AGG | + | chr3_3:88175939-88175958 | Msa0481800:intron | 20.0% |
| !! | TACATTTAAATAAAACACGT+TGG | + | chr3_3:88175989-88176008 | Msa0481800:intron | 20.0% |
| !! | TTAAAACTAGCGTATAATAA+GGG | - | chr3_3:88176307-88176326 | None:intergenic | 20.0% |
| !!! | GTTTTAACTATCATGTTATA+AGG | + | chr3_3:88176320-88176339 | Msa0481800:intron | 20.0% |
| !!! | CAAATATGTCAATTTTTTCA+AGG | - | chr3_3:88176465-88176484 | None:intergenic | 20.0% |
| !!! | AGCATAAAAATTGTAACTTT+TGG | + | chr3_3:88176653-88176672 | Msa0481800:three_prime_UTR | 20.0% |
| !!! | ACATAAATTTATTTGGAACT+TGG | - | chr3_3:88176746-88176765 | None:intergenic | 20.0% |
| !! | CTGAAAGACATAAATTTATT+TGG | - | chr3_3:88176753-88176772 | None:intergenic | 20.0% |
| ! | AATAACGAACAATGAAAATG+TGG | - | chr3_3:88174167-88174186 | None:intergenic | 25.0% |
| !!! | GTAATGGTGTTATCATAATA+TGG | + | chr3_3:88174347-88174366 | Msa0481800:intron | 25.0% |
| !! | ACATGTTCATAAACTGTTTT+CGG | + | chr3_3:88174432-88174451 | Msa0481800:intron | 25.0% |
| ! | ATGAAGTTGTTTATTCAAAG+GGG | + | chr3_3:88174580-88174599 | Msa0481800:intron | 25.0% |
| !! | TTCTTCCTTCTATTTTACTT+TGG | + | chr3_3:88174816-88174835 | Msa0481800:intron | 25.0% |
| !!! | TAGATGATTTGGTGATTATA+TGG | - | chr3_3:88175128-88175147 | None:intergenic | 25.0% |
| !!! | GAGGATTTTTTTAGATGATT+TGG | - | chr3_3:88175139-88175158 | None:intergenic | 25.0% |
| ! | TCATTATGTAATGTAATCTG+AGG | + | chr3_3:88175174-88175193 | Msa0481800:intron | 25.0% |
| ! | TGCTTATAGTAATATGAATG+TGG | + | chr3_3:88175228-88175247 | Msa0481800:intron | 25.0% |
| !!! | AAGTGTCATTAAACTGTTTT+AGG | - | chr3_3:88175743-88175762 | None:intergenic | 25.0% |
| ! | TTAATGACACTTTGTGATAT+TGG | + | chr3_3:88175751-88175770 | Msa0481800:intron | 25.0% |
| ! | TAATGACACTTTGTGATATT+GGG | + | chr3_3:88175752-88175771 | Msa0481800:intron | 25.0% |
| ! | GATCATAAAATTGCTAGTAT+TGG | + | chr3_3:88175775-88175794 | Msa0481800:intron | 25.0% |
| !! | GTATATGATACTGATAATGT+TGG | + | chr3_3:88175798-88175817 | Msa0481800:intron | 25.0% |
| !! | TCAATTACAAGCAAAGTTTT+TGG | + | chr3_3:88175885-88175904 | Msa0481800:intron | 25.0% |
| !! | CAATTACAAGCAAAGTTTTT+GGG | + | chr3_3:88175886-88175905 | Msa0481800:intron | 25.0% |
| ! | ATGTAAATTGAATATGCACA+AGG | - | chr3_3:88175974-88175993 | None:intergenic | 25.0% |
| !!! | AACTACTTTTTGTTCCATTT+TGG | - | chr3_3:88176183-88176202 | None:intergenic | 25.0% |
| ! | AATGGAACAAAAAGTAGTTA+TGG | + | chr3_3:88176184-88176203 | Msa0481800:intron | 25.0% |
| ! | ATGGAACAAAAAGTAGTTAT+GGG | + | chr3_3:88176185-88176204 | Msa0481800:intron | 25.0% |
| ! | GTTAAAACTAGCGTATAATA+AGG | - | chr3_3:88176308-88176327 | None:intergenic | 25.0% |
| ! | TTTCATAAAATTCCATTTCC+TGG | - | chr3_3:88176353-88176372 | None:intergenic | 25.0% |
| ! | CCAAGAAAAAAAGTTCATAA+AGG | - | chr3_3:88176423-88176442 | None:intergenic | 25.0% |
| !!! | CCTTTATGAACTTTTTTTCT+TGG | + | chr3_3:88176420-88176439 | Msa0481800:intron | 25.0% |
| !!! | TGTTCTATTTCTACTTATTC+AGG | + | chr3_3:88176483-88176502 | Msa0481800:intron | 25.0% |
| !!! | TGTGTTTTGAGAGAAAAATG+TGG | + | chr3_3:88173875-88173894 | Msa0481800:exon | 30.0% |
| !!! | GTGTTTTGAGAGAAAAATGT+GGG | + | chr3_3:88173876-88173895 | Msa0481800:exon | 30.0% |
| TTAAACCCTGATACAGAATT+AGG | + | chr3_3:88174001-88174020 | Msa0481800:intron | 30.0% | |
| TAAACCCTGATACAGAATTA+GGG | + | chr3_3:88174002-88174021 | Msa0481800:intron | 30.0% | |
| AAAACCCTAATTCTGTATCA+GGG | - | chr3_3:88174009-88174028 | None:intergenic | 30.0% | |
| TAAAACCCTAATTCTGTATC+AGG | - | chr3_3:88174010-88174029 | None:intergenic | 30.0% | |
| !! | GTTCTTTACATTGGTTTATG+TGG | + | chr3_3:88174211-88174230 | Msa0481800:intron | 30.0% |
| !!! | TTTATGTGGTTTTGTTGAGT+AGG | + | chr3_3:88174225-88174244 | Msa0481800:intron | 30.0% |
| TATCATAATATGGGTCTGTT+TGG | + | chr3_3:88174357-88174376 | Msa0481800:intron | 30.0% | |
| ATCAACTGACATAAACTGTT+TGG | + | chr3_3:88174398-88174417 | Msa0481800:intron | 30.0% | |
| TCAACTGACATAAACTGTTT+GGG | + | chr3_3:88174399-88174418 | Msa0481800:intron | 30.0% | |
| ! | CATTTTTGTATAAGCTGTCT+TGG | - | chr3_3:88174476-88174495 | None:intergenic | 30.0% |
| TGAAGTTGTTTATTCAAAGG+GGG | + | chr3_3:88174581-88174600 | Msa0481800:intron | 30.0% | |
| !! | TTTAGCCACTTTGTTGTTTA+TGG | + | chr3_3:88174643-88174662 | Msa0481800:intron | 30.0% |
| ! | ATTTTATCAATGGCTAATGC+TGG | + | chr3_3:88174721-88174740 | Msa0481800:CDS | 30.0% |
| ATAAATTACCATCCAAAGAG+GGG | - | chr3_3:88174792-88174811 | None:intergenic | 30.0% | |
| GATAAATTACCATCCAAAGA+GGG | - | chr3_3:88174793-88174812 | None:intergenic | 30.0% | |
| AGATAAATTACCATCCAAAG+AGG | - | chr3_3:88174794-88174813 | None:intergenic | 30.0% | |
| CCAAACAAAAATCATCAACA+AGG | - | chr3_3:88174863-88174882 | None:intergenic | 30.0% | |
| !!! | CCTTGTTGATGATTTTTGTT+TGG | + | chr3_3:88174860-88174879 | Msa0481800:intron | 30.0% |
| CCAAAAACAAACCAATAGTT+GGG | - | chr3_3:88174966-88174985 | None:intergenic | 30.0% | |
| TCCAAAAACAAACCAATAGT+TGG | - | chr3_3:88174967-88174986 | None:intergenic | 30.0% | |
| AAATTTGAACCCAATAAGCA+TGG | - | chr3_3:88174997-88175016 | None:intergenic | 30.0% | |
| ! | GTTTCATTGACTAAATCTGT+AGG | + | chr3_3:88175372-88175391 | Msa0481800:intron | 30.0% |
| TGTAGGAATGCAAAAAACAA+GGG | + | chr3_3:88175389-88175408 | Msa0481800:intron | 30.0% | |
| TCGTAGTAAGTAACAATTGT+AGG | - | chr3_3:88175453-88175472 | None:intergenic | 30.0% | |
| ATCATCTGATGCTAATGTTA+TGG | - | chr3_3:88175507-88175526 | None:intergenic | 30.0% | |
| ATGGAAATCATCAAAAGACT+TGG | + | chr3_3:88175630-88175649 | Msa0481800:CDS | 30.0% | |
| AATGACACTTTGTGATATTG+GGG | + | chr3_3:88175753-88175772 | Msa0481800:intron | 30.0% | |
| AAATAAAACACGTTGGATCT+AGG | + | chr3_3:88175996-88176015 | Msa0481800:intron | 30.0% | |
| ATCTAGGTTTGGATATATAG+TGG | + | chr3_3:88176012-88176031 | Msa0481800:intron | 30.0% | |
| TTGGATATATAGTGGCTAAT+TGG | + | chr3_3:88176020-88176039 | Msa0481800:intron | 30.0% | |
| TGGATATATAGTGGCTAATT+GGG | + | chr3_3:88176021-88176040 | Msa0481800:intron | 30.0% | |
| ! | AAAACCGAGATTTTGTGTAA+AGG | + | chr3_3:88176104-88176123 | Msa0481800:intron | 30.0% |
| GATGCCACAAAATAAGTTAA+AGG | + | chr3_3:88176216-88176235 | Msa0481800:intron | 30.0% | |
| !!! | TGGTCCTTTAACTTATTTTG+TGG | - | chr3_3:88176223-88176242 | None:intergenic | 30.0% |
| AAAGGACCAAATGTATGATT+TGG | + | chr3_3:88176234-88176253 | Msa0481800:intron | 30.0% | |
| AAGGACCAAATGTATGATTT+GGG | + | chr3_3:88176235-88176254 | Msa0481800:intron | 30.0% | |
| GAAAAATGTCATGGCATATT+TGG | + | chr3_3:88176619-88176638 | Msa0481800:three_prime_UTR | 30.0% | |
| !!! | GGTTTTTAGTTTTCATTGTG+TGG | - | chr3_3:88176690-88176709 | None:intergenic | 30.0% |
| AAAACGATAGGTCATAAACA+TGG | - | chr3_3:88176711-88176730 | None:intergenic | 30.0% | |
| ! | ATGTTTATGACCTATCGTTT+TGG | + | chr3_3:88176710-88176729 | Msa0481800:three_prime_UTR | 30.0% |
| CAACCTGATTACAATTTGAT+CGG | - | chr3_3:88176945-88176964 | None:intergenic | 30.0% | |
| ! | GTTACTCTAGAAACTTCCAT+GGG | + | chr3_3:88173925-88173944 | Msa0481800:CDS | 35.0% |
| ATGAAGTTCCTACAAGTTCT+AGG | - | chr3_3:88174078-88174097 | None:intergenic | 35.0% | |
| TTCATTGAACTATCTCGTAG+AGG | + | chr3_3:88174093-88174112 | Msa0481800:CDS | 35.0% | |
| TAAGTTCCACAGAATCATCA+AGG | + | chr3_3:88174131-88174150 | Msa0481800:CDS | 35.0% | |
| ! | TGAATACCTTGATGATTCTG+TGG | - | chr3_3:88174140-88174159 | None:intergenic | 35.0% |
| !! | GATGGTGTTGTTCTTTACAT+TGG | + | chr3_3:88174202-88174221 | Msa0481800:intron | 35.0% |
| GAGTAGGATTTCATAGTACA+AGG | + | chr3_3:88174241-88174260 | Msa0481800:intron | 35.0% | |
| TAGGATTTCATAGTACAAGG+TGG | + | chr3_3:88174244-88174263 | Msa0481800:intron | 35.0% | |
| AGGATTTCATAGTACAAGGT+GGG | + | chr3_3:88174245-88174264 | Msa0481800:intron | 35.0% | |
| AGTTAAAGCATACCCATAGA+TGG | - | chr3_3:88174302-88174321 | None:intergenic | 35.0% | |
| TAATATGGGTCTGTTTGGAT+CGG | + | chr3_3:88174362-88174381 | Msa0481800:intron | 35.0% | |
| CAACTGACATAAACTGTTTG+GGG | + | chr3_3:88174400-88174419 | Msa0481800:intron | 35.0% | |
| AACTGACATAAACTGTTTGG+GGG | + | chr3_3:88174401-88174420 | Msa0481800:intron | 35.0% | |
| TAAGTCACCCAAAAAAACCT+AGG | - | chr3_3:88174607-88174626 | None:intergenic | 35.0% | |
| ! | TGGAGCTGGTATTTTATCAA+TGG | + | chr3_3:88174711-88174730 | Msa0481800:CDS | 35.0% |
| ! | ACTGACTTCCGTTAGTATTA+GGG | - | chr3_3:88174747-88174766 | None:intergenic | 35.0% |
| ! | AACTGACTTCCGTTAGTATT+AGG | - | chr3_3:88174748-88174767 | None:intergenic | 35.0% |
| !! | TGATAAGAGTACCCAACTAT+TGG | + | chr3_3:88174952-88174971 | Msa0481800:intron | 35.0% |
| !!! | CCCAACTATTGGTTTGTTTT+TGG | + | chr3_3:88174963-88174982 | Msa0481800:intron | 35.0% |
| GGCAAACACAATAGATAATC+AGG | + | chr3_3:88175205-88175224 | Msa0481800:intron | 35.0% | |
| TGAATGTGGATGATTATCTC+TGG | + | chr3_3:88175242-88175261 | Msa0481800:intron | 35.0% | |
| GAATGTGGATGATTATCTCT+GGG | + | chr3_3:88175243-88175262 | Msa0481800:intron | 35.0% | |
| CTGTAGGAATGCAAAAAACA+AGG | + | chr3_3:88175388-88175407 | Msa0481800:intron | 35.0% | |
| ACTCAATTTCTGTTTCAACC+AGG | + | chr3_3:88175573-88175592 | Msa0481800:intron | 35.0% | |
| CCAGGAAAACACACAATATT+CGG | + | chr3_3:88175591-88175610 | Msa0481800:intron | 35.0% | |
| CAATATTCGGAAGAGTAAGT+CGG | + | chr3_3:88175604-88175623 | Msa0481800:CDS | 35.0% | |
| AATATTCGGAAGAGTAAGTC+GGG | + | chr3_3:88175605-88175624 | Msa0481800:CDS | 35.0% | |
| TCCAAACAGATAACAATGAC+AGG | + | chr3_3:88175658-88175677 | Msa0481800:CDS | 35.0% | |
| ACCTGTCATTGTTATCTGTT+TGG | - | chr3_3:88175662-88175681 | None:intergenic | 35.0% | |
| !! | ACTGTTTTAGGCAAGATTGT+TGG | - | chr3_3:88175731-88175750 | None:intergenic | 35.0% |
| GAATATTGTAACAGTGCATG+AGG | - | chr3_3:88175867-88175886 | None:intergenic | 35.0% | |
| ! | AATTTTAGACCTCGACAGAT+AGG | - | chr3_3:88175921-88175940 | None:intergenic | 35.0% |
| !! | AGTAGTTGATTTGGGTTAGA+AGG | + | chr3_3:88176079-88176098 | Msa0481800:intron | 35.0% |
| !! | GTAGTTGATTTGGGTTAGAA+GGG | + | chr3_3:88176080-88176099 | Msa0481800:intron | 35.0% |
| !! | TAGTTGATTTGGGTTAGAAG+GGG | + | chr3_3:88176081-88176100 | Msa0481800:intron | 35.0% |
| !!! | CTTATTTTGTGGCATCACTT+TGG | - | chr3_3:88176212-88176231 | None:intergenic | 35.0% |
| CAAAGCCCAAATCATACATT+TGG | - | chr3_3:88176243-88176262 | None:intergenic | 35.0% | |
| ! | AATAAGGGTGGTAAAGTGTT+GGG | - | chr3_3:88176292-88176311 | None:intergenic | 35.0% |
| TAATAAGGGTGGTAAAGTGT+TGG | - | chr3_3:88176293-88176312 | None:intergenic | 35.0% | |
| AAACTAGCGTATAATAAGGG+TGG | - | chr3_3:88176304-88176323 | None:intergenic | 35.0% | |
| TAGTATCTTCACATCATGGA+CGG | - | chr3_3:88176510-88176529 | None:intergenic | 35.0% | |
| TCCATGATGTGAAGATACTA+CGG | + | chr3_3:88176510-88176529 | Msa0481800:CDS | 35.0% | |
| TTACGACTGGAAAAATGTCA+TGG | + | chr3_3:88176610-88176629 | Msa0481800:three_prime_UTR | 35.0% | |
| ! | TGTAACTTTTGGCACTAGAT+TGG | + | chr3_3:88176664-88176683 | Msa0481800:three_prime_UTR | 35.0% |
| AAGTACAGTTCCAAAACGAT+AGG | - | chr3_3:88176723-88176742 | None:intergenic | 35.0% | |
| TAGTTCGAACATCGACATAT+TGG | - | chr3_3:88176916-88176935 | None:intergenic | 35.0% | |
| TAGCCGATCAAATTGTAATC+AGG | + | chr3_3:88176939-88176958 | Msa0481800:three_prime_UTR | 35.0% | |
| !! | GAAGTTTCTAGAGTAACCTC+CGG | - | chr3_3:88173922-88173941 | None:intergenic | 40.0% |
| ! | GGTTACTCTAGAAACTTCCA+TGG | + | chr3_3:88173924-88173943 | Msa0481800:CDS | 40.0% |
| GGATTTCATAGTACAAGGTG+GGG | + | chr3_3:88174246-88174265 | Msa0481800:intron | 40.0% | |
| CACTGCCATAAACAACAAAG+TGG | - | chr3_3:88174651-88174670 | None:intergenic | 40.0% | |
| AATGCTGGCCCTAATACTAA+CGG | + | chr3_3:88174736-88174755 | Msa0481800:CDS | 40.0% | |
| GACAATGCACCATGCTTATT+GGG | + | chr3_3:88174985-88175004 | Msa0481800:intron | 40.0% | |
| ! | ATGTAATCTGAGGTCACTGA+TGG | + | chr3_3:88175184-88175203 | Msa0481800:intron | 40.0% |
| ! | CAGCTGTCTAATATCCGTTT+TGG | - | chr3_3:88175338-88175357 | None:intergenic | 40.0% |
| ! | CCGAATATTGTGTGTTTTCC+TGG | - | chr3_3:88175594-88175613 | None:intergenic | 40.0% |
| ATATTCGGAAGAGTAAGTCG+GGG | + | chr3_3:88175606-88175625 | Msa0481800:CDS | 40.0% | |
| ! | TCAGATGACCAACATTTTCG+AGG | - | chr3_3:88175828-88175847 | None:intergenic | 40.0% |
| TCGAAAATGTTGGTCATCTG+AGG | + | chr3_3:88175827-88175846 | Msa0481800:intron | 40.0% | |
| AAACACGTTGGATCTAGGTT+TGG | + | chr3_3:88176001-88176020 | Msa0481800:intron | 40.0% | |
| GTCGCCTTTACACAAAATCT+CGG | - | chr3_3:88176111-88176130 | None:intergenic | 40.0% | |
| TTTGTGTAAAGGCGACAGAT+TGG | + | chr3_3:88176115-88176134 | Msa0481800:intron | 40.0% | |
| TGACCAACTGAGGTAAAGTT+AGG | + | chr3_3:88176154-88176173 | Msa0481800:intron | 40.0% | |
| GACCAACTGAGGTAAAGTTA+GGG | + | chr3_3:88176155-88176174 | Msa0481800:intron | 40.0% | |
| ACCAACTGAGGTAAAGTTAG+GGG | + | chr3_3:88176156-88176175 | Msa0481800:intron | 40.0% | |
| GTAAAGTTAGGGGACCAAAA+TGG | + | chr3_3:88176166-88176185 | Msa0481800:intron | 40.0% | |
| !! | ATGTTATAAGGGTGTCTTCC+AGG | + | chr3_3:88176332-88176351 | Msa0481800:intron | 40.0% |
| AGTATCTTCACATCATGGAC+GGG | - | chr3_3:88176509-88176528 | None:intergenic | 40.0% | |
| TCCGTAGTATCTTCACATCA+TGG | - | chr3_3:88176514-88176533 | None:intergenic | 40.0% | |
| !! | CATATTGGTTCATGCATCAG+AGG | - | chr3_3:88176901-88176920 | None:intergenic | 40.0% |
| AGCATGCACCTAGAACTTGT+AGG | + | chr3_3:88174067-88174086 | Msa0481800:CDS | 45.0% | |
| AGAGGAGGAGAATCCATCTA+TGG | + | chr3_3:88174286-88174305 | Msa0481800:CDS | 45.0% | |
| GAGGAGGAGAATCCATCTAT+GGG | + | chr3_3:88174287-88174306 | Msa0481800:CDS | 45.0% | |
| TGTTTATTCAAAGGGGGCCT+AGG | + | chr3_3:88174587-88174606 | Msa0481800:intron | 45.0% | |
| !!! | AAAGGGGGCCTAGGTTTTTT+TGG | + | chr3_3:88174596-88174615 | Msa0481800:intron | 45.0% |
| !!! | AAGGGGGCCTAGGTTTTTTT+GGG | + | chr3_3:88174597-88174616 | Msa0481800:intron | 45.0% |
| AAACAAGAGCTGAAGCACAC+TGG | + | chr3_3:88174691-88174710 | Msa0481800:CDS | 45.0% | |
| ! | CACTGTGTTACTCACTTGCA+TGG | + | chr3_3:88174883-88174902 | Msa0481800:intron | 45.0% |
| TGTTACTCACTTGCATGGTG+AGG | + | chr3_3:88174888-88174907 | Msa0481800:intron | 45.0% | |
| GGACAATGCACCATGCTTAT+TGG | + | chr3_3:88174984-88175003 | Msa0481800:intron | 45.0% | |
| TTGGGTGTCCTCGAAAATGT+TGG | + | chr3_3:88175817-88175836 | Msa0481800:intron | 45.0% | |
| TCCACGCTGAGTAGTTGATT+TGG | + | chr3_3:88176070-88176089 | Msa0481800:intron | 45.0% | |
| ! | CCACGCTGAGTAGTTGATTT+GGG | + | chr3_3:88176071-88176090 | Msa0481800:intron | 45.0% |
| TGTAAAGGCGACAGATTGGA+CGG | + | chr3_3:88176119-88176138 | Msa0481800:intron | 45.0% | |
| TCCCCTAACTTTACCTCAGT+TGG | - | chr3_3:88176160-88176179 | None:intergenic | 45.0% | |
| !! | TAAGGGTGTCTTCCAGGAAA+TGG | + | chr3_3:88176338-88176357 | Msa0481800:intron | 45.0% |
| GATACTACGGACATCAGTCA+AGG | + | chr3_3:88176523-88176542 | Msa0481800:CDS | 45.0% | |
| ATCGCTGACATAGTTACGAC+TGG | + | chr3_3:88176597-88176616 | Msa0481800:three_prime_UTR | 45.0% | |
| CTGTCATGCACGATTGACAT+AGG | + | chr3_3:88176782-88176801 | Msa0481800:three_prime_UTR | 45.0% | |
| TGAAGTCTGCACCATTAGAG+CGG | - | chr3_3:88176856-88176875 | None:intergenic | 45.0% | |
| TTGGTTCATGCATCAGAGGA+TGG | - | chr3_3:88176897-88176916 | None:intergenic | 45.0% | |
| !!! | TTTAACATTTTTTTTTTTTT+TGG | + | chr3_3:88174026-88174045 | Msa0481800:intron | 5.0% |
| !!! | TTAACATTTTTTTTTTTTTT+GGG | + | chr3_3:88174027-88174046 | Msa0481800:intron | 5.0% |
| GAGAGAGAGAGAGAGAGTGA+AGG | + | chr3_3:88173839-88173858 | Msa0481800:five_prime_UTR | 50.0% | |
| AAAATGTGGGCAAGCGCAGA+AGG | + | chr3_3:88173889-88173908 | Msa0481800:exon | 50.0% | |
| TTACCATCCAAAGAGGGGCA+CGG | - | chr3_3:88174787-88174806 | None:intergenic | 50.0% | |
| CAACGAAAGCCTATCTGTCG+AGG | + | chr3_3:88175909-88175928 | Msa0481800:intron | 50.0% | |
| CCCAAATCAACTACTCAGCG+TGG | - | chr3_3:88176074-88176093 | None:intergenic | 50.0% | |
| AGGGCTAACTTGACCAACTG+AGG | + | chr3_3:88176144-88176163 | Msa0481800:intron | 50.0% | |
| CTCGACGGTGAATGAACCCA+TGG | - | chr3_3:88173944-88173963 | None:intergenic | 55.0% | |
| CATGGGTTCATTCACCGTCG+AGG | + | chr3_3:88173942-88173961 | Msa0481800:CDS | 55.0% | |
| TACAAGGTGGGGATCCCACT+GGG | + | chr3_3:88174257-88174276 | Msa0481800:CDS | 55.0% | |
| CGGAAGAGTAAGTCGGGGAA+TGG | + | chr3_3:88175611-88175630 | Msa0481800:CDS | 55.0% | |
| AGGCGACAGATTGGACGGAA+AGG | + | chr3_3:88176124-88176143 | Msa0481800:intron | 55.0% | |
| GGCGACAGATTGGACGGAAA+GGG | + | chr3_3:88176125-88176144 | Msa0481800:intron | 55.0% | |
| ATGCACCACCACCGCTCTAA+TGG | + | chr3_3:88176842-88176861 | Msa0481800:three_prime_UTR | 55.0% | |
| AGTCTGCACCATTAGAGCGG+TGG | - | chr3_3:88176853-88176872 | None:intergenic | 55.0% | |
| ATGTGGGCAAGCGCAGAAGG+TGG | + | chr3_3:88173892-88173911 | Msa0481800:CDS | 60.0% | |
| AAGCGCAGAAGGTGGTGCTC+CGG | + | chr3_3:88173900-88173919 | Msa0481800:CDS | 60.0% | |
| GTACAAGGTGGGGATCCCAC+TGG | + | chr3_3:88174256-88174275 | Msa0481800:CDS | 60.0% | |
| GATCCCACTGGGACAGGAAG+AGG | + | chr3_3:88174268-88174287 | Msa0481800:CDS | 60.0% | |
| CCTCCTCTTCCTGTCCCAGT+GGG | - | chr3_3:88174274-88174293 | None:intergenic | 60.0% | |
| TCCTCCTCTTCCTGTCCCAG+TGG | - | chr3_3:88174275-88174294 | None:intergenic | 60.0% | |
| GAGCTGAAGCACACTGGAGC+TGG | + | chr3_3:88174697-88174716 | Msa0481800:CDS | 60.0% | |
| CTGCACCATTAGAGCGGTGG+TGG | - | chr3_3:88176850-88176869 | None:intergenic | 60.0% | |
| CCCACTGGGACAGGAAGAGG+AGG | + | chr3_3:88174271-88174290 | Msa0481800:CDS | 65.0% | |
| TCTCGCACCGTGCCCCTCTT+TGG | + | chr3_3:88174777-88174796 | Msa0481800:CDS | 65.0% | |
| GCACCGTGCCCCTCTTTGGA+TGG | + | chr3_3:88174781-88174800 | Msa0481800:CDS | 65.0% | |
| CGCAGAAGGTGGTGCTCCGG+AGG | + | chr3_3:88173903-88173922 | Msa0481800:CDS | 70.0% | |
| GGTGGGGATCCCACTGGGAC+AGG | + | chr3_3:88174262-88174281 | Msa0481800:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 88173831 | 88176993 | 88173831 | ID=Msa0481800;Name=Msa0481800 |
| chr3_3 | mRNA | 88173831 | 88176993 | 88173831 | ID=Msa0481800-mRNA-1;Parent=Msa0481800;Name=Msa0481800-mRNA-1;_AED=0.06;_eAED=0.06;_QI=61|1|1|1|0.8|0.83|6|443|164 |
| chr3_3 | exon | 88173831 | 88173963 | 88173831 | ID=Msa0481800-mRNA-1:exon:25608;Parent=Msa0481800-mRNA-1 |
| chr3_3 | exon | 88174057 | 88174152 | 88174057 | ID=Msa0481800-mRNA-1:exon:25609;Parent=Msa0481800-mRNA-1 |
| chr3_3 | exon | 88174247 | 88174308 | 88174247 | ID=Msa0481800-mRNA-1:exon:25610;Parent=Msa0481800-mRNA-1 |
| chr3_3 | exon | 88174669 | 88174802 | 88174669 | ID=Msa0481800-mRNA-1:exon:25611;Parent=Msa0481800-mRNA-1 |
| chr3_3 | exon | 88175595 | 88175679 | 88175595 | ID=Msa0481800-mRNA-1:exon:25612;Parent=Msa0481800-mRNA-1 |
| chr3_3 | exon | 88176505 | 88176993 | 88176505 | ID=Msa0481800-mRNA-1:exon:25613;Parent=Msa0481800-mRNA-1 |
| chr3_3 | five_prime_UTR | 88173831 | 88173891 | 88173831 | ID=Msa0481800-mRNA-1:five_prime_utr;Parent=Msa0481800-mRNA-1 |
| chr3_3 | CDS | 88173892 | 88173963 | 88173892 | ID=Msa0481800-mRNA-1:cds;Parent=Msa0481800-mRNA-1 |
| chr3_3 | CDS | 88174057 | 88174152 | 88174057 | ID=Msa0481800-mRNA-1:cds;Parent=Msa0481800-mRNA-1 |
| chr3_3 | CDS | 88174247 | 88174308 | 88174247 | ID=Msa0481800-mRNA-1:cds;Parent=Msa0481800-mRNA-1 |
| chr3_3 | CDS | 88174669 | 88174802 | 88174669 | ID=Msa0481800-mRNA-1:cds;Parent=Msa0481800-mRNA-1 |
| chr3_3 | CDS | 88175595 | 88175679 | 88175595 | ID=Msa0481800-mRNA-1:cds;Parent=Msa0481800-mRNA-1 |
| chr3_3 | CDS | 88176505 | 88176550 | 88176505 | ID=Msa0481800-mRNA-1:cds;Parent=Msa0481800-mRNA-1 |
| chr3_3 | three_prime_UTR | 88176551 | 88176993 | 88176551 | ID=Msa0481800-mRNA-1:three_prime_utr;Parent=Msa0481800-mRNA-1 |
| Gene Sequence |
| Protein sequence |
