AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1080390

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1080390 MtrunA17_Chr7g0266721 98.780 164 2 0 1 164 1 164 1.55e-121 339
Msa1080390 MtrunA17_Chr8g0351571 50.331 151 75 0 12 162 3 153 2.26e-53 166
Msa1080390 MtrunA17_Chr2g0321111 52.597 154 72 1 10 162 461 614 1.75e-52 176
Msa1080390 MtrunA17_Chr5g0401141 52.055 146 70 0 12 157 347 492 1.46e-49 167
Msa1080390 MtrunA17_Chr2g0288371 53.247 154 70 2 11 162 14 167 5.05e-43 149
Msa1080390 MtrunA17_Chr1g0193711 50.336 149 68 5 17 160 97 244 4.46e-40 135
Msa1080390 MtrunA17_Chr1g0213971 49.306 144 68 4 18 157 93 235 1.02e-39 134
Msa1080390 MtrunA17_Chr7g0270991 50.000 146 68 4 17 158 108 252 2.18e-39 134
Msa1080390 MtrunA17_Chr4g0045321 48.684 152 65 4 19 158 18 168 4.13e-38 133
Msa1080390 MtrunA17_Chr6g0484281 42.138 159 84 2 12 162 3 161 5.09e-37 134
Msa1080390 MtrunA17_Chr8g0353571 47.552 143 64 4 19 151 32 173 5.65e-37 125
Msa1080390 MtrunA17_Chr7g0274841 47.973 148 65 4 19 155 18 164 9.14e-37 124
Msa1080390 MtrunA17_Chr8g0374621 44.242 165 74 5 10 157 4 167 1.32e-36 129
Msa1080390 MtrunA17_Chr8g0357591 41.509 159 85 2 12 162 3 161 1.30e-35 130
Msa1080390 MtrunA17_Chr3g0145501 51.079 139 52 5 18 143 25 160 4.71e-35 120
Msa1080390 MtrunA17_Chr4g0038431 48.684 152 57 6 10 143 4 152 9.09e-35 119
Msa1080390 MtrunA17_Chr3g0104751 49.624 133 55 4 19 140 48 179 1.07e-34 120
Msa1080390 MtrunA17_Chr7g0260441 47.297 148 64 5 23 158 25 170 5.47e-34 125
Msa1080390 MtrunA17_Chr3g0113441 48.889 135 57 4 17 140 76 209 3.94e-33 117
Msa1080390 MtrunA17_Chr4g0037281 40.945 127 63 3 22 137 64 189 2.61e-26 99.4
Msa1080390 MtrunA17_Chr1g0199071 33.113 151 95 2 13 163 83 227 2.38e-23 92.0
Msa1080390 MtrunA17_Chr3g0138061 38.286 175 89 6 1 158 1 173 5.14e-21 89.0
Msa1080390 MtrunA17_Chr1g0163031 30.263 152 99 3 13 163 82 227 1.09e-19 82.4
Msa1080390 MtrunA17_Chr1g0149061 42.424 132 62 4 24 143 26 155 4.55e-19 83.2
Msa1080390 MtrunA17_Chr3g0122871 46.875 64 34 0 88 151 56 119 1.36e-13 63.5
Msa1080390 MtrunA17_Chr5g0416441 31.544 149 84 5 8 145 24 165 9.38e-13 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1080390 AT2G36130.1 86.585 164 22 0 1 164 1 164 3.06e-106 301
Msa1080390 AT1G01940.1 50.331 151 75 0 12 162 3 153 3.80e-53 166
Msa1080390 AT3G44600.1 52.500 160 75 1 4 162 469 628 7.84e-53 177
Msa1080390 AT5G67530.1 49.669 151 76 0 12 162 346 496 1.99e-49 167
Msa1080390 AT4G33060.1 50.968 155 73 3 11 162 14 168 4.50e-44 152
Msa1080390 AT3G62030.3 51.748 143 64 3 19 157 108 249 1.97e-38 132
Msa1080390 AT3G62030.1 51.748 143 64 3 19 157 109 250 2.06e-38 132
Msa1080390 AT1G53720.2 40.994 161 87 3 12 164 3 163 6.50e-38 133
Msa1080390 AT3G62030.2 51.748 143 64 3 19 157 162 303 8.02e-38 132
Msa1080390 AT5G13120.2 48.252 143 69 4 19 157 103 244 1.32e-37 129
Msa1080390 AT5G13120.1 48.252 143 69 4 19 157 107 248 1.61e-37 129
Msa1080390 AT2G21130.1 46.914 162 66 6 7 157 14 166 8.75e-37 125
Msa1080390 AT4G38740.1 48.000 150 65 5 19 157 18 165 1.83e-36 124
Msa1080390 AT3G56070.1 50.360 139 57 3 19 146 18 155 2.68e-36 124
Msa1080390 AT3G56070.2 50.360 139 57 3 19 146 18 155 2.68e-36 124
Msa1080390 AT1G53720.1 40.994 161 87 3 12 164 3 163 2.80e-36 131
Msa1080390 AT2G15790.1 47.020 151 67 4 19 157 18 167 4.64e-36 128
Msa1080390 AT3G63400.2 45.181 166 72 5 10 158 7 170 1.54e-35 127
Msa1080390 AT2G29960.1 48.889 135 57 4 17 140 44 177 3.86e-35 122
Msa1080390 AT2G29960.3 48.889 135 57 4 17 140 44 177 3.86e-35 122
Msa1080390 AT4G34870.1 47.586 145 60 4 16 147 15 156 4.83e-35 120
Msa1080390 AT2G38730.1 46.012 163 72 6 10 157 32 193 6.02e-35 121
Msa1080390 AT2G16600.1 48.344 151 60 6 17 152 17 164 7.67e-35 120
Msa1080390 AT3G55920.1 44.444 153 72 4 19 160 73 223 2.36e-34 120
Msa1080390 AT3G63400.3 45.181 166 72 5 10 158 7 170 3.13e-34 126
Msa1080390 AT3G63400.4 45.181 166 72 5 10 158 7 170 3.13e-34 126
Msa1080390 AT3G63400.1 45.181 166 72 5 10 158 7 170 3.13e-34 126
Msa1080390 AT5G58710.1 47.407 135 59 3 17 140 47 180 4.84e-33 116
Msa1080390 AT2G29960.2 44.444 135 53 5 17 140 44 167 1.23e-27 102
Msa1080390 AT2G16600.2 45.070 142 56 5 17 152 17 142 5.11e-27 99.8
Msa1080390 AT4G34960.1 40.310 129 65 4 18 135 60 187 3.84e-25 96.7
Msa1080390 AT2G47320.1 30.000 150 101 2 13 162 81 226 3.13e-19 81.3
Msa1080390 AT4G34960.2 41.121 107 51 3 18 113 60 165 4.03e-19 79.7
Msa1080390 AT4G32420.1 35.465 172 92 6 5 159 2 171 2.73e-18 81.3
Msa1080390 AT4G32420.5 35.465 172 92 6 5 159 2 171 2.73e-18 81.3
Msa1080390 AT4G32420.3 35.465 172 92 6 5 159 2 171 2.73e-18 81.3
Msa1080390 AT4G32420.6 35.465 172 92 6 5 159 2 171 2.73e-18 81.3
Msa1080390 AT4G32420.4 34.911 169 91 6 5 156 2 168 1.96e-16 76.3
Msa1080390 AT3G66654.4 28.261 138 98 1 14 151 85 221 5.23e-16 73.2
Msa1080390 AT3G66654.2 28.261 138 98 1 14 151 85 221 5.23e-16 73.2
Msa1080390 AT3G66654.3 28.261 138 98 1 14 151 85 221 5.23e-16 73.2
Msa1080390 AT3G66654.1 28.261 138 98 1 14 151 85 221 5.23e-16 73.2
Msa1080390 AT3G66654.5 28.261 138 98 1 14 151 85 221 5.23e-16 73.2
Msa1080390 AT1G53780.2 41.667 84 48 1 80 162 4 87 1.06e-15 73.9
Msa1080390 AT1G26940.1 30.952 168 105 5 6 164 28 193 4.75e-13 64.7
Msa1080390 AT1G26940.2 30.247 162 102 5 12 164 3 162 9.31e-12 60.8

Find 70 sgRNAs with CRISPR-Local

Find 214 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGAAAGACATAAATTTATT+TGG 0.107913 7_2:+79846116 None:intergenic
AACTGACTTCCGTTAGTATT+AGG 0.209355 7_2:+79848121 None:intergenic
TCTCGCACCGTGCCCCTCTT+TGG 0.259093 7_2:-79848089 Msa1080390:CDS
ATGAAGTTCCTACAAGTTCT+AGG 0.269440 7_2:+79848790 None:intergenic
ACTGACTTCCGTTAGTATTA+GGG 0.308819 7_2:+79848122 None:intergenic
ACCTGTCATTGTTATCTGTT+TGG 0.338632 7_2:+79847207 None:intergenic
ATGTTTATGACCTATCGTTT+TGG 0.344336 7_2:-79846156 Msa1080390:three_prime_UTR
AGAGGAGGAGAATCCATCTA+TGG 0.352009 7_2:-79848580 Msa1080390:CDS
GAGTTCGAACATTGACATAT+TGG 0.365544 7_2:+79845953 None:intergenic
CCAGGAAAACACACAATATT+CGG 0.372270 7_2:-79847275 Msa1080390:intron
ATTACAATTTGATCGGCTAT+AGG 0.374218 7_2:+79845931 None:intergenic
ATGCACCACCACCGCTCTAA+TGG 0.390345 7_2:-79846024 Msa1080390:three_prime_UTR
AGTTAAAGCATACCCATAGA+TGG 0.430770 7_2:+79848567 None:intergenic
ACATAAATTTATTTGGAACT+TGG 0.432020 7_2:+79846123 None:intergenic
AATATTCGGAAGAGTAAGTC+GGG 0.456454 7_2:-79847261 Msa1080390:CDS
GGTGGGGATCCCACTGGGAC+AGG 0.457978 7_2:-79848604 Msa1080390:CDS
GATCCCACTGGGACAGGAAG+AGG 0.463282 7_2:-79848598 Msa1080390:CDS
AAGCGCAGAAGGTGGTGCTC+CGG 0.493778 7_2:-79848966 Msa1080390:CDS
TGGTGGTTCGAGATGTTTGT+TGG 0.501946 7_2:+79845884 None:intergenic
CTGTCATGCACGATTGACAT+AGG 0.502222 7_2:-79846084 Msa1080390:three_prime_UTR
CTGCACCATTAGAGCGGTGG+TGG 0.508784 7_2:+79846019 None:intergenic
GAGCTGAAGCACACTGGAGC+TGG 0.513405 7_2:-79848169 Msa1080390:CDS
CCTCCTCTTCCTGTCCCAGT+GGG 0.517919 7_2:+79848595 None:intergenic
GATAAATTACCATCCAAAGA+GGG 0.534312 7_2:+79848076 None:intergenic
GCACCGTGCCCCTCTTTGGA+TGG 0.536332 7_2:-79848085 Msa1080390:intron
CGCAGAAGGTGGTGCTCCGG+AGG 0.537673 7_2:-79848963 Msa1080390:CDS
CGGAAGAGTAAGTCGGGGAA+TGG 0.538120 7_2:-79847255 Msa1080390:CDS
AAAATGTGGGCAAGCGCAGA+AGG 0.539071 7_2:-79848977 Msa1080390:CDS
GAGTAGGATTTCATAGTACA+AGG 0.541774 7_2:-79848625 Msa1080390:intron
ATCGCTGACATAGTTACGAC+TGG 0.547963 7_2:-79846269 Msa1080390:three_prime_UTR
CAAACTGATTACAATTTGAT+CGG 0.548189 7_2:+79845924 None:intergenic
CATATTGGTTCATGCATCAG+AGG 0.556273 7_2:+79845968 None:intergenic
AGGATTTCATAGTACAAGGT+GGG 0.556519 7_2:-79848621 Msa1080390:CDS
TCCGTAGTATCTTCACATCA+TGG 0.557400 7_2:+79846355 None:intergenic
TTGGTTCATGCATCAGAGGA+TGG 0.560824 7_2:+79845972 None:intergenic
TCCAAACAGATAACAATGAC+AGG 0.562883 7_2:-79847208 Msa1080390:intron
TCCTCCTCTTCCTGTCCCAG+TGG 0.564512 7_2:+79848594 None:intergenic
AATAATAATAATTACCTCGA+CGG 0.570411 7_2:+79848910 None:intergenic
TACAAGGTGGGGATCCCACT+GGG 0.581439 7_2:-79848609 Msa1080390:CDS
GGTTACTCTAGAAACTTCCA+TGG 0.582783 7_2:-79848942 Msa1080390:CDS
TAGTATCTTCACATCATGGA+CGG 0.585917 7_2:+79846359 None:intergenic
GTACAAGGTGGGGATCCCAC+TGG 0.586480 7_2:-79848610 Msa1080390:CDS
AGTATCTTCACATCATGGAC+GGG 0.587817 7_2:+79846360 None:intergenic
AGCATGCACCTAGAACTTGT+AGG 0.588442 7_2:-79848798 Msa1080390:CDS
AAACAAGAGCTGAAGCACAC+TGG 0.591406 7_2:-79848175 Msa1080390:CDS
TCCATGATGTGAAGATACTA+CGG 0.592850 7_2:-79846356 Msa1080390:CDS
GAGGAGGAGAATCCATCTAT+GGG 0.597355 7_2:-79848579 Msa1080390:intron
CAATATTCGGAAGAGTAAGT+CGG 0.597820 7_2:-79847262 Msa1080390:CDS
TAAGTTCCACAGAATCATCA+AGG 0.601613 7_2:-79848734 Msa1080390:intron
AGATAAATTACCATCCAAAG+AGG 0.606617 7_2:+79848075 None:intergenic
ATGGAAATCATCAAAAGACT+TGG 0.607942 7_2:-79847236 Msa1080390:CDS
GAAGTTTCTAGAGTAACCTC+CGG 0.610654 7_2:+79848947 None:intergenic
AAGTACAGTTCCAAAACGAT+AGG 0.613096 7_2:+79846146 None:intergenic
CCCACTGGGACAGGAAGAGG+AGG 0.622286 7_2:-79848595 Msa1080390:CDS
CTCGACGGTGAATGAACCCA+TGG 0.626061 7_2:+79848925 None:intergenic
GGATTTCATAGTACAAGGTG+GGG 0.626995 7_2:-79848620 Msa1080390:CDS
TTCATTGAACTATCTCGTAG+AGG 0.631851 7_2:-79848772 Msa1080390:CDS
TGAATACCTTGATGATTCTG+TGG 0.644502 7_2:+79848728 None:intergenic
AATGCTGGCCCTAATACTAA+CGG 0.646655 7_2:-79848130 Msa1080390:CDS
TAGGATTTCATAGTACAAGG+TGG 0.656984 7_2:-79848622 Msa1080390:CDS
GATACTACGGACATCAGTCA+AGG 0.657156 7_2:-79846343 Msa1080390:CDS
ATGTGGGCAAGCGCAGAAGG+TGG 0.657684 7_2:-79848974 Msa1080390:CDS
CATGGGTTCATTCACCGTCG+AGG 0.657749 7_2:-79848924 Msa1080390:intron
GTTACTCTAGAAACTTCCAT+GGG 0.658204 7_2:-79848941 Msa1080390:CDS
TTACCATCCAAAGAGGGGCA+CGG 0.666255 7_2:+79848082 None:intergenic
ATAAATTACCATCCAAAGAG+GGG 0.671498 7_2:+79848077 None:intergenic
TGAAGTCTGCACCATTAGAG+CGG 0.675093 7_2:+79846013 None:intergenic
AAAACGATAGGTCATAAACA+TGG 0.677534 7_2:+79846158 None:intergenic
AGTCTGCACCATTAGAGCGG+TGG 0.686654 7_2:+79846016 None:intergenic
ATATTCGGAAGAGTAAGTCG+GGG 0.743686 7_2:-79847260 Msa1080390:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTGTCTTAAAAATTAGA+TGG - chr7_2:79846242-79846261 Msa1080390:three_prime_UTR 15.0%
!! TTATATATAGTATCTGTAAA+TGG + chr7_2:79847764-79847783 None:intergenic 15.0%
!!! GGTCTAAAATTTAAAAATAT+AGG - chr7_2:79847987-79848006 Msa1080390:intron 15.0%
!!! TTTTAACTATCATGTTATAA+GGG - chr7_2:79848378-79848397 Msa1080390:intron 15.0%
!! AATAATAATAATTACCTCGA+CGG + chr7_2:79846016-79846035 None:intergenic 20.0%
!! TATGTTAATTGTGTTTGTAA+TGG - chr7_2:79846388-79846407 Msa1080390:intron 20.0%
!!! TAATGGTGTTATCATAATAT+GGG - chr7_2:79846405-79846424 Msa1080390:intron 20.0%
!! AAATGAAGTTGTTTATTCAA+AGG - chr7_2:79846635-79846654 Msa1080390:intron 20.0%
!! AATGAAGTTGTTTATTCAAA+GGG - chr7_2:79846636-79846655 Msa1080390:intron 20.0%
!! AATTTCCAAAGTAAAATAGA+AGG + chr7_2:79846881-79846900 None:intergenic 20.0%
!! TGGAAATTATTAATACATGT+TGG - chr7_2:79846893-79846912 Msa1080390:intron 20.0%
!! TTAAATAAGCTCTACTTATA+TGG + chr7_2:79846988-79847007 None:intergenic 20.0%
!! AAAAATGTAAAGATAAAACG+AGG + chr7_2:79847129-79847148 None:intergenic 20.0%
!! ATGATTAAATAGCAATATAG+AGG + chr7_2:79847215-79847234 None:intergenic 20.0%
!! AATAAACATATATGCCAAAA+CGG - chr7_2:79847378-79847397 Msa1080390:intron 20.0%
!!! AATTCATATAGTGAAACTTT+TGG - chr7_2:79847594-79847613 Msa1080390:intron 20.0%
!! ATCATAAAATTGCTAGTATT+GGG - chr7_2:79847833-79847852 Msa1080390:intron 20.0%
!!! TATATGATACTGATAATGTT+GGG - chr7_2:79847856-79847875 Msa1080390:intron 20.0%
!! TTTAAAAATATAGGATCAGA+AGG - chr7_2:79847996-79848015 Msa1080390:intron 20.0%
!! TACATTTAAATAAAACACGT+TGG - chr7_2:79848046-79848065 Msa1080390:intron 20.0%
!! TTAAAACTAGCGTATAATAA+GGG + chr7_2:79848364-79848383 None:intergenic 20.0%
!!! GTTTTAACTATCATGTTATA+AGG - chr7_2:79848377-79848396 Msa1080390:intron 20.0%
!!! CAAATATGTCAATTTTTTCA+AGG + chr7_2:79848522-79848541 None:intergenic 20.0%
!!! AGCATAAAAATTGTAACTTT+TGG - chr7_2:79848710-79848729 Msa1080390:intron 20.0%
!!! ACATAAATTTATTTGGAACT+TGG + chr7_2:79848803-79848822 None:intergenic 20.0%
!! CTGAAAGACATAAATTTATT+TGG + chr7_2:79848810-79848829 None:intergenic 20.0%
! AATAACGAACAATGAAAATG+TGG + chr7_2:79846225-79846244 None:intergenic 25.0%
!!! GTAATGGTGTTATCATAATA+TGG - chr7_2:79846404-79846423 Msa1080390:intron 25.0%
!! ACATGTTCATAAACTGTTTT+CGG - chr7_2:79846489-79846508 Msa1080390:intron 25.0%
! ATGAAGTTGTTTATTCAAAG+GGG - chr7_2:79846637-79846656 Msa1080390:intron 25.0%
!! TTCTTCCTTCTATTTTACTT+TGG - chr7_2:79846873-79846892 Msa1080390:intron 25.0%
!!! TAGATGATTTGGTGATTATA+TGG + chr7_2:79847185-79847204 None:intergenic 25.0%
!!! GAGGATTTTTTTAGATGATT+TGG + chr7_2:79847196-79847215 None:intergenic 25.0%
! TCATTATGTAATGTAATCTG+AGG - chr7_2:79847231-79847250 Msa1080390:CDS 25.0%
! TGCTTATAGTAATATGAATG+TGG - chr7_2:79847285-79847304 Msa1080390:intron 25.0%
! TTGTAGTAAGTAACAATTGT+AGG + chr7_2:79847510-79847529 None:intergenic 25.0%
!!! AAGTGTCATTAAACTGTTTT+AGG + chr7_2:79847800-79847819 None:intergenic 25.0%
! TTAATGACACTTTGTGATAT+TGG - chr7_2:79847808-79847827 Msa1080390:intron 25.0%
! TAATGACACTTTGTGATATT+GGG - chr7_2:79847809-79847828 Msa1080390:intron 25.0%
! GATCATAAAATTGCTAGTAT+TGG - chr7_2:79847832-79847851 Msa1080390:intron 25.0%
!! GTATATGATACTGATAATGT+TGG - chr7_2:79847855-79847874 Msa1080390:intron 25.0%
!! TCAATTACAAGCAAAGTTTT+TGG - chr7_2:79847942-79847961 Msa1080390:intron 25.0%
!! CAATTACAAGCAAAGTTTTT+GGG - chr7_2:79847943-79847962 Msa1080390:intron 25.0%
! ATGTAAATTGAATATGCACA+AGG + chr7_2:79848031-79848050 None:intergenic 25.0%
!!! AACTACTTTTTGTTCCATTT+TGG + chr7_2:79848240-79848259 None:intergenic 25.0%
! AATGGAACAAAAAGTAGTTA+TGG - chr7_2:79848241-79848260 Msa1080390:intron 25.0%
! ATGGAACAAAAAGTAGTTAT+GGG - chr7_2:79848242-79848261 Msa1080390:intron 25.0%
! GTTAAAACTAGCGTATAATA+AGG + chr7_2:79848365-79848384 None:intergenic 25.0%
! TTTCATAAAATTCCATTTCC+TGG + chr7_2:79848410-79848429 None:intergenic 25.0%
! CCAAGAAAAAAAGTTCATAA+AGG + chr7_2:79848480-79848499 None:intergenic 25.0%
!!! CCTTTATGAACTTTTTTTCT+TGG - chr7_2:79848477-79848496 Msa1080390:intron 25.0%
!!! TGTTCTATTTCTACTTATTC+AGG - chr7_2:79848540-79848559 Msa1080390:intron 25.0%
! CAAACTGATTACAATTTGAT+CGG + chr7_2:79849002-79849021 None:intergenic 25.0%
!!! TGTGTTTTGAGAGAAAAATG+TGG - chr7_2:79845932-79845951 Msa1080390:three_prime_UTR 30.0%
!!! GTGTTTTGAGAGAAAAATGT+GGG - chr7_2:79845933-79845952 Msa1080390:three_prime_UTR 30.0%
TTAAACCCTGATACAGAATT+AGG - chr7_2:79846057-79846076 Msa1080390:three_prime_UTR 30.0%
TAAACCCTGATACAGAATTA+GGG - chr7_2:79846058-79846077 Msa1080390:three_prime_UTR 30.0%
AAAACCCTAATTCTGTATCA+GGG + chr7_2:79846065-79846084 None:intergenic 30.0%
TAAAACCCTAATTCTGTATC+AGG + chr7_2:79846066-79846085 None:intergenic 30.0%
!! GTTCTTTACATTGGTTTATG+TGG - chr7_2:79846269-79846288 Msa1080390:three_prime_UTR 30.0%
TATCATAATATGGGTCTGTT+TGG - chr7_2:79846414-79846433 Msa1080390:intron 30.0%
ATCAACTGACATAAACTGTT+TGG - chr7_2:79846455-79846474 Msa1080390:intron 30.0%
TCAACTGACATAAACTGTTT+GGG - chr7_2:79846456-79846475 Msa1080390:intron 30.0%
! CATTTTTGTATAAGCTGTCT+TGG + chr7_2:79846533-79846552 None:intergenic 30.0%
TGAAGTTGTTTATTCAAAGG+GGG - chr7_2:79846638-79846657 Msa1080390:intron 30.0%
!! TTTAGCCACTTTGTTGTTTA+TGG - chr7_2:79846700-79846719 Msa1080390:intron 30.0%
! ATTTTATCAATGGCTAATGC+TGG - chr7_2:79846778-79846797 Msa1080390:intron 30.0%
ATAAATTACCATCCAAAGAG+GGG + chr7_2:79846849-79846868 None:intergenic 30.0%
GATAAATTACCATCCAAAGA+GGG + chr7_2:79846850-79846869 None:intergenic 30.0%
AGATAAATTACCATCCAAAG+AGG + chr7_2:79846851-79846870 None:intergenic 30.0%
CCAAACAAAAATCATCAACA+AGG + chr7_2:79846920-79846939 None:intergenic 30.0%
!!! CCTTGTTGATGATTTTTGTT+TGG - chr7_2:79846917-79846936 Msa1080390:intron 30.0%
CCAAAAACAAACCAATAGTT+GGG + chr7_2:79847023-79847042 None:intergenic 30.0%
TCCAAAAACAAACCAATAGT+TGG + chr7_2:79847024-79847043 None:intergenic 30.0%
AAATTTGAACCCAATAAGCA+TGG + chr7_2:79847054-79847073 None:intergenic 30.0%
! GTTTCATTGACTAAATCTGT+AGG - chr7_2:79847429-79847448 Msa1080390:intron 30.0%
TGTAGGAATGCAAAAAACAA+GGG - chr7_2:79847446-79847465 Msa1080390:intron 30.0%
ATCATCTGATGCTAATGTTA+TGG + chr7_2:79847564-79847583 None:intergenic 30.0%
ATGGAAATCATCAAAAGACT+TGG - chr7_2:79847687-79847706 Msa1080390:intron 30.0%
AATGACACTTTGTGATATTG+GGG - chr7_2:79847810-79847829 Msa1080390:intron 30.0%
AAATAAAACACGTTGGATCT+AGG - chr7_2:79848053-79848072 Msa1080390:intron 30.0%
ATCTAGGTTTGGATATATAG+TGG - chr7_2:79848069-79848088 Msa1080390:intron 30.0%
TTGGATATATAGTGGCTAAT+TGG - chr7_2:79848077-79848096 Msa1080390:intron 30.0%
TGGATATATAGTGGCTAATT+GGG - chr7_2:79848078-79848097 Msa1080390:intron 30.0%
! AAAACCGAGATTTTGTGTAA+AGG - chr7_2:79848161-79848180 Msa1080390:CDS 30.0%
GATGCCACAAAATAAGTTAA+AGG - chr7_2:79848273-79848292 Msa1080390:intron 30.0%
!!! TGGTCCTTTAACTTATTTTG+TGG + chr7_2:79848280-79848299 None:intergenic 30.0%
AAAGGACCAAATGTATGATT+TGG - chr7_2:79848291-79848310 Msa1080390:intron 30.0%
AAGGACCAAATGTATGATTT+GGG - chr7_2:79848292-79848311 Msa1080390:intron 30.0%
GAAAAATGTCATGGCATATT+TGG - chr7_2:79848676-79848695 Msa1080390:intron 30.0%
!!! GGTTTTTAGTTTTCATTGTG+TGG + chr7_2:79848747-79848766 None:intergenic 30.0%
AAAACGATAGGTCATAAACA+TGG + chr7_2:79848768-79848787 None:intergenic 30.0%
! ATGTTTATGACCTATCGTTT+TGG - chr7_2:79848767-79848786 Msa1080390:CDS 30.0%
ATTACAATTTGATCGGCTAT+AGG + chr7_2:79848995-79849014 None:intergenic 30.0%
! GTTACTCTAGAAACTTCCAT+GGG - chr7_2:79845982-79846001 Msa1080390:three_prime_UTR 35.0%
ATGAAGTTCCTACAAGTTCT+AGG + chr7_2:79846136-79846155 None:intergenic 35.0%
TTCATTGAACTATCTCGTAG+AGG - chr7_2:79846151-79846170 Msa1080390:three_prime_UTR 35.0%
TAAGTTCCACAGAATCATCA+AGG - chr7_2:79846189-79846208 Msa1080390:three_prime_UTR 35.0%
! TGAATACCTTGATGATTCTG+TGG + chr7_2:79846198-79846217 None:intergenic 35.0%
!! GATGGTGTTGTTCTTTACAT+TGG - chr7_2:79846260-79846279 Msa1080390:three_prime_UTR 35.0%
!! GTTTATGTGGTTTGTTGAGT+AGG - chr7_2:79846282-79846301 Msa1080390:three_prime_UTR 35.0%
GAGTAGGATTTCATAGTACA+AGG - chr7_2:79846298-79846317 Msa1080390:three_prime_UTR 35.0%
TAGGATTTCATAGTACAAGG+TGG - chr7_2:79846301-79846320 Msa1080390:three_prime_UTR 35.0%
AGGATTTCATAGTACAAGGT+GGG - chr7_2:79846302-79846321 Msa1080390:three_prime_UTR 35.0%
AGTTAAAGCATACCCATAGA+TGG + chr7_2:79846359-79846378 None:intergenic 35.0%
TAATATGGGTCTGTTTGGAT+CGG - chr7_2:79846419-79846438 Msa1080390:intron 35.0%
CAACTGACATAAACTGTTTG+GGG - chr7_2:79846457-79846476 Msa1080390:intron 35.0%
AACTGACATAAACTGTTTGG+GGG - chr7_2:79846458-79846477 Msa1080390:intron 35.0%
TAAGTCACCCAAAAAAACCT+AGG + chr7_2:79846664-79846683 None:intergenic 35.0%
! TGGAGCTGGTATTTTATCAA+TGG - chr7_2:79846768-79846787 Msa1080390:intron 35.0%
! ACTGACTTCCGTTAGTATTA+GGG + chr7_2:79846804-79846823 None:intergenic 35.0%
! AACTGACTTCCGTTAGTATT+AGG + chr7_2:79846805-79846824 None:intergenic 35.0%
!! TGATAAGAGTACCCAACTAT+TGG - chr7_2:79847009-79847028 Msa1080390:intron 35.0%
!!! CCCAACTATTGGTTTGTTTT+TGG - chr7_2:79847020-79847039 Msa1080390:intron 35.0%
GAAAATGCACCATGCTTATT+GGG - chr7_2:79847042-79847061 Msa1080390:intron 35.0%
GGCAAACACAATAGATAATC+AGG - chr7_2:79847262-79847281 Msa1080390:CDS 35.0%
TGAATGTGGATGATTATCTC+TGG - chr7_2:79847299-79847318 Msa1080390:intron 35.0%
GAATGTGGATGATTATCTCT+GGG - chr7_2:79847300-79847319 Msa1080390:intron 35.0%
CTGTAGGAATGCAAAAAACA+AGG - chr7_2:79847445-79847464 Msa1080390:intron 35.0%
ACTCAATTTCTGTTTCAACC+AGG - chr7_2:79847630-79847649 Msa1080390:intron 35.0%
CCAGGAAAACACACAATATT+CGG - chr7_2:79847648-79847667 Msa1080390:intron 35.0%
CAATATTCGGAAGAGTAAGT+CGG - chr7_2:79847661-79847680 Msa1080390:intron 35.0%
AATATTCGGAAGAGTAAGTC+GGG - chr7_2:79847662-79847681 Msa1080390:intron 35.0%
TCCAAACAGATAACAATGAC+AGG - chr7_2:79847715-79847734 Msa1080390:intron 35.0%
ACCTGTCATTGTTATCTGTT+TGG + chr7_2:79847719-79847738 None:intergenic 35.0%
!! ACTGTTTTAGGCAAGATTGT+TGG + chr7_2:79847788-79847807 None:intergenic 35.0%
GAATATTGTAACAGTGCATG+AGG + chr7_2:79847924-79847943 None:intergenic 35.0%
! AATTTTAGACCTCGACAGAT+AGG + chr7_2:79847978-79847997 None:intergenic 35.0%
!! AGTAGTTGATTTGGGTTAGA+AGG - chr7_2:79848136-79848155 Msa1080390:CDS 35.0%
!! GTAGTTGATTTGGGTTAGAA+GGG - chr7_2:79848137-79848156 Msa1080390:CDS 35.0%
!! TAGTTGATTTGGGTTAGAAG+GGG - chr7_2:79848138-79848157 Msa1080390:CDS 35.0%
! GTAAAGTTAGGGTACCAAAA+TGG - chr7_2:79848223-79848242 Msa1080390:intron 35.0%
!!! CTTATTTTGTGGCATCACTT+TGG + chr7_2:79848269-79848288 None:intergenic 35.0%
CAAAGCCCAAATCATACATT+TGG + chr7_2:79848300-79848319 None:intergenic 35.0%
! AATAAGGGTGGTAAAGTGTT+GGG + chr7_2:79848349-79848368 None:intergenic 35.0%
TAATAAGGGTGGTAAAGTGT+TGG + chr7_2:79848350-79848369 None:intergenic 35.0%
AAACTAGCGTATAATAAGGG+TGG + chr7_2:79848361-79848380 None:intergenic 35.0%
TAGTATCTTCACATCATGGA+CGG + chr7_2:79848567-79848586 None:intergenic 35.0%
TCCATGATGTGAAGATACTA+CGG - chr7_2:79848567-79848586 Msa1080390:intron 35.0%
TTACGACTGGAAAAATGTCA+TGG - chr7_2:79848667-79848686 Msa1080390:intron 35.0%
! TGTAACTTTTGGCACTAGAT+TGG - chr7_2:79848721-79848740 Msa1080390:intron 35.0%
AAGTACAGTTCCAAAACGAT+AGG + chr7_2:79848780-79848799 None:intergenic 35.0%
GAGTTCGAACATTGACATAT+TGG + chr7_2:79848973-79848992 None:intergenic 35.0%
!! GAAGTTTCTAGAGTAACCTC+CGG + chr7_2:79845979-79845998 None:intergenic 40.0%
! GGTTACTCTAGAAACTTCCA+TGG - chr7_2:79845981-79846000 Msa1080390:three_prime_UTR 40.0%
GGATTTCATAGTACAAGGTG+GGG - chr7_2:79846303-79846322 Msa1080390:three_prime_UTR 40.0%
CACTGCCATAAACAACAAAG+TGG + chr7_2:79846708-79846727 None:intergenic 40.0%
AATGCTGGCCCTAATACTAA+CGG - chr7_2:79846793-79846812 Msa1080390:intron 40.0%
GGAAAATGCACCATGCTTAT+TGG - chr7_2:79847041-79847060 Msa1080390:intron 40.0%
! ATGTAATCTGAGGTCACTGA+TGG - chr7_2:79847241-79847260 Msa1080390:CDS 40.0%
! CAGCTGTCTAATATCCGTTT+TGG + chr7_2:79847395-79847414 None:intergenic 40.0%
! CCGAATATTGTGTGTTTTCC+TGG + chr7_2:79847651-79847670 None:intergenic 40.0%
ATATTCGGAAGAGTAAGTCG+GGG - chr7_2:79847663-79847682 Msa1080390:intron 40.0%
! TCAGATGACCAACATTTTCG+AGG + chr7_2:79847885-79847904 None:intergenic 40.0%
TCGAAAATGTTGGTCATCTG+AGG - chr7_2:79847884-79847903 Msa1080390:intron 40.0%
AAACACGTTGGATCTAGGTT+TGG - chr7_2:79848058-79848077 Msa1080390:intron 40.0%
GTCGCCTTTACACAAAATCT+CGG + chr7_2:79848168-79848187 None:intergenic 40.0%
TTTGTGTAAAGGCGACAGAT+TGG - chr7_2:79848172-79848191 Msa1080390:CDS 40.0%
TGACCAACTGAGGTAAAGTT+AGG - chr7_2:79848211-79848230 Msa1080390:intron 40.0%
GACCAACTGAGGTAAAGTTA+GGG - chr7_2:79848212-79848231 Msa1080390:intron 40.0%
TACCCTAACTTTACCTCAGT+TGG + chr7_2:79848217-79848236 None:intergenic 40.0%
!! ATGTTATAAGGGTGTCTTCC+AGG - chr7_2:79848389-79848408 Msa1080390:intron 40.0%
AGTATCTTCACATCATGGAC+GGG + chr7_2:79848566-79848585 None:intergenic 40.0%
TCCGTAGTATCTTCACATCA+TGG + chr7_2:79848571-79848590 None:intergenic 40.0%
!! CATATTGGTTCATGCATCAG+AGG + chr7_2:79848958-79848977 None:intergenic 40.0%
AGCATGCACCTAGAACTTGT+AGG - chr7_2:79846125-79846144 Msa1080390:three_prime_UTR 45.0%
AGAGGAGGAGAATCCATCTA+TGG - chr7_2:79846343-79846362 Msa1080390:CDS 45.0%
GAGGAGGAGAATCCATCTAT+GGG - chr7_2:79846344-79846363 Msa1080390:CDS 45.0%
TGTTTATTCAAAGGGGGCCT+AGG - chr7_2:79846644-79846663 Msa1080390:intron 45.0%
!!! AAAGGGGGCCTAGGTTTTTT+TGG - chr7_2:79846653-79846672 Msa1080390:intron 45.0%
!!! AAGGGGGCCTAGGTTTTTTT+GGG - chr7_2:79846654-79846673 Msa1080390:intron 45.0%
AAACAAGAGCTGAAGCACAC+TGG - chr7_2:79846748-79846767 Msa1080390:intron 45.0%
CACCATGCAAGTGAGTAACA+CGG + chr7_2:79846945-79846964 None:intergenic 45.0%
TGTTACTCACTTGCATGGTG+AGG - chr7_2:79846945-79846964 Msa1080390:intron 45.0%
TTGGGTGTCCTCGAAAATGT+TGG - chr7_2:79847874-79847893 Msa1080390:intron 45.0%
TCCACGCTGAGTAGTTGATT+TGG - chr7_2:79848127-79848146 Msa1080390:CDS 45.0%
! CCACGCTGAGTAGTTGATTT+GGG - chr7_2:79848128-79848147 Msa1080390:CDS 45.0%
TGTAAAGGCGACAGATTGGA+CGG - chr7_2:79848176-79848195 Msa1080390:CDS 45.0%
!! TAAGGGTGTCTTCCAGGAAA+TGG - chr7_2:79848395-79848414 Msa1080390:intron 45.0%
GATACTACGGACATCAGTCA+AGG - chr7_2:79848580-79848599 Msa1080390:CDS 45.0%
ATCGCTGACATAGTTACGAC+TGG - chr7_2:79848654-79848673 Msa1080390:intron 45.0%
CTGTCATGCACGATTGACAT+AGG - chr7_2:79848839-79848858 Msa1080390:intron 45.0%
TGAAGTCTGCACCATTAGAG+CGG + chr7_2:79848913-79848932 None:intergenic 45.0%
TTGGTTCATGCATCAGAGGA+TGG + chr7_2:79848954-79848973 None:intergenic 45.0%
!!! TAACATTTTTTTTTTTTTTT+TGG - chr7_2:79846084-79846103 Msa1080390:three_prime_UTR 5.0%
!!! AACATTTTTTTTTTTTTTTT+GGG - chr7_2:79846085-79846104 Msa1080390:three_prime_UTR 5.0%
GAGAGAGAGAGAGAGAGTGA+AGG - chr7_2:79845896-79845915 Msa1080390:three_prime_UTR 50.0%
AAAATGTGGGCAAGCGCAGA+AGG - chr7_2:79845946-79845965 Msa1080390:three_prime_UTR 50.0%
TTACCATCCAAAGAGGGGCA+CGG + chr7_2:79846844-79846863 None:intergenic 50.0%
! CACCGTGTTACTCACTTGCA+TGG - chr7_2:79846940-79846959 Msa1080390:intron 50.0%
CAACGAAAGCCTATCTGTCG+AGG - chr7_2:79847966-79847985 Msa1080390:intron 50.0%
CCCAAATCAACTACTCAGCG+TGG + chr7_2:79848131-79848150 None:intergenic 50.0%
AGGGCTAACTTGACCAACTG+AGG - chr7_2:79848201-79848220 Msa1080390:intron 50.0%
CTCGACGGTGAATGAACCCA+TGG + chr7_2:79846001-79846020 None:intergenic 55.0%
CATGGGTTCATTCACCGTCG+AGG - chr7_2:79845999-79846018 Msa1080390:three_prime_UTR 55.0%
TACAAGGTGGGGATCCCACT+GGG - chr7_2:79846314-79846333 Msa1080390:three_prime_UTR 55.0%
CGGAAGAGTAAGTCGGGGAA+TGG - chr7_2:79847668-79847687 Msa1080390:intron 55.0%
AGGCGACAGATTGGACGGAA+AGG - chr7_2:79848181-79848200 Msa1080390:CDS 55.0%
GGCGACAGATTGGACGGAAA+GGG - chr7_2:79848182-79848201 Msa1080390:CDS 55.0%
ATGCACCACCACCGCTCTAA+TGG - chr7_2:79848899-79848918 Msa1080390:intron 55.0%
AGTCTGCACCATTAGAGCGG+TGG + chr7_2:79848910-79848929 None:intergenic 55.0%
ATGTGGGCAAGCGCAGAAGG+TGG - chr7_2:79845949-79845968 Msa1080390:three_prime_UTR 60.0%
AAGCGCAGAAGGTGGTGCTC+CGG - chr7_2:79845957-79845976 Msa1080390:three_prime_UTR 60.0%
GTACAAGGTGGGGATCCCAC+TGG - chr7_2:79846313-79846332 Msa1080390:three_prime_UTR 60.0%
GATCCCACTGGGACAGGAAG+AGG - chr7_2:79846325-79846344 Msa1080390:exon 60.0%
CCTCCTCTTCCTGTCCCAGT+GGG + chr7_2:79846331-79846350 None:intergenic 60.0%
TCCTCCTCTTCCTGTCCCAG+TGG + chr7_2:79846332-79846351 None:intergenic 60.0%
GAGCTGAAGCACACTGGAGC+TGG - chr7_2:79846754-79846773 Msa1080390:intron 60.0%
CTGCACCATTAGAGCGGTGG+TGG + chr7_2:79848907-79848926 None:intergenic 60.0%
CCCACTGGGACAGGAAGAGG+AGG - chr7_2:79846328-79846347 Msa1080390:exon 65.0%
TCTCGCACCGTGCCCCTCTT+TGG - chr7_2:79846834-79846853 Msa1080390:intron 65.0%
GCACCGTGCCCCTCTTTGGA+TGG - chr7_2:79846838-79846857 Msa1080390:intron 65.0%
CGCAGAAGGTGGTGCTCCGG+AGG - chr7_2:79845960-79845979 Msa1080390:three_prime_UTR 70.0%
GGTGGGGATCCCACTGGGAC+AGG - chr7_2:79846319-79846338 Msa1080390:exon 70.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 79845895 79849050 79845895 ID=Msa1080390;Name=Msa1080390
chr7_2 mRNA 79845895 79849050 79845895 ID=Msa1080390-mRNA-1;Parent=Msa1080390;Name=Msa1080390-mRNA-1;_AED=0.06;_eAED=0.06;_QI=54|1|1|1|0.8|0.83|6|443|164
chr7_2 exon 79845895 79846383 79845895 ID=Msa1080390-mRNA-1:exon:20124;Parent=Msa1080390-mRNA-1
chr7_2 exon 79847209 79847293 79847209 ID=Msa1080390-mRNA-1:exon:20123;Parent=Msa1080390-mRNA-1
chr7_2 exon 79848086 79848219 79848086 ID=Msa1080390-mRNA-1:exon:20122;Parent=Msa1080390-mRNA-1
chr7_2 exon 79848580 79848641 79848580 ID=Msa1080390-mRNA-1:exon:20121;Parent=Msa1080390-mRNA-1
chr7_2 exon 79848735 79848830 79848735 ID=Msa1080390-mRNA-1:exon:20120;Parent=Msa1080390-mRNA-1
chr7_2 exon 79848925 79849050 79848925 ID=Msa1080390-mRNA-1:exon:20119;Parent=Msa1080390-mRNA-1
chr7_2 five_prime_UTR 79848997 79849050 79848997 ID=Msa1080390-mRNA-1:five_prime_utr;Parent=Msa1080390-mRNA-1
chr7_2 CDS 79848925 79848996 79848925 ID=Msa1080390-mRNA-1:cds;Parent=Msa1080390-mRNA-1
chr7_2 CDS 79848735 79848830 79848735 ID=Msa1080390-mRNA-1:cds;Parent=Msa1080390-mRNA-1
chr7_2 CDS 79848580 79848641 79848580 ID=Msa1080390-mRNA-1:cds;Parent=Msa1080390-mRNA-1
chr7_2 CDS 79848086 79848219 79848086 ID=Msa1080390-mRNA-1:cds;Parent=Msa1080390-mRNA-1
chr7_2 CDS 79847209 79847293 79847209 ID=Msa1080390-mRNA-1:cds;Parent=Msa1080390-mRNA-1
chr7_2 CDS 79846338 79846383 79846338 ID=Msa1080390-mRNA-1:cds;Parent=Msa1080390-mRNA-1
chr7_2 three_prime_UTR 79845895 79846337 79845895 ID=Msa1080390-mRNA-1:three_prime_utr;Parent=Msa1080390-mRNA-1
Gene Sequence

>Msa1080390

ATGTGGGCAAGCGCAGAAGGTGGTGCTCCGGAGGTTACTCTAGAAACTTCCATGGGTTCATTCACCGTCGAGTTGTACTACAAGCATGCACCTAGAACTTGTAGGAACTTCATTGAACTATCTCGTAGAGGTTATTACGACAACGTTAAGTTCCACAGAATCATCAAGGATTTCATAGTACAAGGTGGGGATCCCACTGGGACAGGAAGAGGAGGAGAATCCATCTATGGTGCTAAATTTGAAGATGAGATTAAACAAGAGCTGAAGCACACTGGAGCTGGTATTTTATCAATGGCTAATGCTGGCCCTAATACTAACGGAAGTCAGTTCTTTATTACTCTCGCACCGTGCCCCTCTTTGGATGGAAAACACACAATATTCGGAAGAGTAAGTCGGGGAATGGAAATCATCAAAAGACTTGGCAGTGTCCAAACAGATAACAATGACAGGCCCGTCCATGATGTGAAGATACTACGGACATCAGTCAAGGATTGA
Protein sequence

>Msa1080390

MWASAEGGAPEVTLETSMGSFTVELYYKHAPRTCRNFIELSRRGYYDNVKFHRIIKDFIVQGGDPTGTGRGGESIYGAKFEDEIKQELKHTGAGILSMANAGPNTNGSQFFITLAPCPSLDGKHTIFGRVSRGMEIIKRLGSVQTDNNDRPVHDVKILRTSVKD*