AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0128330


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0128330 MtrunA17_Chr1g0195141 99.061 213 2 0 1 213 1 213 1.81e-154 426
Msa0128330 MtrunA17_Chr7g0269621 93.023 215 13 1 1 213 1 215 1.91e-132 371
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0128330 AT3G16780.1 84.135 208 31 1 1 206 1 208 1.70e-125 353
Msa0128330 AT1G02780.1 92.473 186 14 0 1 186 1 186 8.64e-116 329
Msa0128330 AT4G02230.1 85.915 213 25 1 1 213 1 208 8.16e-115 326
Msa0128330 AT4G16030.1 42.384 151 32 9 57 195 6 113 1.72e-14 67.4

Find 91 sgRNAs with CRISPR-Local

Find 326 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGATACTTGATTTACTTCT+TGG 0.183729 1_3:+57990300 None:intergenic
CCTCCTCATCCAAAGGATTT+TGG 0.205932 1_3:+57990856 None:intergenic
TACTTCTTGGATTTCTTTGA+TGG 0.223836 1_3:+57990313 None:intergenic
AAAGGAAGGAATTTCATAAT+TGG 0.234687 1_3:+57990133 None:intergenic
TAACCAACTTCCTGATGTTT+TGG 0.238015 1_3:+57991460 None:intergenic
GAGATTTCATTGCACTCATT+AGG 0.315100 1_3:+57992173 None:intergenic
GCTGTTGCAGCTGGTGCGGC+TGG 0.322299 1_3:+57990427 None:intergenic
AGGCATGATAGGGGAATTAA+AGG 0.340400 1_3:+57990115 None:intergenic
CTCTCTAGCCTTCTCAGCCT+TGG 0.342124 1_3:+57990694 None:intergenic
GCGGCTGGTGCTGCAGCTGC+AGG 0.351870 1_3:+57990442 None:intergenic
GGCCAAGAGGGCGAAGAATA+AGG 0.353398 1_3:-57990648 Msa0128330:CDS
CAAGAACAAGAGAGTCCTTA+TGG 0.366020 1_3:-57990732 Msa0128330:CDS
AGATTTCATTGCACTCATTA+GGG 0.375558 1_3:+57992174 None:intergenic
GACTGGGTTGCTGTTGCAGC+TGG 0.390238 1_3:+57990418 None:intergenic
AAGGGACGTCATTCTGGATA+TGG 0.390520 1_3:-57991360 Msa0128330:intron
AAGAGGAAGGGACGTCATTC+TGG 0.393970 1_3:-57991366 Msa0128330:CDS
GGCTCCCCACCAAAATCCTT+TGG 0.400346 1_3:-57990865 Msa0128330:CDS
AGTGAATCTTAGTTGGCTTC+CGG 0.400791 1_3:+57991421 None:intergenic
AGCCTTATTCTTCGCCCTCT+TGG 0.400876 1_3:+57990646 None:intergenic
TGTCAATCTTCTTTGCCTCT+CGG 0.425253 1_3:+57990801 None:intergenic
TTAAGGATGGCTTCATTATC+CGG 0.428777 1_3:-57991440 Msa0128330:CDS
AGTGTGGTCGTGGCAAGGTC+TGG 0.433202 1_3:-57992202 Msa0128330:CDS
AACTAGGGTTAGTGAGAGAT+AGG 0.436037 1_3:-57992344 Msa0128330:five_prime_UTR
TCGTTGCAGGCCAAAACATC+AGG 0.437194 1_3:-57991470 Msa0128330:intron
TCTCCCTCACACTCTCTCTC+TGG 0.449506 1_3:+57992284 None:intergenic
GTTTAGATACTTACTGGGAC+TGG 0.459001 1_3:+57990401 None:intergenic
GCTGCAGGAACCTTCTCTCC+TGG 0.459743 1_3:+57990457 None:intergenic
AAACATCAGGAAGTTGGTTA+AGG 0.466451 1_3:-57991457 Msa0128330:CDS
AGCAAAGCGCTCTTCTCTGC+GGG 0.467270 1_3:+57990604 None:intergenic
TTGATAAATAGGTAAAAGAA+AGG 0.468156 1_3:-57990903 Msa0128330:intron
GACATTATCTGATCAGTTTG+AGG 0.469564 1_3:-57990669 Msa0128330:CDS
GTAGCAGTAGTTACGTGAAT+TGG 0.471557 1_3:+57992145 None:intergenic
GGGCGAAGAATAAGGCTAGC+AGG 0.473984 1_3:-57990640 Msa0128330:CDS
TGAGGAGGATGCGTGTCCTC+AGG 0.478520 1_3:-57990841 Msa0128330:CDS
GAGCGGGAGTGAATCTTAGT+TGG 0.479570 1_3:+57991414 None:intergenic
AAATGAAAATACTCGACCTC+TGG 0.480180 1_3:+57990280 None:intergenic
TTCACTCCCGCTCCCGTGCT+AGG 0.486394 1_3:-57991404 Msa0128330:CDS
TGGTCGTGGCAAGGTCTGGC+TGG 0.492270 1_3:-57992198 Msa0128330:CDS
AGCGTACTCAAGTGTGGTCG+TGG 0.503558 1_3:-57992212 Msa0128330:CDS
CTCCTTCATACGCCTAGCAC+GGG 0.507928 1_3:+57991392 None:intergenic
AGAATGACGTCCCTTCCTCT+TGG 0.519292 1_3:+57991368 None:intergenic
CTCCCGTGCTAGGCGTATGA+AGG 0.520929 1_3:-57991394 Msa0128330:CDS
CCTCCTTCATACGCCTAGCA+CGG 0.532368 1_3:+57991391 None:intergenic
ACTTGTGAATACTCTCCATA+AGG 0.533671 1_3:+57990717 None:intergenic
ATATAGCCTCCTTCCACCGC+AGG 0.537517 1_3:-57992315 Msa0128330:five_prime_UTR
AGGCCAAAACATCAGGAAGT+TGG 0.540880 1_3:-57991463 Msa0128330:CDS
ATCAGGAAGTTGGTTAAGGA+TGG 0.541752 1_3:-57991453 Msa0128330:CDS
TCACAAGTCCAAGGCTGAGA+AGG 0.542917 1_3:-57990702 Msa0128330:CDS
TTTAGATACTTACTGGGACT+GGG 0.545217 1_3:+57990402 None:intergenic
CATACGCCTAGCACGGGAGC+GGG 0.545913 1_3:+57991398 None:intergenic
CCACCAAAATCCTTTGGATG+AGG 0.555880 1_3:-57990859 Msa0128330:CDS
GTTCGATAACCTGCGGTGGA+AGG 0.557244 1_3:+57992306 None:intergenic
TATGAAGGAGGCCAAGAGGA+AGG 0.560584 1_3:-57991379 Msa0128330:CDS
TGATATGTACATGAAGGTGA+AGG 0.563752 1_3:-57990765 Msa0128330:CDS
TGTATAGGGTCCAGGAGAGA+AGG 0.563890 1_3:-57990467 Msa0128330:intron
TGATAAATAGGTAAAAGAAA+GGG 0.567052 1_3:-57990902 Msa0128330:intron
TCATACGCCTAGCACGGGAG+CGG 0.568186 1_3:+57991397 None:intergenic
ACTCAAGTGTGGTCGTGGCA+AGG 0.568268 1_3:-57992207 Msa0128330:CDS
CCAAAATCCTTTGGATGAGG+AGG 0.569919 1_3:-57990856 Msa0128330:CDS
GGGAGAGAGAAAGAGAGAGA+TGG 0.573584 1_3:-57992267 Msa0128330:exon
CGATAACCTGCGGTGGAAGG+AGG 0.574079 1_3:+57992309 None:intergenic
GGCGAAGAATAAGGCTAGCA+GGG 0.575881 1_3:-57990639 Msa0128330:CDS
AGAATAAGGCTAGCAGGGAA+AGG 0.589605 1_3:-57990634 Msa0128330:CDS
CGAACCAGAGAGAGAGTGTG+AGG 0.589641 1_3:-57992288 Msa0128330:five_prime_UTR
ATGATAGGGGAATTAAAGGA+AGG 0.592567 1_3:+57990119 None:intergenic
GAGCAAAGCGCTCTTCTCTG+CGG 0.593895 1_3:+57990603 None:intergenic
TGATCAGTTTGAGGCCAAGA+GGG 0.598337 1_3:-57990660 Msa0128330:CDS
TTGGTATGGAAAATGCACTT+TGG 0.600057 1_3:-57990183 Msa0128330:three_prime_UTR
CTCTCTGGTTCGATAACCTG+CGG 0.605800 1_3:+57992299 None:intergenic
CCGTGCTAGGCGTATGAAGG+AGG 0.607212 1_3:-57991391 Msa0128330:CDS
TAAAAGAAAGGGTACAAGAG+AGG 0.608223 1_3:-57990891 Msa0128330:CDS
CACGCATCCTCCTCATCCAA+AGG 0.610691 1_3:+57990849 None:intergenic
GAAAGGGTACAAGAGAGGCT+AGG 0.611551 1_3:-57990886 Msa0128330:CDS
GATATGTACATGAAGGTGAA+GGG 0.614061 1_3:-57990764 Msa0128330:CDS
ATGAAGGAGGCCAAGAGGAA+GGG 0.617125 1_3:-57991378 Msa0128330:CDS
GGAGAGTATTCACAAGTCCA+AGG 0.617146 1_3:-57990711 Msa0128330:CDS
GGTTGCTGTTGCAGCTGGTG+CGG 0.620402 1_3:+57990423 None:intergenic
TCTGGTTCGATAACCTGCGG+TGG 0.621365 1_3:+57992302 None:intergenic
GAACCAGAGAGAGAGTGTGA+GGG 0.622326 1_3:-57992287 Msa0128330:five_prime_UTR
GCCGCCAGCGTACTCAAGTG+TGG 0.623938 1_3:-57992218 Msa0128330:CDS
CTGATCAGTTTGAGGCCAAG+AGG 0.627289 1_3:-57990661 Msa0128330:CDS
GGCGTATGAAGGAGGCCAAG+AGG 0.634053 1_3:-57991383 Msa0128330:CDS
GTAGTTACGTGAATTGGCCA+TGG 0.639618 1_3:+57992151 None:intergenic
TGAGTGCAATGAAATCTCCA+TGG 0.652574 1_3:-57992168 Msa0128330:CDS
GAAGTAAATCAAGTATCCAG+AGG 0.666529 1_3:-57990296 Msa0128330:exon
ACGACCACACTTGAGTACGC+TGG 0.682599 1_3:+57992214 None:intergenic
GTATCATGATATGTACATGA+AGG 0.691105 1_3:-57990771 Msa0128330:CDS
ACCACACTTGAGTACGCTGG+CGG 0.695452 1_3:+57992217 None:intergenic
TGTCGCTCAAACTTCAGAAG+CGG 0.696714 1_3:-57992244 Msa0128330:CDS
TTTGCTTCGCAAGTACCGAG+AGG 0.708306 1_3:-57990816 Msa0128330:CDS
ACTTGCGAAGCAAACGCCTG+AGG 0.708807 1_3:+57990825 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGTTAAAATATTTTAATTTC+AGG - chr1_3:57990637-57990656 Msa0128330:CDS 10.0%
!!! TGTTAAAATATTTTAATTTC+AGG - chr1_3:57990637-57990656 Msa0128330:CDS 10.0%
!! AATTCATATTAAAACTATCA+AGG + chr1_3:57991159-57991178 None:intergenic 15.0%
!!! ATAGTTTTAATATGAATTGA+AGG - chr1_3:57991161-57991180 Msa0128330:intron 15.0%
!! CATATATTATCAAAACATTA+TGG + chr1_3:57991908-57991927 None:intergenic 15.0%
!! AATTCATATTAAAACTATCA+AGG + chr1_3:57991159-57991178 None:intergenic 15.0%
!!! ATAGTTTTAATATGAATTGA+AGG - chr1_3:57991161-57991180 Msa0128330:intron 15.0%
!! CATATATTATCAAAACATTA+TGG + chr1_3:57991908-57991927 None:intergenic 15.0%
!! AAAATCATAACACAAAACAT+TGG + chr1_3:57990372-57990391 None:intergenic 20.0%
!!! ACAACATTTCAATGTTTTTT+GGG + chr1_3:57990570-57990589 None:intergenic 20.0%
!! TTCATAACAAAAATGAGTTA+AGG + chr1_3:57990889-57990908 None:intergenic 20.0%
!! TATAGAATACATTCTCTATT+TGG - chr1_3:57991258-57991277 Msa0128330:intron 20.0%
!! ATTTGCACTTATTGATAAAT+AGG - chr1_3:57991562-57991581 Msa0128330:intron 20.0%
!! TTGATAAATAGGTAAAAGAA+AGG - chr1_3:57991573-57991592 Msa0128330:intron 20.0%
!! TGATAAATAGGTAAAAGAAA+GGG - chr1_3:57991574-57991593 Msa0128330:intron 20.0%
!! TGATAATATATGTAGTGAAT+TGG - chr1_3:57991916-57991935 Msa0128330:intron 20.0%
!!! TAGTTTTTTTTGTTATGTTG+TGG - chr1_3:57992115-57992134 Msa0128330:intron 20.0%
!!! TACAAGTACAATTTTGTATT+GGG - chr1_3:57992251-57992270 Msa0128330:CDS 20.0%
!!! TTTATATTTTGTTGCCATTT+TGG - chr1_3:57992274-57992293 Msa0128330:five_prime_UTR 20.0%
!! AAAATCATAACACAAAACAT+TGG + chr1_3:57990372-57990391 None:intergenic 20.0%
!!! ACAACATTTCAATGTTTTTT+GGG + chr1_3:57990570-57990589 None:intergenic 20.0%
!! TTCATAACAAAAATGAGTTA+AGG + chr1_3:57990889-57990908 None:intergenic 20.0%
!! TATAGAATACATTCTCTATT+TGG - chr1_3:57991258-57991277 Msa0128330:intron 20.0%
!! ATTTGCACTTATTGATAAAT+AGG - chr1_3:57991562-57991581 Msa0128330:intron 20.0%
!! TTGATAAATAGGTAAAAGAA+AGG - chr1_3:57991573-57991592 Msa0128330:intron 20.0%
!! TGATAAATAGGTAAAAGAAA+GGG - chr1_3:57991574-57991593 Msa0128330:intron 20.0%
!! TGATAATATATGTAGTGAAT+TGG - chr1_3:57991916-57991935 Msa0128330:intron 20.0%
!!! TAGTTTTTTTTGTTATGTTG+TGG - chr1_3:57992115-57992134 Msa0128330:intron 20.0%
!!! TACAAGTACAATTTTGTATT+GGG - chr1_3:57992251-57992270 Msa0128330:CDS 20.0%
!!! TTTATATTTTGTTGCCATTT+TGG - chr1_3:57992274-57992293 Msa0128330:five_prime_UTR 20.0%
!!! GAATAGATGTTGTTTTTGTT+CGG - chr1_3:57990481-57990500 Msa0128330:intron 25.0%
!!! CACAACATTTCAATGTTTTT+TGG + chr1_3:57990571-57990590 None:intergenic 25.0%
!!! ACTTGATTAAGATTTTAGAG+TGG - chr1_3:57990591-57990610 Msa0128330:intron 25.0%
! ATTAAAATGCCCAATTTACT+TGG - chr1_3:57990829-57990848 Msa0128330:CDS 25.0%
! TTAAAATGCCCAATTTACTT+GGG - chr1_3:57990830-57990849 Msa0128330:CDS 25.0%
! TGATTGTGTTAATTGTTGAT+TGG - chr1_3:57990916-57990935 Msa0128330:intron 25.0%
!! AAAGTGTTTAGATACTTACT+GGG + chr1_3:57992083-57992102 None:intergenic 25.0%
!!! AAAAGTGTTTAGATACTTAC+TGG + chr1_3:57992084-57992103 None:intergenic 25.0%
!! ATCTAAACACTTTTGTTACT+TGG - chr1_3:57992090-57992109 Msa0128330:intron 25.0%
!! GTACAAGTACAATTTTGTAT+TGG - chr1_3:57992250-57992269 Msa0128330:CDS 25.0%
! AAAGGAAGGAATTTCATAAT+TGG + chr1_3:57992346-57992365 None:intergenic 25.0%
!!! GAATAGATGTTGTTTTTGTT+CGG - chr1_3:57990481-57990500 Msa0128330:intron 25.0%
!!! CACAACATTTCAATGTTTTT+TGG + chr1_3:57990571-57990590 None:intergenic 25.0%
!!! ACTTGATTAAGATTTTAGAG+TGG - chr1_3:57990591-57990610 Msa0128330:intron 25.0%
! ATTAAAATGCCCAATTTACT+TGG - chr1_3:57990829-57990848 Msa0128330:CDS 25.0%
! TTAAAATGCCCAATTTACTT+GGG - chr1_3:57990830-57990849 Msa0128330:CDS 25.0%
! TGATTGTGTTAATTGTTGAT+TGG - chr1_3:57990916-57990935 Msa0128330:intron 25.0%
!! AAAGTGTTTAGATACTTACT+GGG + chr1_3:57992083-57992102 None:intergenic 25.0%
!!! AAAAGTGTTTAGATACTTAC+TGG + chr1_3:57992084-57992103 None:intergenic 25.0%
!! ATCTAAACACTTTTGTTACT+TGG - chr1_3:57992090-57992109 Msa0128330:intron 25.0%
!! GTACAAGTACAATTTTGTAT+TGG - chr1_3:57992250-57992269 Msa0128330:CDS 25.0%
! AAAGGAAGGAATTTCATAAT+TGG + chr1_3:57992346-57992365 None:intergenic 25.0%
AGATTTCATTGCACTCATTA+GGG + chr1_3:57990305-57990324 None:intergenic 30.0%
!! TGTTTTTGTTCGGAAATGTA+AGG - chr1_3:57990491-57990510 Msa0128330:intron 30.0%
!!! ATGTAAGGTGTGTTGTTTTA+TGG - chr1_3:57990506-57990525 Msa0128330:intron 30.0%
TATTCAATAGCAGAACTTGT+AGG - chr1_3:57990529-57990548 Msa0128330:intron 30.0%
!! TAGAGTGGATTTAGTTGTTT+TGG - chr1_3:57990606-57990625 Msa0128330:CDS 30.0%
!!! GACTCATAAGCTAGTTTTAA+GGG - chr1_3:57990659-57990678 Msa0128330:CDS 30.0%
! ATTTTTGTGCCTTTATGAAC+TGG - chr1_3:57990713-57990732 Msa0128330:CDS 30.0%
! TTTTTGTGCCTTTATGAACT+GGG - chr1_3:57990714-57990733 Msa0128330:CDS 30.0%
! AGCCTTTTCACTGAAAAAAT+TGG - chr1_3:57990748-57990767 Msa0128330:CDS 30.0%
! GCCTTTTCACTGAAAAAATT+GGG - chr1_3:57990749-57990768 Msa0128330:CDS 30.0%
! CCTTTTCACTGAAAAAATTG+GGG - chr1_3:57990750-57990769 Msa0128330:CDS 30.0%
! GAAAAAATTGGGGCTTTTAT+TGG - chr1_3:57990760-57990779 Msa0128330:CDS 30.0%
TCTCCACTAAGTTCATATTA+GGG + chr1_3:57990810-57990829 None:intergenic 30.0%
ATCTCCACTAAGTTCATATT+AGG + chr1_3:57990811-57990830 None:intergenic 30.0%
TAAAATGCCCAATTTACTTG+GGG - chr1_3:57990831-57990850 Msa0128330:CDS 30.0%
TGTATTTCACTGATCATATG+TGG - chr1_3:57990950-57990969 Msa0128330:intron 30.0%
TCAGTTGTGTAGAATATTGT+AGG - chr1_3:57991429-57991448 Msa0128330:CDS 30.0%
GTATCATGATATGTACATGA+AGG - chr1_3:57991705-57991724 Msa0128330:intron 30.0%
!! CCTATACATTTTAAAAGGCA+GGG + chr1_3:57991997-57992016 None:intergenic 30.0%
!!! CCTGCCTTTTAAAATGTATA+GGG - chr1_3:57991995-57992014 Msa0128330:intron 30.0%
! TGGACCCTATACATTTTAAA+AGG + chr1_3:57992002-57992021 None:intergenic 30.0%
!!! TTTTAAAATGTATAGGGTCC+AGG - chr1_3:57992001-57992020 Msa0128330:intron 30.0%
TACTTCTTGGATTTCTTTGA+TGG + chr1_3:57992166-57992185 None:intergenic 30.0%
TGGATACTTGATTTACTTCT+TGG + chr1_3:57992179-57992198 None:intergenic 30.0%
!!! ATTTTGTTGCCATTTTGGTA+TGG - chr1_3:57992279-57992298 Msa0128330:five_prime_UTR 30.0%
AGATTTCATTGCACTCATTA+GGG + chr1_3:57990305-57990324 None:intergenic 30.0%
!! TGTTTTTGTTCGGAAATGTA+AGG - chr1_3:57990491-57990510 Msa0128330:intron 30.0%
!!! ATGTAAGGTGTGTTGTTTTA+TGG - chr1_3:57990506-57990525 Msa0128330:intron 30.0%
TATTCAATAGCAGAACTTGT+AGG - chr1_3:57990529-57990548 Msa0128330:intron 30.0%
!! TAGAGTGGATTTAGTTGTTT+TGG - chr1_3:57990606-57990625 Msa0128330:CDS 30.0%
!!! GACTCATAAGCTAGTTTTAA+GGG - chr1_3:57990659-57990678 Msa0128330:CDS 30.0%
! ATTTTTGTGCCTTTATGAAC+TGG - chr1_3:57990713-57990732 Msa0128330:CDS 30.0%
! TTTTTGTGCCTTTATGAACT+GGG - chr1_3:57990714-57990733 Msa0128330:CDS 30.0%
! AGCCTTTTCACTGAAAAAAT+TGG - chr1_3:57990748-57990767 Msa0128330:CDS 30.0%
! GCCTTTTCACTGAAAAAATT+GGG - chr1_3:57990749-57990768 Msa0128330:CDS 30.0%
! CCTTTTCACTGAAAAAATTG+GGG - chr1_3:57990750-57990769 Msa0128330:CDS 30.0%
! GAAAAAATTGGGGCTTTTAT+TGG - chr1_3:57990760-57990779 Msa0128330:CDS 30.0%
TCTCCACTAAGTTCATATTA+GGG + chr1_3:57990810-57990829 None:intergenic 30.0%
ATCTCCACTAAGTTCATATT+AGG + chr1_3:57990811-57990830 None:intergenic 30.0%
TAAAATGCCCAATTTACTTG+GGG - chr1_3:57990831-57990850 Msa0128330:CDS 30.0%
TGTATTTCACTGATCATATG+TGG - chr1_3:57990950-57990969 Msa0128330:intron 30.0%
TCAGTTGTGTAGAATATTGT+AGG - chr1_3:57991429-57991448 Msa0128330:CDS 30.0%
GTATCATGATATGTACATGA+AGG - chr1_3:57991705-57991724 Msa0128330:intron 30.0%
!! CCTATACATTTTAAAAGGCA+GGG + chr1_3:57991997-57992016 None:intergenic 30.0%
!!! CCTGCCTTTTAAAATGTATA+GGG - chr1_3:57991995-57992014 Msa0128330:intron 30.0%
! TGGACCCTATACATTTTAAA+AGG + chr1_3:57992002-57992021 None:intergenic 30.0%
!!! TTTTAAAATGTATAGGGTCC+AGG - chr1_3:57992001-57992020 Msa0128330:intron 30.0%
TACTTCTTGGATTTCTTTGA+TGG + chr1_3:57992166-57992185 None:intergenic 30.0%
TGGATACTTGATTTACTTCT+TGG + chr1_3:57992179-57992198 None:intergenic 30.0%
!!! ATTTTGTTGCCATTTTGGTA+TGG - chr1_3:57992279-57992298 Msa0128330:five_prime_UTR 30.0%
GAGATTTCATTGCACTCATT+AGG + chr1_3:57990306-57990325 None:intergenic 35.0%
!!! GGACTCATAAGCTAGTTTTA+AGG - chr1_3:57990658-57990677 Msa0128330:CDS 35.0%
!!! CCCCAATTTTTTCAGTGAAA+AGG + chr1_3:57990753-57990772 None:intergenic 35.0%
GTACCCTAATATGAACTTAG+TGG - chr1_3:57990804-57990823 Msa0128330:CDS 35.0%
AAAATGCCCAATTTACTTGG+GGG - chr1_3:57990832-57990851 Msa0128330:CDS 35.0%
ATTTCACTGATCATATGTGG+TGG - chr1_3:57990953-57990972 Msa0128330:intron 35.0%
TTTCACTGATCATATGTGGT+GGG - chr1_3:57990954-57990973 Msa0128330:intron 35.0%
! TAACCAACTTCCTGATGTTT+TGG + chr1_3:57991019-57991038 None:intergenic 35.0%
! AAACATCAGGAAGTTGGTTA+AGG - chr1_3:57991019-57991038 Msa0128330:intron 35.0%
TTAAGGATGGCTTCATTATC+CGG - chr1_3:57991036-57991055 Msa0128330:intron 35.0%
CCATAATAATACTCGTGTGA+TGG + chr1_3:57991376-57991395 None:intergenic 35.0%
CCATCACACGAGTATTATTA+TGG - chr1_3:57991373-57991392 Msa0128330:CDS 35.0%
! ACTTCACACGAGTATTTCTA+TGG - chr1_3:57991494-57991513 Msa0128330:intron 35.0%
! TAAAAGAAAGGGTACAAGAG+AGG - chr1_3:57991585-57991604 Msa0128330:intron 35.0%
TGATATGTACATGAAGGTGA+AGG - chr1_3:57991711-57991730 Msa0128330:intron 35.0%
GATATGTACATGAAGGTGAA+GGG - chr1_3:57991712-57991731 Msa0128330:intron 35.0%
ACTTGTGAATACTCTCCATA+AGG + chr1_3:57991762-57991781 None:intergenic 35.0%
GACATTATCTGATCAGTTTG+AGG - chr1_3:57991807-57991826 Msa0128330:intron 35.0%
!! TTTTAAAAGGCAGGGTGATA+TGG + chr1_3:57991989-57992008 None:intergenic 35.0%
!!! CCCTGCCTTTTAAAATGTAT+AGG - chr1_3:57991994-57992013 Msa0128330:intron 35.0%
!! CCCTATACATTTTAAAAGGC+AGG + chr1_3:57991998-57992017 None:intergenic 35.0%
TTTAGATACTTACTGGGACT+GGG + chr1_3:57992077-57992096 None:intergenic 35.0%
GAAGTAAATCAAGTATCCAG+AGG - chr1_3:57992180-57992199 Msa0128330:CDS 35.0%
AAATGAAAATACTCGACCTC+TGG + chr1_3:57992199-57992218 None:intergenic 35.0%
! GTGCATTTTCCATACCAAAA+TGG + chr1_3:57992291-57992310 None:intergenic 35.0%
TTGGTATGGAAAATGCACTT+TGG - chr1_3:57992293-57992312 Msa0128330:five_prime_UTR 35.0%
GAGATTTCATTGCACTCATT+AGG + chr1_3:57990306-57990325 None:intergenic 35.0%
!!! GGACTCATAAGCTAGTTTTA+AGG - chr1_3:57990658-57990677 Msa0128330:CDS 35.0%
!!! CCCCAATTTTTTCAGTGAAA+AGG + chr1_3:57990753-57990772 None:intergenic 35.0%
GTACCCTAATATGAACTTAG+TGG - chr1_3:57990804-57990823 Msa0128330:CDS 35.0%
AAAATGCCCAATTTACTTGG+GGG - chr1_3:57990832-57990851 Msa0128330:CDS 35.0%
ATTTCACTGATCATATGTGG+TGG - chr1_3:57990953-57990972 Msa0128330:intron 35.0%
TTTCACTGATCATATGTGGT+GGG - chr1_3:57990954-57990973 Msa0128330:intron 35.0%
! TAACCAACTTCCTGATGTTT+TGG + chr1_3:57991019-57991038 None:intergenic 35.0%
! AAACATCAGGAAGTTGGTTA+AGG - chr1_3:57991019-57991038 Msa0128330:intron 35.0%
TTAAGGATGGCTTCATTATC+CGG - chr1_3:57991036-57991055 Msa0128330:intron 35.0%
CCATAATAATACTCGTGTGA+TGG + chr1_3:57991376-57991395 None:intergenic 35.0%
CCATCACACGAGTATTATTA+TGG - chr1_3:57991373-57991392 Msa0128330:CDS 35.0%
! ACTTCACACGAGTATTTCTA+TGG - chr1_3:57991494-57991513 Msa0128330:intron 35.0%
! TAAAAGAAAGGGTACAAGAG+AGG - chr1_3:57991585-57991604 Msa0128330:intron 35.0%
TGATATGTACATGAAGGTGA+AGG - chr1_3:57991711-57991730 Msa0128330:intron 35.0%
GATATGTACATGAAGGTGAA+GGG - chr1_3:57991712-57991731 Msa0128330:intron 35.0%
ACTTGTGAATACTCTCCATA+AGG + chr1_3:57991762-57991781 None:intergenic 35.0%
GACATTATCTGATCAGTTTG+AGG - chr1_3:57991807-57991826 Msa0128330:intron 35.0%
!! TTTTAAAAGGCAGGGTGATA+TGG + chr1_3:57991989-57992008 None:intergenic 35.0%
!!! CCCTGCCTTTTAAAATGTAT+AGG - chr1_3:57991994-57992013 Msa0128330:intron 35.0%
!! CCCTATACATTTTAAAAGGC+AGG + chr1_3:57991998-57992017 None:intergenic 35.0%
TTTAGATACTTACTGGGACT+GGG + chr1_3:57992077-57992096 None:intergenic 35.0%
GAAGTAAATCAAGTATCCAG+AGG - chr1_3:57992180-57992199 Msa0128330:CDS 35.0%
AAATGAAAATACTCGACCTC+TGG + chr1_3:57992199-57992218 None:intergenic 35.0%
! GTGCATTTTCCATACCAAAA+TGG + chr1_3:57992291-57992310 None:intergenic 35.0%
TTGGTATGGAAAATGCACTT+TGG - chr1_3:57992293-57992312 Msa0128330:five_prime_UTR 35.0%
! AACTAGGGTTAGTGAGAGAT+AGG - chr1_3:57990132-57990151 Msa0128330:three_prime_UTR 40.0%
TGAGTGCAATGAAATCTCCA+TGG - chr1_3:57990308-57990327 Msa0128330:exon 40.0%
GTAGCAGTAGTTACGTGAAT+TGG + chr1_3:57990334-57990353 None:intergenic 40.0%
ATAGCAGAACTTGTAGGACT+AGG - chr1_3:57990535-57990554 Msa0128330:intron 40.0%
TAGCAGAACTTGTAGGACTA+GGG - chr1_3:57990536-57990555 Msa0128330:intron 40.0%
TTGAGCATCCCAGTTCATAA+AGG + chr1_3:57990725-57990744 None:intergenic 40.0%
TGAGAACCCCCAAGTAAATT+GGG + chr1_3:57990841-57990860 None:intergenic 40.0%
ATGAGAACCCCCAAGTAAAT+TGG + chr1_3:57990842-57990861 None:intergenic 40.0%
CCAACCAAACCATTTATCAC+AGG + chr1_3:57990982-57991001 None:intergenic 40.0%
!! CCTGTGATAAATGGTTTGGT+TGG - chr1_3:57990979-57990998 Msa0128330:intron 40.0%
! ATCAGGAAGTTGGTTAAGGA+TGG - chr1_3:57991023-57991042 Msa0128330:intron 40.0%
! AGTGAATCTTAGTTGGCTTC+CGG + chr1_3:57991058-57991077 None:intergenic 40.0%
! TCAGTTGTGCGAAGTATTCT+AGG - chr1_3:57991298-57991317 Msa0128330:intron 40.0%
TCTATGGTACTTGCACTATC+AGG - chr1_3:57991510-57991529 Msa0128330:intron 40.0%
!! TCATCCAAAGGATTTTGGTG+GGG + chr1_3:57991618-57991637 None:intergenic 40.0%
!! CTCATCCAAAGGATTTTGGT+GGG + chr1_3:57991619-57991638 None:intergenic 40.0%
TGTCAATCTTCTTTGCCTCT+CGG + chr1_3:57991678-57991697 None:intergenic 40.0%
CAAGAACAAGAGAGTCCTTA+TGG - chr1_3:57991744-57991763 Msa0128330:intron 40.0%
GTTTAGATACTTACTGGGAC+TGG + chr1_3:57992078-57992097 None:intergenic 40.0%
ATTCCTTCCTTTAATTCCCC+TGG - chr1_3:57992354-57992373 Msa0128330:five_prime_UTR 40.0%
! AACTAGGGTTAGTGAGAGAT+AGG - chr1_3:57990132-57990151 Msa0128330:three_prime_UTR 40.0%
TGAGTGCAATGAAATCTCCA+TGG - chr1_3:57990308-57990327 Msa0128330:exon 40.0%
GTAGCAGTAGTTACGTGAAT+TGG + chr1_3:57990334-57990353 None:intergenic 40.0%
ATAGCAGAACTTGTAGGACT+AGG - chr1_3:57990535-57990554 Msa0128330:intron 40.0%
TAGCAGAACTTGTAGGACTA+GGG - chr1_3:57990536-57990555 Msa0128330:intron 40.0%
TTGAGCATCCCAGTTCATAA+AGG + chr1_3:57990725-57990744 None:intergenic 40.0%
TGAGAACCCCCAAGTAAATT+GGG + chr1_3:57990841-57990860 None:intergenic 40.0%
ATGAGAACCCCCAAGTAAAT+TGG + chr1_3:57990842-57990861 None:intergenic 40.0%
CCAACCAAACCATTTATCAC+AGG + chr1_3:57990982-57991001 None:intergenic 40.0%
!! CCTGTGATAAATGGTTTGGT+TGG - chr1_3:57990979-57990998 Msa0128330:intron 40.0%
! ATCAGGAAGTTGGTTAAGGA+TGG - chr1_3:57991023-57991042 Msa0128330:intron 40.0%
! AGTGAATCTTAGTTGGCTTC+CGG + chr1_3:57991058-57991077 None:intergenic 40.0%
! TCAGTTGTGCGAAGTATTCT+AGG - chr1_3:57991298-57991317 Msa0128330:intron 40.0%
TCTATGGTACTTGCACTATC+AGG - chr1_3:57991510-57991529 Msa0128330:intron 40.0%
!! TCATCCAAAGGATTTTGGTG+GGG + chr1_3:57991618-57991637 None:intergenic 40.0%
!! CTCATCCAAAGGATTTTGGT+GGG + chr1_3:57991619-57991638 None:intergenic 40.0%
TGTCAATCTTCTTTGCCTCT+CGG + chr1_3:57991678-57991697 None:intergenic 40.0%
CAAGAACAAGAGAGTCCTTA+TGG - chr1_3:57991744-57991763 Msa0128330:intron 40.0%
GTTTAGATACTTACTGGGAC+TGG + chr1_3:57992078-57992097 None:intergenic 40.0%
TGTCGCTCAAACTTCAGAAG+CGG - chr1_3:57990232-57990251 Msa0128330:three_prime_UTR 45.0%
GTAGTTACGTGAATTGGCCA+TGG + chr1_3:57990328-57990347 None:intergenic 45.0%
GGAGCCTGTGATAAATGGTT+TGG - chr1_3:57990975-57990994 Msa0128330:intron 45.0%
!! TTTGGTTGGTTTCTCGTTGC+AGG - chr1_3:57990993-57991012 Msa0128330:intron 45.0%
AGGCCAAAACATCAGGAAGT+TGG - chr1_3:57991013-57991032 Msa0128330:intron 45.0%
AAGGGACGTCATTCTGGATA+TGG - chr1_3:57991116-57991135 Msa0128330:intron 45.0%
GGTACTTGCACTATCAGGAT+AGG - chr1_3:57991515-57991534 Msa0128330:intron 45.0%
! CCTCATCCAAAGGATTTTGG+TGG + chr1_3:57991620-57991639 None:intergenic 45.0%
CCACCAAAATCCTTTGGATG+AGG - chr1_3:57991617-57991636 Msa0128330:intron 45.0%
! CCTCCTCATCCAAAGGATTT+TGG + chr1_3:57991623-57991642 None:intergenic 45.0%
CCAAAATCCTTTGGATGAGG+AGG - chr1_3:57991620-57991639 Msa0128330:intron 45.0%
!! GGAGAGTATTCACAAGTCCA+AGG - chr1_3:57991765-57991784 Msa0128330:intron 45.0%
! TGATCAGTTTGAGGCCAAGA+GGG - chr1_3:57991816-57991835 Msa0128330:intron 45.0%
AGAATAAGGCTAGCAGGGAA+AGG - chr1_3:57991842-57991861 Msa0128330:intron 45.0%
!! CTAACCCTAGTTTTTGCTCC+AGG + chr1_3:57990124-57990143 None:intergenic 45.0%
TGTCGCTCAAACTTCAGAAG+CGG - chr1_3:57990232-57990251 Msa0128330:three_prime_UTR 45.0%
GTAGTTACGTGAATTGGCCA+TGG + chr1_3:57990328-57990347 None:intergenic 45.0%
GGAGCCTGTGATAAATGGTT+TGG - chr1_3:57990975-57990994 Msa0128330:intron 45.0%
!! TTTGGTTGGTTTCTCGTTGC+AGG - chr1_3:57990993-57991012 Msa0128330:intron 45.0%
AGGCCAAAACATCAGGAAGT+TGG - chr1_3:57991013-57991032 Msa0128330:intron 45.0%
AAGGGACGTCATTCTGGATA+TGG - chr1_3:57991116-57991135 Msa0128330:intron 45.0%
GGTACTTGCACTATCAGGAT+AGG - chr1_3:57991515-57991534 Msa0128330:intron 45.0%
! CCTCATCCAAAGGATTTTGG+TGG + chr1_3:57991620-57991639 None:intergenic 45.0%
CCACCAAAATCCTTTGGATG+AGG - chr1_3:57991617-57991636 Msa0128330:intron 45.0%
! CCTCCTCATCCAAAGGATTT+TGG + chr1_3:57991623-57991642 None:intergenic 45.0%
CCAAAATCCTTTGGATGAGG+AGG - chr1_3:57991620-57991639 Msa0128330:intron 45.0%
!! GGAGAGTATTCACAAGTCCA+AGG - chr1_3:57991765-57991784 Msa0128330:intron 45.0%
! TGATCAGTTTGAGGCCAAGA+GGG - chr1_3:57991816-57991835 Msa0128330:intron 45.0%
AGAATAAGGCTAGCAGGGAA+AGG - chr1_3:57991842-57991861 Msa0128330:intron 45.0%
! CTCTCTGGTTCGATAACCTG+CGG + chr1_3:57990180-57990199 None:intergenic 50.0%
! GAACCAGAGAGAGAGTGTGA+GGG - chr1_3:57990189-57990208 Msa0128330:three_prime_UTR 50.0%
GGGAGAGAGAAAGAGAGAGA+TGG - chr1_3:57990209-57990228 Msa0128330:three_prime_UTR 50.0%
TGGTGGGAGCCTGTGATAAA+TGG - chr1_3:57990970-57990989 Msa0128330:intron 50.0%
TCGTTGCAGGCCAAAACATC+AGG - chr1_3:57991006-57991025 Msa0128330:intron 50.0%
GAGCGGGAGTGAATCTTAGT+TGG + chr1_3:57991065-57991084 None:intergenic 50.0%
TATGAAGGAGGCCAAGAGGA+AGG - chr1_3:57991097-57991116 Msa0128330:intron 50.0%
ATGAAGGAGGCCAAGAGGAA+GGG - chr1_3:57991098-57991117 Msa0128330:intron 50.0%
AGAATGACGTCCCTTCCTCT+TGG + chr1_3:57991111-57991130 None:intergenic 50.0%
AAGAGGAAGGGACGTCATTC+TGG - chr1_3:57991110-57991129 Msa0128330:intron 50.0%
! GAAAGGGTACAAGAGAGGCT+AGG - chr1_3:57991590-57991609 Msa0128330:intron 50.0%
!! TTTGCTTCGCAAGTACCGAG+AGG - chr1_3:57991660-57991679 Msa0128330:intron 50.0%
TCACAAGTCCAAGGCTGAGA+AGG - chr1_3:57991774-57991793 Msa0128330:intron 50.0%
! CTGATCAGTTTGAGGCCAAG+AGG - chr1_3:57991815-57991834 Msa0128330:intron 50.0%
!! AGCCTTATTCTTCGCCCTCT+TGG + chr1_3:57991833-57991852 None:intergenic 50.0%
GGCGAAGAATAAGGCTAGCA+GGG - chr1_3:57991837-57991856 Msa0128330:intron 50.0%
TGTATAGGGTCCAGGAGAGA+AGG - chr1_3:57992009-57992028 Msa0128330:intron 50.0%
! CTCTCTGGTTCGATAACCTG+CGG + chr1_3:57990180-57990199 None:intergenic 50.0%
! GAACCAGAGAGAGAGTGTGA+GGG - chr1_3:57990189-57990208 Msa0128330:three_prime_UTR 50.0%
GGGAGAGAGAAAGAGAGAGA+TGG - chr1_3:57990209-57990228 Msa0128330:three_prime_UTR 50.0%
TGGTGGGAGCCTGTGATAAA+TGG - chr1_3:57990970-57990989 Msa0128330:intron 50.0%
TCGTTGCAGGCCAAAACATC+AGG - chr1_3:57991006-57991025 Msa0128330:intron 50.0%
GAGCGGGAGTGAATCTTAGT+TGG + chr1_3:57991065-57991084 None:intergenic 50.0%
TATGAAGGAGGCCAAGAGGA+AGG - chr1_3:57991097-57991116 Msa0128330:intron 50.0%
ATGAAGGAGGCCAAGAGGAA+GGG - chr1_3:57991098-57991117 Msa0128330:intron 50.0%
AGAATGACGTCCCTTCCTCT+TGG + chr1_3:57991111-57991130 None:intergenic 50.0%
AAGAGGAAGGGACGTCATTC+TGG - chr1_3:57991110-57991129 Msa0128330:intron 50.0%
! GAAAGGGTACAAGAGAGGCT+AGG - chr1_3:57991590-57991609 Msa0128330:intron 50.0%
!! TTTGCTTCGCAAGTACCGAG+AGG - chr1_3:57991660-57991679 Msa0128330:intron 50.0%
TCACAAGTCCAAGGCTGAGA+AGG - chr1_3:57991774-57991793 Msa0128330:intron 50.0%
! CTGATCAGTTTGAGGCCAAG+AGG - chr1_3:57991815-57991834 Msa0128330:intron 50.0%
!! AGCCTTATTCTTCGCCCTCT+TGG + chr1_3:57991833-57991852 None:intergenic 50.0%
GGCGAAGAATAAGGCTAGCA+GGG - chr1_3:57991837-57991856 Msa0128330:intron 50.0%
TGTATAGGGTCCAGGAGAGA+AGG - chr1_3:57992009-57992028 Msa0128330:intron 50.0%
ATATAGCCTCCTTCCACCGC+AGG - chr1_3:57990161-57990180 Msa0128330:three_prime_UTR 55.0%
GTTCGATAACCTGCGGTGGA+AGG + chr1_3:57990173-57990192 None:intergenic 55.0%
! TCTGGTTCGATAACCTGCGG+TGG + chr1_3:57990177-57990196 None:intergenic 55.0%
! CGAACCAGAGAGAGAGTGTG+AGG - chr1_3:57990188-57990207 Msa0128330:three_prime_UTR 55.0%
TCTCCCTCACACTCTCTCTC+TGG + chr1_3:57990195-57990214 None:intergenic 55.0%
ACCACACTTGAGTACGCTGG+CGG + chr1_3:57990262-57990281 None:intergenic 55.0%
ACGACCACACTTGAGTACGC+TGG + chr1_3:57990265-57990284 None:intergenic 55.0%
AGCGTACTCAAGTGTGGTCG+TGG - chr1_3:57990264-57990283 Msa0128330:three_prime_UTR 55.0%
ACTCAAGTGTGGTCGTGGCA+AGG - chr1_3:57990269-57990288 Msa0128330:three_prime_UTR 55.0%
CTCCTTCATACGCCTAGCAC+GGG + chr1_3:57991087-57991106 None:intergenic 55.0%
CCTCCTTCATACGCCTAGCA+CGG + chr1_3:57991088-57991107 None:intergenic 55.0%
GGCTCCCCACCAAAATCCTT+TGG - chr1_3:57991611-57991630 Msa0128330:intron 55.0%
CACGCATCCTCCTCATCCAA+AGG + chr1_3:57991630-57991649 None:intergenic 55.0%
ACTTGCGAAGCAAACGCCTG+AGG + chr1_3:57991654-57991673 None:intergenic 55.0%
! CTCTCTAGCCTTCTCAGCCT+TGG + chr1_3:57991785-57991804 None:intergenic 55.0%
GGCCAAGAGGGCGAAGAATA+AGG - chr1_3:57991828-57991847 Msa0128330:intron 55.0%
GGGCGAAGAATAAGGCTAGC+AGG - chr1_3:57991836-57991855 Msa0128330:intron 55.0%
! AGCAAAGCGCTCTTCTCTGC+GGG + chr1_3:57991875-57991894 None:intergenic 55.0%
! GAGCAAAGCGCTCTTCTCTG+CGG + chr1_3:57991876-57991895 None:intergenic 55.0%
ATATAGCCTCCTTCCACCGC+AGG - chr1_3:57990161-57990180 Msa0128330:three_prime_UTR 55.0%
GTTCGATAACCTGCGGTGGA+AGG + chr1_3:57990173-57990192 None:intergenic 55.0%
! TCTGGTTCGATAACCTGCGG+TGG + chr1_3:57990177-57990196 None:intergenic 55.0%
! CGAACCAGAGAGAGAGTGTG+AGG - chr1_3:57990188-57990207 Msa0128330:three_prime_UTR 55.0%
TCTCCCTCACACTCTCTCTC+TGG + chr1_3:57990195-57990214 None:intergenic 55.0%
ACCACACTTGAGTACGCTGG+CGG + chr1_3:57990262-57990281 None:intergenic 55.0%
ACGACCACACTTGAGTACGC+TGG + chr1_3:57990265-57990284 None:intergenic 55.0%
AGCGTACTCAAGTGTGGTCG+TGG - chr1_3:57990264-57990283 Msa0128330:three_prime_UTR 55.0%
ACTCAAGTGTGGTCGTGGCA+AGG - chr1_3:57990269-57990288 Msa0128330:three_prime_UTR 55.0%
CTCCTTCATACGCCTAGCAC+GGG + chr1_3:57991087-57991106 None:intergenic 55.0%
CCTCCTTCATACGCCTAGCA+CGG + chr1_3:57991088-57991107 None:intergenic 55.0%
GGCTCCCCACCAAAATCCTT+TGG - chr1_3:57991611-57991630 Msa0128330:intron 55.0%
CACGCATCCTCCTCATCCAA+AGG + chr1_3:57991630-57991649 None:intergenic 55.0%
ACTTGCGAAGCAAACGCCTG+AGG + chr1_3:57991654-57991673 None:intergenic 55.0%
! CTCTCTAGCCTTCTCAGCCT+TGG + chr1_3:57991785-57991804 None:intergenic 55.0%
GGCCAAGAGGGCGAAGAATA+AGG - chr1_3:57991828-57991847 Msa0128330:intron 55.0%
GGGCGAAGAATAAGGCTAGC+AGG - chr1_3:57991836-57991855 Msa0128330:intron 55.0%
! AGCAAAGCGCTCTTCTCTGC+GGG + chr1_3:57991875-57991894 None:intergenic 55.0%
! GAGCAAAGCGCTCTTCTCTG+CGG + chr1_3:57991876-57991895 None:intergenic 55.0%
CGATAACCTGCGGTGGAAGG+AGG + chr1_3:57990170-57990189 None:intergenic 60.0%
AGTGTGGTCGTGGCAAGGTC+TGG - chr1_3:57990274-57990293 Msa0128330:three_prime_UTR 60.0%
TCATACGCCTAGCACGGGAG+CGG + chr1_3:57991082-57991101 None:intergenic 60.0%
CTCCCGTGCTAGGCGTATGA+AGG - chr1_3:57991082-57991101 Msa0128330:intron 60.0%
CCGTGCTAGGCGTATGAAGG+AGG - chr1_3:57991085-57991104 Msa0128330:intron 60.0%
GGCGTATGAAGGAGGCCAAG+AGG - chr1_3:57991093-57991112 Msa0128330:intron 60.0%
TGAGGAGGATGCGTGTCCTC+AGG - chr1_3:57991635-57991654 Msa0128330:intron 60.0%
GCTGCAGGAACCTTCTCTCC+TGG + chr1_3:57992022-57992041 None:intergenic 60.0%
! GGTTGCTGTTGCAGCTGGTG+CGG + chr1_3:57992056-57992075 None:intergenic 60.0%
! GACTGGGTTGCTGTTGCAGC+TGG + chr1_3:57992061-57992080 None:intergenic 60.0%
CGATAACCTGCGGTGGAAGG+AGG + chr1_3:57990170-57990189 None:intergenic 60.0%
AGTGTGGTCGTGGCAAGGTC+TGG - chr1_3:57990274-57990293 Msa0128330:three_prime_UTR 60.0%
TCATACGCCTAGCACGGGAG+CGG + chr1_3:57991082-57991101 None:intergenic 60.0%
CTCCCGTGCTAGGCGTATGA+AGG - chr1_3:57991082-57991101 Msa0128330:intron 60.0%
CCGTGCTAGGCGTATGAAGG+AGG - chr1_3:57991085-57991104 Msa0128330:intron 60.0%
GGCGTATGAAGGAGGCCAAG+AGG - chr1_3:57991093-57991112 Msa0128330:intron 60.0%
TGAGGAGGATGCGTGTCCTC+AGG - chr1_3:57991635-57991654 Msa0128330:intron 60.0%
GCTGCAGGAACCTTCTCTCC+TGG + chr1_3:57992022-57992041 None:intergenic 60.0%
! GGTTGCTGTTGCAGCTGGTG+CGG + chr1_3:57992056-57992075 None:intergenic 60.0%
! GACTGGGTTGCTGTTGCAGC+TGG + chr1_3:57992061-57992080 None:intergenic 60.0%
GCCGCCAGCGTACTCAAGTG+TGG - chr1_3:57990258-57990277 Msa0128330:three_prime_UTR 65.0%
TGGTCGTGGCAAGGTCTGGC+TGG - chr1_3:57990278-57990297 Msa0128330:three_prime_UTR 65.0%
TTCACTCCCGCTCCCGTGCT+AGG - chr1_3:57991072-57991091 Msa0128330:intron 65.0%
CATACGCCTAGCACGGGAGC+GGG + chr1_3:57991081-57991100 None:intergenic 65.0%
GCCGCCAGCGTACTCAAGTG+TGG - chr1_3:57990258-57990277 Msa0128330:three_prime_UTR 65.0%
TGGTCGTGGCAAGGTCTGGC+TGG - chr1_3:57990278-57990297 Msa0128330:three_prime_UTR 65.0%
TTCACTCCCGCTCCCGTGCT+AGG - chr1_3:57991072-57991091 Msa0128330:intron 65.0%
CATACGCCTAGCACGGGAGC+GGG + chr1_3:57991081-57991100 None:intergenic 65.0%
GCTGTTGCAGCTGGTGCGGC+TGG + chr1_3:57992052-57992071 None:intergenic 70.0%
GCTGTTGCAGCTGGTGCGGC+TGG + chr1_3:57992052-57992071 None:intergenic 70.0%
!! GCGGCTGGTGCTGCAGCTGC+AGG + chr1_3:57992037-57992056 None:intergenic 75.0%
!! GCGGCTGGTGCTGCAGCTGC+AGG + chr1_3:57992037-57992056 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 57990124 57992374 57990124 ID=Msa0128330;Name=Msa0128330
chr1_3 mRNA 57990124 57992374 57990124 ID=Msa0128330-mRNA-1;Parent=Msa0128330;Name=Msa0128330-mRNA-1;_AED=0.00;_eAED=0.00;_QI=104|1|1|1|1|1|5|188|213
chr1_3 exon 57990124 57990336 57990124 ID=Msa0128330-mRNA-1:exon:18613;Parent=Msa0128330-mRNA-1
chr1_3 exon 57990415 57990482 57990415 ID=Msa0128330-mRNA-1:exon:18612;Parent=Msa0128330-mRNA-1
chr1_3 exon 57990601 57990914 57990601 ID=Msa0128330-mRNA-1:exon:18611;Parent=Msa0128330-mRNA-1
chr1_3 exon 57991361 57991483 57991361 ID=Msa0128330-mRNA-1:exon:18610;Parent=Msa0128330-mRNA-1
chr1_3 exon 57992159 57992374 57992159 ID=Msa0128330-mRNA-1:exon:18609;Parent=Msa0128330-mRNA-1
chr1_3 five_prime_UTR 57992271 57992374 57992271 ID=Msa0128330-mRNA-1:five_prime_utr;Parent=Msa0128330-mRNA-1
chr1_3 CDS 57992159 57992270 57992159 ID=Msa0128330-mRNA-1:cds;Parent=Msa0128330-mRNA-1
chr1_3 CDS 57991361 57991483 57991361 ID=Msa0128330-mRNA-1:cds;Parent=Msa0128330-mRNA-1
chr1_3 CDS 57990601 57990914 57990601 ID=Msa0128330-mRNA-1:cds;Parent=Msa0128330-mRNA-1
chr1_3 CDS 57990415 57990482 57990415 ID=Msa0128330-mRNA-1:cds;Parent=Msa0128330-mRNA-1
chr1_3 CDS 57990312 57990336 57990312 ID=Msa0128330-mRNA-1:cds;Parent=Msa0128330-mRNA-1
chr1_3 three_prime_UTR 57990124 57990311 57990124 ID=Msa0128330-mRNA-1:three_prime_utr;Parent=Msa0128330-mRNA-1
Gene Sequence

>Msa0128330

ATGGTGTCGCTCAAACTTCAGAAGCGGCTCGCCGCCAGCGTACTCAAGTGTGGTCGTGGCAAGGTCTGGCTGGACCCTAATGAGTGCAATGAAATCTCCATGGCCAATTCACGCCAAAACATCAGGAAGTTGGTTAAGGATGGCTTCATTATCCGGAAGCCAACTAAGATTCACTCCCGCTCCCGTGCTAGGCGTATGAAGGAGGCCAAGAGGAAGGGACGTCATTCTGGATATGGTAAAAGAAAGGGTACAAGAGAGGCTAGGCTCCCCACCAAAATCCTTTGGATGAGGAGGATGCGTGTCCTCAGGCGTTTGCTTCGCAAGTACCGAGAGGCAAAGAAGATTGACAAACATATGTATCATGATATGTACATGAAGGTGAAGGGAAATGTCTTCAAGAACAAGAGAGTCCTTATGGAGAGTATTCACAAGTCCAAGGCTGAGAAGGCTAGAGAGAAGACATTATCTGATCAGTTTGAGGCCAAGAGGGCGAAGAATAAGGCTAGCAGGGAAAGGAAGCATGCCCGCAGAGAAGAGCGCTTTGCTCAAGGTCCAGGAGAGAAGGTTCCTGCAGCTGCAGCACCAGCCGCACCAGCTGCAACAGCAACCCAGTCCCAACCATCAAAGAAATCCAAGAAGTAA

Protein sequence

>Msa0128330

MVSLKLQKRLAASVLKCGRGKVWLDPNECNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYREAKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKHARREERFAQGPGEKVPAAAAPAAPAATATQSQPSKKSKK*