Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1432310 | XP_013446562.1 | 97.110 | 173 | 2 | 1 | 1 | 170 | 1 | 173 | 5.20e-120 | 346 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1432310 | sp|Q93VI3|RL171_ARATH | 86.127 | 173 | 21 | 1 | 1 | 170 | 1 | 173 | 4.91e-109 | 311 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1432310 | I3SHA1 | 97.110 | 173 | 2 | 1 | 1 | 170 | 1 | 173 | 2.48e-120 | 346 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001760 | Msa1432310 | 0.883426 | 4.532876e-71 | -8.615850e-47 |
| Msa0003330 | Msa1432310 | 0.866752 | 2.265793e-65 | -8.615850e-47 |
| Msa0027590 | Msa1432310 | 0.861964 | 7.086777e-64 | -8.615850e-47 |
| Msa0037230 | Msa1432310 | 0.800904 | 1.158015e-48 | -8.615850e-47 |
| Msa0040220 | Msa1432310 | 0.812978 | 3.229203e-51 | -8.615850e-47 |
| Msa0042510 | Msa1432310 | 0.839926 | 1.183211e-57 | -8.615850e-47 |
| Msa0075350 | Msa1432310 | 0.806473 | 8.086791e-50 | -8.615850e-47 |
| Msa0079560 | Msa1432310 | 0.844243 | 8.529733e-59 | -8.615850e-47 |
| Msa0086160 | Msa1432310 | 0.836703 | 8.012591e-57 | -8.615850e-47 |
| Msa0087910 | Msa1432310 | 0.838072 | 3.573842e-57 | -8.615850e-47 |
| Msa0094210 | Msa1432310 | 0.841023 | 6.110892e-58 | -8.615850e-47 |
| Msa0114600 | Msa1432310 | 0.816818 | 4.544661e-52 | -8.615850e-47 |
| Msa0116600 | Msa1432310 | 0.801086 | 1.062659e-48 | -8.615850e-47 |
| Msa1351020 | Msa1432310 | 0.936564 | 1.420104e-97 | -8.615850e-47 |
| Msa1358710 | Msa1432310 | 0.825061 | 5.754303e-54 | -8.615850e-47 |
| Msa1363910 | Msa1432310 | 0.845934 | 2.978294e-59 | -8.615850e-47 |
| Msa1363930 | Msa1432310 | 0.822148 | 2.765463e-53 | -8.615850e-47 |
| Msa1368920 | Msa1432310 | 0.804772 | 1.840299e-49 | -8.615850e-47 |
| Msa1385480 | Msa1432310 | 0.894614 | 2.090179e-75 | -8.615850e-47 |
| Msa1387750 | Msa1432310 | 0.832065 | 1.168971e-55 | -8.615850e-47 |
| Msa1390760 | Msa1432310 | 0.910518 | 1.712652e-82 | -8.615850e-47 |
| Msa1407550 | Msa1432310 | 0.901781 | 1.892405e-78 | -8.615850e-47 |
| Msa1413570 | Msa1432310 | 0.952359 | 2.874133e-110 | -8.615850e-47 |
| Msa1424570 | Msa1432310 | 0.834966 | 2.207810e-56 | -8.615850e-47 |
| Msa1432310 | Msa1446410 | 0.863185 | 2.981055e-64 | -8.615850e-47 |
| Msa1432310 | Msa1446510 | 0.847706 | 9.756317e-60 | -8.615850e-47 |
| Msa1432310 | Msa1449160 | 0.821527 | 3.850115e-53 | -8.615850e-47 |
| Msa1432310 | Msa1450560 | 0.848631 | 5.419772e-60 | -8.615850e-47 |
| Msa1432310 | Msa1463570 | 0.909393 | 5.983175e-82 | -8.615850e-47 |
| Msa1432310 | Msa1465700 | 0.854169 | 1.472318e-61 | -8.615850e-47 |
| Msa0602900 | Msa1432310 | 0.875302 | 3.428549e-68 | -8.615850e-47 |
| Msa0605600 | Msa1432310 | 0.826764 | 2.267446e-54 | -8.615850e-47 |
| Msa0605890 | Msa1432310 | 0.889373 | 2.567065e-73 | -8.615850e-47 |
| Msa0609120 | Msa1432310 | 0.854926 | 8.890517e-62 | -8.615850e-47 |
| Msa0619230 | Msa1432310 | 0.911959 | 3.366163e-83 | -8.615850e-47 |
| Msa0621190 | Msa1432310 | 0.835665 | 1.470344e-56 | -8.615850e-47 |
| Msa0622230 | Msa1432310 | 0.806265 | 8.945009e-50 | -8.615850e-47 |
| Msa0643960 | Msa1432310 | 0.876034 | 1.923803e-68 | -8.615850e-47 |
| Msa0649890 | Msa1432310 | 0.851972 | 6.262791e-61 | -8.615850e-47 |
| Msa0656450 | Msa1432310 | 0.947313 | 8.572148e-106 | -8.615850e-47 |
| Msa0663400 | Msa1432310 | 0.834366 | 3.124051e-56 | -8.615850e-47 |
| Msa0686550 | Msa1432310 | 0.829710 | 4.420197e-55 | -8.615850e-47 |
| Msa0691760 | Msa1432310 | 0.880732 | 4.307625e-70 | -8.615850e-47 |
| Msa0694400 | Msa1432310 | 0.903635 | 2.828788e-79 | -8.615850e-47 |
| Msa0700370 | Msa1432310 | 0.842841 | 2.020857e-58 | -8.615850e-47 |
| Msa0704860 | Msa1432310 | 0.894815 | 1.728455e-75 | -8.615850e-47 |
| Msa0705800 | Msa1432310 | 0.808346 | 3.240355e-50 | -8.615850e-47 |
| Msa0708630 | Msa1432310 | 0.867743 | 1.092589e-65 | -8.615850e-47 |
| Msa0741510 | Msa1432310 | 0.825524 | 4.473575e-54 | -8.615850e-47 |
| Msa0748350 | Msa1432310 | 0.821849 | 3.244986e-53 | -8.615850e-47 |
| Msa0759660 | Msa1432310 | 0.807967 | 3.902505e-50 | -8.615850e-47 |
| Msa0788380 | Msa1432310 | 0.809264 | 2.061918e-50 | -8.615850e-47 |
| Msa0790450 | Msa1432310 | 0.845055 | 5.154083e-59 | -8.615850e-47 |
| Msa0838070 | Msa1432310 | 0.827187 | 1.796441e-54 | -8.615850e-47 |
| Msa0123290 | Msa1432310 | 0.829414 | 5.216815e-55 | -8.615850e-47 |
| Msa0127230 | Msa1432310 | 0.832297 | 1.024430e-55 | -8.615850e-47 |
| Msa0128330 | Msa1432310 | 0.916079 | 2.741704e-85 | -8.615850e-47 |
| Msa0128750 | Msa1432310 | 0.800340 | 1.509302e-48 | -8.615850e-47 |
| Msa0132460 | Msa1432310 | 0.867014 | 1.869603e-65 | -8.615850e-47 |
| Msa0134580 | Msa1432310 | 0.862387 | 5.255183e-64 | -8.615850e-47 |
| Msa0146610 | Msa1432310 | 0.817636 | 2.976118e-52 | -8.615850e-47 |
| Msa0167860 | Msa1432310 | 0.889971 | 1.500782e-73 | -8.615850e-47 |
| Msa0168320 | Msa1432310 | 0.860805 | 1.598907e-63 | -8.615850e-47 |
| Msa0174580 | Msa1432310 | 0.911315 | 6.985820e-83 | -8.615850e-47 |
| Msa0182050 | Msa1432310 | 0.869870 | 2.238227e-66 | -8.615850e-47 |
| Msa0182100 | Msa1432310 | 0.873257 | 1.691430e-67 | -8.615850e-47 |
| Msa0188740 | Msa1432310 | 0.817723 | 2.844784e-52 | -8.615850e-47 |
| Msa0191450 | Msa1432310 | 0.856762 | 2.583727e-62 | -8.615850e-47 |
| Msa0191550 | Msa1432310 | 0.869168 | 3.790690e-66 | -8.615850e-47 |
| Msa0192300 | Msa1432310 | 0.882199 | 1.272365e-70 | -8.615850e-47 |
| Msa0194940 | Msa1432310 | 0.841776 | 3.871014e-58 | -8.615850e-47 |
| Msa0195030 | Msa1432310 | 0.809243 | 2.083827e-50 | -8.615850e-47 |
| Msa0225350 | Msa1432310 | 0.802778 | 4.773897e-49 | -8.615850e-47 |
| Msa0233550 | Msa1432310 | 0.850151 | 2.043725e-60 | -8.615850e-47 |
| Msa0234850 | Msa1432310 | 0.803933 | 2.751949e-49 | -8.615850e-47 |
| Msa0235050 | Msa1432310 | 0.813325 | 2.710790e-51 | -8.615850e-47 |
| Msa0237180 | Msa1432310 | 0.800409 | 1.461067e-48 | -8.615850e-47 |
| Msa1227350 | Msa1432310 | 0.826252 | 3.004689e-54 | -8.615850e-47 |
| Msa1235950 | Msa1432310 | 0.858543 | 7.665921e-63 | -8.615850e-47 |
| Msa1235980 | Msa1432310 | 0.867016 | 1.866147e-65 | -8.615850e-47 |
| Msa1237040 | Msa1432310 | 0.850765 | 1.374415e-60 | -8.615850e-47 |
| Msa1245270 | Msa1432310 | 0.801720 | 7.881864e-49 | -8.615850e-47 |
| Msa1255830 | Msa1432310 | 0.807446 | 5.035079e-50 | -8.615850e-47 |
| Msa1255850 | Msa1432310 | 0.824194 | 9.212902e-54 | -8.615850e-47 |
| Msa1258540 | Msa1432310 | 0.831825 | 1.340336e-55 | -8.615850e-47 |
| Msa1270640 | Msa1432310 | 0.827436 | 1.566600e-54 | -8.615850e-47 |
| Msa1270710 | Msa1432310 | 0.826738 | 2.300987e-54 | -8.615850e-47 |
| Msa1284060 | Msa1432310 | 0.813323 | 2.712517e-51 | -8.615850e-47 |
| Msa1284800 | Msa1432310 | 0.809568 | 1.774742e-50 | -8.615850e-47 |
| Msa1296090 | Msa1432310 | 0.848771 | 4.955206e-60 | -8.615850e-47 |
| Msa1311400 | Msa1432310 | 0.802387 | 5.746311e-49 | -8.615850e-47 |
| Msa1316100 | Msa1432310 | 0.806326 | 8.686466e-50 | -8.615850e-47 |
| Msa1317390 | Msa1432310 | 0.873389 | 1.526875e-67 | -8.615850e-47 |
| Msa1330730 | Msa1432310 | 0.801725 | 7.863124e-49 | -8.615850e-47 |
| Msa1333370 | Msa1432310 | 0.806874 | 6.655841e-50 | -8.615850e-47 |
| Msa0371490 | Msa1432310 | 0.873407 | 1.506167e-67 | -8.615850e-47 |
| Msa0373350 | Msa1432310 | 0.816250 | 6.091471e-52 | -8.615850e-47 |
| Msa0376850 | Msa1432310 | 0.864432 | 1.221147e-64 | -8.615850e-47 |
| Msa0377520 | Msa1432310 | 0.842686 | 2.221816e-58 | -8.615850e-47 |
| Msa0382670 | Msa1432310 | 0.820749 | 5.818751e-53 | -8.615850e-47 |
| Msa0387290 | Msa1432310 | 0.818199 | 2.220674e-52 | -8.615850e-47 |
| Msa0388520 | Msa1432310 | 0.840762 | 7.153182e-58 | -8.615850e-47 |
| Msa0416470 | Msa1432310 | 0.803756 | 2.994109e-49 | -8.615850e-47 |
| Msa0426090 | Msa1432310 | 0.862163 | 6.157962e-64 | -8.615850e-47 |
| Msa0426250 | Msa1432310 | 0.867025 | 1.854102e-65 | -8.615850e-47 |
| Msa0426940 | Msa1432310 | 0.807626 | 4.612033e-50 | -8.615850e-47 |
| Msa0450150 | Msa1432310 | 0.838618 | 2.583594e-57 | -8.615850e-47 |
| Msa0472480 | Msa1432310 | 0.856564 | 2.953902e-62 | -8.615850e-47 |
| Msa0481520 | Msa1432310 | 0.857582 | 1.479773e-62 | -8.615850e-47 |
| Msa0481800 | Msa1432310 | 0.821556 | 3.791244e-53 | -8.615850e-47 |
| Msa0482560 | Msa1432310 | 0.824784 | 6.689319e-54 | -8.615850e-47 |
| Msa1037290 | Msa1432310 | 0.803147 | 4.005034e-49 | -8.615850e-47 |
| Msa1041680 | Msa1432310 | 0.825738 | 3.980140e-54 | -8.615850e-47 |
| Msa1068660 | Msa1432310 | 0.816370 | 5.727442e-52 | -8.615850e-47 |
| Msa1080390 | Msa1432310 | 0.822736 | 2.018941e-53 | -8.615850e-47 |
| Msa1082050 | Msa1432310 | 0.824600 | 7.391166e-54 | -8.615850e-47 |
| Msa1093500 | Msa1432310 | 0.839075 | 1.967708e-57 | -8.615850e-47 |
| Msa0239420 | Msa1432310 | 0.836632 | 8.351206e-57 | -8.615850e-47 |
| Msa0270160 | Msa1432310 | 0.833682 | 4.634036e-56 | -8.615850e-47 |
| Msa0274940 | Msa1432310 | 0.812991 | 3.208739e-51 | -8.615850e-47 |
| Msa0277600 | Msa1432310 | 0.887932 | 9.234689e-73 | -8.615850e-47 |
| Msa0281370 | Msa1432310 | 0.829784 | 4.239868e-55 | -8.615850e-47 |
| Msa0301250 | Msa1432310 | 0.886538 | 3.134895e-72 | -8.615850e-47 |
| Msa0313060 | Msa1432310 | 0.894570 | 2.178781e-75 | -8.615850e-47 |
| Msa0315430 | Msa1432310 | 0.892776 | 1.161652e-74 | -8.615850e-47 |
| Msa0315660 | Msa1432310 | 0.811262 | 7.646374e-51 | -8.615850e-47 |
| Msa1125900 | Msa1432310 | 0.826748 | 2.288276e-54 | -8.615850e-47 |
| Msa1126100 | Msa1432310 | 0.823145 | 1.621899e-53 | -8.615850e-47 |
| Msa1126690 | Msa1432310 | 0.862437 | 5.071068e-64 | -8.615850e-47 |
| Msa1144610 | Msa1432310 | 0.814976 | 1.171105e-51 | -8.615850e-47 |
| Msa1144630 | Msa1432310 | 0.819220 | 1.302079e-52 | -8.615850e-47 |
| Msa1156830 | Msa1432310 | 0.810032 | 1.409863e-50 | -8.615850e-47 |
| Msa1164150 | Msa1432310 | 0.840708 | 7.390799e-58 | -8.615850e-47 |
| Msa1165640 | Msa1432310 | 0.806429 | 8.261759e-50 | -8.615850e-47 |
| Msa1166570 | Msa1432310 | 0.825415 | 4.745752e-54 | -8.615850e-47 |
| Msa1180000 | Msa1432310 | 0.847019 | 1.506959e-59 | -8.615850e-47 |
| Msa0485220 | Msa1432310 | 0.800375 | 1.484553e-48 | -8.615850e-47 |
| Msa0511760 | Msa1432310 | 0.876488 | 1.342355e-68 | -8.615850e-47 |
| Msa0516830 | Msa1432310 | 0.864227 | 1.415305e-64 | -8.615850e-47 |
| Msa0517480 | Msa1432310 | 0.846737 | 1.800095e-59 | -8.615850e-47 |
| Msa0529900 | Msa1432310 | 0.823187 | 1.585003e-53 | -8.615850e-47 |
| Msa0547920 | Msa1432310 | 0.883211 | 5.437915e-71 | -8.615850e-47 |
| Msa0573550 | Msa1432310 | 0.911838 | 3.862688e-83 | -8.615850e-47 |
| Msa0574780 | Msa1432310 | 0.890762 | 7.345660e-74 | -8.615850e-47 |
| Msa0578010 | Msa1432310 | 0.922540 | 8.614653e-89 | -8.615850e-47 |
| Msa0579830 | Msa1432310 | 0.840223 | 9.897474e-58 | -8.615850e-47 |
| Msa0582070 | Msa1432310 | 0.827336 | 1.655053e-54 | -8.615850e-47 |
| Msa0585570 | Msa1432310 | 0.822093 | 2.848500e-53 | -8.615850e-47 |
| Msa0597240 | Msa1432310 | 0.842776 | 2.103523e-58 | -8.615850e-47 |
| Msa0902730 | Msa1432310 | 0.856705 | 2.684866e-62 | -8.615850e-47 |
| Msa0929680 | Msa1432310 | 0.816722 | 4.775892e-52 | -8.615850e-47 |
| Msa0929700 | Msa1432310 | 0.887032 | 2.037323e-72 | -8.615850e-47 |
| Msa0930100 | Msa1432310 | 0.822548 | 2.233926e-53 | -8.615850e-47 |
| Msa0930360 | Msa1432310 | 0.853326 | 2.572826e-61 | -8.615850e-47 |
| Msa0930790 | Msa1432310 | 0.899324 | 2.218293e-77 | -8.615850e-47 |
| Msa0930890 | Msa1432310 | 0.852098 | 5.767541e-61 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1432310 | MtrunA17_Chr8g0377301 | 97.110 | 173 | 2 | 1 | 1 | 170 | 1 | 173 | 4.78e-124 | 346 |
| Msa1432310 | MtrunA17_Chr3g0122641 | 94.220 | 173 | 7 | 1 | 1 | 170 | 1 | 173 | 7.59e-122 | 340 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1432310 | AT1G27400.1 | 86.127 | 173 | 21 | 1 | 1 | 170 | 1 | 173 | 4.99e-110 | 311 |
| Msa1432310 | AT1G67430.1 | 85.549 | 173 | 22 | 1 | 1 | 170 | 1 | 173 | 8.25e-110 | 310 |
| Msa1432310 | AT1G67430.2 | 62.428 | 173 | 18 | 2 | 1 | 170 | 1 | 129 | 5.86e-67 | 200 |
Find 64 sgRNAs with CRISPR-Local
Find 251 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCATTAGAGTGTCTATTCT+TGG | 0.210303 | tig0027057:-50054 | None:intergenic |
| TCTTCTTGCTTGCTGCCAAC+TGG | 0.224595 | tig0027057:-50625 | None:intergenic |
| CTGACCTCAGAGTTCATTTC+AGG | 0.249157 | tig0027057:+47008 | Msa1432310:CDS |
| TTACACTTGGTAGGGTTATC+AGG | 0.253880 | tig0027057:-46864 | None:intergenic |
| ATCATTAAATAGATATTTCT+TGG | 0.256668 | tig0027057:+50861 | Msa1432310:three_prime_UTR |
| TATTGCTGCCTTGTACTCTT+AGG | 0.257568 | tig0027057:+50670 | Msa1432310:three_prime_UTR |
| GCCCTCTATCGTTTATTTGC+AGG | 0.259687 | tig0027057:+46694 | Msa1432310:five_prime_UTR |
| TGCCCTTGACCAAGGCTAAA+AGG | 0.311470 | tig0027057:+49952 | Msa1432310:CDS |
| TATAAAATAGAACATAGTTT+TGG | 0.317872 | tig0027057:-50745 | None:intergenic |
| TAGAGTGTCTATTCTTGGCC+TGG | 0.328430 | tig0027057:-50049 | None:intergenic |
| TACTTTCTAGGTCAAAGGTT+TGG | 0.358411 | tig0027057:+50234 | Msa1432310:intron |
| GACGTTTCTGTCGTGGTGTT+GGG | 0.366723 | tig0027057:+50018 | Msa1432310:CDS |
| CTTCTTGCTTGCTGCCAACT+GGG | 0.392921 | tig0027057:-50624 | None:intergenic |
| CTTGCTGCCAACTGGGACTC+CGG | 0.394551 | tig0027057:-50617 | None:intergenic |
| GCTTCTGTGCTTGATTGACT+TGG | 0.407265 | tig0027057:-50285 | None:intergenic |
| AGAGTGTCTATTCTTGGCCT+GGG | 0.411697 | tig0027057:-50048 | None:intergenic |
| AGACGTTTCTGTCGTGGTGT+TGG | 0.422500 | tig0027057:+50017 | Msa1432310:CDS |
| TGACGACGGCGTTTGATGAC+TGG | 0.430351 | tig0027057:-46719 | None:intergenic |
| GGGAAACTGCCTTTGCCATC+AGG | 0.434248 | tig0027057:+49925 | Msa1432310:intron |
| CAAGTCAGCGAAGTTTATCC+TGG | 0.440074 | tig0027057:+50094 | Msa1432310:CDS |
| AGACGTTCTTGCACACAAAC+AGG | 0.445626 | tig0027057:+49983 | Msa1432310:CDS |
| ATAAACTTCGCTGACTTGAC+TGG | 0.446611 | tig0027057:-50089 | None:intergenic |
| GAGGTCAGCACCACGAGCCT+TGG | 0.456110 | tig0027057:-46993 | None:intergenic |
| GTCAGCACCACGAGCCTTGG+TGG | 0.461811 | tig0027057:-46990 | None:intergenic |
| TGGTGTTGGGAGGACAGCCC+AGG | 0.463667 | tig0027057:+50031 | Msa1432310:CDS |
| GCCAAGAATAGACACTCTAA+TGG | 0.473513 | tig0027057:+50053 | Msa1432310:CDS |
| AAGAAGAGGGCTTAAACTCT+AGG | 0.479337 | tig0027057:+50641 | Msa1432310:exon |
| CCATTCAGACGTTTCTGTCG+TGG | 0.491424 | tig0027057:+50011 | Msa1432310:CDS |
| CCACGACAGAAACGTCTGAA+TGG | 0.493513 | tig0027057:-50011 | None:intergenic |
| GTCATCAAACGCCGTCGTCA+TGG | 0.494846 | tig0027057:+46722 | Msa1432310:exon |
| GACCAAGGCTAAAAGGTACT+TGG | 0.501746 | tig0027057:+49959 | Msa1432310:CDS |
| AGAAGTTGCTTACACTTGGT+AGG | 0.508381 | tig0027057:-46873 | None:intergenic |
| AACCTGCAAATAAACGATAG+AGG | 0.508440 | tig0027057:-46696 | None:intergenic |
| AACGATAGAGGGCTGAGAGC+AGG | 0.508536 | tig0027057:-46684 | None:intergenic |
| TAATCTACTTTCTAGGTCAA+AGG | 0.515922 | tig0027057:+50229 | Msa1432310:intron |
| ACATACGGTTGATTCTTCCA+TGG | 0.528331 | tig0027057:-50330 | None:intergenic |
| AATTGTCAAACATGATTCAC+CGG | 0.528999 | tig0027057:+50816 | Msa1432310:three_prime_UTR |
| CTGCATTCTTCAGCAAATCC+AGG | 0.531822 | tig0027057:-50112 | None:intergenic |
| GAAGTTGCTTACACTTGGTA+GGG | 0.534908 | tig0027057:-46872 | None:intergenic |
| GGAAGAGGCGGTTCAGAAAG+AGG | 0.535941 | tig0027057:+50494 | Msa1432310:CDS |
| ATTAAATAGATATTTCTTGG+TGG | 0.542034 | tig0027057:+50864 | Msa1432310:three_prime_UTR |
| CATACGGTTGATTCTTCCAT+GGG | 0.548316 | tig0027057:-50329 | None:intergenic |
| CGCAGAACATACAGAGCCCA+TGG | 0.557011 | tig0027057:+50313 | Msa1432310:CDS |
| GTTGGCAGCAAGCAAGAAGA+GGG | 0.565267 | tig0027057:+50628 | Msa1432310:CDS |
| ACCTGCAAATAAACGATAGA+GGG | 0.576091 | tig0027057:-46695 | None:intergenic |
| AGCAGGAATGAAGTGAGGTA+TGG | 0.580970 | tig0027057:-46667 | None:intergenic |
| GGGCAACTTCCTGATGGCAA+AGG | 0.587242 | tig0027057:-49934 | None:intergenic |
| GGTCAAGGGCAACTTCCTGA+TGG | 0.590928 | tig0027057:-49940 | None:intergenic |
| AGTTGGCAGCAAGCAAGAAG+AGG | 0.597913 | tig0027057:+50627 | Msa1432310:CDS |
| TGACAAGACCTAAGAGTACA+AGG | 0.608536 | tig0027057:-50678 | None:intergenic |
| GTTTCTGTCGTGGTGTTGGG+AGG | 0.609236 | tig0027057:+50021 | Msa1432310:CDS |
| AAAATCAACTCAATGTGGCA+AGG | 0.612514 | tig0027057:-50462 | None:intergenic |
| TTTCCAGCCGGAGTCCCAGT+TGG | 0.613767 | tig0027057:+50610 | Msa1432310:intron |
| TTTATCTGAAAAGGAAGAGG+CGG | 0.620263 | tig0027057:+50482 | Msa1432310:CDS |
| ACAGAAACGTCTGAATGGAA+TGG | 0.621533 | tig0027057:-50006 | None:intergenic |
| CAGATAAAATCAACTCAATG+TGG | 0.623662 | tig0027057:-50467 | None:intergenic |
| CAGGAAGTTGCCCTTGACCA+AGG | 0.624452 | tig0027057:+49944 | Msa1432310:CDS |
| GACACTCTAATGGACAAGGA+AGG | 0.649233 | tig0027057:+50063 | Msa1432310:CDS |
| ACTCTAATGGACAAGGAAGG+TGG | 0.651493 | tig0027057:+50066 | Msa1432310:CDS |
| TATGCAGCCACCAAGGCTCG+TGG | 0.658154 | tig0027057:+46983 | Msa1432310:intron |
| CTGAGAGCAGGAATGAAGTG+AGG | 0.665047 | tig0027057:-46672 | None:intergenic |
| AATAGACACTCTAATGGACA+AGG | 0.667364 | tig0027057:+50059 | Msa1432310:CDS |
| GTTACCTGAAATGAACTCTG+AGG | 0.683668 | tig0027057:-47012 | None:intergenic |
| TTCTAAGCTTACCATGACGA+CGG | 0.692432 | tig0027057:-46733 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGTTTTATTATTATAGATTA+TGG | + | tig0027057:48949-48968 | Msa1432310:intron | 10.0% |
| !! | ATCATTAATAAAACATAATT+GGG | - | tig0027057:49809-49828 | None:intergenic | 10.0% |
| !! | AATCATTAATAAAACATAAT+TGG | - | tig0027057:49810-49829 | None:intergenic | 10.0% |
| !! | TTCATAAAAAAATCATATAA+AGG | - | tig0027057:49865-49884 | None:intergenic | 10.0% |
| !!! | ATTTTATAAGGTAATAGATA+AGG | + | tig0027057:47281-47300 | Msa1432310:intron | 15.0% |
| !! | TATATTAATTGAAATGAATG+AGG | - | tig0027057:48127-48146 | None:intergenic | 15.0% |
| !!! | ATTTAGTTTATAGATGAAAA+AGG | + | tig0027057:48987-49006 | Msa1432310:intron | 15.0% |
| !!! | TAATAACCATGATTTTTTTA+AGG | + | tig0027057:49059-49078 | Msa1432310:intron | 15.0% |
| !!! | ATATAAAACTCATTGTTATT+GGG | + | tig0027057:49255-49274 | Msa1432310:intron | 15.0% |
| !! | TATATAATCAAGTAATAATG+AGG | - | tig0027057:49494-49513 | None:intergenic | 15.0% |
| !! | TATTGCTTATTTAATTGTTT+CGG | + | tig0027057:50545-50564 | Msa1432310:intron | 15.0% |
| !!! | TATAAAATAGAACATAGTTT+TGG | - | tig0027057:50748-50767 | None:intergenic | 15.0% |
| !!! | TCTATTTAATGATTTTATCA+CGG | - | tig0027057:50854-50873 | None:intergenic | 15.0% |
| !! | ATCATTAAATAGATATTTCT+TGG | + | tig0027057:50861-50880 | Msa1432310:three_prime_UTR | 15.0% |
| !!! | TGTTTGTTTTTCGAATTTTT+AGG | + | tig0027057:46824-46843 | Msa1432310:intron | 20.0% |
| !!! | TATTGTGTTTTAAGCATAAT+TGG | + | tig0027057:46903-46922 | Msa1432310:intron | 20.0% |
| !! | TACAACAAAAAATGAGTATT+AGG | - | tig0027057:47099-47118 | None:intergenic | 20.0% |
| !! | AGAAATGTAGTTTGAAAATT+TGG | + | tig0027057:47401-47420 | Msa1432310:intron | 20.0% |
| !!! | TAAAACTTTTCTATGTAATG+GGG | - | tig0027057:47577-47596 | None:intergenic | 20.0% |
| !!! | CTAAAACTTTTCTATGTAAT+GGG | - | tig0027057:47578-47597 | None:intergenic | 20.0% |
| !!! | ACTAAAACTTTTCTATGTAA+TGG | - | tig0027057:47579-47598 | None:intergenic | 20.0% |
| !! | TACTAATTATTGATCATTGA+TGG | + | tig0027057:48023-48042 | Msa1432310:intron | 20.0% |
| !! | TTGAAGTTAATTGATATACT+TGG | + | tig0027057:48149-48168 | Msa1432310:intron | 20.0% |
| !!! | ATATAAAACCCATTGTTATT+GGG | + | tig0027057:48246-48265 | Msa1432310:intron | 20.0% |
| !! | GAAACCTATAATCATAAAAA+GGG | - | tig0027057:48447-48466 | None:intergenic | 20.0% |
| !! | TGAAACCTATAATCATAAAA+AGG | - | tig0027057:48448-48467 | None:intergenic | 20.0% |
| !! | ATGATTATAGGTTTCATAAA+TGG | + | tig0027057:48452-48471 | Msa1432310:intron | 20.0% |
| !!! | ATATATAACCCATTGTTATT+GGG | + | tig0027057:48858-48877 | Msa1432310:intron | 20.0% |
| !! | AGAACCTTAAATCATAAAAA+GGG | - | tig0027057:49094-49113 | None:intergenic | 20.0% |
| !! | GATATAAAACTCATTGTTAT+TGG | + | tig0027057:49254-49273 | Msa1432310:intron | 20.0% |
| !! | TACTTGATTATATAAGACAT+AGG | + | tig0027057:49500-49519 | Msa1432310:intron | 20.0% |
| !!! | ATCATAAGATTTGAAACATA+CGG | - | tig0027057:50348-50367 | None:intergenic | 20.0% |
| !!! | GTTCTATTTTATACTGAATT+TGG | + | tig0027057:50755-50774 | Msa1432310:three_prime_UTR | 20.0% |
| !! | ATTAAATAGATATTTCTTGG+TGG | + | tig0027057:50864-50883 | Msa1432310:three_prime_UTR | 20.0% |
| ! | AACAAAATTGACAATGACTA+GGG | - | tig0027057:47319-47338 | None:intergenic | 25.0% |
| !! | TAGTCATTGTCAATTTTGTT+GGG | + | tig0027057:47319-47338 | Msa1432310:intron | 25.0% |
| ! | ATGTAGTTTGAAAATTTGGA+AGG | + | tig0027057:47405-47424 | Msa1432310:intron | 25.0% |
| ! | TTGAAAATTTGGAAGGAAAA+AGG | + | tig0027057:47412-47431 | Msa1432310:intron | 25.0% |
| ! | ACAATAGATATAGTGAAACT+TGG | + | tig0027057:47618-47637 | Msa1432310:intron | 25.0% |
| !! | ATGTTATTTGAATGACAAAC+TGG | - | tig0027057:47714-47733 | None:intergenic | 25.0% |
| !!! | GGTTTTCTCTATATTTTAAC+TGG | - | tig0027057:47801-47820 | None:intergenic | 25.0% |
| ! | TGAACCTTAAATCATTACAT+GGG | - | tig0027057:47953-47972 | None:intergenic | 25.0% |
| !! | ATTTAAGGTTCACTAAATGA+GGG | + | tig0027057:47961-47980 | Msa1432310:intron | 25.0% |
| ! | CCAAACAATCTAAGTAATAA+GGG | - | tig0027057:48092-48111 | None:intergenic | 25.0% |
| ! | ACCAAACAATCTAAGTAATA+AGG | - | tig0027057:48093-48112 | None:intergenic | 25.0% |
| ! | GATATAAAACCCATTGTTAT+TGG | + | tig0027057:48245-48264 | Msa1432310:intron | 25.0% |
| !! | AGTTCCCTTTTTATGATTAT+AGG | + | tig0027057:48440-48459 | Msa1432310:intron | 25.0% |
| ! | GATATATAACCCATTGTTAT+TGG | + | tig0027057:48857-48876 | Msa1432310:intron | 25.0% |
| ! | CAGAACCTTAAATCATAAAA+AGG | - | tig0027057:49095-49114 | None:intergenic | 25.0% |
| !! | TTTTATATCCCTGAATGTTA+CGG | - | tig0027057:49243-49262 | None:intergenic | 25.0% |
| ! | ATGTAATATTGAACTGGAAA+AGG | - | tig0027057:49541-49560 | None:intergenic | 25.0% |
| !! | TTTTCCAGTTCAATATTACA+TGG | + | tig0027057:49540-49559 | Msa1432310:intron | 25.0% |
| !! | TTTTCCATGTAATATTGAAC+TGG | - | tig0027057:49547-49566 | None:intergenic | 25.0% |
| ! | CTCTCTAAACAATTATTGTT+TGG | + | tig0027057:49761-49780 | Msa1432310:intron | 25.0% |
| !!! | TGTGTTTTTTTTTGAAAGTG+TGG | + | tig0027057:50391-50410 | Msa1432310:intron | 25.0% |
| !!! | TGAGTTGATTTTATCTGAAA+AGG | + | tig0027057:50473-50492 | Msa1432310:CDS | 25.0% |
| TTAGGTAACACAAATTGAAC+TGG | - | tig0027057:47081-47100 | None:intergenic | 30.0% | |
| GAACTTATGTATTTCTCTGA+TGG | + | tig0027057:47144-47163 | Msa1432310:intron | 30.0% | |
| AAGCTAAAAACAAGCTTGTA+AGG | + | tig0027057:47181-47200 | Msa1432310:intron | 30.0% | |
| AATAGATAAGGCAATCCAAA+CGG | + | tig0027057:47293-47312 | Msa1432310:intron | 30.0% | |
| CAACAAAATTGACAATGACT+AGG | - | tig0027057:47320-47339 | None:intergenic | 30.0% | |
| ! | CTAGTCATTGTCAATTTTGT+TGG | + | tig0027057:47318-47337 | Msa1432310:intron | 30.0% |
| !! | TTGTTGTTTATGTTGTACTG+AGG | + | tig0027057:47684-47703 | Msa1432310:intron | 30.0% |
| GAAACTAGTGTCTAATAGAT+GGG | - | tig0027057:47822-47841 | None:intergenic | 30.0% | |
| ! | CATCTATTAGACACTAGTTT+CGG | + | tig0027057:47821-47840 | Msa1432310:intron | 30.0% |
| ! | AGATAATAGCCATGGTTTTT+GGG | + | tig0027057:47916-47935 | Msa1432310:intron | 30.0% |
| AACTCCCATGTAATGATTTA+AGG | + | tig0027057:47946-47965 | Msa1432310:intron | 30.0% | |
| GTGAACCTTAAATCATTACA+TGG | - | tig0027057:47954-47973 | None:intergenic | 30.0% | |
| ! | GATTTAAGGTTCACTAAATG+AGG | + | tig0027057:47960-47979 | Msa1432310:intron | 30.0% |
| TGTTTCATTTAGCATCTTAG+TGG | + | tig0027057:48051-48070 | Msa1432310:intron | 30.0% | |
| CCCTTATTACTTAGATTGTT+TGG | + | tig0027057:48089-48108 | Msa1432310:intron | 30.0% | |
| ! | TTTTATATCCCTGAAGGTTA+CGG | - | tig0027057:48234-48253 | None:intergenic | 30.0% |
| AATGTACCTCGTTAAATTCA+GGG | + | tig0027057:48413-48432 | Msa1432310:intron | 30.0% | |
| ACCTCATTACTTAGATTGTT+TGG | + | tig0027057:48595-48614 | Msa1432310:intron | 30.0% | |
| ACCAAACAATCTAAGTAATG+AGG | - | tig0027057:48599-48618 | None:intergenic | 30.0% | |
| ACCTCATTACTTAGATTGTT+TGG | + | tig0027057:48595-48614 | Msa1432310:intron | 30.0% | |
| ACCAAACAATCTAAGTAATG+AGG | - | tig0027057:48599-48618 | None:intergenic | 30.0% | |
| TTGAAAAAAAAGCAGTGGTT+TGG | + | tig0027057:48800-48819 | Msa1432310:intron | 30.0% | |
| TTATATATCCCTGAAGGTTA+CGG | - | tig0027057:48846-48865 | None:intergenic | 30.0% | |
| TTTATAGATGAAAAAGGCAG+TGG | + | tig0027057:48993-49012 | Msa1432310:intron | 30.0% | |
| GGTTCACCTTAAAAAAATCA+TGG | - | tig0027057:49068-49087 | None:intergenic | 30.0% | |
| CTTAAATCATAAAAAGGGAG+AGG | - | tig0027057:49089-49108 | None:intergenic | 30.0% | |
| ! | CTCTCCCTTTTTATGATTTA+AGG | + | tig0027057:49087-49106 | Msa1432310:intron | 30.0% |
| TTTATATCCCTGAATGTTAC+GGG | - | tig0027057:49242-49261 | None:intergenic | 30.0% | |
| ! | TGATATGTGTTGACATGTAT+TGG | + | tig0027057:49396-49415 | Msa1432310:intron | 30.0% |
| ATTACATGGAAAAGACGTAT+AGG | + | tig0027057:49554-49573 | Msa1432310:intron | 30.0% | |
| TCCTGATGTAAAAAGAAAAC+AGG | + | tig0027057:49587-49606 | Msa1432310:intron | 30.0% | |
| ! | ACCTGTTTTCTTTTTACATC+AGG | - | tig0027057:49591-49610 | None:intergenic | 30.0% |
| !! | ATGCATTCAAGAAGCATTAA+AGG | + | tig0027057:49698-49717 | Msa1432310:intron | 30.0% |
| TGAACGTTAATCTACTTTCT+AGG | + | tig0027057:50222-50241 | Msa1432310:intron | 30.0% | |
| TAATCTACTTTCTAGGTCAA+AGG | + | tig0027057:50229-50248 | Msa1432310:intron | 30.0% | |
| CAGATAAAATCAACTCAATG+TGG | - | tig0027057:50470-50489 | None:intergenic | 30.0% | |
| ! | GATTTTATCTGAAAAGGAAG+AGG | + | tig0027057:50479-50498 | Msa1432310:CDS | 30.0% |
| ! | TAATTGTTTCGGCAAGATTT+TGG | + | tig0027057:50556-50575 | Msa1432310:intron | 30.0% |
| !!! | ATTCTGATATTTTTTCCAGC+CGG | + | tig0027057:50598-50617 | Msa1432310:intron | 30.0% |
| AATTGTCAAACATGATTCAC+CGG | + | tig0027057:50816-50835 | Msa1432310:three_prime_UTR | 30.0% | |
| ACCTGCAAATAAACGATAGA+GGG | - | tig0027057:46698-46717 | None:intergenic | 35.0% | |
| AACCTGCAAATAAACGATAG+AGG | - | tig0027057:46699-46718 | None:intergenic | 35.0% | |
| GCAATGAGAATCGAAAATGA+GGG | - | tig0027057:46760-46779 | None:intergenic | 35.0% | |
| TGCAATGAGAATCGAAAATG+AGG | - | tig0027057:46761-46780 | None:intergenic | 35.0% | |
| TTACAGAAGTTGCTTACACT+TGG | - | tig0027057:46880-46899 | None:intergenic | 35.0% | |
| TACAAACACAAACAGAGACT+CGG | - | tig0027057:47533-47552 | None:intergenic | 35.0% | |
| CGAAACTAGTGTCTAATAGA+TGG | - | tig0027057:47823-47842 | None:intergenic | 35.0% | |
| ACAGGTCTTCACAAAATAAC+AGG | - | tig0027057:47882-47901 | None:intergenic | 35.0% | |
| AAGACCTGTCGTTAAAATCA+GGG | + | tig0027057:47893-47912 | Msa1432310:intron | 35.0% | |
| ! | GAGATAATAGCCATGGTTTT+TGG | + | tig0027057:47915-47934 | Msa1432310:intron | 35.0% |
| AAATCATTACATGGGAGTTG+AGG | - | tig0027057:47945-47964 | None:intergenic | 35.0% | |
| AACCTGATTGAAAAAAGCAG+TGG | + | tig0027057:48183-48202 | Msa1432310:intron | 35.0% | |
| TTTATATCCCTGAAGGTTAC+GGG | - | tig0027057:48233-48252 | None:intergenic | 35.0% | |
| !! | AATGGGTTTTATATCCCTGA+AGG | - | tig0027057:48240-48259 | None:intergenic | 35.0% |
| TAGGTTCACCCAATAACAAT+GGG | - | tig0027057:48257-48276 | None:intergenic | 35.0% | |
| ATAGGTTCACCCAATAACAA+TGG | - | tig0027057:48258-48277 | None:intergenic | 35.0% | |
| GTATCACAAAGACAAGACAT+AGG | - | tig0027057:48276-48295 | None:intergenic | 35.0% | |
| GAATGTACCTCGTTAAATTC+AGG | + | tig0027057:48412-48431 | Msa1432310:intron | 35.0% | |
| !!! | CCACTGCTTTTTTTTCAATC+AGG | - | tig0027057:48798-48817 | None:intergenic | 35.0% |
| CCTGATTGAAAAAAAAGCAG+TGG | + | tig0027057:48795-48814 | Msa1432310:intron | 35.0% | |
| TATATATCCCTGAAGGTTAC+GGG | - | tig0027057:48845-48864 | None:intergenic | 35.0% | |
| !! | AATGGGTTATATATCCCTGA+AGG | - | tig0027057:48852-48871 | None:intergenic | 35.0% |
| AACCTGATTGAAAAAAGCAG+TGG | + | tig0027057:48183-48202 | Msa1432310:intron | 35.0% | |
| GTATCACAAAGACAAGACAT+AGG | - | tig0027057:48276-48295 | None:intergenic | 35.0% | |
| TCTTTGTGATACGTGATTGA+AGG | + | tig0027057:49293-49312 | Msa1432310:intron | 35.0% | |
| ATTGAAGGTTCAGTAAACGA+TGG | + | tig0027057:49308-49327 | Msa1432310:intron | 35.0% | |
| TGATTTAGCCACCTTCTTAA+TGG | + | tig0027057:49451-49470 | Msa1432310:intron | 35.0% | |
| AGTAGCAGTAGCTTAATTGT+AGG | - | tig0027057:49837-49856 | None:intergenic | 35.0% | |
| AATTGTACTTGCAGAACACT+AGG | + | tig0027057:49904-49923 | Msa1432310:intron | 35.0% | |
| ATTGTACTTGCAGAACACTA+GGG | + | tig0027057:49905-49924 | Msa1432310:intron | 35.0% | |
| ! | TCCATTAGAGTGTCTATTCT+TGG | - | tig0027057:50057-50076 | None:intergenic | 35.0% |
| ! | AATAGACACTCTAATGGACA+AGG | + | tig0027057:50059-50078 | Msa1432310:CDS | 35.0% |
| TACTTTCTAGGTCAAAGGTT+TGG | + | tig0027057:50234-50253 | Msa1432310:intron | 35.0% | |
| AAAATCAACTCAATGTGGCA+AGG | - | tig0027057:50465-50484 | None:intergenic | 35.0% | |
| TTTATCTGAAAAGGAAGAGG+CGG | + | tig0027057:50482-50501 | Msa1432310:CDS | 35.0% | |
| ! | ATCACGGTTTTTGTAAACTC+CGG | - | tig0027057:50838-50857 | None:intergenic | 35.0% |
| TTCTAAGCTTACCATGACGA+CGG | - | tig0027057:46736-46755 | None:intergenic | 40.0% | |
| TTACACTTGGTAGGGTTATC+AGG | - | tig0027057:46867-46886 | None:intergenic | 40.0% | |
| GAAGTTGCTTACACTTGGTA+GGG | - | tig0027057:46875-46894 | None:intergenic | 40.0% | |
| AGAAGTTGCTTACACTTGGT+AGG | - | tig0027057:46876-46895 | None:intergenic | 40.0% | |
| ! | TTTTACATATGCAGCCACCA+AGG | + | tig0027057:46976-46995 | Msa1432310:intron | 40.0% |
| GTTACCTGAAATGAACTCTG+AGG | - | tig0027057:47015-47034 | None:intergenic | 40.0% | |
| ATTTGGAAGGAAAAAGGCTG+AGG | + | tig0027057:47418-47437 | Msa1432310:intron | 40.0% | |
| ! | TTACAAGAGGCATGTTCACA+TGG | - | tig0027057:47451-47470 | None:intergenic | 40.0% |
| GCATGTTCACATGTTACAAG+AGG | - | tig0027057:47464-47483 | None:intergenic | 40.0% | |
| !!! | CAGGCAACTGCTTTTTCATA+GGG | - | tig0027057:47863-47882 | None:intergenic | 40.0% |
| !!! | ACAGGCAACTGCTTTTTCAT+AGG | - | tig0027057:47864-47883 | None:intergenic | 40.0% |
| GAAGACCTGTCGTTAAAATC+AGG | + | tig0027057:47892-47911 | Msa1432310:intron | 40.0% | |
| !! | ATCTCCCTGATTTTAACGAC+AGG | - | tig0027057:47900-47919 | None:intergenic | 40.0% |
| AATCAGGGAGATAATAGCCA+TGG | + | tig0027057:47908-47927 | Msa1432310:intron | 40.0% | |
| ! | GAGGGTACATTTCGTACATA+TGG | + | tig0027057:47979-47998 | Msa1432310:intron | 40.0% |
| TCTAAGTAATAAGGGTAGCC+AGG | - | tig0027057:48084-48103 | None:intergenic | 40.0% | |
| !!! | GACCACTGCTTTTTTCAATC+AGG | - | tig0027057:48188-48207 | None:intergenic | 40.0% |
| GATTGAAAAAAGCAGTGGTC+TGG | + | tig0027057:48188-48207 | Msa1432310:intron | 40.0% | |
| TCTTTGTGATACGTGACTGA+AGG | + | tig0027057:48284-48303 | Msa1432310:intron | 40.0% | |
| ACTGAAGGTTCAGTAAACGA+TGG | + | tig0027057:48299-48318 | Msa1432310:intron | 40.0% | |
| CTATCTCCCTGAATTTAACG+AGG | - | tig0027057:48422-48441 | None:intergenic | 40.0% | |
| ! | TCTAAGTAATGAGGTTAGCC+AGG | - | tig0027057:48590-48609 | None:intergenic | 40.0% |
| ! | TCTAAGTAATGAGGTTAGCC+AGG | - | tig0027057:48590-48609 | None:intergenic | 40.0% |
| GAGGTTCACCCAATAACAAT+GGG | - | tig0027057:48869-48888 | None:intergenic | 40.0% | |
| AGAGGTTCACCCAATAACAA+TGG | - | tig0027057:48870-48889 | None:intergenic | 40.0% | |
| GTATCACAAAGACAAGACAG+AGG | - | tig0027057:48888-48907 | None:intergenic | 40.0% | |
| TCTTTGTGATACGTGACTGA+AGG | + | tig0027057:48284-48303 | Msa1432310:intron | 40.0% | |
| !! | GTGGTTTGTTGTCTTGTGAA+TGG | + | tig0027057:49012-49031 | Msa1432310:intron | 40.0% |
| TCTCCCTGAGTTTAACAAGA+GGG | - | tig0027057:49039-49058 | None:intergenic | 40.0% | |
| ATCTCCCTGAGTTTAACAAG+AGG | - | tig0027057:49040-49059 | None:intergenic | 40.0% | |
| CAGGTTGTTGCATGACTATA+GGG | - | tig0027057:49178-49197 | None:intergenic | 40.0% | |
| ! | TCAGGTTGTTGCATGACTAT+AGG | - | tig0027057:49179-49198 | None:intergenic | 40.0% |
| !!! | GACCACTGCTTTTTTCAATC+AGG | - | tig0027057:48188-48207 | None:intergenic | 40.0% |
| GATTGAAAAAAGCAGTGGTC+TGG | + | tig0027057:48188-48207 | Msa1432310:intron | 40.0% | |
| AAGCAACTAGGCCATTAAGA+AGG | - | tig0027057:49465-49484 | None:intergenic | 40.0% | |
| ATGAGGCAAATCAAGCAACT+AGG | - | tig0027057:49477-49496 | None:intergenic | 40.0% | |
| ATATCACAGACATTTCCGAG+AGG | - | tig0027057:49637-49656 | None:intergenic | 40.0% | |
| !!! | TACCTTTTAGCCTTGGTCAA+GGG | - | tig0027057:49957-49976 | None:intergenic | 40.0% |
| ! | TTCCAAGTACCTTTTAGCCT+TGG | - | tig0027057:49964-49983 | None:intergenic | 40.0% |
| ACAGAAACGTCTGAATGGAA+TGG | - | tig0027057:50009-50028 | None:intergenic | 40.0% | |
| GCCAAGAATAGACACTCTAA+TGG | + | tig0027057:50053-50072 | Msa1432310:CDS | 40.0% | |
| !! | ATAAACTTCGCTGACTTGAC+TGG | - | tig0027057:50092-50111 | None:intergenic | 40.0% |
| ! | CATACGGTTGATTCTTCCAT+GGG | - | tig0027057:50332-50351 | None:intergenic | 40.0% |
| ! | ACATACGGTTGATTCTTCCA+TGG | - | tig0027057:50333-50352 | None:intergenic | 40.0% |
| AAGAAGAGGGCTTAAACTCT+AGG | + | tig0027057:50641-50660 | Msa1432310:exon | 40.0% | |
| TATTGCTGCCTTGTACTCTT+AGG | + | tig0027057:50670-50689 | Msa1432310:three_prime_UTR | 40.0% | |
| ! | TGACAAGACCTAAGAGTACA+AGG | - | tig0027057:50681-50700 | None:intergenic | 40.0% |
| AGCAGGAATGAAGTGAGGTA+TGG | - | tig0027057:46670-46689 | None:intergenic | 45.0% | |
| GCCCTCTATCGTTTATTTGC+AGG | + | tig0027057:46694-46713 | Msa1432310:five_prime_UTR | 45.0% | |
| CTGACCTCAGAGTTCATTTC+AGG | + | tig0027057:47008-47027 | Msa1432310:CDS | 45.0% | |
| TTGAGGTCTCCCAAAAACCA+TGG | - | tig0027057:47928-47947 | None:intergenic | 45.0% | |
| CATCTTAGTGGCATAGTTCC+TGG | + | tig0027057:48063-48082 | Msa1432310:intron | 45.0% | |
| ! | TGTTTCAAGTAGCCTCCTAG+TGG | + | tig0027057:48557-48576 | Msa1432310:intron | 45.0% |
| !! | TACGGGTGGACTGTTCATAT+AGG | - | tig0027057:48828-48847 | None:intergenic | 45.0% |
| TGGACCCTCTTGTTAAACTC+AGG | + | tig0027057:49032-49051 | Msa1432310:intron | 45.0% | |
| GGACCCTCTTGTTAAACTCA+GGG | + | tig0027057:49033-49052 | Msa1432310:intron | 45.0% | |
| ATATCCCTGAATGTTACGGG+TGG | - | tig0027057:49239-49258 | None:intergenic | 45.0% | |
| CAACTAGGCCATTAAGAAGG+TGG | - | tig0027057:49462-49481 | None:intergenic | 45.0% | |
| TCTATATCGAGCAGTCCTCT+CGG | + | tig0027057:49619-49638 | Msa1432310:intron | 45.0% | |
| !!! | GTACCTTTTAGCCTTGGTCA+AGG | - | tig0027057:49958-49977 | None:intergenic | 45.0% |
| !! | GACCAAGGCTAAAAGGTACT+TGG | + | tig0027057:49959-49978 | Msa1432310:CDS | 45.0% |
| AGACGTTCTTGCACACAAAC+AGG | + | tig0027057:49983-50002 | Msa1432310:CDS | 45.0% | |
| ! | AGAGTGTCTATTCTTGGCCT+GGG | - | tig0027057:50051-50070 | None:intergenic | 45.0% |
| ! | TAGAGTGTCTATTCTTGGCC+TGG | - | tig0027057:50052-50071 | None:intergenic | 45.0% |
| ! | GACACTCTAATGGACAAGGA+AGG | + | tig0027057:50063-50082 | Msa1432310:CDS | 45.0% |
| ! | ACTCTAATGGACAAGGAAGG+TGG | + | tig0027057:50066-50085 | Msa1432310:CDS | 45.0% |
| CAAGTCAGCGAAGTTTATCC+TGG | + | tig0027057:50094-50113 | Msa1432310:CDS | 45.0% | |
| CTGCATTCTTCAGCAAATCC+AGG | - | tig0027057:50115-50134 | None:intergenic | 45.0% | |
| GCTTCTGTGCTTGATTGACT+TGG | - | tig0027057:50288-50307 | None:intergenic | 45.0% | |
| !!! | AGTTTTTTTTTTATTTTATA+AGG | + | tig0027057:47269-47288 | Msa1432310:intron | 5.0% |
| !! | TAATTAATAATTGATATATT+TGG | + | tig0027057:48759-48778 | Msa1432310:intron | 5.0% |
| CTGAGAGCAGGAATGAAGTG+AGG | - | tig0027057:46675-46694 | None:intergenic | 50.0% | |
| TGACAATGACTAGGGCCGTT+TGG | - | tig0027057:47311-47330 | None:intergenic | 50.0% | |
| !! | TACGGGTGGACTGCTCATAT+AGG | - | tig0027057:48216-48235 | None:intergenic | 50.0% |
| ATATCCCTGAAGGTTACGGG+TGG | - | tig0027057:48230-48249 | None:intergenic | 50.0% | |
| TAGCCAGGAACTATGCCACT+AGG | - | tig0027057:48069-48088 | None:intergenic | 50.0% | |
| ! | GAGTGTTTCAAGTAGCCTCC+TGG | + | tig0027057:48554-48573 | Msa1432310:intron | 50.0% |
| ! | TGTTTCAAGTAGCCTCCTGG+TGG | + | tig0027057:48659-48678 | Msa1432310:intron | 50.0% |
| ATATCCCTGAAGGTTACGGG+TGG | - | tig0027057:48230-48249 | None:intergenic | 50.0% | |
| TGCCCTTGACCAAGGCTAAA+AGG | + | tig0027057:49952-49971 | Msa1432310:CDS | 50.0% | |
| CCACGACAGAAACGTCTGAA+TGG | - | tig0027057:50014-50033 | None:intergenic | 50.0% | |
| CCATTCAGACGTTTCTGTCG+TGG | + | tig0027057:50011-50030 | Msa1432310:CDS | 50.0% | |
| AGACGTTTCTGTCGTGGTGT+TGG | + | tig0027057:50017-50036 | Msa1432310:CDS | 50.0% | |
| GACGTTTCTGTCGTGGTGTT+GGG | + | tig0027057:50018-50037 | Msa1432310:CDS | 50.0% | |
| ! | GGCGGTTCAGAAAGAGGTAT+TGG | + | tig0027057:50500-50519 | Msa1432310:intron | 50.0% |
| ! | CTTCTTGCTTGCTGCCAACT+GGG | - | tig0027057:50627-50646 | None:intergenic | 50.0% |
| ! | TCTTCTTGCTTGCTGCCAAC+TGG | - | tig0027057:50628-50647 | None:intergenic | 50.0% |
| AGTTGGCAGCAAGCAAGAAG+AGG | + | tig0027057:50627-50646 | Msa1432310:CDS | 50.0% | |
| GTTGGCAGCAAGCAAGAAGA+GGG | + | tig0027057:50628-50647 | Msa1432310:CDS | 50.0% | |
| AACGATAGAGGGCTGAGAGC+AGG | - | tig0027057:46687-46706 | None:intergenic | 55.0% | |
| ! | TGACGACGGCGTTTGATGAC+TGG | - | tig0027057:46722-46741 | None:intergenic | 55.0% |
| GTCATCAAACGCCGTCGTCA+TGG | + | tig0027057:46722-46741 | Msa1432310:exon | 55.0% | |
| CAGTCCACCCGTAACCTTCA+GGG | + | tig0027057:48223-48242 | Msa1432310:intron | 55.0% | |
| CCAGGAACTATGCCACTAGG+AGG | - | tig0027057:48572-48591 | None:intergenic | 55.0% | |
| CCTCCTAGTGGCATAGTTCC+TGG | + | tig0027057:48569-48588 | Msa1432310:intron | 55.0% | |
| TAGCCAGGAACTATGCCACC+AGG | - | tig0027057:48677-48696 | None:intergenic | 55.0% | |
| ACAGTCCACCCGTAACCTTC+AGG | + | tig0027057:48834-48853 | Msa1432310:intron | 55.0% | |
| CAGTCCACCCGTAACCTTCA+GGG | + | tig0027057:48223-48242 | Msa1432310:intron | 55.0% | |
| TACGGGTGGACGGCTCATAT+AGG | - | tig0027057:49225-49244 | None:intergenic | 55.0% | |
| CCCTGAATGTTACGGGTGGA+CGG | - | tig0027057:49235-49254 | None:intergenic | 55.0% | |
| CCGTCCACCCGTAACATTCA+GGG | + | tig0027057:49232-49251 | Msa1432310:intron | 55.0% | |
| GGGAAACTGCCTTTGCCATC+AGG | + | tig0027057:49925-49944 | Msa1432310:intron | 55.0% | |
| GGGCAACTTCCTGATGGCAA+AGG | - | tig0027057:49937-49956 | None:intergenic | 55.0% | |
| GGTCAAGGGCAACTTCCTGA+TGG | - | tig0027057:49943-49962 | None:intergenic | 55.0% | |
| CAGGAAGTTGCCCTTGACCA+AGG | + | tig0027057:49944-49963 | Msa1432310:CDS | 55.0% | |
| ! | GTTTCTGTCGTGGTGTTGGG+AGG | + | tig0027057:50021-50040 | Msa1432310:CDS | 55.0% |
| CGCAGAACATACAGAGCCCA+TGG | + | tig0027057:50313-50332 | Msa1432310:CDS | 55.0% | |
| GGAAGAGGCGGTTCAGAAAG+AGG | + | tig0027057:50494-50513 | Msa1432310:CDS | 55.0% | |
| TATGCAGCCACCAAGGCTCG+TGG | + | tig0027057:46983-47002 | Msa1432310:intron | 60.0% | |
| GCAGTCCACCCGTAACCTTC+AGG | + | tig0027057:48222-48241 | Msa1432310:intron | 60.0% | |
| CCAGGAACTATGCCACCAGG+AGG | - | tig0027057:48674-48693 | None:intergenic | 60.0% | |
| CCTCCTGGTGGCATAGTTCC+TGG | + | tig0027057:48671-48690 | Msa1432310:intron | 60.0% | |
| GCCGTCCACCCGTAACATTC+AGG | + | tig0027057:49231-49250 | Msa1432310:intron | 60.0% | |
| TTTCCAGCCGGAGTCCCAGT+TGG | + | tig0027057:50610-50629 | Msa1432310:intron | 60.0% | |
| CTTGCTGCCAACTGGGACTC+CGG | - | tig0027057:50620-50639 | None:intergenic | 60.0% | |
| GTCAGCACCACGAGCCTTGG+TGG | - | tig0027057:46993-47012 | None:intergenic | 65.0% | |
| GAGGTCAGCACCACGAGCCT+TGG | - | tig0027057:46996-47015 | None:intergenic | 65.0% | |
| ! | TGGTGTTGGGAGGACAGCCC+AGG | + | tig0027057:50031-50050 | Msa1432310:CDS | 65.0% |
| CTGCCAACTGGGACTCCGGC+TGG | - | tig0027057:50616-50635 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0027057 | gene | 46664 | 50901 | 46664 | ID=Msa1432310;Name=Msa1432310 |
| tig0027057 | mRNA | 46664 | 50901 | 46664 | ID=Msa1432310-mRNA-1;Parent=Msa1432310;Name=Msa1432310-mRNA-1;_AED=0.17;_eAED=0.17;_QI=77|0.83|0.85|1|1|1|7|246|170 |
| tig0027057 | exon | 46664 | 46743 | 46664 | ID=Msa1432310-mRNA-1:exon:8007;Parent=Msa1432310-mRNA-1 |
| tig0027057 | exon | 46846 | 46882 | 46846 | ID=Msa1432310-mRNA-1:exon:8008;Parent=Msa1432310-mRNA-1 |
| tig0027057 | exon | 46990 | 47029 | 46990 | ID=Msa1432310-mRNA-1:exon:8009;Parent=Msa1432310-mRNA-1 |
| tig0027057 | exon | 49926 | 50148 | 49926 | ID=Msa1432310-mRNA-1:exon:8010;Parent=Msa1432310-mRNA-1 |
| tig0027057 | exon | 50244 | 50346 | 50244 | ID=Msa1432310-mRNA-1:exon:8011;Parent=Msa1432310-mRNA-1 |
| tig0027057 | exon | 50448 | 50515 | 50448 | ID=Msa1432310-mRNA-1:exon:8012;Parent=Msa1432310-mRNA-1 |
| tig0027057 | exon | 50617 | 50901 | 50617 | ID=Msa1432310-mRNA-1:exon:8013;Parent=Msa1432310-mRNA-1 |
| tig0027057 | five_prime_UTR | 46664 | 46740 | 46664 | ID=Msa1432310-mRNA-1:five_prime_utr;Parent=Msa1432310-mRNA-1 |
| tig0027057 | CDS | 46741 | 46743 | 46741 | ID=Msa1432310-mRNA-1:cds;Parent=Msa1432310-mRNA-1 |
| tig0027057 | CDS | 46846 | 46882 | 46846 | ID=Msa1432310-mRNA-1:cds;Parent=Msa1432310-mRNA-1 |
| tig0027057 | CDS | 46990 | 47029 | 46990 | ID=Msa1432310-mRNA-1:cds;Parent=Msa1432310-mRNA-1 |
| tig0027057 | CDS | 49926 | 50148 | 49926 | ID=Msa1432310-mRNA-1:cds;Parent=Msa1432310-mRNA-1 |
| tig0027057 | CDS | 50244 | 50346 | 50244 | ID=Msa1432310-mRNA-1:cds;Parent=Msa1432310-mRNA-1 |
| tig0027057 | CDS | 50448 | 50515 | 50448 | ID=Msa1432310-mRNA-1:cds;Parent=Msa1432310-mRNA-1 |
| tig0027057 | CDS | 50617 | 50655 | 50617 | ID=Msa1432310-mRNA-1:cds;Parent=Msa1432310-mRNA-1 |
| tig0027057 | three_prime_UTR | 50656 | 50901 | 50656 | ID=Msa1432310-mRNA-1:three_prime_utr;Parent=Msa1432310-mRNA-1 |
| Gene Sequence |
| Protein sequence |
