AlfalfaGEDB | Msa0174580

M. sativa cultivar zhongmu-4 / Msa0174580

KEGG: K02885
GO: -
PFAM: PF01280.23

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0174580	XP_003591473.1	99.061	213	2	0	1	213	1	213	1.96e-150	426

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0174580	sp\|Q9LUQ6\|RL192_ARATH	84.135	208	31	1	1	206	1	208	1.67e-124	353

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0174580	B7FHF4	99.061	213	2	0	1	213	1	213	9.38e-151	426

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0001760	Msa0174580	0.870982	9.662386e-67	-8.615850e-47
Msa0003330	Msa0174580	0.869253	3.555536e-66	-8.615850e-47
Msa0027590	Msa0174580	0.867693	1.134014e-65	-8.615850e-47
Msa0040220	Msa0174580	0.830798	2.396968e-55	-8.615850e-47
Msa0075350	Msa0174580	0.823685	1.212628e-53	-8.615850e-47
Msa0079560	Msa0174580	0.801212	1.001458e-48	-8.615850e-47
Msa0086160	Msa0174580	0.813414	2.590887e-51	-8.615850e-47
Msa0087910	Msa0174580	0.884500	1.818282e-71	-8.615850e-47
Msa0114600	Msa0174580	0.835195	1.932679e-56	-8.615850e-47
Msa0123290	Msa0174580	0.801874	7.329669e-49	-8.615850e-47
Msa0128330	Msa0174580	0.991232	1.439498e-186	-8.615850e-47
Msa0128750	Msa0174580	0.903344	3.821509e-79	-8.615850e-47
Msa0132460	Msa0174580	0.878212	3.371668e-69	-8.615850e-47
Msa0134580	Msa0174580	0.880525	5.107807e-70	-8.615850e-47
Msa0146610	Msa0174580	0.842400	2.645917e-58	-8.615850e-47
Msa0167860	Msa0174580	0.918479	1.481095e-86	-8.615850e-47
Msa0168320	Msa0174580	0.839618	1.422531e-57	-8.615850e-47
Msa0174580	Msa0182050	0.883280	5.128865e-71	-8.615850e-47
Msa0174580	Msa0182100	0.870465	1.429924e-66	-8.615850e-47
Msa0174580	Msa0191450	0.882105	1.376955e-70	-8.615850e-47
Msa0174580	Msa0191550	0.891544	3.604495e-74	-8.615850e-47
Msa0174580	Msa0192300	0.865193	7.053289e-65	-8.615850e-47
Msa0174580	Msa0194940	0.896779	2.658674e-76	-8.615850e-47
Msa0174580	Msa0210330	0.806330	8.666837e-50	-8.615850e-47
Msa0174580	Msa0225350	0.830355	3.077308e-55	-8.615850e-47
Msa0174580	Msa0233550	0.823767	1.160257e-53	-8.615850e-47
Msa0174580	Msa0234850	0.825497	4.538578e-54	-8.615850e-47
Msa0174580	Msa0234900	0.811614	6.410093e-51	-8.615850e-47
Msa0174580	Msa0235050	0.846460	2.142691e-59	-8.615850e-47
Msa0174580	Msa0264640	0.809313	2.012513e-50	-8.615850e-47
Msa0174580	Msa0277600	0.922082	1.559401e-88	-8.615850e-47
Msa0174580	Msa0281370	0.807049	6.111856e-50	-8.615850e-47
Msa0174580	Msa0301220	0.817942	2.538485e-52	-8.615850e-47
Msa0174580	Msa0301250	0.872248	3.678868e-67	-8.615850e-47
Msa0174580	Msa0313060	0.882567	9.348848e-71	-8.615850e-47
Msa0174580	Msa0313520	0.801625	8.241521e-49	-8.615850e-47
Msa0174580	Msa0315430	0.930353	1.852573e-93	-8.615850e-47
Msa0174580	Msa0369410	0.853656	2.068509e-61	-8.615850e-47
Msa0174580	Msa0371490	0.831823	1.341295e-55	-8.615850e-47
Msa0174580	Msa0377370	0.801362	9.331543e-49	-8.615850e-47
Msa0174580	Msa0377520	0.839970	1.152319e-57	-8.615850e-47
Msa0174580	Msa0419710	0.831235	1.872345e-55	-8.615850e-47
Msa0174580	Msa0426090	0.877313	6.948874e-69	-8.615850e-47
Msa0174580	Msa0426250	0.905086	6.220902e-80	-8.615850e-47
Msa0174580	Msa0450150	0.862073	6.559421e-64	-8.615850e-47
Msa0174580	Msa0463520	0.806833	6.787696e-50	-8.615850e-47
Msa0174580	Msa0468440	0.812890	3.376101e-51	-8.615850e-47
Msa0174580	Msa0471880	0.810806	9.599281e-51	-8.615850e-47
Msa0174580	Msa0472480	0.865440	5.898274e-65	-8.615850e-47
Msa0174580	Msa0473570	0.801308	9.572874e-49	-8.615850e-47
Msa0174580	Msa0475810	0.802677	5.008050e-49	-8.615850e-47
Msa0174580	Msa0481520	0.904298	1.420952e-79	-8.615850e-47
Msa0174580	Msa0481800	0.859549	3.829906e-63	-8.615850e-47
Msa0174580	Msa0481850	0.802230	6.191620e-49	-8.615850e-47
Msa0174580	Msa0482560	0.862733	4.111312e-64	-8.615850e-47
Msa0174580	Msa0484730	0.819974	8.758984e-53	-8.615850e-47
Msa0174580	Msa0511760	0.843356	1.473354e-58	-8.615850e-47
Msa0174580	Msa0517480	0.854504	1.178130e-61	-8.615850e-47
Msa0174580	Msa0529900	0.883944	2.922240e-71	-8.615850e-47
Msa0174580	Msa0547920	0.882204	1.267013e-70	-8.615850e-47
Msa0174580	Msa0573550	0.906864	9.398351e-81	-8.615850e-47
Msa0174580	Msa0574780	0.873635	1.262176e-67	-8.615850e-47
Msa0174580	Msa0578010	0.839585	1.450695e-57	-8.615850e-47
Msa0174580	Msa0579830	0.900091	1.035903e-77	-8.615850e-47
Msa0174580	Msa0585570	0.839358	1.662639e-57	-8.615850e-47
Msa0174580	Msa0597240	0.851014	1.169361e-60	-8.615850e-47
Msa0174580	Msa0602900	0.867781	1.062506e-65	-8.615850e-47
Msa0174580	Msa0605600	0.817590	3.047589e-52	-8.615850e-47
Msa0174580	Msa0605890	0.886474	3.315198e-72	-8.615850e-47
Msa0174580	Msa0609350	0.822180	2.719353e-53	-8.615850e-47
Msa0174580	Msa0619230	0.880688	4.467261e-70	-8.615850e-47
Msa0174580	Msa0643960	0.867166	1.671514e-65	-8.615850e-47
Msa0174580	Msa0649890	0.897115	1.922146e-76	-8.615850e-47
Msa0174580	Msa0653060	0.814585	1.429270e-51	-8.615850e-47
Msa0174580	Msa0656450	0.842141	3.099523e-58	-8.615850e-47
Msa0174580	Msa0663400	0.853654	2.071961e-61	-8.615850e-47
Msa0174580	Msa0686550	0.832811	7.639489e-56	-8.615850e-47
Msa0174580	Msa0694400	0.945973	1.115930e-104	-8.615850e-47
Msa0174580	Msa0704860	0.879420	1.264944e-69	-8.615850e-47
Msa0174580	Msa0705800	0.811731	6.044905e-51	-8.615850e-47
Msa0174580	Msa0708630	0.878683	2.303235e-69	-8.615850e-47
Msa0174580	Msa0741510	0.858326	8.894810e-63	-8.615850e-47
Msa0174580	Msa0748350	0.822249	2.620570e-53	-8.615850e-47
Msa0174580	Msa0749000	0.825126	5.556711e-54	-8.615850e-47
Msa0174580	Msa0758420	0.817041	4.049967e-52	-8.615850e-47
Msa0174580	Msa0788380	0.842937	1.905782e-58	-8.615850e-47
Msa0174580	Msa0790450	0.808692	2.733124e-50	-8.615850e-47
Msa0174580	Msa0796490	0.836298	1.015545e-56	-8.615850e-47
Msa0174580	Msa0838070	0.836703	8.012591e-57	-8.615850e-47
Msa0174580	Msa0902730	0.890083	1.356714e-73	-8.615850e-47
Msa0174580	Msa0929680	0.807157	5.796819e-50	-8.615850e-47
Msa0174580	Msa0929700	0.889818	1.723141e-73	-8.615850e-47
Msa0174580	Msa0930100	0.819477	1.137857e-52	-8.615850e-47
Msa0174580	Msa0930790	0.844432	7.588699e-59	-8.615850e-47
Msa0174580	Msa0930890	0.869634	2.673894e-66	-8.615850e-47
Msa0174580	Msa0978470	0.826254	3.000544e-54	-8.615850e-47
Msa0174580	Msa1037290	0.840308	9.400556e-58	-8.615850e-47
Msa0174580	Msa1040160	0.820733	5.869394e-53	-8.615850e-47
Msa0174580	Msa1041680	0.810502	1.116490e-50	-8.615850e-47
Msa0174580	Msa1079910	0.862545	4.696544e-64	-8.615850e-47
Msa0174580	Msa1080390	0.852638	4.046953e-61	-8.615850e-47
Msa0174580	Msa1082050	0.801568	8.470083e-49	-8.615850e-47
Msa0174580	Msa1083370	0.824365	8.397279e-54	-8.615850e-47
Msa0174580	Msa1093500	0.887127	1.873581e-72	-8.615850e-47
Msa0174580	Msa1124850	0.848987	4.316084e-60	-8.615850e-47
Msa0174580	Msa1125900	0.862801	3.917531e-64	-8.615850e-47
Msa0174580	Msa1126100	0.855477	6.144447e-62	-8.615850e-47
Msa0174580	Msa1126520	0.809874	1.525246e-50	-8.615850e-47
Msa0174580	Msa1126690	0.866713	2.331554e-65	-8.615850e-47
Msa0174580	Msa1164150	0.876947	9.306218e-69	-8.615850e-47
Msa0174580	Msa1166570	0.817856	2.654101e-52	-8.615850e-47
Msa0174580	Msa1167540	0.814568	1.442171e-51	-8.615850e-47
Msa0174580	Msa1180000	0.876833	1.019759e-68	-8.615850e-47
Msa0174580	Msa1183830	0.808133	3.597107e-50	-8.615850e-47
Msa0174580	Msa1186030	0.817597	3.037057e-52	-8.615850e-47
Msa0174580	Msa1208330	0.853432	2.399148e-61	-8.615850e-47
Msa0174580	Msa1235950	0.833580	4.914021e-56	-8.615850e-47
Msa0174580	Msa1235980	0.843465	1.378445e-58	-8.615850e-47
Msa0174580	Msa1237040	0.838133	3.446248e-57	-8.615850e-47
Msa0174580	Msa1240270	0.815209	1.039599e-51	-8.615850e-47
Msa0174580	Msa1255830	0.811196	7.902535e-51	-8.615850e-47
Msa0174580	Msa1255850	0.829524	4.905832e-55	-8.615850e-47
Msa0174580	Msa1258540	0.868787	5.035057e-66	-8.615850e-47
Msa0174580	Msa1270640	0.865768	4.645815e-65	-8.615850e-47
Msa0174580	Msa1270710	0.864025	1.635500e-64	-8.615850e-47
Msa0174580	Msa1284060	0.821778	3.369255e-53	-8.615850e-47
Msa0174580	Msa1295150	0.845176	4.780580e-59	-8.615850e-47
Msa0174580	Msa1295170	0.804253	2.360985e-49	-8.615850e-47
Msa0174580	Msa1296090	0.819856	9.324891e-53	-8.615850e-47
Msa0174580	Msa1311400	0.851067	1.129879e-60	-8.615850e-47
Msa0174580	Msa1317390	0.847946	8.382274e-60	-8.615850e-47
Msa0174580	Msa1330730	0.819532	1.105215e-52	-8.615850e-47
Msa0174580	Msa1341780	0.821539	3.826972e-53	-8.615850e-47
Msa0174580	Msa1351020	0.908191	2.239363e-81	-8.615850e-47
Msa0174580	Msa1351910	0.816992	4.154180e-52	-8.615850e-47
Msa0174580	Msa1353300	0.807284	5.448741e-50	-8.615850e-47
Msa0174580	Msa1358710	0.808681	2.748409e-50	-8.615850e-47
Msa0174580	Msa1368920	0.841098	5.837904e-58	-8.615850e-47
Msa0174580	Msa1371410	0.809090	2.246553e-50	-8.615850e-47
Msa0174580	Msa1374480	0.822049	2.916308e-53	-8.615850e-47
Msa0174580	Msa1385480	0.943007	2.609572e-102	-8.615850e-47
Msa0174580	Msa1390760	0.877509	5.936158e-69	-8.615850e-47
Msa0174580	Msa1397100	0.804134	2.498822e-49	-8.615850e-47
Msa0174580	Msa1407550	0.871622	5.938281e-67	-8.615850e-47
Msa0174580	Msa1413570	0.850021	2.222030e-60	-8.615850e-47
Msa0174580	Msa1415620	0.801760	7.733171e-49	-8.615850e-47
Msa0174580	Msa1424570	0.839131	1.903709e-57	-8.615850e-47
Msa0174580	Msa1432310	0.911315	6.985820e-83	-8.615850e-47
Msa0174580	Msa1446410	0.889081	3.332806e-73	-8.615850e-47
Msa0174580	Msa1450560	0.815918	7.227507e-52	-8.615850e-47
Msa0174580	Msa1463570	0.988519	2.452458e-174	-8.615850e-47
Msa0174580	Msa1465700	0.833242	5.969305e-56	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0174580	MtrunA17_Chr1g0195141	99.061	213	2	0	1	213	1	213	1.81e-154	426
Msa0174580	MtrunA17_Chr7g0269621	93.023	215	13	1	1	213	1	215	1.91e-132	371

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0174580	AT3G16780.1	84.135	208	31	1	1	206	1	208	1.70e-125	353
Msa0174580	AT1G02780.1	92.473	186	14	0	1	186	1	186	8.64e-116	329
Msa0174580	AT4G02230.1	85.915	213	25	1	1	213	1	208	8.16e-115	326
Msa0174580	AT4G16030.1	42.384	151	32	9	57	195	6	113	1.72e-14	67.4

Find 92 sgRNAs with CRISPR-Local

Find 326 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TGGATACTTGATTTACTTCT+TGG	0.183729	1_4:+60266522	None:intergenic
CCTCCTCATCCAAAGGATTT+TGG	0.205932	1_4:+60267079	None:intergenic
TACTTCTTGGATTTCTTTGA+TGG	0.223836	1_4:+60266535	None:intergenic
AAAGGAAGGAATTTCATAAT+TGG	0.234687	1_4:+60266356	None:intergenic
TAACCAACTTCCTGATGTTT+TGG	0.238015	1_4:+60267685	None:intergenic
GAGATTTCATTGCACTCATT+AGG	0.315100	1_4:+60268405	None:intergenic
GCTGTTGCAGCTGGTGCGGC+TGG	0.322299	1_4:+60266649	None:intergenic
AGGCATGATAGGGGAATTAA+AGG	0.340400	1_4:+60266338	None:intergenic
CTCTCTAGCCTTCTCAGCCT+TGG	0.342124	1_4:+60266917	None:intergenic
GCGGCTGGTGCTGCAGCTGC+AGG	0.351870	1_4:+60266664	None:intergenic
GGCCAAGAGGGCGAAGAATA+AGG	0.353398	1_4:-60266871	Msa0174580:CDS
CAAGAACAAGAGAGTCCTTA+TGG	0.366020	1_4:-60266955	Msa0174580:CDS
AGATTTCATTGCACTCATTA+GGG	0.375558	1_4:+60268406	None:intergenic
TCTCTCCCTCACACTCTCTC+TGG	0.385309	1_4:+60268514	None:intergenic
GACTGGGTTGCTGTTGCAGC+TGG	0.390238	1_4:+60266640	None:intergenic
AAGGGACGTCATTCTGGATA+TGG	0.390520	1_4:-60267585	Msa0174580:intron
AAGAGGAAGGGACGTCATTC+TGG	0.393970	1_4:-60267591	Msa0174580:CDS
GGCTCCCCACCAAAATCCTT+TGG	0.400346	1_4:-60267088	Msa0174580:CDS
AGTGAATCTTAGTTGGCTTC+CGG	0.400791	1_4:+60267646	None:intergenic
AGCCTTATTCTTCGCCCTCT+TGG	0.400876	1_4:+60266869	None:intergenic
AGTGCATTTCCATACCAAAA+TGG	0.402028	1_4:+60266410	None:intergenic
TGTCAATCTTCTTTGCCTCT+CGG	0.425253	1_4:+60267024	None:intergenic
TTAAGGATGGCTTCATTATC+CGG	0.428777	1_4:-60267665	Msa0174580:CDS
AGTGTGGTCGTGGCAAGGTC+TGG	0.433202	1_4:-60268434	Msa0174580:CDS
AACTAGGGTTAGTGAGAGAT+AGG	0.436037	1_4:-60268574	Msa0174580:five_prime_UTR
TCGTTGCAGGCCAAAACATC+AGG	0.437194	1_4:-60267695	Msa0174580:intron
GTTTAGATACTTACTGGGAC+TGG	0.459001	1_4:+60266623	None:intergenic
GCTGCAGGAACCTTCTCTCC+TGG	0.459743	1_4:+60266679	None:intergenic
AAACATCAGGAAGTTGGTTA+AGG	0.466451	1_4:-60267682	Msa0174580:CDS
AGCAAAGCGCTCTTCTCTGC+GGG	0.467270	1_4:+60266827	None:intergenic
TTGATAAATAGGTAAAAGAA+AGG	0.468156	1_4:-60267126	Msa0174580:intron
GACATTATCTGATCAGTTTG+AGG	0.469564	1_4:-60266892	Msa0174580:CDS
GTAGCAGTAGTTACGTGAAT+TGG	0.471557	1_4:+60268377	None:intergenic
GGGCGAAGAATAAGGCTAGC+AGG	0.473984	1_4:-60266863	Msa0174580:CDS
TGAGGAGGATGCGTGTCCTC+AGG	0.478520	1_4:-60267064	Msa0174580:CDS
GAGCGGGAGTGAATCTTAGT+TGG	0.479570	1_4:+60267639	None:intergenic
AAATGAAAATACTCGACCTC+TGG	0.480180	1_4:+60266502	None:intergenic
TTCACTCCCGCTCCCGTGCT+AGG	0.486394	1_4:-60267629	Msa0174580:CDS
TGGTCGTGGCAAGGTCTGGC+TGG	0.492270	1_4:-60268430	Msa0174580:CDS
AGCGTACTCAAGTGTGGTCG+TGG	0.503558	1_4:-60268444	Msa0174580:CDS
CTCCTTCATACGCCTAGCAC+GGG	0.507928	1_4:+60267617	None:intergenic
AGAATGACGTCCCTTCCTCT+TGG	0.519292	1_4:+60267593	None:intergenic
CTCCCGTGCTAGGCGTATGA+AGG	0.520929	1_4:-60267619	Msa0174580:CDS
CCTCCTTCATACGCCTAGCA+CGG	0.532368	1_4:+60267616	None:intergenic
ACTTGTGAATACTCTCCATA+AGG	0.533671	1_4:+60266940	None:intergenic
ATATAGCCTCCTTCCACCGC+AGG	0.537517	1_4:-60268545	Msa0174580:five_prime_UTR
AGGCCAAAACATCAGGAAGT+TGG	0.540880	1_4:-60267688	Msa0174580:CDS
ATCAGGAAGTTGGTTAAGGA+TGG	0.541752	1_4:-60267678	Msa0174580:CDS
TCACAAGTCCAAGGCTGAGA+AGG	0.542917	1_4:-60266925	Msa0174580:CDS
TTTAGATACTTACTGGGACT+GGG	0.545217	1_4:+60266624	None:intergenic
CATACGCCTAGCACGGGAGC+GGG	0.545913	1_4:+60267623	None:intergenic
CCACCAAAATCCTTTGGATG+AGG	0.555880	1_4:-60267082	Msa0174580:CDS
GTTCGATAACCTGCGGTGGA+AGG	0.557244	1_4:+60268536	None:intergenic
TATGAAGGAGGCCAAGAGGA+AGG	0.560584	1_4:-60267604	Msa0174580:CDS
TGATATGTACATGAAGGTGA+AGG	0.563752	1_4:-60266988	Msa0174580:CDS
TGTATAGGGTCCAGGAGAGA+AGG	0.563890	1_4:-60266689	Msa0174580:intron
TGATAAATAGGTAAAAGAAA+GGG	0.567052	1_4:-60267125	Msa0174580:intron
TCATACGCCTAGCACGGGAG+CGG	0.568186	1_4:+60267622	None:intergenic
ACTCAAGTGTGGTCGTGGCA+AGG	0.568268	1_4:-60268439	Msa0174580:CDS
CCAAAATCCTTTGGATGAGG+AGG	0.569919	1_4:-60267079	Msa0174580:CDS
GGGAGAGAGAAAGAGAGAGA+TGG	0.573584	1_4:-60268499	Msa0174580:exon
CGATAACCTGCGGTGGAAGG+AGG	0.574079	1_4:+60268539	None:intergenic
ATCGAACCAGAGAGAGTGTG+AGG	0.575582	1_4:-60268520	Msa0174580:five_prime_UTR
GGCGAAGAATAAGGCTAGCA+GGG	0.575881	1_4:-60266862	Msa0174580:CDS
TTTGGTATGGAAATGCACTT+TGG	0.589403	1_4:-60266406	Msa0174580:three_prime_UTR
AGAATAAGGCTAGCAGGGAA+AGG	0.589605	1_4:-60266857	Msa0174580:CDS
ATGATAGGGGAATTAAAGGA+AGG	0.592567	1_4:+60266342	None:intergenic
GAGCAAAGCGCTCTTCTCTG+CGG	0.593895	1_4:+60266826	None:intergenic
TGATCAGTTTGAGGCCAAGA+GGG	0.598337	1_4:-60266883	Msa0174580:CDS
CCGTGCTAGGCGTATGAAGG+AGG	0.607212	1_4:-60267616	Msa0174580:CDS
TAAAAGAAAGGGTACAAGAG+AGG	0.608223	1_4:-60267114	Msa0174580:CDS
CACGCATCCTCCTCATCCAA+AGG	0.610691	1_4:+60267072	None:intergenic
GAAAGGGTACAAGAGAGGCT+AGG	0.611551	1_4:-60267109	Msa0174580:CDS
CTCTCTGGTTCGATAACCTG+CGG	0.612831	1_4:+60268529	None:intergenic
GATATGTACATGAAGGTGAA+GGG	0.614061	1_4:-60266987	Msa0174580:CDS
ATGAAGGAGGCCAAGAGGAA+GGG	0.617125	1_4:-60267603	Msa0174580:CDS
GGAGAGTATTCACAAGTCCA+AGG	0.617146	1_4:-60266934	Msa0174580:CDS
GGTTGCTGTTGCAGCTGGTG+CGG	0.620402	1_4:+60266645	None:intergenic
TCTGGTTCGATAACCTGCGG+TGG	0.621365	1_4:+60268532	None:intergenic
GCCGCCAGCGTACTCAAGTG+TGG	0.623938	1_4:-60268450	Msa0174580:CDS
CTGATCAGTTTGAGGCCAAG+AGG	0.627289	1_4:-60266884	Msa0174580:CDS
GGCGTATGAAGGAGGCCAAG+AGG	0.634053	1_4:-60267608	Msa0174580:CDS
GTAGTTACGTGAATTGGCCA+TGG	0.639618	1_4:+60268383	None:intergenic
TCGAACCAGAGAGAGTGTGA+GGG	0.651129	1_4:-60268519	Msa0174580:five_prime_UTR
TGAGTGCAATGAAATCTCCA+TGG	0.652574	1_4:-60268400	Msa0174580:CDS
GAAGTAAATCAAGTATCCAG+AGG	0.666529	1_4:-60266518	Msa0174580:exon
ACGACCACACTTGAGTACGC+TGG	0.682599	1_4:+60268446	None:intergenic
GTATCATGATATGTACATGA+AGG	0.691105	1_4:-60266994	Msa0174580:CDS
ACCACACTTGAGTACGCTGG+CGG	0.695452	1_4:+60268449	None:intergenic
TGTCGCTCAAACTTCAGAAG+CGG	0.696714	1_4:-60268476	Msa0174580:CDS
TTTGCTTCGCAAGTACCGAG+AGG	0.708306	1_4:-60267039	Msa0174580:CDS
ACTTGCGAAGCAAACGCCTG+AGG	0.708807	1_4:+60267048	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	TGTTAAAATATTTTAATTTC+AGG	-	chr1_4:60266865-60266884	Msa0174580:CDS	10.0%
!!!	TGTTAAAATATTTTAATTTC+AGG	-	chr1_4:60266865-60266884	Msa0174580:CDS	10.0%
!!	TAGGAAAAAAAAAAAAACTA+GGG	-	chr1_4:60266761-60266780	Msa0174580:intron	15.0%
!!	AATTCATATTAAAACTATCA+AGG	+	chr1_4:60267387-60267406	None:intergenic	15.0%
!!!	ATAGTTTTAATATGAATTGA+AGG	-	chr1_4:60267389-60267408	Msa0174580:intron	15.0%
!!	CATATATTATCAAAACATTA+TGG	+	chr1_4:60268138-60268157	None:intergenic	15.0%
!!	TAGGAAAAAAAAAAAAACTA+GGG	-	chr1_4:60266761-60266780	Msa0174580:intron	15.0%
!!	AATTCATATTAAAACTATCA+AGG	+	chr1_4:60267387-60267406	None:intergenic	15.0%
!!!	ATAGTTTTAATATGAATTGA+AGG	-	chr1_4:60267389-60267408	Msa0174580:intron	15.0%
!!	CATATATTATCAAAACATTA+TGG	+	chr1_4:60268138-60268157	None:intergenic	15.0%
!!	AAAATCATAACACAAAACAT+TGG	+	chr1_4:60266585-60266604	None:intergenic	20.0%
!!	GTAGGAAAAAAAAAAAAACT+AGG	-	chr1_4:60266760-60266779	Msa0174580:intron	20.0%
!!!	ACAACATTTCAATGTTTTTT+GGG	+	chr1_4:60266798-60266817	None:intergenic	20.0%
!!	ATTAAAATGCCCAATTTATT+TGG	-	chr1_4:60267057-60267076	Msa0174580:CDS	20.0%
!!	TTAAAATGCCCAATTTATTT+GGG	-	chr1_4:60267058-60267077	Msa0174580:CDS	20.0%
!!	TTCATAACAAAAATGAGTTA+AGG	+	chr1_4:60267117-60267136	None:intergenic	20.0%
!!	ATTTGCACTTATTGATAAAT+AGG	-	chr1_4:60267792-60267811	Msa0174580:intron	20.0%
!!	TTGATAAATAGGTAAAAGAA+AGG	-	chr1_4:60267803-60267822	Msa0174580:intron	20.0%
!!	TGATAAATAGGTAAAAGAAA+GGG	-	chr1_4:60267804-60267823	Msa0174580:intron	20.0%
!!	TGATAATATATGTAGTGAAT+TGG	-	chr1_4:60268146-60268165	Msa0174580:intron	20.0%
!!!	TAGTTTTTTTTGTTATGTTG+TGG	-	chr1_4:60268346-60268365	Msa0174580:intron	20.0%
!!!	TACAAGTACAATTTTGTATT+GGG	-	chr1_4:60268482-60268501	Msa0174580:CDS	20.0%
!!!	TTTATATTTTGTTGCCATTT+TGG	-	chr1_4:60268505-60268524	Msa0174580:five_prime_UTR	20.0%
!!	AAAATCATAACACAAAACAT+TGG	+	chr1_4:60266585-60266604	None:intergenic	20.0%
!!	GTAGGAAAAAAAAAAAAACT+AGG	-	chr1_4:60266760-60266779	Msa0174580:intron	20.0%
!!!	ACAACATTTCAATGTTTTTT+GGG	+	chr1_4:60266798-60266817	None:intergenic	20.0%
!!	ATTAAAATGCCCAATTTATT+TGG	-	chr1_4:60267057-60267076	Msa0174580:CDS	20.0%
!!	TTAAAATGCCCAATTTATTT+GGG	-	chr1_4:60267058-60267077	Msa0174580:CDS	20.0%
!!	TTCATAACAAAAATGAGTTA+AGG	+	chr1_4:60267117-60267136	None:intergenic	20.0%
!!	ATTTGCACTTATTGATAAAT+AGG	-	chr1_4:60267792-60267811	Msa0174580:intron	20.0%
!!	TTGATAAATAGGTAAAAGAA+AGG	-	chr1_4:60267803-60267822	Msa0174580:intron	20.0%
!!	TGATAAATAGGTAAAAGAAA+GGG	-	chr1_4:60267804-60267823	Msa0174580:intron	20.0%
!!	TGATAATATATGTAGTGAAT+TGG	-	chr1_4:60268146-60268165	Msa0174580:intron	20.0%
!!!	TAGTTTTTTTTGTTATGTTG+TGG	-	chr1_4:60268346-60268365	Msa0174580:intron	20.0%
!!!	TACAAGTACAATTTTGTATT+GGG	-	chr1_4:60268482-60268501	Msa0174580:CDS	20.0%
!!!	TTTATATTTTGTTGCCATTT+TGG	-	chr1_4:60268505-60268524	Msa0174580:five_prime_UTR	20.0%
!!!	GAATAGATGTTGTTTTTGTT+CGG	-	chr1_4:60266694-60266713	Msa0174580:intron	25.0%
!!!	ATGTAAGGTTTGTTGTTTTA+TGG	-	chr1_4:60266719-60266738	Msa0174580:intron	25.0%
!!!	CACAACATTTCAATGTTTTT+TGG	+	chr1_4:60266799-60266818	None:intergenic	25.0%
!!!	ACTTGATTAAGATTTTAGAG+TGG	-	chr1_4:60266819-60266838	Msa0174580:intron	25.0%
!	TAAAATGCCCAATTTATTTG+GGG	-	chr1_4:60267059-60267078	Msa0174580:CDS	25.0%
!	TGATTGTGTTAATTGTTGAT+TGG	-	chr1_4:60267144-60267163	Msa0174580:intron	25.0%
!!	TGTATTTTTCTGATCATATG+TGG	-	chr1_4:60267178-60267197	Msa0174580:intron	25.0%
!	TAGAATACATTCACTCTATT+TGG	-	chr1_4:60267488-60267507	Msa0174580:intron	25.0%
!!	AAAGTGTTTAGATACTTACT+GGG	+	chr1_4:60268314-60268333	None:intergenic	25.0%
!!!	AAAAGTGTTTAGATACTTAC+TGG	+	chr1_4:60268315-60268334	None:intergenic	25.0%
!!	ATCTAAACACTTTTGTTACT+TGG	-	chr1_4:60268321-60268340	Msa0174580:intron	25.0%
!!	GTACAAGTACAATTTTGTAT+TGG	-	chr1_4:60268481-60268500	Msa0174580:CDS	25.0%
!	AAAGGAAGGAATTTCATAAT+TGG	+	chr1_4:60268576-60268595	None:intergenic	25.0%
!!!	GAATAGATGTTGTTTTTGTT+CGG	-	chr1_4:60266694-60266713	Msa0174580:intron	25.0%
!!!	ATGTAAGGTTTGTTGTTTTA+TGG	-	chr1_4:60266719-60266738	Msa0174580:intron	25.0%
!!!	CACAACATTTCAATGTTTTT+TGG	+	chr1_4:60266799-60266818	None:intergenic	25.0%
!!!	ACTTGATTAAGATTTTAGAG+TGG	-	chr1_4:60266819-60266838	Msa0174580:intron	25.0%
!	TAAAATGCCCAATTTATTTG+GGG	-	chr1_4:60267059-60267078	Msa0174580:CDS	25.0%
!	TGATTGTGTTAATTGTTGAT+TGG	-	chr1_4:60267144-60267163	Msa0174580:intron	25.0%
!!	TGTATTTTTCTGATCATATG+TGG	-	chr1_4:60267178-60267197	Msa0174580:intron	25.0%
!	TAGAATACATTCACTCTATT+TGG	-	chr1_4:60267488-60267507	Msa0174580:intron	25.0%
!!	AAAGTGTTTAGATACTTACT+GGG	+	chr1_4:60268314-60268333	None:intergenic	25.0%
!!!	AAAAGTGTTTAGATACTTAC+TGG	+	chr1_4:60268315-60268334	None:intergenic	25.0%
!!	ATCTAAACACTTTTGTTACT+TGG	-	chr1_4:60268321-60268340	Msa0174580:intron	25.0%
!!	GTACAAGTACAATTTTGTAT+TGG	-	chr1_4:60268481-60268500	Msa0174580:CDS	25.0%
!	AAAGGAAGGAATTTCATAAT+TGG	+	chr1_4:60268576-60268595	None:intergenic	25.0%
	AGATTTCATTGCACTCATTA+GGG	+	chr1_4:60266526-60266545	None:intergenic	30.0%
!!	TGTTTTTGTTCGGAAATGTA+AGG	-	chr1_4:60266704-60266723	Msa0174580:intron	30.0%
	TATTCAATAGCAGAACTTGT+AGG	-	chr1_4:60266742-60266761	Msa0174580:intron	30.0%
!!	TAGAGTGGATTTAGTTGTTT+TGG	-	chr1_4:60266834-60266853	Msa0174580:CDS	30.0%
!!!	GACTCATAAGCTAGTTTTAA+GGG	-	chr1_4:60266887-60266906	Msa0174580:CDS	30.0%
!	ATTTTTGTGCCTTTATGAAC+TGG	-	chr1_4:60266941-60266960	Msa0174580:CDS	30.0%
!	TTTTTGTGCCTTTATGAACT+GGG	-	chr1_4:60266942-60266961	Msa0174580:CDS	30.0%
!	AGCCTTTTCACTGAAAAAAT+TGG	-	chr1_4:60266976-60266995	Msa0174580:CDS	30.0%
!	GCCTTTTCACTGAAAAAATT+GGG	-	chr1_4:60266977-60266996	Msa0174580:CDS	30.0%
!	CCTTTTCACTGAAAAAATTG+GGG	-	chr1_4:60266978-60266997	Msa0174580:CDS	30.0%
!	GAAAAAATTGGGGCTTTTAT+TGG	-	chr1_4:60266988-60267007	Msa0174580:CDS	30.0%
	TCTCCACTAAGTTCATATTA+GGG	+	chr1_4:60267038-60267057	None:intergenic	30.0%
	ATCTCCACTAAGTTCATATT+AGG	+	chr1_4:60267039-60267058	None:intergenic	30.0%
	AAAATGCCCAATTTATTTGG+GGG	-	chr1_4:60267060-60267079	Msa0174580:CDS	30.0%
!	ATTTTTCTGATCATATGTGG+TGG	-	chr1_4:60267181-60267200	Msa0174580:intron	30.0%
!	TTTTTCTGATCATATGTGGT+GGG	-	chr1_4:60267182-60267201	Msa0174580:intron	30.0%
	TCAGTTGTGTAGAATATTGT+AGG	-	chr1_4:60267659-60267678	Msa0174580:CDS	30.0%
	GTATCATGATATGTACATGA+AGG	-	chr1_4:60267935-60267954	Msa0174580:intron	30.0%
!!	CCTATACATTTTAAAAGGCA+GGG	+	chr1_4:60268228-60268247	None:intergenic	30.0%
!!!	CCTGCCTTTTAAAATGTATA+GGG	-	chr1_4:60268226-60268245	Msa0174580:intron	30.0%
!	TGGACCCTATACATTTTAAA+AGG	+	chr1_4:60268233-60268252	None:intergenic	30.0%
!!!	TTTTAAAATGTATAGGGTCC+AGG	-	chr1_4:60268232-60268251	Msa0174580:intron	30.0%
	TACTTCTTGGATTTCTTTGA+TGG	+	chr1_4:60268397-60268416	None:intergenic	30.0%
	TGGATACTTGATTTACTTCT+TGG	+	chr1_4:60268410-60268429	None:intergenic	30.0%
!!!	ATTTTGTTGCCATTTTGGTA+TGG	-	chr1_4:60268510-60268529	Msa0174580:five_prime_UTR	30.0%
	AGATTTCATTGCACTCATTA+GGG	+	chr1_4:60266526-60266545	None:intergenic	30.0%
!!	TGTTTTTGTTCGGAAATGTA+AGG	-	chr1_4:60266704-60266723	Msa0174580:intron	30.0%
	TATTCAATAGCAGAACTTGT+AGG	-	chr1_4:60266742-60266761	Msa0174580:intron	30.0%
!!	TAGAGTGGATTTAGTTGTTT+TGG	-	chr1_4:60266834-60266853	Msa0174580:CDS	30.0%
!!!	GACTCATAAGCTAGTTTTAA+GGG	-	chr1_4:60266887-60266906	Msa0174580:CDS	30.0%
!	ATTTTTGTGCCTTTATGAAC+TGG	-	chr1_4:60266941-60266960	Msa0174580:CDS	30.0%
!	TTTTTGTGCCTTTATGAACT+GGG	-	chr1_4:60266942-60266961	Msa0174580:CDS	30.0%
!	AGCCTTTTCACTGAAAAAAT+TGG	-	chr1_4:60266976-60266995	Msa0174580:CDS	30.0%
!	GCCTTTTCACTGAAAAAATT+GGG	-	chr1_4:60266977-60266996	Msa0174580:CDS	30.0%
!	CCTTTTCACTGAAAAAATTG+GGG	-	chr1_4:60266978-60266997	Msa0174580:CDS	30.0%
!	GAAAAAATTGGGGCTTTTAT+TGG	-	chr1_4:60266988-60267007	Msa0174580:CDS	30.0%
	TCTCCACTAAGTTCATATTA+GGG	+	chr1_4:60267038-60267057	None:intergenic	30.0%
	ATCTCCACTAAGTTCATATT+AGG	+	chr1_4:60267039-60267058	None:intergenic	30.0%
	AAAATGCCCAATTTATTTGG+GGG	-	chr1_4:60267060-60267079	Msa0174580:CDS	30.0%
!	ATTTTTCTGATCATATGTGG+TGG	-	chr1_4:60267181-60267200	Msa0174580:intron	30.0%
!	TTTTTCTGATCATATGTGGT+GGG	-	chr1_4:60267182-60267201	Msa0174580:intron	30.0%
	TCAGTTGTGTAGAATATTGT+AGG	-	chr1_4:60267659-60267678	Msa0174580:CDS	30.0%
	GTATCATGATATGTACATGA+AGG	-	chr1_4:60267935-60267954	Msa0174580:intron	30.0%
!!	CCTATACATTTTAAAAGGCA+GGG	+	chr1_4:60268228-60268247	None:intergenic	30.0%
!!!	CCTGCCTTTTAAAATGTATA+GGG	-	chr1_4:60268226-60268245	Msa0174580:intron	30.0%
!	TGGACCCTATACATTTTAAA+AGG	+	chr1_4:60268233-60268252	None:intergenic	30.0%
!!!	TTTTAAAATGTATAGGGTCC+AGG	-	chr1_4:60268232-60268251	Msa0174580:intron	30.0%
	TACTTCTTGGATTTCTTTGA+TGG	+	chr1_4:60268397-60268416	None:intergenic	30.0%
	TGGATACTTGATTTACTTCT+TGG	+	chr1_4:60268410-60268429	None:intergenic	30.0%
!!!	ATTTTGTTGCCATTTTGGTA+TGG	-	chr1_4:60268510-60268529	Msa0174580:five_prime_UTR	30.0%
	GAGATTTCATTGCACTCATT+AGG	+	chr1_4:60266527-60266546	None:intergenic	35.0%
!!!	GGACTCATAAGCTAGTTTTA+AGG	-	chr1_4:60266886-60266905	Msa0174580:CDS	35.0%
!!!	CCCCAATTTTTTCAGTGAAA+AGG	+	chr1_4:60266981-60267000	None:intergenic	35.0%
	GTACCCTAATATGAACTTAG+TGG	-	chr1_4:60267032-60267051	Msa0174580:CDS	35.0%
	TGAGAACCCCCAAATAAATT+GGG	+	chr1_4:60267069-60267088	None:intergenic	35.0%
	ATGAGAACCCCCAAATAAAT+TGG	+	chr1_4:60267070-60267089	None:intergenic	35.0%
!	TAACCAACTTCCTGATGTTT+TGG	+	chr1_4:60267247-60267266	None:intergenic	35.0%
!	AAACATCAGGAAGTTGGTTA+AGG	-	chr1_4:60267247-60267266	Msa0174580:intron	35.0%
	TTAAGGATGGCTTCATTATC+CGG	-	chr1_4:60267264-60267283	Msa0174580:intron	35.0%
	CCATAAAAATACTCGTGTGA+TGG	+	chr1_4:60267606-60267625	None:intergenic	35.0%
!!	CCATCACACGAGTATTTTTA+TGG	-	chr1_4:60267603-60267622	Msa0174580:CDS	35.0%
!	ACTTCACACGAGTATTTCTA+TGG	-	chr1_4:60267724-60267743	Msa0174580:intron	35.0%
!	TAAAAGAAAGGGTACAAGAG+AGG	-	chr1_4:60267815-60267834	Msa0174580:intron	35.0%
	TGATATGTACATGAAGGTGA+AGG	-	chr1_4:60267941-60267960	Msa0174580:intron	35.0%
	GATATGTACATGAAGGTGAA+GGG	-	chr1_4:60267942-60267961	Msa0174580:intron	35.0%
	ACTTGTGAATACTCTCCATA+AGG	+	chr1_4:60267992-60268011	None:intergenic	35.0%
	GACATTATCTGATCAGTTTG+AGG	-	chr1_4:60268037-60268056	Msa0174580:intron	35.0%
!!	TTTTAAAAGGCAGGGTGATA+TGG	+	chr1_4:60268220-60268239	None:intergenic	35.0%
!!!	CCCTGCCTTTTAAAATGTAT+AGG	-	chr1_4:60268225-60268244	Msa0174580:intron	35.0%
!!	CCCTATACATTTTAAAAGGC+AGG	+	chr1_4:60268229-60268248	None:intergenic	35.0%
	TTTAGATACTTACTGGGACT+GGG	+	chr1_4:60268308-60268327	None:intergenic	35.0%
	GAAGTAAATCAAGTATCCAG+AGG	-	chr1_4:60268411-60268430	Msa0174580:CDS	35.0%
	AAATGAAAATACTCGACCTC+TGG	+	chr1_4:60268430-60268449	None:intergenic	35.0%
	AGTGCATTTCCATACCAAAA+TGG	+	chr1_4:60268522-60268541	None:intergenic	35.0%
	TTTGGTATGGAAATGCACTT+TGG	-	chr1_4:60268523-60268542	Msa0174580:five_prime_UTR	35.0%
	GAGATTTCATTGCACTCATT+AGG	+	chr1_4:60266527-60266546	None:intergenic	35.0%
!!!	GGACTCATAAGCTAGTTTTA+AGG	-	chr1_4:60266886-60266905	Msa0174580:CDS	35.0%
!!!	CCCCAATTTTTTCAGTGAAA+AGG	+	chr1_4:60266981-60267000	None:intergenic	35.0%
	GTACCCTAATATGAACTTAG+TGG	-	chr1_4:60267032-60267051	Msa0174580:CDS	35.0%
	TGAGAACCCCCAAATAAATT+GGG	+	chr1_4:60267069-60267088	None:intergenic	35.0%
	ATGAGAACCCCCAAATAAAT+TGG	+	chr1_4:60267070-60267089	None:intergenic	35.0%
!	TAACCAACTTCCTGATGTTT+TGG	+	chr1_4:60267247-60267266	None:intergenic	35.0%
!	AAACATCAGGAAGTTGGTTA+AGG	-	chr1_4:60267247-60267266	Msa0174580:intron	35.0%
	TTAAGGATGGCTTCATTATC+CGG	-	chr1_4:60267264-60267283	Msa0174580:intron	35.0%
	CCATAAAAATACTCGTGTGA+TGG	+	chr1_4:60267606-60267625	None:intergenic	35.0%
!!	CCATCACACGAGTATTTTTA+TGG	-	chr1_4:60267603-60267622	Msa0174580:CDS	35.0%
!	ACTTCACACGAGTATTTCTA+TGG	-	chr1_4:60267724-60267743	Msa0174580:intron	35.0%
!	TAAAAGAAAGGGTACAAGAG+AGG	-	chr1_4:60267815-60267834	Msa0174580:intron	35.0%
	TGATATGTACATGAAGGTGA+AGG	-	chr1_4:60267941-60267960	Msa0174580:intron	35.0%
	GATATGTACATGAAGGTGAA+GGG	-	chr1_4:60267942-60267961	Msa0174580:intron	35.0%
	ACTTGTGAATACTCTCCATA+AGG	+	chr1_4:60267992-60268011	None:intergenic	35.0%
	GACATTATCTGATCAGTTTG+AGG	-	chr1_4:60268037-60268056	Msa0174580:intron	35.0%
!!	TTTTAAAAGGCAGGGTGATA+TGG	+	chr1_4:60268220-60268239	None:intergenic	35.0%
!!!	CCCTGCCTTTTAAAATGTAT+AGG	-	chr1_4:60268225-60268244	Msa0174580:intron	35.0%
!!	CCCTATACATTTTAAAAGGC+AGG	+	chr1_4:60268229-60268248	None:intergenic	35.0%
	TTTAGATACTTACTGGGACT+GGG	+	chr1_4:60268308-60268327	None:intergenic	35.0%
	GAAGTAAATCAAGTATCCAG+AGG	-	chr1_4:60268411-60268430	Msa0174580:CDS	35.0%
	AAATGAAAATACTCGACCTC+TGG	+	chr1_4:60268430-60268449	None:intergenic	35.0%
	AGTGCATTTCCATACCAAAA+TGG	+	chr1_4:60268522-60268541	None:intergenic	35.0%
	TTTGGTATGGAAATGCACTT+TGG	-	chr1_4:60268523-60268542	Msa0174580:five_prime_UTR	35.0%
!	AACTAGGGTTAGTGAGAGAT+AGG	-	chr1_4:60266355-60266374	Msa0174580:three_prime_UTR	40.0%
	TGAGTGCAATGAAATCTCCA+TGG	-	chr1_4:60266529-60266548	Msa0174580:exon	40.0%
	GTAGCAGTAGTTACGTGAAT+TGG	+	chr1_4:60266555-60266574	None:intergenic	40.0%
	TTGAGCATCCCAGTTCATAA+AGG	+	chr1_4:60266953-60266972	None:intergenic	40.0%
	CCAACCAAACCATTTATCAC+AGG	+	chr1_4:60267210-60267229	None:intergenic	40.0%
!!	CCTGTGATAAATGGTTTGGT+TGG	-	chr1_4:60267207-60267226	Msa0174580:intron	40.0%
!	ATCAGGAAGTTGGTTAAGGA+TGG	-	chr1_4:60267251-60267270	Msa0174580:intron	40.0%
!	AGTGAATCTTAGTTGGCTTC+CGG	+	chr1_4:60267286-60267305	None:intergenic	40.0%
!	TCAGTTGTGCGAAGTATTCT+AGG	-	chr1_4:60267528-60267547	Msa0174580:intron	40.0%
	TCTATGGTACTTGCACTATC+AGG	-	chr1_4:60267740-60267759	Msa0174580:intron	40.0%
!!	TCATCCAAAGGATTTTGGTG+GGG	+	chr1_4:60267848-60267867	None:intergenic	40.0%
!!	CTCATCCAAAGGATTTTGGT+GGG	+	chr1_4:60267849-60267868	None:intergenic	40.0%
	TGTCAATCTTCTTTGCCTCT+CGG	+	chr1_4:60267908-60267927	None:intergenic	40.0%
	CAAGAACAAGAGAGTCCTTA+TGG	-	chr1_4:60267974-60267993	Msa0174580:intron	40.0%
	GTTTAGATACTTACTGGGAC+TGG	+	chr1_4:60268309-60268328	None:intergenic	40.0%
	ATTCCTTCCTTTAATTCCCC+TGG	-	chr1_4:60268584-60268603	Msa0174580:five_prime_UTR	40.0%
!	AACTAGGGTTAGTGAGAGAT+AGG	-	chr1_4:60266355-60266374	Msa0174580:three_prime_UTR	40.0%
	TGAGTGCAATGAAATCTCCA+TGG	-	chr1_4:60266529-60266548	Msa0174580:exon	40.0%
	GTAGCAGTAGTTACGTGAAT+TGG	+	chr1_4:60266555-60266574	None:intergenic	40.0%
	TTGAGCATCCCAGTTCATAA+AGG	+	chr1_4:60266953-60266972	None:intergenic	40.0%
	CCAACCAAACCATTTATCAC+AGG	+	chr1_4:60267210-60267229	None:intergenic	40.0%
!!	CCTGTGATAAATGGTTTGGT+TGG	-	chr1_4:60267207-60267226	Msa0174580:intron	40.0%
!	ATCAGGAAGTTGGTTAAGGA+TGG	-	chr1_4:60267251-60267270	Msa0174580:intron	40.0%
!	AGTGAATCTTAGTTGGCTTC+CGG	+	chr1_4:60267286-60267305	None:intergenic	40.0%
!	TCAGTTGTGCGAAGTATTCT+AGG	-	chr1_4:60267528-60267547	Msa0174580:intron	40.0%
	TCTATGGTACTTGCACTATC+AGG	-	chr1_4:60267740-60267759	Msa0174580:intron	40.0%
!!	TCATCCAAAGGATTTTGGTG+GGG	+	chr1_4:60267848-60267867	None:intergenic	40.0%
!!	CTCATCCAAAGGATTTTGGT+GGG	+	chr1_4:60267849-60267868	None:intergenic	40.0%
	TGTCAATCTTCTTTGCCTCT+CGG	+	chr1_4:60267908-60267927	None:intergenic	40.0%
	CAAGAACAAGAGAGTCCTTA+TGG	-	chr1_4:60267974-60267993	Msa0174580:intron	40.0%
	GTTTAGATACTTACTGGGAC+TGG	+	chr1_4:60268309-60268328	None:intergenic	40.0%
	TGTCGCTCAAACTTCAGAAG+CGG	-	chr1_4:60266453-60266472	Msa0174580:three_prime_UTR	45.0%
	GTAGTTACGTGAATTGGCCA+TGG	+	chr1_4:60266549-60266568	None:intergenic	45.0%
	GGAGCCTGTGATAAATGGTT+TGG	-	chr1_4:60267203-60267222	Msa0174580:intron	45.0%
!!	TTTGGTTGGTTTCTCGTTGC+AGG	-	chr1_4:60267221-60267240	Msa0174580:intron	45.0%
	AGGCCAAAACATCAGGAAGT+TGG	-	chr1_4:60267241-60267260	Msa0174580:intron	45.0%
	AAGGGACGTCATTCTGGATA+TGG	-	chr1_4:60267344-60267363	Msa0174580:intron	45.0%
	GGTACTTGCACTATCAGGAT+AGG	-	chr1_4:60267745-60267764	Msa0174580:intron	45.0%
!	CCTCATCCAAAGGATTTTGG+TGG	+	chr1_4:60267850-60267869	None:intergenic	45.0%
	CCACCAAAATCCTTTGGATG+AGG	-	chr1_4:60267847-60267866	Msa0174580:intron	45.0%
!	CCTCCTCATCCAAAGGATTT+TGG	+	chr1_4:60267853-60267872	None:intergenic	45.0%
	CCAAAATCCTTTGGATGAGG+AGG	-	chr1_4:60267850-60267869	Msa0174580:intron	45.0%
!!	GGAGAGTATTCACAAGTCCA+AGG	-	chr1_4:60267995-60268014	Msa0174580:intron	45.0%
!	TGATCAGTTTGAGGCCAAGA+GGG	-	chr1_4:60268046-60268065	Msa0174580:intron	45.0%
	AGAATAAGGCTAGCAGGGAA+AGG	-	chr1_4:60268072-60268091	Msa0174580:intron	45.0%
!!	CTAACCCTAGTTTTTGCTCC+AGG	+	chr1_4:60266347-60266366	None:intergenic	45.0%
	TGTCGCTCAAACTTCAGAAG+CGG	-	chr1_4:60266453-60266472	Msa0174580:three_prime_UTR	45.0%
	GTAGTTACGTGAATTGGCCA+TGG	+	chr1_4:60266549-60266568	None:intergenic	45.0%
	GGAGCCTGTGATAAATGGTT+TGG	-	chr1_4:60267203-60267222	Msa0174580:intron	45.0%
!!	TTTGGTTGGTTTCTCGTTGC+AGG	-	chr1_4:60267221-60267240	Msa0174580:intron	45.0%
	AGGCCAAAACATCAGGAAGT+TGG	-	chr1_4:60267241-60267260	Msa0174580:intron	45.0%
	AAGGGACGTCATTCTGGATA+TGG	-	chr1_4:60267344-60267363	Msa0174580:intron	45.0%
	GGTACTTGCACTATCAGGAT+AGG	-	chr1_4:60267745-60267764	Msa0174580:intron	45.0%
!	CCTCATCCAAAGGATTTTGG+TGG	+	chr1_4:60267850-60267869	None:intergenic	45.0%
	CCACCAAAATCCTTTGGATG+AGG	-	chr1_4:60267847-60267866	Msa0174580:intron	45.0%
!	CCTCCTCATCCAAAGGATTT+TGG	+	chr1_4:60267853-60267872	None:intergenic	45.0%
	CCAAAATCCTTTGGATGAGG+AGG	-	chr1_4:60267850-60267869	Msa0174580:intron	45.0%
!!	GGAGAGTATTCACAAGTCCA+AGG	-	chr1_4:60267995-60268014	Msa0174580:intron	45.0%
!	TGATCAGTTTGAGGCCAAGA+GGG	-	chr1_4:60268046-60268065	Msa0174580:intron	45.0%
	AGAATAAGGCTAGCAGGGAA+AGG	-	chr1_4:60268072-60268091	Msa0174580:intron	45.0%
!	CTCTCTGGTTCGATAACCTG+CGG	+	chr1_4:60266403-60266422	None:intergenic	50.0%
!	ATCGAACCAGAGAGAGTGTG+AGG	-	chr1_4:60266409-60266428	Msa0174580:three_prime_UTR	50.0%
!	TCGAACCAGAGAGAGTGTGA+GGG	-	chr1_4:60266410-60266429	Msa0174580:three_prime_UTR	50.0%
	GGGAGAGAGAAAGAGAGAGA+TGG	-	chr1_4:60266430-60266449	Msa0174580:three_prime_UTR	50.0%
	TGGTGGGAGCCTGTGATAAA+TGG	-	chr1_4:60267198-60267217	Msa0174580:intron	50.0%
	TCGTTGCAGGCCAAAACATC+AGG	-	chr1_4:60267234-60267253	Msa0174580:intron	50.0%
	GAGCGGGAGTGAATCTTAGT+TGG	+	chr1_4:60267293-60267312	None:intergenic	50.0%
	TATGAAGGAGGCCAAGAGGA+AGG	-	chr1_4:60267325-60267344	Msa0174580:intron	50.0%
	ATGAAGGAGGCCAAGAGGAA+GGG	-	chr1_4:60267326-60267345	Msa0174580:intron	50.0%
	AGAATGACGTCCCTTCCTCT+TGG	+	chr1_4:60267339-60267358	None:intergenic	50.0%
	AAGAGGAAGGGACGTCATTC+TGG	-	chr1_4:60267338-60267357	Msa0174580:intron	50.0%
!	GAAAGGGTACAAGAGAGGCT+AGG	-	chr1_4:60267820-60267839	Msa0174580:intron	50.0%
!!	TTTGCTTCGCAAGTACCGAG+AGG	-	chr1_4:60267890-60267909	Msa0174580:intron	50.0%
	TCACAAGTCCAAGGCTGAGA+AGG	-	chr1_4:60268004-60268023	Msa0174580:intron	50.0%
!	CTGATCAGTTTGAGGCCAAG+AGG	-	chr1_4:60268045-60268064	Msa0174580:intron	50.0%
!!	AGCCTTATTCTTCGCCCTCT+TGG	+	chr1_4:60268063-60268082	None:intergenic	50.0%
	GGCGAAGAATAAGGCTAGCA+GGG	-	chr1_4:60268067-60268086	Msa0174580:intron	50.0%
	TGTATAGGGTCCAGGAGAGA+AGG	-	chr1_4:60268240-60268259	Msa0174580:intron	50.0%
!	CTCTCTGGTTCGATAACCTG+CGG	+	chr1_4:60266403-60266422	None:intergenic	50.0%
!	ATCGAACCAGAGAGAGTGTG+AGG	-	chr1_4:60266409-60266428	Msa0174580:three_prime_UTR	50.0%
!	TCGAACCAGAGAGAGTGTGA+GGG	-	chr1_4:60266410-60266429	Msa0174580:three_prime_UTR	50.0%
	GGGAGAGAGAAAGAGAGAGA+TGG	-	chr1_4:60266430-60266449	Msa0174580:three_prime_UTR	50.0%
	TGGTGGGAGCCTGTGATAAA+TGG	-	chr1_4:60267198-60267217	Msa0174580:intron	50.0%
	TCGTTGCAGGCCAAAACATC+AGG	-	chr1_4:60267234-60267253	Msa0174580:intron	50.0%
	GAGCGGGAGTGAATCTTAGT+TGG	+	chr1_4:60267293-60267312	None:intergenic	50.0%
	TATGAAGGAGGCCAAGAGGA+AGG	-	chr1_4:60267325-60267344	Msa0174580:intron	50.0%
	ATGAAGGAGGCCAAGAGGAA+GGG	-	chr1_4:60267326-60267345	Msa0174580:intron	50.0%
	AGAATGACGTCCCTTCCTCT+TGG	+	chr1_4:60267339-60267358	None:intergenic	50.0%
	AAGAGGAAGGGACGTCATTC+TGG	-	chr1_4:60267338-60267357	Msa0174580:intron	50.0%
!	GAAAGGGTACAAGAGAGGCT+AGG	-	chr1_4:60267820-60267839	Msa0174580:intron	50.0%
!!	TTTGCTTCGCAAGTACCGAG+AGG	-	chr1_4:60267890-60267909	Msa0174580:intron	50.0%
	TCACAAGTCCAAGGCTGAGA+AGG	-	chr1_4:60268004-60268023	Msa0174580:intron	50.0%
!	CTGATCAGTTTGAGGCCAAG+AGG	-	chr1_4:60268045-60268064	Msa0174580:intron	50.0%
!!	AGCCTTATTCTTCGCCCTCT+TGG	+	chr1_4:60268063-60268082	None:intergenic	50.0%
	GGCGAAGAATAAGGCTAGCA+GGG	-	chr1_4:60268067-60268086	Msa0174580:intron	50.0%
	TGTATAGGGTCCAGGAGAGA+AGG	-	chr1_4:60268240-60268259	Msa0174580:intron	50.0%
	ATATAGCCTCCTTCCACCGC+AGG	-	chr1_4:60266384-60266403	Msa0174580:three_prime_UTR	55.0%
	GTTCGATAACCTGCGGTGGA+AGG	+	chr1_4:60266396-60266415	None:intergenic	55.0%
!	TCTGGTTCGATAACCTGCGG+TGG	+	chr1_4:60266400-60266419	None:intergenic	55.0%
	TCTCTCCCTCACACTCTCTC+TGG	+	chr1_4:60266418-60266437	None:intergenic	55.0%
	ACCACACTTGAGTACGCTGG+CGG	+	chr1_4:60266483-60266502	None:intergenic	55.0%
	ACGACCACACTTGAGTACGC+TGG	+	chr1_4:60266486-60266505	None:intergenic	55.0%
	AGCGTACTCAAGTGTGGTCG+TGG	-	chr1_4:60266485-60266504	Msa0174580:three_prime_UTR	55.0%
	ACTCAAGTGTGGTCGTGGCA+AGG	-	chr1_4:60266490-60266509	Msa0174580:three_prime_UTR	55.0%
	CTCCTTCATACGCCTAGCAC+GGG	+	chr1_4:60267315-60267334	None:intergenic	55.0%
	CCTCCTTCATACGCCTAGCA+CGG	+	chr1_4:60267316-60267335	None:intergenic	55.0%
	GGCTCCCCACCAAAATCCTT+TGG	-	chr1_4:60267841-60267860	Msa0174580:intron	55.0%
	CACGCATCCTCCTCATCCAA+AGG	+	chr1_4:60267860-60267879	None:intergenic	55.0%
	ACTTGCGAAGCAAACGCCTG+AGG	+	chr1_4:60267884-60267903	None:intergenic	55.0%
!	CTCTCTAGCCTTCTCAGCCT+TGG	+	chr1_4:60268015-60268034	None:intergenic	55.0%
	GGCCAAGAGGGCGAAGAATA+AGG	-	chr1_4:60268058-60268077	Msa0174580:intron	55.0%
	GGGCGAAGAATAAGGCTAGC+AGG	-	chr1_4:60268066-60268085	Msa0174580:intron	55.0%
!	AGCAAAGCGCTCTTCTCTGC+GGG	+	chr1_4:60268105-60268124	None:intergenic	55.0%
!	GAGCAAAGCGCTCTTCTCTG+CGG	+	chr1_4:60268106-60268125	None:intergenic	55.0%
	ATATAGCCTCCTTCCACCGC+AGG	-	chr1_4:60266384-60266403	Msa0174580:three_prime_UTR	55.0%
	GTTCGATAACCTGCGGTGGA+AGG	+	chr1_4:60266396-60266415	None:intergenic	55.0%
!	TCTGGTTCGATAACCTGCGG+TGG	+	chr1_4:60266400-60266419	None:intergenic	55.0%
	TCTCTCCCTCACACTCTCTC+TGG	+	chr1_4:60266418-60266437	None:intergenic	55.0%
	ACCACACTTGAGTACGCTGG+CGG	+	chr1_4:60266483-60266502	None:intergenic	55.0%
	ACGACCACACTTGAGTACGC+TGG	+	chr1_4:60266486-60266505	None:intergenic	55.0%
	AGCGTACTCAAGTGTGGTCG+TGG	-	chr1_4:60266485-60266504	Msa0174580:three_prime_UTR	55.0%
	ACTCAAGTGTGGTCGTGGCA+AGG	-	chr1_4:60266490-60266509	Msa0174580:three_prime_UTR	55.0%
	CTCCTTCATACGCCTAGCAC+GGG	+	chr1_4:60267315-60267334	None:intergenic	55.0%
	CCTCCTTCATACGCCTAGCA+CGG	+	chr1_4:60267316-60267335	None:intergenic	55.0%
	GGCTCCCCACCAAAATCCTT+TGG	-	chr1_4:60267841-60267860	Msa0174580:intron	55.0%
	CACGCATCCTCCTCATCCAA+AGG	+	chr1_4:60267860-60267879	None:intergenic	55.0%
	ACTTGCGAAGCAAACGCCTG+AGG	+	chr1_4:60267884-60267903	None:intergenic	55.0%
!	CTCTCTAGCCTTCTCAGCCT+TGG	+	chr1_4:60268015-60268034	None:intergenic	55.0%
	GGCCAAGAGGGCGAAGAATA+AGG	-	chr1_4:60268058-60268077	Msa0174580:intron	55.0%
	GGGCGAAGAATAAGGCTAGC+AGG	-	chr1_4:60268066-60268085	Msa0174580:intron	55.0%
!	AGCAAAGCGCTCTTCTCTGC+GGG	+	chr1_4:60268105-60268124	None:intergenic	55.0%
!	GAGCAAAGCGCTCTTCTCTG+CGG	+	chr1_4:60268106-60268125	None:intergenic	55.0%
	CGATAACCTGCGGTGGAAGG+AGG	+	chr1_4:60266393-60266412	None:intergenic	60.0%
	AGTGTGGTCGTGGCAAGGTC+TGG	-	chr1_4:60266495-60266514	Msa0174580:three_prime_UTR	60.0%
	TCATACGCCTAGCACGGGAG+CGG	+	chr1_4:60267310-60267329	None:intergenic	60.0%
	CTCCCGTGCTAGGCGTATGA+AGG	-	chr1_4:60267310-60267329	Msa0174580:intron	60.0%
	CCGTGCTAGGCGTATGAAGG+AGG	-	chr1_4:60267313-60267332	Msa0174580:intron	60.0%
	GGCGTATGAAGGAGGCCAAG+AGG	-	chr1_4:60267321-60267340	Msa0174580:intron	60.0%
	TGAGGAGGATGCGTGTCCTC+AGG	-	chr1_4:60267865-60267884	Msa0174580:intron	60.0%
	GCTGCAGGAACCTTCTCTCC+TGG	+	chr1_4:60268253-60268272	None:intergenic	60.0%
!	GGTTGCTGTTGCAGCTGGTG+CGG	+	chr1_4:60268287-60268306	None:intergenic	60.0%
!	GACTGGGTTGCTGTTGCAGC+TGG	+	chr1_4:60268292-60268311	None:intergenic	60.0%
	CGATAACCTGCGGTGGAAGG+AGG	+	chr1_4:60266393-60266412	None:intergenic	60.0%
	AGTGTGGTCGTGGCAAGGTC+TGG	-	chr1_4:60266495-60266514	Msa0174580:three_prime_UTR	60.0%
	TCATACGCCTAGCACGGGAG+CGG	+	chr1_4:60267310-60267329	None:intergenic	60.0%
	CTCCCGTGCTAGGCGTATGA+AGG	-	chr1_4:60267310-60267329	Msa0174580:intron	60.0%
	CCGTGCTAGGCGTATGAAGG+AGG	-	chr1_4:60267313-60267332	Msa0174580:intron	60.0%
	GGCGTATGAAGGAGGCCAAG+AGG	-	chr1_4:60267321-60267340	Msa0174580:intron	60.0%
	TGAGGAGGATGCGTGTCCTC+AGG	-	chr1_4:60267865-60267884	Msa0174580:intron	60.0%
	GCTGCAGGAACCTTCTCTCC+TGG	+	chr1_4:60268253-60268272	None:intergenic	60.0%
!	GGTTGCTGTTGCAGCTGGTG+CGG	+	chr1_4:60268287-60268306	None:intergenic	60.0%
!	GACTGGGTTGCTGTTGCAGC+TGG	+	chr1_4:60268292-60268311	None:intergenic	60.0%
	GCCGCCAGCGTACTCAAGTG+TGG	-	chr1_4:60266479-60266498	Msa0174580:three_prime_UTR	65.0%
	TGGTCGTGGCAAGGTCTGGC+TGG	-	chr1_4:60266499-60266518	Msa0174580:three_prime_UTR	65.0%
	TTCACTCCCGCTCCCGTGCT+AGG	-	chr1_4:60267300-60267319	Msa0174580:intron	65.0%
	CATACGCCTAGCACGGGAGC+GGG	+	chr1_4:60267309-60267328	None:intergenic	65.0%
	GCCGCCAGCGTACTCAAGTG+TGG	-	chr1_4:60266479-60266498	Msa0174580:three_prime_UTR	65.0%
	TGGTCGTGGCAAGGTCTGGC+TGG	-	chr1_4:60266499-60266518	Msa0174580:three_prime_UTR	65.0%
	TTCACTCCCGCTCCCGTGCT+AGG	-	chr1_4:60267300-60267319	Msa0174580:intron	65.0%
	CATACGCCTAGCACGGGAGC+GGG	+	chr1_4:60267309-60267328	None:intergenic	65.0%
	GCTGTTGCAGCTGGTGCGGC+TGG	+	chr1_4:60268283-60268302	None:intergenic	70.0%
	GCTGTTGCAGCTGGTGCGGC+TGG	+	chr1_4:60268283-60268302	None:intergenic	70.0%
!!	GCGGCTGGTGCTGCAGCTGC+AGG	+	chr1_4:60268268-60268287	None:intergenic	75.0%
!!	GCGGCTGGTGCTGCAGCTGC+AGG	+	chr1_4:60268268-60268287	None:intergenic	75.0%

Chromosome	Type	Strat	End	Strand	Name
chr1_4	gene	60266347	60268604	60266347	ID=Msa0174580;Name=Msa0174580
chr1_4	mRNA	60266347	60268604	60266347	ID=Msa0174580-mRNA-1;Parent=Msa0174580;Name=Msa0174580-mRNA-1;_AED=0.00;_eAED=0.00;_QI=102\|1\|1\|1\|1\|1\|5\|187\|213
chr1_4	exon	60266347	60266558	60266347	ID=Msa0174580-mRNA-1:exon:19039;Parent=Msa0174580-mRNA-1
chr1_4	exon	60266637	60266704	60266637	ID=Msa0174580-mRNA-1:exon:19038;Parent=Msa0174580-mRNA-1
chr1_4	exon	60266824	60267137	60266824	ID=Msa0174580-mRNA-1:exon:19037;Parent=Msa0174580-mRNA-1
chr1_4	exon	60267586	60267708	60267586	ID=Msa0174580-mRNA-1:exon:19036;Parent=Msa0174580-mRNA-1
chr1_4	exon	60268391	60268604	60268391	ID=Msa0174580-mRNA-1:exon:19035;Parent=Msa0174580-mRNA-1
chr1_4	five_prime_UTR	60268503	60268604	60268503	ID=Msa0174580-mRNA-1:five_prime_utr;Parent=Msa0174580-mRNA-1
chr1_4	CDS	60268391	60268502	60268391	ID=Msa0174580-mRNA-1:cds;Parent=Msa0174580-mRNA-1
chr1_4	CDS	60267586	60267708	60267586	ID=Msa0174580-mRNA-1:cds;Parent=Msa0174580-mRNA-1
chr1_4	CDS	60266824	60267137	60266824	ID=Msa0174580-mRNA-1:cds;Parent=Msa0174580-mRNA-1
chr1_4	CDS	60266637	60266704	60266637	ID=Msa0174580-mRNA-1:cds;Parent=Msa0174580-mRNA-1
chr1_4	CDS	60266534	60266558	60266534	ID=Msa0174580-mRNA-1:cds;Parent=Msa0174580-mRNA-1
chr1_4	three_prime_UTR	60266347	60266533	60266347	ID=Msa0174580-mRNA-1:three_prime_utr;Parent=Msa0174580-mRNA-1

Gene Sequence

>Msa0174580

ATGGTGTCGCTCAAACTTCAGAAGCGGCTCGCCGCCAGCGTACTCAAGTGTGGTCGTGGCAAGGTCTGGCTGGACCCTAATGAGTGCAATGAAATCTCCATGGCCAATTCACGCCAAAACATCAGGAAGTTGGTTAAGGATGGCTTCATTATCCGGAAGCCAACTAAGATTCACTCCCGCTCCCGTGCTAGGCGTATGAAGGAGGCCAAGAGGAAGGGACGTCATTCTGGATATGGTAAAAGAAAGGGTACAAGAGAGGCTAGGCTCCCCACCAAAATCCTTTGGATGAGGAGGATGCGTGTCCTCAGGCGTTTGCTTCGCAAGTACCGAGAGGCAAAGAAGATTGACAAACATATGTATCATGATATGTACATGAAGGTGAAGGGAAATGTCTTCAAGAACAAGAGAGTCCTTATGGAGAGTATTCACAAGTCCAAGGCTGAGAAGGCTAGAGAGAAGACATTATCTGATCAGTTTGAGGCCAAGAGGGCGAAGAATAAGGCTAGCAGGGAAAGGAAGCATGCCCGCAGAGAAGAGCGCTTTGCTCAAGGTCCAGGAGAGAAGGTTCCTGCAGCTGCAGCACCAGCCGCACCAGCTGCAACAGCAACCCAGTCCCAACCATCAAAGAAATCCAAGAAGTAA

Protein sequence

>Msa0174580

MVSLKLQKRLAASVLKCGRGKVWLDPNECNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYREAKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKHARREERFAQGPGEKVPAAAAPAAPAATATQSQPSKKSKK*