AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1125900

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1125900 MtrunA17_Chr7g0266721 98.780 164 2 0 1 164 1 164 1.55e-121 339
Msa1125900 MtrunA17_Chr8g0351571 50.331 151 75 0 12 162 3 153 2.26e-53 166
Msa1125900 MtrunA17_Chr2g0321111 52.597 154 72 1 10 162 461 614 1.75e-52 176
Msa1125900 MtrunA17_Chr5g0401141 52.055 146 70 0 12 157 347 492 1.46e-49 167
Msa1125900 MtrunA17_Chr2g0288371 53.247 154 70 2 11 162 14 167 5.05e-43 149
Msa1125900 MtrunA17_Chr1g0193711 50.336 149 68 5 17 160 97 244 4.46e-40 135
Msa1125900 MtrunA17_Chr1g0213971 49.306 144 68 4 18 157 93 235 1.02e-39 134
Msa1125900 MtrunA17_Chr7g0270991 50.000 146 68 4 17 158 108 252 2.18e-39 134
Msa1125900 MtrunA17_Chr4g0045321 48.684 152 65 4 19 158 18 168 4.13e-38 133
Msa1125900 MtrunA17_Chr6g0484281 42.138 159 84 2 12 162 3 161 5.09e-37 134
Msa1125900 MtrunA17_Chr8g0353571 47.552 143 64 4 19 151 32 173 5.65e-37 125
Msa1125900 MtrunA17_Chr7g0274841 47.973 148 65 4 19 155 18 164 9.14e-37 124
Msa1125900 MtrunA17_Chr8g0374621 44.242 165 74 5 10 157 4 167 1.32e-36 129
Msa1125900 MtrunA17_Chr8g0357591 41.509 159 85 2 12 162 3 161 1.30e-35 130
Msa1125900 MtrunA17_Chr3g0145501 51.079 139 52 5 18 143 25 160 4.71e-35 120
Msa1125900 MtrunA17_Chr4g0038431 48.684 152 57 6 10 143 4 152 9.09e-35 119
Msa1125900 MtrunA17_Chr3g0104751 49.624 133 55 4 19 140 48 179 1.07e-34 120
Msa1125900 MtrunA17_Chr7g0260441 47.297 148 64 5 23 158 25 170 5.47e-34 125
Msa1125900 MtrunA17_Chr3g0113441 48.889 135 57 4 17 140 76 209 3.94e-33 117
Msa1125900 MtrunA17_Chr4g0037281 40.945 127 63 3 22 137 64 189 2.61e-26 99.4
Msa1125900 MtrunA17_Chr1g0199071 33.113 151 95 2 13 163 83 227 2.38e-23 92.0
Msa1125900 MtrunA17_Chr3g0138061 38.286 175 89 6 1 158 1 173 5.14e-21 89.0
Msa1125900 MtrunA17_Chr1g0163031 30.263 152 99 3 13 163 82 227 1.09e-19 82.4
Msa1125900 MtrunA17_Chr1g0149061 42.424 132 62 4 24 143 26 155 4.55e-19 83.2
Msa1125900 MtrunA17_Chr3g0122871 46.875 64 34 0 88 151 56 119 1.36e-13 63.5
Msa1125900 MtrunA17_Chr5g0416441 31.544 149 84 5 8 145 24 165 9.38e-13 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1125900 AT2G36130.1 86.585 164 22 0 1 164 1 164 3.06e-106 301
Msa1125900 AT1G01940.1 50.331 151 75 0 12 162 3 153 3.80e-53 166
Msa1125900 AT3G44600.1 52.500 160 75 1 4 162 469 628 7.84e-53 177
Msa1125900 AT5G67530.1 49.669 151 76 0 12 162 346 496 1.99e-49 167
Msa1125900 AT4G33060.1 50.968 155 73 3 11 162 14 168 4.50e-44 152
Msa1125900 AT3G62030.3 51.748 143 64 3 19 157 108 249 1.97e-38 132
Msa1125900 AT3G62030.1 51.748 143 64 3 19 157 109 250 2.06e-38 132
Msa1125900 AT1G53720.2 40.994 161 87 3 12 164 3 163 6.50e-38 133
Msa1125900 AT3G62030.2 51.748 143 64 3 19 157 162 303 8.02e-38 132
Msa1125900 AT5G13120.2 48.252 143 69 4 19 157 103 244 1.32e-37 129
Msa1125900 AT5G13120.1 48.252 143 69 4 19 157 107 248 1.61e-37 129
Msa1125900 AT2G21130.1 46.914 162 66 6 7 157 14 166 8.75e-37 125
Msa1125900 AT4G38740.1 48.000 150 65 5 19 157 18 165 1.83e-36 124
Msa1125900 AT3G56070.1 50.360 139 57 3 19 146 18 155 2.68e-36 124
Msa1125900 AT3G56070.2 50.360 139 57 3 19 146 18 155 2.68e-36 124
Msa1125900 AT1G53720.1 40.994 161 87 3 12 164 3 163 2.80e-36 131
Msa1125900 AT2G15790.1 47.020 151 67 4 19 157 18 167 4.64e-36 128
Msa1125900 AT3G63400.2 45.181 166 72 5 10 158 7 170 1.54e-35 127
Msa1125900 AT2G29960.1 48.889 135 57 4 17 140 44 177 3.86e-35 122
Msa1125900 AT2G29960.3 48.889 135 57 4 17 140 44 177 3.86e-35 122
Msa1125900 AT4G34870.1 47.586 145 60 4 16 147 15 156 4.83e-35 120
Msa1125900 AT2G38730.1 46.012 163 72 6 10 157 32 193 6.02e-35 121
Msa1125900 AT2G16600.1 48.344 151 60 6 17 152 17 164 7.67e-35 120
Msa1125900 AT3G55920.1 44.444 153 72 4 19 160 73 223 2.36e-34 120
Msa1125900 AT3G63400.3 45.181 166 72 5 10 158 7 170 3.13e-34 126
Msa1125900 AT3G63400.4 45.181 166 72 5 10 158 7 170 3.13e-34 126
Msa1125900 AT3G63400.1 45.181 166 72 5 10 158 7 170 3.13e-34 126
Msa1125900 AT5G58710.1 47.407 135 59 3 17 140 47 180 4.84e-33 116
Msa1125900 AT2G29960.2 44.444 135 53 5 17 140 44 167 1.23e-27 102
Msa1125900 AT2G16600.2 45.070 142 56 5 17 152 17 142 5.11e-27 99.8
Msa1125900 AT4G34960.1 40.310 129 65 4 18 135 60 187 3.84e-25 96.7
Msa1125900 AT2G47320.1 30.000 150 101 2 13 162 81 226 3.13e-19 81.3
Msa1125900 AT4G34960.2 41.121 107 51 3 18 113 60 165 4.03e-19 79.7
Msa1125900 AT4G32420.1 35.465 172 92 6 5 159 2 171 2.73e-18 81.3
Msa1125900 AT4G32420.5 35.465 172 92 6 5 159 2 171 2.73e-18 81.3
Msa1125900 AT4G32420.3 35.465 172 92 6 5 159 2 171 2.73e-18 81.3
Msa1125900 AT4G32420.6 35.465 172 92 6 5 159 2 171 2.73e-18 81.3
Msa1125900 AT4G32420.4 34.911 169 91 6 5 156 2 168 1.96e-16 76.3
Msa1125900 AT3G66654.4 28.261 138 98 1 14 151 85 221 5.23e-16 73.2
Msa1125900 AT3G66654.2 28.261 138 98 1 14 151 85 221 5.23e-16 73.2
Msa1125900 AT3G66654.3 28.261 138 98 1 14 151 85 221 5.23e-16 73.2
Msa1125900 AT3G66654.1 28.261 138 98 1 14 151 85 221 5.23e-16 73.2
Msa1125900 AT3G66654.5 28.261 138 98 1 14 151 85 221 5.23e-16 73.2
Msa1125900 AT1G53780.2 41.667 84 48 1 80 162 4 87 1.06e-15 73.9
Msa1125900 AT1G26940.1 30.952 168 105 5 6 164 28 193 4.75e-13 64.7
Msa1125900 AT1G26940.2 30.247 162 102 5 12 164 3 162 9.31e-12 60.8

Find 70 sgRNAs with CRISPR-Local

Find 211 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGAAAGACATAAATTTATT+TGG 0.107913 7_3:+77379019 None:intergenic
AACTGACTTCCGTTAGTATT+AGG 0.209355 7_3:+77381024 None:intergenic
TCTCGCACCGTGCCCCTCTT+TGG 0.259093 7_3:-77380992 Msa1125900:CDS
ATGAAGTTCCTACAAGTTCT+AGG 0.269440 7_3:+77381691 None:intergenic
ACTGACTTCCGTTAGTATTA+GGG 0.308819 7_3:+77381025 None:intergenic
ACCTGTCATTGTTATCTGTT+TGG 0.338632 7_3:+77380110 None:intergenic
ATGTTTATGACCTATCGTTT+TGG 0.344336 7_3:-77379059 Msa1125900:three_prime_UTR
AGAGGAGGAGAATCCATCTA+TGG 0.352009 7_3:-77381483 Msa1125900:CDS
CCAGGAAAACACACAATATT+CGG 0.372270 7_3:-77380178 Msa1125900:intron
ATGCACCACCACCGCTCTAA+TGG 0.390345 7_3:-77378927 Msa1125900:three_prime_UTR
TAGTTCGAACATCGACATAT+TGG 0.394275 7_3:+77378856 None:intergenic
AGTTAAAGCATACCCATAGA+TGG 0.430770 7_3:+77381470 None:intergenic
ACATAAATTTATTTGGAACT+TGG 0.432020 7_3:+77379026 None:intergenic
AATATTCGGAAGAGTAAGTC+GGG 0.456454 7_3:-77380164 Msa1125900:CDS
GGTGGGGATCCCACTGGGAC+AGG 0.457978 7_3:-77381507 Msa1125900:CDS
GATCCCACTGGGACAGGAAG+AGG 0.463282 7_3:-77381501 Msa1125900:CDS
AAGCGCAGAAGGTGGTGCTC+CGG 0.493778 7_3:-77381863 Msa1125900:CDS
TGGTGGTTCGAGATGTTTGT+TGG 0.501946 7_3:+77378787 None:intergenic
CTGTCATGCACGATTGACAT+AGG 0.502222 7_3:-77378987 Msa1125900:three_prime_UTR
CTGCACCATTAGAGCGGTGG+TGG 0.508784 7_3:+77378922 None:intergenic
GAGCTGAAGCACACTGGAGC+TGG 0.513405 7_3:-77381072 Msa1125900:CDS
CCTCCTCTTCCTGTCCCAGT+GGG 0.517919 7_3:+77381498 None:intergenic
GATAAATTACCATCCAAAGA+GGG 0.534312 7_3:+77380979 None:intergenic
GCACCGTGCCCCTCTTTGGA+TGG 0.536332 7_3:-77380988 Msa1125900:intron
CGCAGAAGGTGGTGCTCCGG+AGG 0.537673 7_3:-77381860 Msa1125900:CDS
CGGAAGAGTAAGTCGGGGAA+TGG 0.538120 7_3:-77380158 Msa1125900:CDS
AAAATGTGGGCAAGCGCAGA+AGG 0.539071 7_3:-77381874 Msa1125900:CDS
GAGAGAGATAGAGAGAGTGA+AGG 0.541646 7_3:-77381924 Msa1125900:five_prime_UTR
GAGTAGGATTTCATAGTACA+AGG 0.541774 7_3:-77381528 Msa1125900:intron
ATCGCTGACATAGTTACGAC+TGG 0.547963 7_3:-77379172 Msa1125900:three_prime_UTR
CAAACTGATTACAATTTGAT+CGG 0.548189 7_3:+77378827 None:intergenic
AGGATTTCATAGTACAAGGT+GGG 0.556519 7_3:-77381524 Msa1125900:CDS
TCCGTAGTATCTTCACATCA+TGG 0.557400 7_3:+77379258 None:intergenic
TTGGTTCATGCATCAGAGGA+TGG 0.560824 7_3:+77378875 None:intergenic
TCCAAACAGATAACAATGAC+AGG 0.562883 7_3:-77380111 Msa1125900:intron
TCCTCCTCTTCCTGTCCCAG+TGG 0.564512 7_3:+77381497 None:intergenic
AATAATAATAATTACCTCGA+CGG 0.570411 7_3:+77381807 None:intergenic
TACAAGGTGGGGATCCCACT+GGG 0.581439 7_3:-77381512 Msa1125900:CDS
GGTTACTCTAGAAACTTCCA+TGG 0.582783 7_3:-77381839 Msa1125900:CDS
TAGTATCTTCACATCATGGA+CGG 0.585917 7_3:+77379262 None:intergenic
GTACAAGGTGGGGATCCCAC+TGG 0.586480 7_3:-77381513 Msa1125900:CDS
AGTATCTTCACATCATGGAC+GGG 0.587817 7_3:+77379263 None:intergenic
AGCATGCACCTAGAACTTGT+AGG 0.588442 7_3:-77381699 Msa1125900:CDS
AAACAAGAGCTGAAGCACAC+TGG 0.591406 7_3:-77381078 Msa1125900:CDS
TCCATGATGTGAAGATACTA+CGG 0.592850 7_3:-77379259 Msa1125900:CDS
CATATTGGTTCATGCATCAG+AGG 0.596734 7_3:+77378871 None:intergenic
GAGGAGGAGAATCCATCTAT+GGG 0.597355 7_3:-77381482 Msa1125900:intron
CAATATTCGGAAGAGTAAGT+CGG 0.597820 7_3:-77380165 Msa1125900:CDS
TAAGTTCCACAGAATCATCA+AGG 0.601613 7_3:-77381635 Msa1125900:intron
AGATAAATTACCATCCAAAG+AGG 0.606617 7_3:+77380978 None:intergenic
ATGGAAATCATCAAAAGACT+TGG 0.607942 7_3:-77380139 Msa1125900:CDS
GAAGTTTCTAGAGTAACCTC+CGG 0.610654 7_3:+77381844 None:intergenic
AAGTACAGTTCCAAAACGAT+AGG 0.613096 7_3:+77379049 None:intergenic
CCCACTGGGACAGGAAGAGG+AGG 0.622286 7_3:-77381498 Msa1125900:CDS
CTCGACGGTGAATGAACCCA+TGG 0.626061 7_3:+77381822 None:intergenic
GGATTTCATAGTACAAGGTG+GGG 0.626995 7_3:-77381523 Msa1125900:CDS
TTCATTGAACTATCTCGTAG+AGG 0.631851 7_3:-77381673 Msa1125900:CDS
TGAATACCTTGATGATTCTG+TGG 0.644502 7_3:+77381629 None:intergenic
AATGCTGGCCCTAATACTAA+CGG 0.646655 7_3:-77381033 Msa1125900:CDS
TAGGATTTCATAGTACAAGG+TGG 0.656984 7_3:-77381525 Msa1125900:CDS
GATACTACGGACATCAGTCA+AGG 0.657156 7_3:-77379246 Msa1125900:CDS
ATGTGGGCAAGCGCAGAAGG+TGG 0.657684 7_3:-77381871 Msa1125900:CDS
CATGGGTTCATTCACCGTCG+AGG 0.657749 7_3:-77381821 Msa1125900:intron
GTTACTCTAGAAACTTCCAT+GGG 0.658204 7_3:-77381838 Msa1125900:CDS
TTACCATCCAAAGAGGGGCA+CGG 0.666255 7_3:+77380985 None:intergenic
ATAAATTACCATCCAAAGAG+GGG 0.671498 7_3:+77380980 None:intergenic
TGAAGTCTGCACCATTAGAG+CGG 0.675093 7_3:+77378916 None:intergenic
AAAACGATAGGTCATAAACA+TGG 0.677534 7_3:+77379061 None:intergenic
AGTCTGCACCATTAGAGCGG+TGG 0.686654 7_3:+77378919 None:intergenic
ATATTCGGAAGAGTAAGTCG+GGG 0.743686 7_3:-77380163 Msa1125900:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTTTTAACATTTTTTTTTTT+TGG - chr7_3:77378983-77379002 Msa1125900:three_prime_UTR 10.0%
!!! ATTTTGTCTTAAAATTTAGA+TGG - chr7_3:77379141-77379160 Msa1125900:three_prime_UTR 15.0%
!! TTATATATAGTATCTGTAAA+TGG + chr7_3:77380661-77380680 None:intergenic 15.0%
!!! GGTCTAAAATTTAAAAATAT+AGG - chr7_3:77380884-77380903 Msa1125900:intron 15.0%
!!! TTTTAACTATCATGTTATAA+GGG - chr7_3:77381275-77381294 Msa1125900:intron 15.0%
!! AATAATAATAATTACCTCGA+CGG + chr7_3:77378919-77378938 None:intergenic 20.0%
!!! GTGTTGTTTTTTAATTACAT+TGG - chr7_3:77379163-77379182 Msa1125900:three_prime_UTR 20.0%
!! TAATCGTGTTATCATAATAT+GGG - chr7_3:77379302-77379321 Msa1125900:intron 20.0%
!! AAATGAAGTTGTTTATTCAA+AGG - chr7_3:77379532-77379551 Msa1125900:intron 20.0%
!! AATGAAGTTGTTTATTCAAA+GGG - chr7_3:77379533-77379552 Msa1125900:intron 20.0%
!! AATTTCCAAAGTAAAATAGA+AGG + chr7_3:77379778-77379797 None:intergenic 20.0%
!! TGGAAATTATTAATACATGT+TGG - chr7_3:77379790-77379809 Msa1125900:intron 20.0%
!! TTAAATAAGCTCTACTTATA+TGG + chr7_3:77379885-77379904 None:intergenic 20.0%
!! AAAAATGTAAAGATAAAACG+AGG + chr7_3:77380026-77380045 None:intergenic 20.0%
!! ATGATTAAATAGCAATATAG+AGG + chr7_3:77380112-77380131 None:intergenic 20.0%
!! AATAAACATATATGCCAAAA+CGG - chr7_3:77380275-77380294 Msa1125900:intron 20.0%
!!! AATTCATATAGTGAAACTTT+TGG - chr7_3:77380491-77380510 Msa1125900:intron 20.0%
!! ATCATAAAATTGCTAGTATT+GGG - chr7_3:77380730-77380749 Msa1125900:intron 20.0%
!!! TATATGATACTGATAATGTT+GGG - chr7_3:77380753-77380772 Msa1125900:intron 20.0%
!! TTTAAAAATATAGGATCAGA+AGG - chr7_3:77380893-77380912 Msa1125900:intron 20.0%
!! TACATTTAAATAAAACACGT+TGG - chr7_3:77380943-77380962 Msa1125900:intron 20.0%
!! TTAAAACTAGCGTATAATAA+GGG + chr7_3:77381261-77381280 None:intergenic 20.0%
!!! GTTTTAACTATCATGTTATA+AGG - chr7_3:77381274-77381293 Msa1125900:intron 20.0%
!!! CAAATATGTCAATTTTTTCA+AGG + chr7_3:77381419-77381438 None:intergenic 20.0%
!!! AGCATAAAAATTGTAACTTT+TGG - chr7_3:77381607-77381626 Msa1125900:intron 20.0%
!!! ACATAAATTTATTTGGAACT+TGG + chr7_3:77381700-77381719 None:intergenic 20.0%
!! CTGAAAGACATAAATTTATT+TGG + chr7_3:77381707-77381726 None:intergenic 20.0%
! AATAACGAACAATGAAAATG+TGG + chr7_3:77379124-77379143 None:intergenic 25.0%
! GTAATCGTGTTATCATAATA+TGG - chr7_3:77379301-77379320 Msa1125900:intron 25.0%
!! TATCATAATATGGGTTTGTT+TGG - chr7_3:77379311-77379330 Msa1125900:intron 25.0%
!! ACATGTTCATAAACTGTTTT+CGG - chr7_3:77379386-77379405 Msa1125900:intron 25.0%
! ATGAAGTTGTTTATTCAAAG+GGG - chr7_3:77379534-77379553 Msa1125900:intron 25.0%
!! TTCTTCCTTCTATTTTACTT+TGG - chr7_3:77379770-77379789 Msa1125900:intron 25.0%
!!! TAGATGATTTGGTGATTATA+TGG + chr7_3:77380082-77380101 None:intergenic 25.0%
!!! GAGGATTTTTTTAGATGATT+TGG + chr7_3:77380093-77380112 None:intergenic 25.0%
! TCATTATGTAATGTAATCTG+AGG - chr7_3:77380128-77380147 Msa1125900:CDS 25.0%
! TGCTTATAGTAATATGAATG+TGG - chr7_3:77380182-77380201 Msa1125900:intron 25.0%
!!! AAGTGTCATTAAACTGTTTT+AGG + chr7_3:77380697-77380716 None:intergenic 25.0%
! TTAATGACACTTTGTGATAT+TGG - chr7_3:77380705-77380724 Msa1125900:intron 25.0%
! TAATGACACTTTGTGATATT+GGG - chr7_3:77380706-77380725 Msa1125900:intron 25.0%
! GATCATAAAATTGCTAGTAT+TGG - chr7_3:77380729-77380748 Msa1125900:intron 25.0%
!! GTATATGATACTGATAATGT+TGG - chr7_3:77380752-77380771 Msa1125900:intron 25.0%
!! TCAATTACAAGCAAAGTTTT+TGG - chr7_3:77380839-77380858 Msa1125900:intron 25.0%
!! CAATTACAAGCAAAGTTTTT+GGG - chr7_3:77380840-77380859 Msa1125900:intron 25.0%
! ATGTAAATTGAATATGCACA+AGG + chr7_3:77380928-77380947 None:intergenic 25.0%
!!! AACTACTTTTTGTTCCATTT+TGG + chr7_3:77381137-77381156 None:intergenic 25.0%
! AATGGAACAAAAAGTAGTTA+TGG - chr7_3:77381138-77381157 Msa1125900:intron 25.0%
! ATGGAACAAAAAGTAGTTAT+GGG - chr7_3:77381139-77381158 Msa1125900:intron 25.0%
! GTTAAAACTAGCGTATAATA+AGG + chr7_3:77381262-77381281 None:intergenic 25.0%
! TTTCATAAAATTCCATTTCC+TGG + chr7_3:77381307-77381326 None:intergenic 25.0%
! CCAAGAAAAAAAGTTCATAA+AGG + chr7_3:77381377-77381396 None:intergenic 25.0%
!!! CCTTTATGAACTTTTTTTCT+TGG - chr7_3:77381374-77381393 Msa1125900:intron 25.0%
!!! TGTTCTATTTCTACTTATTC+AGG - chr7_3:77381437-77381456 Msa1125900:intron 25.0%
! CAAACTGATTACAATTTGAT+CGG + chr7_3:77381899-77381918 None:intergenic 25.0%
!!! TGTGTTTTGAGAGAAAAATG+TGG - chr7_3:77378835-77378854 Msa1125900:three_prime_UTR 30.0%
!!! GTGTTTTGAGAGAAAAATGT+GGG - chr7_3:77378836-77378855 Msa1125900:three_prime_UTR 30.0%
TTAAACCCTGATACAGAATT+AGG - chr7_3:77378960-77378979 Msa1125900:three_prime_UTR 30.0%
TAAACCCTGATACAGAATTA+GGG - chr7_3:77378961-77378980 Msa1125900:three_prime_UTR 30.0%
AAAACCCTAATTCTGTATCA+GGG + chr7_3:77378968-77378987 None:intergenic 30.0%
TAAAACCCTAATTCTGTATC+AGG + chr7_3:77378969-77378988 None:intergenic 30.0%
!!! ACATTGGTTTTTTGTTGAGT+AGG - chr7_3:77379179-77379198 Msa1125900:three_prime_UTR 30.0%
! TAATATGGGTTTGTTTGGAT+CGG - chr7_3:77379316-77379335 Msa1125900:intron 30.0%
ATCAACTGACATAAACTGTT+TGG - chr7_3:77379352-77379371 Msa1125900:intron 30.0%
TCAACTGACATAAACTGTTT+GGG - chr7_3:77379353-77379372 Msa1125900:intron 30.0%
! CATTTTTGTATAAGCTGTCT+TGG + chr7_3:77379430-77379449 None:intergenic 30.0%
TGAAGTTGTTTATTCAAAGG+GGG - chr7_3:77379535-77379554 Msa1125900:intron 30.0%
!! TTTAGCCACTTTGTTGTTTA+TGG - chr7_3:77379597-77379616 Msa1125900:intron 30.0%
! ATTTTATCAATGGCTAATGC+TGG - chr7_3:77379675-77379694 Msa1125900:intron 30.0%
ATAAATTACCATCCAAAGAG+GGG + chr7_3:77379746-77379765 None:intergenic 30.0%
GATAAATTACCATCCAAAGA+GGG + chr7_3:77379747-77379766 None:intergenic 30.0%
AGATAAATTACCATCCAAAG+AGG + chr7_3:77379748-77379767 None:intergenic 30.0%
CCAAACAAAAATCATCAACA+AGG + chr7_3:77379817-77379836 None:intergenic 30.0%
!!! CCTTGTTGATGATTTTTGTT+TGG - chr7_3:77379814-77379833 Msa1125900:intron 30.0%
CCAAAAACAAACCAATAGTT+GGG + chr7_3:77379920-77379939 None:intergenic 30.0%
TCCAAAAACAAACCAATAGT+TGG + chr7_3:77379921-77379940 None:intergenic 30.0%
AAATTTGAACCCAATAAGCA+TGG + chr7_3:77379951-77379970 None:intergenic 30.0%
! GTTTCATTGACTAAATCTGT+AGG - chr7_3:77380326-77380345 Msa1125900:intron 30.0%
TGTAGGAATGCAAAAAACAA+GGG - chr7_3:77380343-77380362 Msa1125900:intron 30.0%
TCGTAGTAAGTAACAATTGT+AGG + chr7_3:77380407-77380426 None:intergenic 30.0%
ATCATCTGATGCTAATGTTA+TGG + chr7_3:77380461-77380480 None:intergenic 30.0%
ATGGAAATCATCAAAAGACT+TGG - chr7_3:77380584-77380603 Msa1125900:intron 30.0%
AATGACACTTTGTGATATTG+GGG - chr7_3:77380707-77380726 Msa1125900:intron 30.0%
AAATAAAACACGTTGGATCT+AGG - chr7_3:77380950-77380969 Msa1125900:intron 30.0%
ATCTAGGTTTGGATATATAG+TGG - chr7_3:77380966-77380985 Msa1125900:intron 30.0%
TTGGATATATAGTGGCTAAT+TGG - chr7_3:77380974-77380993 Msa1125900:intron 30.0%
TGGATATATAGTGGCTAATT+GGG - chr7_3:77380975-77380994 Msa1125900:intron 30.0%
! AAAACCGAGATTTTGTGTAA+AGG - chr7_3:77381058-77381077 Msa1125900:CDS 30.0%
GATGCCACAAAATAAGTTAA+AGG - chr7_3:77381170-77381189 Msa1125900:intron 30.0%
!!! TGGTCCTTTAACTTATTTTG+TGG + chr7_3:77381177-77381196 None:intergenic 30.0%
AAAGGACCAAATGTATGATT+TGG - chr7_3:77381188-77381207 Msa1125900:intron 30.0%
AAGGACCAAATGTATGATTT+GGG - chr7_3:77381189-77381208 Msa1125900:intron 30.0%
GAAAAATGTCATGGCATATT+TGG - chr7_3:77381573-77381592 Msa1125900:intron 30.0%
!!! GGTTTTTAGTTTTCATTGTG+TGG + chr7_3:77381644-77381663 None:intergenic 30.0%
AAAACGATAGGTCATAAACA+TGG + chr7_3:77381665-77381684 None:intergenic 30.0%
! ATGTTTATGACCTATCGTTT+TGG - chr7_3:77381664-77381683 Msa1125900:CDS 30.0%
! GTTACTCTAGAAACTTCCAT+GGG - chr7_3:77378885-77378904 Msa1125900:three_prime_UTR 35.0%
ATGAAGTTCCTACAAGTTCT+AGG + chr7_3:77379035-77379054 None:intergenic 35.0%
TTCATTGAACTATCTCGTAG+AGG - chr7_3:77379050-77379069 Msa1125900:three_prime_UTR 35.0%
TAAGTTCCACAGAATCATCA+AGG - chr7_3:77379088-77379107 Msa1125900:three_prime_UTR 35.0%
! TGAATACCTTGATGATTCTG+TGG + chr7_3:77379097-77379116 None:intergenic 35.0%
GAGTAGGATTTCATAGTACA+AGG - chr7_3:77379195-77379214 Msa1125900:three_prime_UTR 35.0%
TAGGATTTCATAGTACAAGG+TGG - chr7_3:77379198-77379217 Msa1125900:three_prime_UTR 35.0%
AGGATTTCATAGTACAAGGT+GGG - chr7_3:77379199-77379218 Msa1125900:three_prime_UTR 35.0%
AGTTAAAGCATACCCATAGA+TGG + chr7_3:77379256-77379275 None:intergenic 35.0%
CAACTGACATAAACTGTTTG+GGG - chr7_3:77379354-77379373 Msa1125900:intron 35.0%
AACTGACATAAACTGTTTGG+GGG - chr7_3:77379355-77379374 Msa1125900:intron 35.0%
TAAGTCACCCAAAAAAACCT+AGG + chr7_3:77379561-77379580 None:intergenic 35.0%
! TGGAGCTGGTATTTTATCAA+TGG - chr7_3:77379665-77379684 Msa1125900:intron 35.0%
! ACTGACTTCCGTTAGTATTA+GGG + chr7_3:77379701-77379720 None:intergenic 35.0%
! AACTGACTTCCGTTAGTATT+AGG + chr7_3:77379702-77379721 None:intergenic 35.0%
!! TGATAAGAGTACCCAACTAT+TGG - chr7_3:77379906-77379925 Msa1125900:intron 35.0%
!!! CCCAACTATTGGTTTGTTTT+TGG - chr7_3:77379917-77379936 Msa1125900:intron 35.0%
GGCAAACACAATAGATAATC+AGG - chr7_3:77380159-77380178 Msa1125900:CDS 35.0%
TGAATGTGGATGATTATCTC+TGG - chr7_3:77380196-77380215 Msa1125900:intron 35.0%
GAATGTGGATGATTATCTCT+GGG - chr7_3:77380197-77380216 Msa1125900:intron 35.0%
CTGTAGGAATGCAAAAAACA+AGG - chr7_3:77380342-77380361 Msa1125900:intron 35.0%
ACTCAATTTCTGTTTCAACC+AGG - chr7_3:77380527-77380546 Msa1125900:intron 35.0%
CCAGGAAAACACACAATATT+CGG - chr7_3:77380545-77380564 Msa1125900:intron 35.0%
CAATATTCGGAAGAGTAAGT+CGG - chr7_3:77380558-77380577 Msa1125900:intron 35.0%
AATATTCGGAAGAGTAAGTC+GGG - chr7_3:77380559-77380578 Msa1125900:intron 35.0%
TCCAAACAGATAACAATGAC+AGG - chr7_3:77380612-77380631 Msa1125900:intron 35.0%
ACCTGTCATTGTTATCTGTT+TGG + chr7_3:77380616-77380635 None:intergenic 35.0%
!! ACTGTTTTAGGCAAGATTGT+TGG + chr7_3:77380685-77380704 None:intergenic 35.0%
GAATATTGTAACAGTGCATG+AGG + chr7_3:77380821-77380840 None:intergenic 35.0%
! AATTTTAGACCTCGACAGAT+AGG + chr7_3:77380875-77380894 None:intergenic 35.0%
!! AGTAGTTGATTTGGGTTAGA+AGG - chr7_3:77381033-77381052 Msa1125900:CDS 35.0%
!! GTAGTTGATTTGGGTTAGAA+GGG - chr7_3:77381034-77381053 Msa1125900:CDS 35.0%
!! TAGTTGATTTGGGTTAGAAG+GGG - chr7_3:77381035-77381054 Msa1125900:CDS 35.0%
!!! CTTATTTTGTGGCATCACTT+TGG + chr7_3:77381166-77381185 None:intergenic 35.0%
CAAAGCCCAAATCATACATT+TGG + chr7_3:77381197-77381216 None:intergenic 35.0%
! AATAAGGGTGGTAAAGTGTT+GGG + chr7_3:77381246-77381265 None:intergenic 35.0%
TAATAAGGGTGGTAAAGTGT+TGG + chr7_3:77381247-77381266 None:intergenic 35.0%
AAACTAGCGTATAATAAGGG+TGG + chr7_3:77381258-77381277 None:intergenic 35.0%
TAGTATCTTCACATCATGGA+CGG + chr7_3:77381464-77381483 None:intergenic 35.0%
TCCATGATGTGAAGATACTA+CGG - chr7_3:77381464-77381483 Msa1125900:intron 35.0%
TTACGACTGGAAAAATGTCA+TGG - chr7_3:77381564-77381583 Msa1125900:intron 35.0%
! TGTAACTTTTGGCACTAGAT+TGG - chr7_3:77381618-77381637 Msa1125900:intron 35.0%
AAGTACAGTTCCAAAACGAT+AGG + chr7_3:77381677-77381696 None:intergenic 35.0%
TAGTTCGAACATCGACATAT+TGG + chr7_3:77381870-77381889 None:intergenic 35.0%
!! GAAGTTTCTAGAGTAACCTC+CGG + chr7_3:77378882-77378901 None:intergenic 40.0%
! GGTTACTCTAGAAACTTCCA+TGG - chr7_3:77378884-77378903 Msa1125900:three_prime_UTR 40.0%
GGATTTCATAGTACAAGGTG+GGG - chr7_3:77379200-77379219 Msa1125900:three_prime_UTR 40.0%
CACTGCCATAAACAACAAAG+TGG + chr7_3:77379605-77379624 None:intergenic 40.0%
AATGCTGGCCCTAATACTAA+CGG - chr7_3:77379690-77379709 Msa1125900:intron 40.0%
GACAATGCACCATGCTTATT+GGG - chr7_3:77379939-77379958 Msa1125900:intron 40.0%
! ATGTAATCTGAGGTCACTGA+TGG - chr7_3:77380138-77380157 Msa1125900:CDS 40.0%
! CAGCTGTCTAATATCCGTTT+TGG + chr7_3:77380292-77380311 None:intergenic 40.0%
! CCGAATATTGTGTGTTTTCC+TGG + chr7_3:77380548-77380567 None:intergenic 40.0%
ATATTCGGAAGAGTAAGTCG+GGG - chr7_3:77380560-77380579 Msa1125900:intron 40.0%
! TCAGATGACCAACATTTTCG+AGG + chr7_3:77380782-77380801 None:intergenic 40.0%
TCGAAAATGTTGGTCATCTG+AGG - chr7_3:77380781-77380800 Msa1125900:intron 40.0%
AAACACGTTGGATCTAGGTT+TGG - chr7_3:77380955-77380974 Msa1125900:intron 40.0%
GTCGCCTTTACACAAAATCT+CGG + chr7_3:77381065-77381084 None:intergenic 40.0%
TTTGTGTAAAGGCGACAGAT+TGG - chr7_3:77381069-77381088 Msa1125900:CDS 40.0%
TGACCAACTGAGGTAAAGTT+AGG - chr7_3:77381108-77381127 Msa1125900:intron 40.0%
GACCAACTGAGGTAAAGTTA+GGG - chr7_3:77381109-77381128 Msa1125900:intron 40.0%
ACCAACTGAGGTAAAGTTAG+GGG - chr7_3:77381110-77381129 Msa1125900:intron 40.0%
GTAAAGTTAGGGGACCAAAA+TGG - chr7_3:77381120-77381139 Msa1125900:intron 40.0%
!! ATGTTATAAGGGTGTCTTCC+AGG - chr7_3:77381286-77381305 Msa1125900:intron 40.0%
AGTATCTTCACATCATGGAC+GGG + chr7_3:77381463-77381482 None:intergenic 40.0%
TCCGTAGTATCTTCACATCA+TGG + chr7_3:77381468-77381487 None:intergenic 40.0%
!! CATATTGGTTCATGCATCAG+AGG + chr7_3:77381855-77381874 None:intergenic 40.0%
GAGAGAGATAGAGAGAGTGA+AGG - chr7_3:77378799-77378818 Msa1125900:three_prime_UTR 45.0%
AGCATGCACCTAGAACTTGT+AGG - chr7_3:77379024-77379043 Msa1125900:three_prime_UTR 45.0%
AGAGGAGGAGAATCCATCTA+TGG - chr7_3:77379240-77379259 Msa1125900:exon 45.0%
GAGGAGGAGAATCCATCTAT+GGG - chr7_3:77379241-77379260 Msa1125900:CDS 45.0%
TGTTTATTCAAAGGGGGCCT+AGG - chr7_3:77379541-77379560 Msa1125900:intron 45.0%
!!! AAAGGGGGCCTAGGTTTTTT+TGG - chr7_3:77379550-77379569 Msa1125900:intron 45.0%
!!! AAGGGGGCCTAGGTTTTTTT+GGG - chr7_3:77379551-77379570 Msa1125900:intron 45.0%
AAACAAGAGCTGAAGCACAC+TGG - chr7_3:77379645-77379664 Msa1125900:intron 45.0%
! CACTGTGTTACTCACTTGCA+TGG - chr7_3:77379837-77379856 Msa1125900:intron 45.0%
TGTTACTCACTTGCATGGTG+AGG - chr7_3:77379842-77379861 Msa1125900:intron 45.0%
GGACAATGCACCATGCTTAT+TGG - chr7_3:77379938-77379957 Msa1125900:intron 45.0%
TTGGGTGTCCTCGAAAATGT+TGG - chr7_3:77380771-77380790 Msa1125900:intron 45.0%
TCCACGCTGAGTAGTTGATT+TGG - chr7_3:77381024-77381043 Msa1125900:CDS 45.0%
! CCACGCTGAGTAGTTGATTT+GGG - chr7_3:77381025-77381044 Msa1125900:CDS 45.0%
TGTAAAGGCGACAGATTGGA+CGG - chr7_3:77381073-77381092 Msa1125900:CDS 45.0%
TCCCCTAACTTTACCTCAGT+TGG + chr7_3:77381114-77381133 None:intergenic 45.0%
!! TAAGGGTGTCTTCCAGGAAA+TGG - chr7_3:77381292-77381311 Msa1125900:intron 45.0%
GATACTACGGACATCAGTCA+AGG - chr7_3:77381477-77381496 Msa1125900:intron 45.0%
ATCGCTGACATAGTTACGAC+TGG - chr7_3:77381551-77381570 Msa1125900:intron 45.0%
CTGTCATGCACGATTGACAT+AGG - chr7_3:77381736-77381755 Msa1125900:intron 45.0%
TGAAGTCTGCACCATTAGAG+CGG + chr7_3:77381810-77381829 None:intergenic 45.0%
TTGGTTCATGCATCAGAGGA+TGG + chr7_3:77381851-77381870 None:intergenic 45.0%
!!! TTTTAACATTTTTTTTTTTT+GGG - chr7_3:77378984-77379003 Msa1125900:three_prime_UTR 5.0%
AAAATGTGGGCAAGCGCAGA+AGG - chr7_3:77378849-77378868 Msa1125900:three_prime_UTR 50.0%
TTACCATCCAAAGAGGGGCA+CGG + chr7_3:77379741-77379760 None:intergenic 50.0%
CAACGAAAGCCTATCTGTCG+AGG - chr7_3:77380863-77380882 Msa1125900:intron 50.0%
CCCAAATCAACTACTCAGCG+TGG + chr7_3:77381028-77381047 None:intergenic 50.0%
AGGGCTAACTTGACCAACTG+AGG - chr7_3:77381098-77381117 Msa1125900:CDS 50.0%
CTCGACGGTGAATGAACCCA+TGG + chr7_3:77378904-77378923 None:intergenic 55.0%
CATGGGTTCATTCACCGTCG+AGG - chr7_3:77378902-77378921 Msa1125900:three_prime_UTR 55.0%
TACAAGGTGGGGATCCCACT+GGG - chr7_3:77379211-77379230 Msa1125900:three_prime_UTR 55.0%
CGGAAGAGTAAGTCGGGGAA+TGG - chr7_3:77380565-77380584 Msa1125900:intron 55.0%
AGGCGACAGATTGGACGGAA+AGG - chr7_3:77381078-77381097 Msa1125900:CDS 55.0%
GGCGACAGATTGGACGGAAA+GGG - chr7_3:77381079-77381098 Msa1125900:CDS 55.0%
ATGCACCACCACCGCTCTAA+TGG - chr7_3:77381796-77381815 Msa1125900:intron 55.0%
AGTCTGCACCATTAGAGCGG+TGG + chr7_3:77381807-77381826 None:intergenic 55.0%
ATGTGGGCAAGCGCAGAAGG+TGG - chr7_3:77378852-77378871 Msa1125900:three_prime_UTR 60.0%
AAGCGCAGAAGGTGGTGCTC+CGG - chr7_3:77378860-77378879 Msa1125900:three_prime_UTR 60.0%
GTACAAGGTGGGGATCCCAC+TGG - chr7_3:77379210-77379229 Msa1125900:three_prime_UTR 60.0%
GATCCCACTGGGACAGGAAG+AGG - chr7_3:77379222-77379241 Msa1125900:exon 60.0%
CCTCCTCTTCCTGTCCCAGT+GGG + chr7_3:77379228-77379247 None:intergenic 60.0%
TCCTCCTCTTCCTGTCCCAG+TGG + chr7_3:77379229-77379248 None:intergenic 60.0%
GAGCTGAAGCACACTGGAGC+TGG - chr7_3:77379651-77379670 Msa1125900:intron 60.0%
CTGCACCATTAGAGCGGTGG+TGG + chr7_3:77381804-77381823 None:intergenic 60.0%
CCCACTGGGACAGGAAGAGG+AGG - chr7_3:77379225-77379244 Msa1125900:exon 65.0%
TCTCGCACCGTGCCCCTCTT+TGG - chr7_3:77379731-77379750 Msa1125900:intron 65.0%
GCACCGTGCCCCTCTTTGGA+TGG - chr7_3:77379735-77379754 Msa1125900:intron 65.0%
CGCAGAAGGTGGTGCTCCGG+AGG - chr7_3:77378863-77378882 Msa1125900:three_prime_UTR 70.0%
GGTGGGGATCCCACTGGGAC+AGG - chr7_3:77379216-77379235 Msa1125900:three_prime_UTR 70.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 77378798 77381947 77378798 ID=Msa1125900;Name=Msa1125900
chr7_3 mRNA 77378798 77381947 77378798 ID=Msa1125900-mRNA-1;Parent=Msa1125900;Name=Msa1125900-mRNA-1;_AED=0.06;_eAED=0.06;_QI=54|1|1|1|0.8|1|6|443|164
chr7_3 exon 77378798 77379286 77378798 ID=Msa1125900-mRNA-1:exon:21340;Parent=Msa1125900-mRNA-1
chr7_3 exon 77380112 77380196 77380112 ID=Msa1125900-mRNA-1:exon:21339;Parent=Msa1125900-mRNA-1
chr7_3 exon 77380989 77381122 77380989 ID=Msa1125900-mRNA-1:exon:21338;Parent=Msa1125900-mRNA-1
chr7_3 exon 77381483 77381544 77381483 ID=Msa1125900-mRNA-1:exon:21337;Parent=Msa1125900-mRNA-1
chr7_3 exon 77381636 77381731 77381636 ID=Msa1125900-mRNA-1:exon:21336;Parent=Msa1125900-mRNA-1
chr7_3 exon 77381822 77381947 77381822 ID=Msa1125900-mRNA-1:exon:21335;Parent=Msa1125900-mRNA-1
chr7_3 five_prime_UTR 77381894 77381947 77381894 ID=Msa1125900-mRNA-1:five_prime_utr;Parent=Msa1125900-mRNA-1
chr7_3 CDS 77381822 77381893 77381822 ID=Msa1125900-mRNA-1:cds;Parent=Msa1125900-mRNA-1
chr7_3 CDS 77381636 77381731 77381636 ID=Msa1125900-mRNA-1:cds;Parent=Msa1125900-mRNA-1
chr7_3 CDS 77381483 77381544 77381483 ID=Msa1125900-mRNA-1:cds;Parent=Msa1125900-mRNA-1
chr7_3 CDS 77380989 77381122 77380989 ID=Msa1125900-mRNA-1:cds;Parent=Msa1125900-mRNA-1
chr7_3 CDS 77380112 77380196 77380112 ID=Msa1125900-mRNA-1:cds;Parent=Msa1125900-mRNA-1
chr7_3 CDS 77379241 77379286 77379241 ID=Msa1125900-mRNA-1:cds;Parent=Msa1125900-mRNA-1
chr7_3 three_prime_UTR 77378798 77379240 77378798 ID=Msa1125900-mRNA-1:three_prime_utr;Parent=Msa1125900-mRNA-1
Gene Sequence

>Msa1125900

ATGTGGGCAAGCGCAGAAGGTGGTGCTCCGGAGGTTACTCTAGAAACTTCCATGGGTTCATTCACCGTCGAGTTGTACTACAAGCATGCACCTAGAACTTGTAGGAACTTCATTGAACTATCTCGTAGAGGTTATTACGACAACGTTAAGTTCCACAGAATCATCAAGGATTTCATAGTACAAGGTGGGGATCCCACTGGGACAGGAAGAGGAGGAGAATCCATCTATGGTGCTAAATTTGAAGATGAGATTAAACAAGAGCTGAAGCACACTGGAGCTGGTATTTTATCAATGGCTAATGCTGGCCCTAATACTAACGGAAGTCAGTTCTTTATTACTCTCGCACCGTGCCCCTCTTTGGATGGAAAACACACAATATTCGGAAGAGTAAGTCGGGGAATGGAAATCATCAAAAGACTTGGCAGTGTCCAAACAGATAACAATGACAGGCCCGTCCATGATGTGAAGATACTACGGACATCAGTCAAGGATTGA
Protein sequence

>Msa1125900

MWASAEGGAPEVTLETSMGSFTVELYYKHAPRTCRNFIELSRRGYYDNVKFHRIIKDFIVQGGDPTGTGRGGESIYGAKFEDEIKQELKHTGAGILSMANAGPNTNGSQFFITLAPCPSLDGKHTIFGRVSRGMEIIKRLGSVQTDNNDRPVHDVKILRTSVKD*