AlfalfaGEDB | Msa1125900

M. sativa cultivar zhongmu-4 / Msa1125900

KEGG: K12733
GO: GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:0140096 GO:1901564
PFAM: PF00160.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1125900	XP_004494215.1	98.780	164	2	0	1	164	1	164	2.82e-118	341

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1125900	sp\|Q9SIH1\|CP18B_ARATH	86.585	164	22	0	1	164	1	164	3.01e-105	301

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1125900	A0A1S2XVA2	98.780	164	2	0	1	164	1	164	1.35e-118	341

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0128330	Msa1125900	0.854188	1.453948e-61	-8.615850e-47
Msa0146610	Msa1125900	0.805929	1.052815e-49	-8.615850e-47
Msa0167860	Msa1125900	0.811506	6.767152e-51	-8.615850e-47
Msa0174580	Msa1125900	0.862801	3.917531e-64	-8.615850e-47
Msa0225350	Msa1125900	0.808154	3.559533e-50	-8.615850e-47
Msa0315430	Msa1125900	0.834423	3.023373e-56	-8.615850e-47
Msa0481800	Msa1125900	0.986480	6.287349e-167	-8.615850e-47
Msa0574780	Msa1125900	0.809221	2.105966e-50	-8.615850e-47
Msa0579830	Msa1125900	0.824356	8.437460e-54	-8.615850e-47
Msa0649890	Msa1125900	0.831001	2.137602e-55	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1125900	MtrunA17_Chr7g0266721	98.780	164	2	0	1	164	1	164	1.55e-121	339
Msa1125900	MtrunA17_Chr8g0351571	50.331	151	75	0	12	162	3	153	2.26e-53	166
Msa1125900	MtrunA17_Chr2g0321111	52.597	154	72	1	10	162	461	614	1.75e-52	176
Msa1125900	MtrunA17_Chr5g0401141	52.055	146	70	0	12	157	347	492	1.46e-49	167
Msa1125900	MtrunA17_Chr2g0288371	53.247	154	70	2	11	162	14	167	5.05e-43	149
Msa1125900	MtrunA17_Chr1g0193711	50.336	149	68	5	17	160	97	244	4.46e-40	135
Msa1125900	MtrunA17_Chr1g0213971	49.306	144	68	4	18	157	93	235	1.02e-39	134
Msa1125900	MtrunA17_Chr7g0270991	50.000	146	68	4	17	158	108	252	2.18e-39	134
Msa1125900	MtrunA17_Chr4g0045321	48.684	152	65	4	19	158	18	168	4.13e-38	133
Msa1125900	MtrunA17_Chr6g0484281	42.138	159	84	2	12	162	3	161	5.09e-37	134

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1125900	AT2G36130.1	86.585	164	22	0	1	164	1	164	3.06e-106	301
Msa1125900	AT1G01940.1	50.331	151	75	0	12	162	3	153	3.80e-53	166
Msa1125900	AT3G44600.1	52.500	160	75	1	4	162	469	628	7.84e-53	177
Msa1125900	AT5G67530.1	49.669	151	76	0	12	162	346	496	1.99e-49	167
Msa1125900	AT4G33060.1	50.968	155	73	3	11	162	14	168	4.50e-44	152
Msa1125900	AT3G62030.3	51.748	143	64	3	19	157	108	249	1.97e-38	132
Msa1125900	AT3G62030.1	51.748	143	64	3	19	157	109	250	2.06e-38	132
Msa1125900	AT1G53720.2	40.994	161	87	3	12	164	3	163	6.50e-38	133
Msa1125900	AT3G62030.2	51.748	143	64	3	19	157	162	303	8.02e-38	132
Msa1125900	AT5G13120.2	48.252	143	69	4	19	157	103	244	1.32e-37	129

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Find 70 sgRNAs with CRISPR-Local

Find 211 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACGATAGGTCATAAACA+TGG	0.677534	7_3:+77379061	None:intergenic
AAAATGTGGGCAAGCGCAGA+AGG	0.539071	7_3:-77381874	Msa1125900:CDS
AAACAAGAGCTGAAGCACAC+TGG	0.591406	7_3:-77381078	Msa1125900:CDS
AACTGACTTCCGTTAGTATT+AGG	0.209355	7_3:+77381024	None:intergenic
AAGCGCAGAAGGTGGTGCTC+CGG	0.493778	7_3:-77381863	Msa1125900:CDS
AAGTACAGTTCCAAAACGAT+AGG	0.613096	7_3:+77379049	None:intergenic
AATAATAATAATTACCTCGA+CGG	0.570411	7_3:+77381807	None:intergenic
AATATTCGGAAGAGTAAGTC+GGG	0.456454	7_3:-77380164	Msa1125900:CDS
AATGCTGGCCCTAATACTAA+CGG	0.646655	7_3:-77381033	Msa1125900:CDS
ACATAAATTTATTTGGAACT+TGG	0.432020	7_3:+77379026	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTAAACCCTGATACAGAATT+AGG	-	chr7_3:77378960-77378979	Msa1125900:three_prime_UTR	30.0%
TAAACCCTGATACAGAATTA+GGG	-	chr7_3:77378961-77378980	Msa1125900:three_prime_UTR	30.0%
AAAACCCTAATTCTGTATCA+GGG	+	chr7_3:77378968-77378987	None:intergenic	30.0%
TAAAACCCTAATTCTGTATC+AGG	+	chr7_3:77378969-77378988	None:intergenic	30.0%
ATCAACTGACATAAACTGTT+TGG	-	chr7_3:77379352-77379371	Msa1125900:intron	30.0%
TCAACTGACATAAACTGTTT+GGG	-	chr7_3:77379353-77379372	Msa1125900:intron	30.0%
TGAAGTTGTTTATTCAAAGG+GGG	-	chr7_3:77379535-77379554	Msa1125900:intron	30.0%
ATAAATTACCATCCAAAGAG+GGG	+	chr7_3:77379746-77379765	None:intergenic	30.0%
GATAAATTACCATCCAAAGA+GGG	+	chr7_3:77379747-77379766	None:intergenic	30.0%
AGATAAATTACCATCCAAAG+AGG	+	chr7_3:77379748-77379767	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_3	gene	77378798	77381947	77378798	ID=Msa1125900;Name=Msa1125900
chr7_3	mRNA	77378798	77381947	77378798	ID=Msa1125900-mRNA-1;Parent=Msa1125900;Name=Msa1125900-mRNA-1;_AED=0.06;_eAED=0.06;_QI=54\|1\|1\|1\|0.8\|1\|6\|443\|164
chr7_3	exon	77378798	77379286	77378798	ID=Msa1125900-mRNA-1:exon:21340;Parent=Msa1125900-mRNA-1
chr7_3	exon	77380112	77380196	77380112	ID=Msa1125900-mRNA-1:exon:21339;Parent=Msa1125900-mRNA-1
chr7_3	exon	77380989	77381122	77380989	ID=Msa1125900-mRNA-1:exon:21338;Parent=Msa1125900-mRNA-1
chr7_3	exon	77381483	77381544	77381483	ID=Msa1125900-mRNA-1:exon:21337;Parent=Msa1125900-mRNA-1
chr7_3	exon	77381636	77381731	77381636	ID=Msa1125900-mRNA-1:exon:21336;Parent=Msa1125900-mRNA-1
chr7_3	exon	77381822	77381947	77381822	ID=Msa1125900-mRNA-1:exon:21335;Parent=Msa1125900-mRNA-1
chr7_3	five_prime_UTR	77381894	77381947	77381894	ID=Msa1125900-mRNA-1:five_prime_utr;Parent=Msa1125900-mRNA-1
chr7_3	CDS	77381822	77381893	77381822	ID=Msa1125900-mRNA-1:cds;Parent=Msa1125900-mRNA-1
chr7_3	CDS	77381636	77381731	77381636	ID=Msa1125900-mRNA-1:cds;Parent=Msa1125900-mRNA-1
chr7_3	CDS	77381483	77381544	77381483	ID=Msa1125900-mRNA-1:cds;Parent=Msa1125900-mRNA-1
chr7_3	CDS	77380989	77381122	77380989	ID=Msa1125900-mRNA-1:cds;Parent=Msa1125900-mRNA-1
chr7_3	CDS	77380112	77380196	77380112	ID=Msa1125900-mRNA-1:cds;Parent=Msa1125900-mRNA-1
chr7_3	CDS	77379241	77379286	77379241	ID=Msa1125900-mRNA-1:cds;Parent=Msa1125900-mRNA-1
chr7_3	three_prime_UTR	77378798	77379240	77378798	ID=Msa1125900-mRNA-1:three_prime_utr;Parent=Msa1125900-mRNA-1

Gene Sequence

>Msa1125900

ATGTGGGCAAGCGCAGAAGGTGGTGCTCCGGAGGTTACTCTAGAAACTTCCATGGGTTCATTCACCGTCGAGTTGTACTACAAGCATGCACCTAGAACTTGTAGGAACTTCATTGAACTATCTCGTAGAGGTTATTACGACAACGTTAAGTTCCACAGAATCATCAAGGATTTCATAGTACAAGGTGGGGATCCCACTGGGACAGGAAGAGGAGGAGAATCCATCTATGGTGCTAAATTTGAAGATGAGATTAAACAAGAGCTGAAGCACACTGGAGCTGGTATTTTATCAATGGCTAATGCTGGCCCTAATACTAACGGAAGTCAGTTCTTTATTACTCTCGCACCGTGCCCCTCTTTGGATGGAAAACACACAATATTCGGAAGAGTAAGTCGGGGAATGGAAATCATCAAAAGACTTGGCAGTGTCCAAACAGATAACAATGACAGGCCCGTCCATGATGTGAAGATACTACGGACATCAGTCAAGGATTGA

Protein sequence

>Msa1125900

MWASAEGGAPEVTLETSMGSFTVELYYKHAPRTCRNFIELSRRGYYDNVKFHRIIKDFIVQGGDPTGTGRGGESIYGAKFEDEIKQELKHTGAGILSMANAGPNTNGSQFFITLAPCPSLDGKHTIFGRVSRGMEIIKRLGSVQTDNNDRPVHDVKILRTSVKD*