AlfalfaGEDB | Msa0470180

M. sativa cultivar zhongmu-4 / Msa0470180

KEGG: K03798
GO: GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004176 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006508 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009507 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009790 GO:0009791 GO:0009793 GO:0009941 GO:0010154 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0022414 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032501 GO:0032502 GO:0034357 GO:0042623 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0055035 GO:0061458 GO:0070011 GO:0071704 GO:0140096 GO:1901564
PFAM: PF00004.32

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0470180	XP_003602591.2	96.682	844	17	2	1	839	1	838	0.0	1672

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0470180	sp\|F4KF14\|FTSI4_ARATH	74.359	858	198	7	1	839	1	855	0.0	1278

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0470180	G7JBI2	96.682	844	17	2	1	839	1	838	0.0	1672

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000780	Msa0470180	0.829922	3.925637e-55	-8.615850e-47
Msa0001950	Msa0470180	0.882282	1.186851e-70	-8.615850e-47
Msa0013050	Msa0470180	-0.838079	3.557877e-57	-8.615850e-47
Msa0014920	Msa0470180	0.811269	7.617461e-51	-8.615850e-47
Msa0017940	Msa0470180	0.847966	8.275708e-60	-8.615850e-47
Msa0020630	Msa0470180	0.820772	5.749774e-53	-8.615850e-47
Msa0024680	Msa0470180	0.858761	6.600264e-63	-8.615850e-47
Msa0027540	Msa0470180	0.883272	5.161716e-71	-8.615850e-47
Msa0028060	Msa0470180	0.808775	2.623572e-50	-8.615850e-47
Msa0029620	Msa0470180	0.827742	1.322643e-54	-8.615850e-47

Showing 1 to 10 of 680 entries

Previous1 2 3 4 5…68Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0470180	MtrunA17_Chr3g0129971	96.682	844	17	2	1	839	1	838	0.0	1672
Msa0470180	MtrunA17_Chr3g0143721	38.737	475	260	9	281	736	234	696	2.87e-90	300
Msa0470180	MtrunA17_Chr7g0217421	45.119	379	195	7	286	663	29	395	4.40e-85	277
Msa0470180	MtrunA17_Chr2g0297281	40.821	463	248	10	283	731	273	723	1.31e-84	286
Msa0470180	MtrunA17_Chr4g0052411	39.872	469	249	8	281	731	214	667	1.42e-84	284
Msa0470180	MtrunA17_Chr4g0031821	34.647	482	284	10	280	746	303	768	2.59e-72	253
Msa0470180	MtrunA17_Chr6g0456351	48.507	268	131	3	297	564	317	577	2.74e-70	243
Msa0470180	MtrunA17_Chr3g0104211	47.475	297	148	4	297	591	304	594	1.16e-69	246
Msa0470180	MtrunA17_Chr5g0429571	47.423	291	147	3	290	580	306	590	5.10e-68	241
Msa0470180	MtrunA17_Chr7g0248361	43.810	315	170	5	280	594	175	482	3.61e-67	235

Showing 1 to 10 of 85 entries

Previous1 2 3 4 5…9Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0470180	AT5G64580.1	74.359	858	198	7	1	839	1	855	0.0	1278
Msa0470180	AT1G50250.1	39.286	476	256	12	281	736	244	706	2.48e-88	295
Msa0470180	AT5G42270.1	39.368	475	257	10	281	736	232	694	5.05e-88	294
Msa0470180	AT5G15250.1	34.181	629	338	14	127	735	91	663	2.13e-87	292
Msa0470180	AT2G30950.1	40.851	470	250	7	281	735	209	665	5.03e-86	288
Msa0470180	AT2G30950.2	40.851	470	250	7	281	735	209	665	5.03e-86	288
Msa0470180	AT2G30950.3	40.851	470	250	7	281	735	209	665	5.03e-86	288
Msa0470180	AT2G30950.4	40.851	470	250	7	281	735	213	669	6.02e-86	288
Msa0470180	AT1G06430.1	40.466	472	249	8	281	735	202	658	3.17e-85	286
Msa0470180	AT1G06430.3	40.466	472	249	8	281	735	202	658	3.17e-85	286

Showing 1 to 10 of 106 entries

Previous1 2 3 4 5…11Next

Find 192 sgRNAs with CRISPR-Local

Find 642 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAAGAATGAGGGAATT+GGG	0.400615	3_3:-72236946	None:intergenic
AAAATGTTACCTCAACAATA+GGG	0.442321	3_3:-72243019	None:intergenic
AAACATATCCCTCAAAATAT+GGG	0.446701	3_3:-72246311	None:intergenic
AAAGCATATTACAGAAACAA+TGG	0.618382	3_3:+72244661	Msa0470180:CDS
AAAGCCATCGCAGGTGAAGC+AGG	0.434877	3_3:+72240955	Msa0470180:CDS
AAAGGAATTTATTGTCCAAA+AGG	0.427971	3_3:+72240886	Msa0470180:CDS
AAAGGGGAAAATCAAAGCTG+AGG	0.665237	3_3:+72245119	Msa0470180:CDS
AAAGTTGATACCTTGTGATT+TGG	0.332598	3_3:+72238444	Msa0470180:CDS
AAATCAAAGCTGAGGAGATT+TGG	0.292088	3_3:+72245127	Msa0470180:CDS
AAATTGTTAATGATGAAACA+TGG	0.674895	3_3:+72245658	Msa0470180:CDS

Showing 1 to 10 of 192 entries

Previous1 2 3 4 5…20Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAAAGAAGAATGAGGGAATT+GGG	-	chr3_3:72236949-72236968	None:intergenic	30.0%
AAAAAGAAGAATGAGGGAAT+TGG	-	chr3_3:72236950-72236969	None:intergenic	30.0%
GTTGAGAAAAAGAAGAATGA+GGG	-	chr3_3:72236956-72236975	None:intergenic	30.0%
GAAATTGAAAGGAACTGAAT+GGG	+	chr3_3:72237306-72237325	Msa0470180:CDS	30.0%
TCTATTGAGTACTCTGATTA+TGG	+	chr3_3:72237397-72237416	Msa0470180:CDS	30.0%
AGTTACTTCATACGATTTCA+TGG	+	chr3_3:72237485-72237504	Msa0470180:intron	30.0%
CTTATAACGAAAACAGCTTA+TGG	-	chr3_3:72237606-72237625	None:intergenic	30.0%
ATTATTTCCATAAGTTCTCC+AGG	+	chr3_3:72237794-72237813	Msa0470180:intron	30.0%
AGAACAGCTTATATCTTATG+TGG	+	chr3_3:72237827-72237846	Msa0470180:intron	30.0%
TGATAAGTGCTTAATTAAGC+AGG	+	chr3_3:72237899-72237918	Msa0470180:intron	30.0%

Showing 1 to 10 of 642 entries

Previous1 2 3 4 5…65Next

Chromosome	Type	Strat	End	Strand	Name
chr3_3	gene	72236772	72246518	72236772	ID=Msa0470180;Name=Msa0470180
chr3_3	mRNA	72236772	72246518	72236772	ID=Msa0470180-mRNA-1;Parent=Msa0470180;Name=Msa0470180-mRNA-1;_AED=0.08;_eAED=0.08;_QI=95\|1\|1\|1\|0.93\|0.88\|17\|619\|839
chr3_3	exon	72236772	72237103	72236772	ID=Msa0470180-mRNA-1:exon:17906;Parent=Msa0470180-mRNA-1
chr3_3	exon	72237199	72237433	72237199	ID=Msa0470180-mRNA-1:exon:17907;Parent=Msa0470180-mRNA-1
chr3_3	exon	72238161	72238542	72238161	ID=Msa0470180-mRNA-1:exon:17908;Parent=Msa0470180-mRNA-1
chr3_3	exon	72240759	72241017	72240759	ID=Msa0470180-mRNA-1:exon:17909;Parent=Msa0470180-mRNA-1
chr3_3	exon	72241690	72241821	72241690	ID=Msa0470180-mRNA-1:exon:17910;Parent=Msa0470180-mRNA-1
chr3_3	exon	72242177	72242251	72242177	ID=Msa0470180-mRNA-1:exon:17911;Parent=Msa0470180-mRNA-1
chr3_3	exon	72242316	72242441	72242316	ID=Msa0470180-mRNA-1:exon:17912;Parent=Msa0470180-mRNA-1
chr3_3	exon	72242534	72242643	72242534	ID=Msa0470180-mRNA-1:exon:17913;Parent=Msa0470180-mRNA-1
chr3_3	exon	72242721	72242799	72242721	ID=Msa0470180-mRNA-1:exon:17914;Parent=Msa0470180-mRNA-1
chr3_3	exon	72242894	72243031	72242894	ID=Msa0470180-mRNA-1:exon:17915;Parent=Msa0470180-mRNA-1
chr3_3	exon	72243124	72243235	72243124	ID=Msa0470180-mRNA-1:exon:17916;Parent=Msa0470180-mRNA-1
chr3_3	exon	72244536	72244699	72244536	ID=Msa0470180-mRNA-1:exon:17917;Parent=Msa0470180-mRNA-1
chr3_3	exon	72244818	72244923	72244818	ID=Msa0470180-mRNA-1:exon:17918;Parent=Msa0470180-mRNA-1
chr3_3	exon	72245106	72245182	72245106	ID=Msa0470180-mRNA-1:exon:17919;Parent=Msa0470180-mRNA-1
chr3_3	exon	72245402	72245545	72245402	ID=Msa0470180-mRNA-1:exon:17920;Parent=Msa0470180-mRNA-1
chr3_3	exon	72245654	72245821	72245654	ID=Msa0470180-mRNA-1:exon:17921;Parent=Msa0470180-mRNA-1
chr3_3	exon	72245924	72246518	72245924	ID=Msa0470180-mRNA-1:exon:17922;Parent=Msa0470180-mRNA-1
chr3_3	five_prime_UTR	72236772	72236866	72236772	ID=Msa0470180-mRNA-1:five_prime_utr;Parent=Msa0470180-mRNA-1
chr3_3	CDS	72236867	72237103	72236867	ID=Msa0470180-mRNA-1:cds;Parent=Msa0470180-mRNA-1
chr3_3	CDS	72237199	72237433	72237199	ID=Msa0470180-mRNA-1:cds;Parent=Msa0470180-mRNA-1
chr3_3	CDS	72238161	72238542	72238161	ID=Msa0470180-mRNA-1:cds;Parent=Msa0470180-mRNA-1
chr3_3	CDS	72240759	72241017	72240759	ID=Msa0470180-mRNA-1:cds;Parent=Msa0470180-mRNA-1
chr3_3	CDS	72241690	72241821	72241690	ID=Msa0470180-mRNA-1:cds;Parent=Msa0470180-mRNA-1
chr3_3	CDS	72242177	72242251	72242177	ID=Msa0470180-mRNA-1:cds;Parent=Msa0470180-mRNA-1
chr3_3	CDS	72242316	72242441	72242316	ID=Msa0470180-mRNA-1:cds;Parent=Msa0470180-mRNA-1
chr3_3	CDS	72242534	72242643	72242534	ID=Msa0470180-mRNA-1:cds;Parent=Msa0470180-mRNA-1
chr3_3	CDS	72242721	72242799	72242721	ID=Msa0470180-mRNA-1:cds;Parent=Msa0470180-mRNA-1
chr3_3	CDS	72242894	72243031	72242894	ID=Msa0470180-mRNA-1:cds;Parent=Msa0470180-mRNA-1
chr3_3	CDS	72243124	72243235	72243124	ID=Msa0470180-mRNA-1:cds;Parent=Msa0470180-mRNA-1
chr3_3	CDS	72244536	72244699	72244536	ID=Msa0470180-mRNA-1:cds;Parent=Msa0470180-mRNA-1
chr3_3	CDS	72244818	72244923	72244818	ID=Msa0470180-mRNA-1:cds;Parent=Msa0470180-mRNA-1
chr3_3	CDS	72245106	72245182	72245106	ID=Msa0470180-mRNA-1:cds;Parent=Msa0470180-mRNA-1
chr3_3	CDS	72245402	72245545	72245402	ID=Msa0470180-mRNA-1:cds;Parent=Msa0470180-mRNA-1
chr3_3	CDS	72245654	72245797	72245654	ID=Msa0470180-mRNA-1:cds;Parent=Msa0470180-mRNA-1
chr3_3	three_prime_UTR	72245798	72245821	72245798	ID=Msa0470180-mRNA-1:three_prime_utr;Parent=Msa0470180-mRNA-1
chr3_3	three_prime_UTR	72245924	72246518	72245924	ID=Msa0470180-mRNA-1:three_prime_utr;Parent=Msa0470180-mRNA-1

Gene Sequence

>Msa0470180

ATGAATCCTCAAATTTCAAACAGTATCGAATTACTTCAATTCCCAAAACCCTTATTCCCTCGTAAAACCTTCTTCTTCACCCAATTCCCTCATTCTTCTTTTTCTCAACGCCTTCTTAGAACAAACACTCGCAACTGCAAACTCAGAATCACCGCTTCCAATGTTTCAAATTCTCTTTCAGTTTCAAATACATCTTCCTCCAACGATGAAGACGCTCAATCTCTTCAGCTTTTCGAGAATCGGGTGAATGAGATGGAAGAACTTGAGAGGAAGGCTAATGTGCAGTTAGATAGGCAACTTGTATTGGCTTCTTCATGGAATAGAGCTTTGTTGACTTTTCGTGGGAAATTGAAAGGAACTGAATGGGATCCTGAAAATTCACATAGGATTGATTTCAGTGATTTTTTGAAATTGCTCGACTCCAATACTGTCAAGTCTATTGAGTACTCTGATTATGGACAAACCTTATCAGTTATTTTACCATATTACAAGAACGGAAAAACATCAGGCACTGAAGAGAATCCCAAGGATATTGTTTTTCGACGTCATGCGGTTGATCGAATGCCGATTGATTGTTGGAATGATGTTTGGGGGAAGCTGCATCAACAAAATGTAAATGTTGATGTCATTAATGTAGATGCTGTACCTGCTGAAGTATACTCGACGGTTGCAACTGCAGTTGTATGGTCTATGCGTCTTGCCCTGGCTGTTGGATTTTTTGTGTGGATTGATAATTTGATGAGACCAATATATGCAAAGTTGATACCTTGTGATTTGGGAACTCCTCCACCTACCCCACAAACTAAGGTGCCAGCCTTAAGAAGACACGCACTTGGTTCTCTAGGCAAAAGTCGGGCTAAATTTATATCTGCAGAAGAAAGAACTGGCGTTACATTTGATGATTTTGCTGGCCAGGAATATATAAAGAGGGAACTACAAGAGATTGTCCGAATTTTAAAGAATGAGGAGGAGTTTCAAGACAAAGGAATTTATTGTCCAAAAGGTGTTCTTCTTCACGGACCTCCTGGAACCGGTAAAACTTTACTGGCTAAAGCCATCGCAGGTGAAGCAGGGTTGCCTTTTTTTGCTGCTAGTGGCACGGATTTTGTAGAGATGTTTGTAGGGGTTGCTGCATCCCGTGTTAAAGATCTTTTTGCCAATGCAAGATCATTTGCGCCTTCTATAATCTTTGTTGATGAGATTGATGCTATTGGTAGCAAGCGTGGAGGACCTGATATTGGTGGAGGAGGTGCTGAAAGGGAACAAGGATTACTTCAGATACTGACTGAGATGGACGGATTCAAAGTTTCCACAGCACAGGTGCTCGTGATAGGTGCTACAAATAGATTGGATATTCTTGATCCTGCTCTTTTGAGGAAGGGTCGTTTCGACAAGATCATTAGAGTCGGTTTACCTTTACAAGATGGAAGACTTGCCATTTTGAAGGTGCATGCCATGAATAAGTCTTTTCGCTCAGAAGAAGAAAAGGATACTCTACTGACGGAAATTGCAGAGCTAACAGAAGATTTTACTGGGGCAGAGCTGCAAAATATACTGAATGAAGCTGGAATTTTAACGGCCAGGAAGGATCTGGATTACATCGGACGTGATGAGTTGCTTGAGGCATTAAAAAGGCAAAAAGGAACATTTGAAACAGGGCAAGAGGATACTGCAGAAATTCCTGAAGATCTGAGACTGAGATTAGCATATAGAGAAGCAGCCGTGGCTGTTCTTGCCTGTTATTTTCCTGAACCGCACCGCCCTATTGTTGAGACTGATATAAGTTCTATTCAAAGCCAGCCAAATATGTGTTATAATGAAAGTTCTGGGAAGGTTTTTGCTAGGAAATCAGATTACATAAACTCTATAGTGCGTTCTTGTGCTCCAAGAGTAATTGAGGAGGAGATGTTCGGGATCGACAACTTGTGTTGGATGTCTGCAAATGCAACATCAGAAGCTTCAAGGCTTGCAGAATTTTTGATTCTGCGGACTGGAATGACTGCATTTGGGAAAGCATATTACAGAAACAATGGCGATCTTGTGCCTAATCTTGCAGTGAAGCTTGAAGCACTCCGAGATGAGTATCTGCGTTATGGTACAGAGAAGTGTTCATCTGTGCTAAAAGAATATCATTCAGCGGTCGAGACAATCACAGATATTTTGCTTGAAAAGGGGAAAATCAAAGCTGAGGAGATTTGGGACATTTATAAAAGTGCTCCTCGTGTAGCTCAGCCTTCTGTGAGTCCACTTGATGAATATGGAGCACTGATTTATGCTGGACGGTGGGGAATCCACGGGATTAGTCTTCCTGGAAGGGTTACATTTGCACCGGGCAATGTTGGGTTTTCAACCTTTGGTGCAGCACGCCCTACAGAGACGCAAATTGTTAATGATGAAACATGGAAACTAGTAGATGATGTCTGGGATAAAAAGGTTCAAGATATTAGAGATGAAGTTTTGAGGGAGATTGAAGAAGAGAAAGAAAAGCCACAACTTTTGATGGCAAGTCATTTTCTCTGA

Protein sequence

>Msa0470180

MNPQISNSIELLQFPKPLFPRKTFFFTQFPHSSFSQRLLRTNTRNCKLRITASNVSNSLSVSNTSSSNDEDAQSLQLFENRVNEMEELERKANVQLDRQLVLASSWNRALLTFRGKLKGTEWDPENSHRIDFSDFLKLLDSNTVKSIEYSDYGQTLSVILPYYKNGKTSGTEENPKDIVFRRHAVDRMPIDCWNDVWGKLHQQNVNVDVINVDAVPAEVYSTVATAVVWSMRLALAVGFFVWIDNLMRPIYAKLIPCDLGTPPPTPQTKVPALRRHALGSLGKSRAKFISAEERTGVTFDDFAGQEYIKRELQEIVRILKNEEEFQDKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGLPFFAASGTDFVEMFVGVAASRVKDLFANARSFAPSIIFVDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTAQVLVIGATNRLDILDPALLRKGRFDKIIRVGLPLQDGRLAILKVHAMNKSFRSEEEKDTLLTEIAELTEDFTGAELQNILNEAGILTARKDLDYIGRDELLEALKRQKGTFETGQEDTAEIPEDLRLRLAYREAAVAVLACYFPEPHRPIVETDISSIQSQPNMCYNESSGKVFARKSDYINSIVRSCAPRVIEEEMFGIDNLCWMSANATSEASRLAEFLILRTGMTAFGKAYYRNNGDLVPNLAVKLEALRDEYLRYGTEKCSSVLKEYHSAVETITDILLEKGKIKAEEIWDIYKSAPRVAQPSVSPLDEYGALIYAGRWGIHGISLPGRVTFAPGNVGFSTFGAARPTETQIVNDETWKLVDDVWDKKVQDIRDEVLREIEEEKEKPQLLMASHFL*