Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0349060 | XP_024636066.2 | 93.923 | 181 | 10 | 1 | 1 | 180 | 1 | 181 | 3.33e-116 | 337 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0349060 | sp|Q9M7X9|CITRX_ARATH | 70.745 | 188 | 42 | 5 | 1 | 180 | 1 | 183 | 7.78e-85 | 250 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0349060 | A0A396JQ67 | 93.923 | 181 | 10 | 1 | 1 | 180 | 1 | 181 | 1.59e-116 | 337 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001950 | Msa0349060 | 0.828873 | 7.058599e-55 | -8.615850e-47 |
| Msa0024680 | Msa0349060 | 0.802869 | 4.571417e-49 | -8.615850e-47 |
| Msa0027540 | Msa0349060 | 0.830279 | 3.210905e-55 | -8.615850e-47 |
| Msa0030380 | Msa0349060 | 0.825942 | 3.559439e-54 | -8.615850e-47 |
| Msa0030430 | Msa0349060 | 0.804037 | 2.618039e-49 | -8.615850e-47 |
| Msa0032120 | Msa0349060 | 0.835918 | 1.268392e-56 | -8.615850e-47 |
| Msa0032400 | Msa0349060 | 0.830151 | 3.451300e-55 | -8.615850e-47 |
| Msa0044710 | Msa0349060 | 0.808998 | 2.350977e-50 | -8.615850e-47 |
| Msa0048020 | Msa0349060 | 0.820959 | 5.206758e-53 | -8.615850e-47 |
| Msa0050580 | Msa0349060 | 0.810960 | 8.886866e-51 | -8.615850e-47 |
| Msa0056520 | Msa0349060 | 0.839913 | 1.191935e-57 | -8.615850e-47 |
| Msa0056690 | Msa0349060 | 0.844429 | 7.601525e-59 | -8.615850e-47 |
| Msa0072810 | Msa0349060 | 0.815507 | 8.925084e-52 | -8.615850e-47 |
| Msa0075310 | Msa0349060 | 0.819541 | 1.100221e-52 | -8.615850e-47 |
| Msa0095380 | Msa0349060 | 0.802797 | 4.729882e-49 | -8.615850e-47 |
| Msa0103000 | Msa0349060 | 0.813066 | 3.088430e-51 | -8.615850e-47 |
| Msa0120330 | Msa0349060 | 0.811846 | 5.706424e-51 | -8.615850e-47 |
| Msa0141430 | Msa0349060 | 0.819531 | 1.106086e-52 | -8.615850e-47 |
| Msa0141830 | Msa0349060 | 0.809989 | 1.440223e-50 | -8.615850e-47 |
| Msa0168100 | Msa0349060 | 0.837128 | 6.239237e-57 | -8.615850e-47 |
| Msa0172350 | Msa0349060 | 0.803813 | 2.914191e-49 | -8.615850e-47 |
| Msa0173740 | Msa0349060 | 0.838776 | 2.352346e-57 | -8.615850e-47 |
| Msa0173820 | Msa0349060 | 0.839405 | 1.616141e-57 | -8.615850e-47 |
| Msa0173830 | Msa0349060 | 0.835616 | 1.512430e-56 | -8.615850e-47 |
| Msa0182930 | Msa0349060 | 0.805396 | 1.361912e-49 | -8.615850e-47 |
| Msa0185700 | Msa0349060 | 0.838658 | 2.522745e-57 | -8.615850e-47 |
| Msa0187070 | Msa0349060 | 0.810284 | 1.244553e-50 | -8.615850e-47 |
| Msa0193120 | Msa0349060 | 0.822704 | 2.054419e-53 | -8.615850e-47 |
| Msa0194540 | Msa0349060 | 0.805191 | 1.504020e-49 | -8.615850e-47 |
| Msa0200950 | Msa0349060 | -0.807040 | 6.136661e-50 | -8.615850e-47 |
| Msa0239660 | Msa0349060 | 0.822922 | 1.827421e-53 | -8.615850e-47 |
| Msa0241620 | Msa0349060 | 0.801647 | 8.158978e-49 | -8.615850e-47 |
| Msa0241640 | Msa0349060 | 0.805699 | 1.176748e-49 | -8.615850e-47 |
| Msa0242230 | Msa0349060 | 0.800913 | 1.152990e-48 | -8.615850e-47 |
| Msa0244270 | Msa0349060 | 0.807500 | 4.904800e-50 | -8.615850e-47 |
| Msa0244780 | Msa0349060 | 0.808155 | 3.559424e-50 | -8.615850e-47 |
| Msa0267760 | Msa0349060 | 0.813125 | 2.998535e-51 | -8.615850e-47 |
| Msa0268130 | Msa0349060 | 0.810184 | 1.307601e-50 | -8.615850e-47 |
| Msa0280490 | Msa0349060 | 0.817995 | 2.468994e-52 | -8.615850e-47 |
| Msa0280900 | Msa0349060 | 0.807683 | 4.484069e-50 | -8.615850e-47 |
| Msa0298970 | Msa0349060 | 0.802505 | 5.434780e-49 | -8.615850e-47 |
| Msa0298990 | Msa0349060 | 0.811897 | 5.563338e-51 | -8.615850e-47 |
| Msa0320100 | Msa0349060 | 0.807818 | 4.197984e-50 | -8.615850e-47 |
| Msa0332920 | Msa0349060 | 0.802184 | 6.326726e-49 | -8.615850e-47 |
| Msa0349060 | Msa0358170 | 0.860883 | 1.514162e-63 | -8.615850e-47 |
| Msa0349060 | Msa0376510 | 0.848270 | 6.821834e-60 | -8.615850e-47 |
| Msa0349060 | Msa0378080 | 0.863387 | 2.581629e-64 | -8.615850e-47 |
| Msa0349060 | Msa0384430 | 0.822550 | 2.231332e-53 | -8.615850e-47 |
| Msa0349060 | Msa0390060 | 0.823792 | 1.144238e-53 | -8.615850e-47 |
| Msa0349060 | Msa0395960 | 0.862344 | 5.416487e-64 | -8.615850e-47 |
| Msa0349060 | Msa0419820 | 0.821409 | 4.101212e-53 | -8.615850e-47 |
| Msa0349060 | Msa0425050 | 0.844242 | 8.537163e-59 | -8.615850e-47 |
| Msa0349060 | Msa0425940 | 0.843358 | 1.471614e-58 | -8.615850e-47 |
| Msa0349060 | Msa0426020 | 0.825230 | 5.249117e-54 | -8.615850e-47 |
| Msa0349060 | Msa0426160 | 0.836756 | 7.764391e-57 | -8.615850e-47 |
| Msa0349060 | Msa0442890 | 0.840579 | 7.988863e-58 | -8.615850e-47 |
| Msa0349060 | Msa0443500 | 0.841777 | 3.867412e-58 | -8.615850e-47 |
| Msa0349060 | Msa0465790 | 0.846882 | 1.642599e-59 | -8.615850e-47 |
| Msa0349060 | Msa0468160 | 0.852232 | 5.283430e-61 | -8.615850e-47 |
| Msa0349060 | Msa0470180 | 0.864638 | 1.052713e-64 | -8.615850e-47 |
| Msa0349060 | Msa0487770 | 0.812167 | 4.859121e-51 | -8.615850e-47 |
| Msa0349060 | Msa0491020 | 0.861085 | 1.314297e-63 | -8.615850e-47 |
| Msa0349060 | Msa0518040 | 0.865541 | 5.480530e-65 | -8.615850e-47 |
| Msa0349060 | Msa0522660 | 0.834460 | 2.959402e-56 | -8.615850e-47 |
| Msa0349060 | Msa0526710 | 0.807858 | 4.115603e-50 | -8.615850e-47 |
| Msa0349060 | Msa0527590 | 0.809101 | 2.234942e-50 | -8.615850e-47 |
| Msa0349060 | Msa0527600 | 0.821548 | 3.807608e-53 | -8.615850e-47 |
| Msa0349060 | Msa0546840 | 0.858222 | 9.556654e-63 | -8.615850e-47 |
| Msa0349060 | Msa0563530 | 0.806305 | 8.775651e-50 | -8.615850e-47 |
| Msa0349060 | Msa0564930 | 0.826187 | 3.113796e-54 | -8.615850e-47 |
| Msa0349060 | Msa0576690 | 0.846312 | 2.351257e-59 | -8.615850e-47 |
| Msa0349060 | Msa0576940 | 0.803688 | 3.093070e-49 | -8.615850e-47 |
| Msa0349060 | Msa0579290 | 0.804372 | 2.229603e-49 | -8.615850e-47 |
| Msa0349060 | Msa0579390 | 0.802610 | 5.171364e-49 | -8.615850e-47 |
| Msa0349060 | Msa0583740 | 0.803908 | 2.785385e-49 | -8.615850e-47 |
| Msa0349060 | Msa0590680 | 0.841520 | 4.521014e-58 | -8.615850e-47 |
| Msa0349060 | Msa0607200 | 0.825338 | 4.949599e-54 | -8.615850e-47 |
| Msa0349060 | Msa0618010 | 0.826735 | 2.304435e-54 | -8.615850e-47 |
| Msa0349060 | Msa0621120 | 0.870135 | 1.834669e-66 | -8.615850e-47 |
| Msa0349060 | Msa0630990 | 0.814426 | 1.550221e-51 | -8.615850e-47 |
| Msa0349060 | Msa0638280 | 0.817494 | 3.202924e-52 | -8.615850e-47 |
| Msa0349060 | Msa0638320 | 0.804679 | 1.924323e-49 | -8.615850e-47 |
| Msa0349060 | Msa0639370 | 0.803451 | 3.464069e-49 | -8.615850e-47 |
| Msa0349060 | Msa0657050 | 0.816578 | 5.145459e-52 | -8.615850e-47 |
| Msa0349060 | Msa0661240 | 0.819277 | 1.263858e-52 | -8.615850e-47 |
| Msa0349060 | Msa0669850 | 0.806374 | 8.486080e-50 | -8.615850e-47 |
| Msa0349060 | Msa0677270 | 0.805782 | 1.130329e-49 | -8.615850e-47 |
| Msa0349060 | Msa0677290 | 0.865070 | 7.710454e-65 | -8.615850e-47 |
| Msa0349060 | Msa0678860 | 0.803529 | 3.338286e-49 | -8.615850e-47 |
| Msa0349060 | Msa0728280 | 0.810622 | 1.051882e-50 | -8.615850e-47 |
| Msa0349060 | Msa0728380 | 0.806785 | 6.947656e-50 | -8.615850e-47 |
| Msa0349060 | Msa0728540 | 0.805033 | 1.623048e-49 | -8.615850e-47 |
| Msa0349060 | Msa0734660 | 0.829783 | 4.243441e-55 | -8.615850e-47 |
| Msa0349060 | Msa0767520 | 0.814063 | 1.863884e-51 | -8.615850e-47 |
| Msa0349060 | Msa0776220 | 0.829817 | 4.163431e-55 | -8.615850e-47 |
| Msa0349060 | Msa0776480 | 0.814527 | 1.472548e-51 | -8.615850e-47 |
| Msa0349060 | Msa0777050 | 0.820785 | 5.708205e-53 | -8.615850e-47 |
| Msa0349060 | Msa0790850 | 0.804526 | 2.071181e-49 | -8.615850e-47 |
| Msa0349060 | Msa0813670 | 0.828384 | 9.264761e-55 | -8.615850e-47 |
| Msa0349060 | Msa0813720 | 0.831610 | 1.514270e-55 | -8.615850e-47 |
| Msa0349060 | Msa0813740 | 0.803202 | 3.900997e-49 | -8.615850e-47 |
| Msa0349060 | Msa0816640 | 0.814054 | 1.873298e-51 | -8.615850e-47 |
| Msa0349060 | Msa0819030 | -0.805852 | 1.092918e-49 | -8.615850e-47 |
| Msa0349060 | Msa0831580 | 0.806456 | 8.152282e-50 | -8.615850e-47 |
| Msa0349060 | Msa0854120 | 0.823278 | 1.509321e-53 | -8.615850e-47 |
| Msa0349060 | Msa0854830 | 0.803463 | 3.444257e-49 | -8.615850e-47 |
| Msa0349060 | Msa0913090 | 0.800946 | 1.135445e-48 | -8.615850e-47 |
| Msa0349060 | Msa0941750 | 0.816843 | 4.487637e-52 | -8.615850e-47 |
| Msa0349060 | Msa0950320 | 0.812256 | 4.644851e-51 | -8.615850e-47 |
| Msa0349060 | Msa1012700 | 0.800999 | 1.107122e-48 | -8.615850e-47 |
| Msa0349060 | Msa1012810 | 0.806762 | 7.025784e-50 | -8.615850e-47 |
| Msa0349060 | Msa1014500 | 0.802481 | 5.496950e-49 | -8.615850e-47 |
| Msa0349060 | Msa1018790 | 0.812719 | 3.680484e-51 | -8.615850e-47 |
| Msa0349060 | Msa1044340 | 0.810853 | 9.373604e-51 | -8.615850e-47 |
| Msa0349060 | Msa1048330 | 0.802576 | 5.253579e-49 | -8.615850e-47 |
| Msa0349060 | Msa1049410 | 0.803535 | 3.328721e-49 | -8.615850e-47 |
| Msa0349060 | Msa1051200 | 0.802080 | 6.646164e-49 | -8.615850e-47 |
| Msa0349060 | Msa1054240 | 0.808166 | 3.538719e-50 | -8.615850e-47 |
| Msa0349060 | Msa1082700 | 0.805716 | 1.166877e-49 | -8.615850e-47 |
| Msa0349060 | Msa1084470 | 0.804953 | 1.686853e-49 | -8.615850e-47 |
| Msa0349060 | Msa1094420 | 0.817421 | 3.326147e-52 | -8.615850e-47 |
| Msa0349060 | Msa1111630 | 0.852470 | 4.521492e-61 | -8.615850e-47 |
| Msa0349060 | Msa1166860 | 0.802240 | 6.163680e-49 | -8.615850e-47 |
| Msa0349060 | Msa1167170 | 0.846594 | 1.968641e-59 | -8.615850e-47 |
| Msa0349060 | Msa1171690 | 0.838621 | 2.579976e-57 | -8.615850e-47 |
| Msa0349060 | Msa1174010 | 0.809795 | 1.586198e-50 | -8.615850e-47 |
| Msa0349060 | Msa1177240 | 0.814030 | 1.895712e-51 | -8.615850e-47 |
| Msa0349060 | Msa1188940 | 0.869649 | 2.643818e-66 | -8.615850e-47 |
| Msa0349060 | Msa1193070 | 0.814764 | 1.304793e-51 | -8.615850e-47 |
| Msa0349060 | Msa1226620 | 0.836345 | 9.883577e-57 | -8.615850e-47 |
| Msa0349060 | Msa1243170 | 0.841599 | 4.309902e-58 | -8.615850e-47 |
| Msa0349060 | Msa1284520 | 0.872882 | 2.259129e-67 | -8.615850e-47 |
| Msa0349060 | Msa1317030 | 0.816200 | 6.249603e-52 | -8.615850e-47 |
| Msa0349060 | Msa1324000 | 0.859060 | 5.369422e-63 | -8.615850e-47 |
| Msa0349060 | Msa1341070 | 0.801659 | 8.113760e-49 | -8.615850e-47 |
| Msa0349060 | Msa1362510 | 0.802923 | 4.455571e-49 | -8.615850e-47 |
| Msa0349060 | Msa1382310 | 0.840800 | 6.992265e-58 | -8.615850e-47 |
| Msa0349060 | Msa1389950 | 0.803475 | 3.425590e-49 | -8.615850e-47 |
| Msa0349060 | Msa1390310 | 0.802042 | 6.768638e-49 | -8.615850e-47 |
| Msa0349060 | Msa1398480 | 0.846228 | 2.477697e-59 | -8.615850e-47 |
| Msa0349060 | Msa1406040 | 0.832852 | 7.463353e-56 | -8.615850e-47 |
| Msa0349060 | Msa1425250 | 0.804652 | 1.949602e-49 | -8.615850e-47 |
| Msa0349060 | Msa1427830 | 0.831559 | 1.558800e-55 | -8.615850e-47 |
| Msa0349060 | Msa1447230 | 0.822649 | 2.115314e-53 | -8.615850e-47 |
| Msa0349060 | Msa1447300 | 0.853189 | 2.816199e-61 | -8.615850e-47 |
| Msa0349060 | Msa1448690 | 0.816264 | 6.049296e-52 | -8.615850e-47 |
| Msa0349060 | Msa1449880 | 0.815641 | 8.330854e-52 | -8.615850e-47 |
| Msa0349060 | Msa1453620 | 0.855984 | 4.371886e-62 | -8.615850e-47 |
| Msa0349060 | Msa1454110 | 0.828417 | 9.094503e-55 | -8.615850e-47 |
| Msa0349060 | Msa1460440 | 0.844989 | 5.372150e-59 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0349060 | MtrunA17_Chr1g0164481 | 93.923 | 181 | 10 | 1 | 1 | 180 | 1 | 181 | 3.06e-120 | 337 |
| Msa0349060 | MtrunA17_Chr3g0082241 | 95.302 | 149 | 6 | 1 | 1 | 148 | 32 | 180 | 1.65e-102 | 292 |
| Msa0349060 | MtrunA17_Chr1g0211871 | 36.145 | 83 | 51 | 1 | 85 | 167 | 82 | 162 | 2.83e-13 | 64.7 |
| Msa0349060 | MtrunA17_Chr3g0125821 | 29.524 | 105 | 71 | 2 | 74 | 178 | 70 | 171 | 1.56e-12 | 62.8 |
| Msa0349060 | MtrunA17_Chr2g0317731 | 26.829 | 123 | 79 | 3 | 63 | 178 | 53 | 171 | 3.61e-11 | 58.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0349060 | AT3G06730.1 | 70.745 | 188 | 42 | 5 | 1 | 180 | 1 | 183 | 7.91e-86 | 250 |
| Msa0349060 | AT1G50320.1 | 27.429 | 175 | 115 | 4 | 3 | 177 | 11 | 173 | 1.34e-13 | 65.9 |
| Msa0349060 | AT1G43560.1 | 32.955 | 88 | 57 | 1 | 93 | 180 | 78 | 163 | 2.12e-11 | 59.7 |
Find 46 sgRNAs with CRISPR-Local
Find 309 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTATAATTGTAGCCTATTT+TGG | 0.101435 | 3_1:-12266729 | Msa0349060:three_prime_UTR |
| CTAACCAATTCATATGAATT+TGG | 0.168019 | 3_1:-12266691 | Msa0349060:three_prime_UTR |
| CTTCAATTCTGTCCCAAAAT+AGG | 0.291332 | 3_1:+12266716 | None:intergenic |
| AAAGCCAAATTCATATGAAT+TGG | 0.354885 | 3_1:+12266687 | None:intergenic |
| GTGGATATGGTGAGAGGATA+AGG | 0.365258 | 3_1:+12270852 | None:intergenic |
| GTGTGGTCCATGCATCTTAA+TGG | 0.366660 | 3_1:-12270562 | Msa0349060:CDS |
| TTTGATGTATTTCAGGTAAG+AGG | 0.368265 | 3_1:-12266924 | Msa0349060:intron |
| AAAGAAATGTAAAACAGTTA+AGG | 0.375104 | 3_1:-12266804 | Msa0349060:exon |
| AGATCCTACAAGATATTGTT+TGG | 0.381266 | 3_1:-12266750 | Msa0349060:three_prime_UTR |
| GATCAGGACTAATAAAGAAT+AGG | 0.400554 | 3_1:+12266892 | None:intergenic |
| TATACCAAACAATATCTTGT+AGG | 0.419629 | 3_1:+12266746 | None:intergenic |
| TTTGAAGAGAAAGTTGAAAA+GGG | 0.428856 | 3_1:+12270927 | None:intergenic |
| ATTGTTGAAGTCAGTGGATA+TGG | 0.430845 | 3_1:+12270839 | None:intergenic |
| AATGGCTCAAGAACTTGAAA+TGG | 0.441341 | 3_1:-12270544 | Msa0349060:intron |
| ATCAGGACTAATAAAGAATA+GGG | 0.446630 | 3_1:+12266893 | None:intergenic |
| AAGAAATGTAAAACAGTTAA+GGG | 0.448450 | 3_1:-12266803 | Msa0349060:exon |
| ATATCTCTCATCATCTGTAT+TGG | 0.448708 | 3_1:+12266834 | None:intergenic |
| TTGAGTGATGAAAGAGAAAG+AGG | 0.451684 | 3_1:+12271042 | None:intergenic |
| CTAGAAATTCCAACTATGTC+AGG | 0.465876 | 3_1:+12266771 | None:intergenic |
| TTGAAGTCGACATATGTTGT+AGG | 0.467759 | 3_1:-12266629 | Msa0349060:three_prime_UTR |
| AAAGATGCTATTAGAACTGA+AGG | 0.473614 | 3_1:-12266864 | Msa0349060:CDS |
| CTAAAATCTTCCATCTTCAA+TGG | 0.475382 | 3_1:-12271000 | Msa0349060:exon |
| GCGTAGAAATCAATAATAAG+AGG | 0.481926 | 3_1:+12270591 | None:intergenic |
| TGGAAGAGAGCCATTGAAGA+TGG | 0.499467 | 3_1:+12270990 | None:intergenic |
| CTTTCTATTGTTGAAGTCAG+TGG | 0.499988 | 3_1:+12270833 | None:intergenic |
| TTGCTTTGCAAACCACCTAA+AGG | 0.504152 | 3_1:-12270810 | Msa0349060:CDS |
| AGTTGAAAAGGGTGAAAGAG+TGG | 0.510023 | 3_1:+12270938 | None:intergenic |
| TACTCATCACCTGACATAGT+TGG | 0.517973 | 3_1:-12266780 | Msa0349060:three_prime_UTR |
| TGAAGTCGACATATGTTGTA+GGG | 0.532947 | 3_1:-12266628 | Msa0349060:three_prime_UTR |
| TCTTGAGCCATTAAGATGCA+TGG | 0.532979 | 3_1:+12270555 | None:intergenic |
| TTGATGTATTTCAGGTAAGA+GGG | 0.540490 | 3_1:-12266923 | Msa0349060:intron |
| TGAATTTGCACGCGACATGC+AGG | 0.541865 | 3_1:-12267897 | Msa0349060:intron |
| GGACTAATAAAGAATAGGGT+AGG | 0.548631 | 3_1:+12266897 | None:intergenic |
| GAAGAGGGAGAAACAGAGAG+AGG | 0.553451 | 3_1:+12270903 | None:intergenic |
| TGAGTGATGAAAGAGAAAGA+GGG | 0.553532 | 3_1:+12271043 | None:intergenic |
| GATTTCTACGCGACATGGTG+TGG | 0.564485 | 3_1:-12270579 | Msa0349060:CDS |
| AAGTCAGTGGATATGGTGAG+AGG | 0.568271 | 3_1:+12270846 | None:intergenic |
| GATGTGGAAGAGTGTAGGAA+TGG | 0.586021 | 3_1:+12270970 | None:intergenic |
| TTATTGATTTCTACGCGACA+TGG | 0.587417 | 3_1:-12270584 | Msa0349060:CDS |
| GAAATTCAAGAGCTTGTGAA+GGG | 0.595327 | 3_1:-12270627 | Msa0349060:CDS |
| AGAAATTCAAGAGCTTGTGA+AGG | 0.600875 | 3_1:-12270628 | Msa0349060:CDS |
| AGAGTGGATAGTTTGTGATG+TGG | 0.635573 | 3_1:+12270954 | None:intergenic |
| TTTGTGATGTGGAAGAGTGT+AGG | 0.646507 | 3_1:+12270965 | None:intergenic |
| AGGATGTTGATGTGTTGAAG+AGG | 0.646945 | 3_1:+12270872 | None:intergenic |
| AAGATGCTATTAGAACTGAA+GGG | 0.684088 | 3_1:-12266863 | Msa0349060:CDS |
| TGTTAAAGAAGACTATCTTG+TGG | 0.696050 | 3_1:-12270781 | Msa0349060:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGTTTTTTTAATACTAAATT+TGG | - | chr3_1:12266869-12266888 | Msa0349060:CDS | 10.0% |
| !!! | GTTTTTTTAATACTAAATTT+GGG | - | chr3_1:12266870-12266889 | Msa0349060:CDS | 10.0% |
| !!! | TAAAAATTGAAAATTTTCAT+TGG | - | chr3_1:12266930-12266949 | Msa0349060:intron | 10.0% |
| !!! | ATCTTTGTTTAAGTTTAAAT+TGG | + | chr3_1:12267524-12267543 | None:intergenic | 15.0% |
| !! | AATCTTAAATATAACACAAA+TGG | + | chr3_1:12267715-12267734 | None:intergenic | 15.0% |
| !!! | TCATGTTGTTTTTAATTAAT+AGG | - | chr3_1:12268073-12268092 | Msa0349060:intron | 15.0% |
| !!! | CATGTTGTTTTTAATTAATA+GGG | - | chr3_1:12268074-12268093 | Msa0349060:intron | 15.0% |
| !!! | ATGTTGTTTTTAATTAATAG+GGG | - | chr3_1:12268075-12268094 | Msa0349060:intron | 15.0% |
| !! | ATGAAAAATAGTATATAAGT+GGG | + | chr3_1:12268235-12268254 | None:intergenic | 15.0% |
| !! | AATGAAAAATAGTATATAAG+TGG | + | chr3_1:12268236-12268255 | None:intergenic | 15.0% |
| !! | GATTATCTTAAAAAAAATAG+TGG | - | chr3_1:12269838-12269857 | Msa0349060:intron | 15.0% |
| !! | AAACTGTTAAAGAACTAAAA+TGG | + | chr3_1:12267264-12267283 | None:intergenic | 20.0% |
| !! | CTTATTTGAATTTATCTACA+GGG | + | chr3_1:12267501-12267520 | None:intergenic | 20.0% |
| !! | TTGTATTCTAAACAATACTT+AGG | - | chr3_1:12267980-12267999 | Msa0349060:intron | 20.0% |
| !!! | TGTTGTTTTTAATTAATAGG+GGG | - | chr3_1:12268076-12268095 | Msa0349060:intron | 20.0% |
| !! | TATACTCTAATAAATGATGA+TGG | + | chr3_1:12268495-12268514 | None:intergenic | 20.0% |
| !! | GTTTACATATAAACTAACTA+TGG | + | chr3_1:12268527-12268546 | None:intergenic | 20.0% |
| !!! | GTTAGTTTATATGTAAACTA+TGG | - | chr3_1:12268529-12268548 | Msa0349060:intron | 20.0% |
| !! | ATAGTTGAGACTTATTTATA+GGG | + | chr3_1:12268600-12268619 | None:intergenic | 20.0% |
| !! | AATAGTTGAGACTTATTTAT+AGG | + | chr3_1:12268601-12268620 | None:intergenic | 20.0% |
| !! | GTAAAATATTCTGGATTTAT+AGG | - | chr3_1:12269194-12269213 | Msa0349060:intron | 20.0% |
| !! | ATATTGAATATTCTTTGAAC+AGG | - | chr3_1:12269257-12269276 | Msa0349060:intron | 20.0% |
| !! | TTCATGAAAAATAGTATACA+GGG | + | chr3_1:12269477-12269496 | None:intergenic | 20.0% |
| !! | ATTCATGAAAAATAGTATAC+AGG | + | chr3_1:12269478-12269497 | None:intergenic | 20.0% |
| !! | TAAGAGTTATTGAATATTGT+TGG | - | chr3_1:12269964-12269983 | Msa0349060:intron | 20.0% |
| !!! | TCAAAATTTTGCCTTTATTA+TGG | - | chr3_1:12270312-12270331 | Msa0349060:intron | 20.0% |
| !!! | ATAAACTTTTGATGTATTTC+AGG | - | chr3_1:12270676-12270695 | Msa0349060:intron | 20.0% |
| !! | AAAGAAATGTAAAACAGTTA+AGG | - | chr3_1:12270803-12270822 | Msa0349060:CDS | 20.0% |
| !! | AAGAAATGTAAAACAGTTAA+GGG | - | chr3_1:12270804-12270823 | Msa0349060:CDS | 20.0% |
| ! | TTTGAAGAGAAAGTTGAAAA+GGG | + | chr3_1:12266683-12266702 | None:intergenic | 25.0% |
| !!! | TTTTGAAGAGAAAGTTGAAA+AGG | + | chr3_1:12266684-12266703 | None:intergenic | 25.0% |
| !! | TCTTTAACATGTTTTCCTTT+AGG | + | chr3_1:12266815-12266834 | None:intergenic | 25.0% |
| ! | AAAAAGAGATTCTTTATCTG+AGG | + | chr3_1:12267233-12267252 | None:intergenic | 25.0% |
| !!! | TTTAACAGTTTTGTAGATTG+TGG | - | chr3_1:12267273-12267292 | Msa0349060:intron | 25.0% |
| ! | GTAATTATTCACCAAAAAGT+TGG | - | chr3_1:12267312-12267331 | Msa0349060:intron | 25.0% |
| !! | TAATACTTGAACCAACTTTT+TGG | + | chr3_1:12267326-12267345 | None:intergenic | 25.0% |
| !! | AACCAGGCTTAAATATTTTA+AGG | + | chr3_1:12267353-12267372 | None:intergenic | 25.0% |
| ! | TAAAATATTTAAGCCTGGTT+TGG | - | chr3_1:12267353-12267372 | Msa0349060:intron | 25.0% |
| ! | GCTTATTTGAATTTATCTAC+AGG | + | chr3_1:12267502-12267521 | None:intergenic | 25.0% |
| ! | CTAGCAGTTATTGTAATAAT+TGG | - | chr3_1:12267634-12267653 | Msa0349060:intron | 25.0% |
| ! | TTAACTCAATTCTACAAAAC+TGG | - | chr3_1:12268188-12268207 | Msa0349060:intron | 25.0% |
| ! | AAAAATAGTATATAAGTGGG+AGG | + | chr3_1:12268232-12268251 | None:intergenic | 25.0% |
| ! | CTGGAAATATGTATATAAGT+GGG | + | chr3_1:12268436-12268455 | None:intergenic | 25.0% |
| ! | TCTGGAAATATGTATATAAG+TGG | + | chr3_1:12268437-12268456 | None:intergenic | 25.0% |
| ! | ATATGTAAACTATGGTTAGT+TGG | - | chr3_1:12268537-12268556 | Msa0349060:intron | 25.0% |
| ! | TAGTTGAGACTTATTTATAG+GGG | + | chr3_1:12268599-12268618 | None:intergenic | 25.0% |
| !!! | ACTTTGTTTTTTGTAGTCAT+AGG | - | chr3_1:12269013-12269032 | Msa0349060:intron | 25.0% |
| ! | GAATTGTTAAAATAGACGTT+GGG | - | chr3_1:12269124-12269143 | Msa0349060:intron | 25.0% |
| ! | TCTGAACTTGTAAAATATTC+TGG | - | chr3_1:12269185-12269204 | Msa0349060:intron | 25.0% |
| ! | TGTATGGTTCTTAATGTTTA+AGG | - | chr3_1:12269512-12269531 | Msa0349060:intron | 25.0% |
| !! | GCATATTTCTATTGATTGTA+TGG | - | chr3_1:12269538-12269557 | Msa0349060:intron | 25.0% |
| !! | ATTGTATGGTTGTTAATTTG+AGG | - | chr3_1:12269552-12269571 | Msa0349060:intron | 25.0% |
| !! | TTGTATGGTTGTTAATTTGA+GGG | - | chr3_1:12269553-12269572 | Msa0349060:intron | 25.0% |
| ! | TACTCTTTACTTACTAACAT+TGG | + | chr3_1:12269587-12269606 | None:intergenic | 25.0% |
| ! | ACGTATAAACATGATTAAGA+TGG | + | chr3_1:12270596-12270615 | None:intergenic | 25.0% |
| ! | ACGTTTATTACACACATAAT+TGG | - | chr3_1:12270612-12270631 | Msa0349060:CDS | 25.0% |
| ! | ATCAGGACTAATAAAGAATA+GGG | + | chr3_1:12270717-12270736 | None:intergenic | 25.0% |
| !!! | GTTCTAATAGCATCTTTTTT+TGG | + | chr3_1:12270740-12270759 | None:intergenic | 25.0% |
| ! | TATACCAAACAATATCTTGT+AGG | + | chr3_1:12270864-12270883 | None:intergenic | 25.0% |
| !! | GTATAATTGTAGCCTATTTT+GGG | - | chr3_1:12270879-12270898 | Msa0349060:CDS | 25.0% |
| ! | CTAACCAATTCATATGAATT+TGG | - | chr3_1:12270916-12270935 | Msa0349060:CDS | 25.0% |
| ! | AAAGCCAAATTCATATGAAT+TGG | + | chr3_1:12270923-12270942 | None:intergenic | 25.0% |
| CTAAAATCTTCCATCTTCAA+TGG | - | chr3_1:12266607-12266626 | Msa0349060:three_prime_UTR | 30.0% | |
| ! | TTAACATGTTTTCCTTTAGG+TGG | + | chr3_1:12266812-12266831 | None:intergenic | 30.0% |
| TGTTAAAGAAGACTATCTTG+TGG | - | chr3_1:12266826-12266845 | Msa0349060:CDS | 30.0% | |
| TATAGCATAGAATTCACAAG+AGG | + | chr3_1:12266912-12266931 | None:intergenic | 30.0% | |
| GCGTAGAAATCAATAATAAG+AGG | + | chr3_1:12267019-12267038 | None:intergenic | 30.0% | |
| ! | TAGATTGTGGATTGTGATAT+GGG | - | chr3_1:12267286-12267305 | Msa0349060:intron | 30.0% |
| CTCCTTAAAATATTTAAGCC+TGG | - | chr3_1:12267348-12267367 | Msa0349060:intron | 30.0% | |
| !! | TACTAGTCTGTTTTACTTCT+AGG | + | chr3_1:12267550-12267569 | None:intergenic | 30.0% |
| TGCCTAGAAGTAAATTCAAT+TGG | - | chr3_1:12267580-12267599 | Msa0349060:intron | 30.0% | |
| AGCCAATTGAATTTACTTCT+AGG | + | chr3_1:12267585-12267604 | None:intergenic | 30.0% | |
| AGTAAATTCAATTGGCTACA+AGG | - | chr3_1:12267588-12267607 | Msa0349060:intron | 30.0% | |
| !! | ACAAGGTTTGACTTGATTAT+TGG | - | chr3_1:12267605-12267624 | Msa0349060:intron | 30.0% |
| GCTATACCATCTAATTCTAT+CGG | + | chr3_1:12267663-12267682 | None:intergenic | 30.0% | |
| TCATTAAAATCTATCCAGTG+TGG | - | chr3_1:12267757-12267776 | Msa0349060:intron | 30.0% | |
| !! | TGTTTTTAATTAATAGGGGG+AGG | - | chr3_1:12268079-12268098 | Msa0349060:intron | 30.0% |
| ACAATGCATTTATCCAAGAT+TGG | + | chr3_1:12268795-12268814 | None:intergenic | 30.0% | |
| ATAGGGGTAAACTTGTAATA+TGG | - | chr3_1:12268917-12268936 | Msa0349060:intron | 30.0% | |
| CTATTACAGAGCTATGATTA+AGG | + | chr3_1:12268978-12268997 | None:intergenic | 30.0% | |
| AAACAGTTGATCACAAAGTT+TGG | + | chr3_1:12269048-12269067 | None:intergenic | 30.0% | |
| !! | TTATCTGTCTACTTTAGAGT+CGG | - | chr3_1:12269087-12269106 | Msa0349060:intron | 30.0% |
| GGAATTGTTAAAATAGACGT+TGG | - | chr3_1:12269123-12269142 | Msa0349060:intron | 30.0% | |
| ! | TTCTGGATTTATAGGTTTTG+AGG | - | chr3_1:12269202-12269221 | Msa0349060:intron | 30.0% |
| ! | TGGATCTATTATGTTACTTC+AGG | + | chr3_1:12269234-12269253 | None:intergenic | 30.0% |
| TGAAGTAACATAATAGATCC+AGG | - | chr3_1:12269233-12269252 | Msa0349060:intron | 30.0% | |
| CAAAGAATATTCAATATGCC+TGG | + | chr3_1:12269254-12269273 | None:intergenic | 30.0% | |
| AATTTATGCATATACCCCTT+TGG | - | chr3_1:12269401-12269420 | Msa0349060:intron | 30.0% | |
| AAGCTGCACAAATTTATTGA+AGG | + | chr3_1:12269634-12269653 | None:intergenic | 30.0% | |
| ! | CAAGGTTACAAGATTTTTGA+CGG | + | chr3_1:12269793-12269812 | None:intergenic | 30.0% |
| TTCAAGTCATTGGAATAACA+AGG | + | chr3_1:12269811-12269830 | None:intergenic | 30.0% | |
| TAAGATGAGGACCATAATAA+AGG | + | chr3_1:12270326-12270345 | None:intergenic | 30.0% | |
| CTAGTACCATCTTTGAATTT+GGG | + | chr3_1:12270382-12270401 | None:intergenic | 30.0% | |
| ACTAGTACCATCTTTGAATT+TGG | + | chr3_1:12270383-12270402 | None:intergenic | 30.0% | |
| ! | TTTGATGTATTTCAGGTAAG+AGG | - | chr3_1:12270683-12270702 | Msa0349060:intron | 30.0% |
| ! | TTGATGTATTTCAGGTAAGA+GGG | - | chr3_1:12270684-12270703 | Msa0349060:intron | 30.0% |
| GATCAGGACTAATAAAGAAT+AGG | + | chr3_1:12270718-12270737 | None:intergenic | 30.0% | |
| !!! | ATAGCATCTTTTTTTGGATC+AGG | + | chr3_1:12270734-12270753 | None:intergenic | 30.0% |
| AAAGATGCTATTAGAACTGA+AGG | - | chr3_1:12270743-12270762 | Msa0349060:intron | 30.0% | |
| AAGATGCTATTAGAACTGAA+GGG | - | chr3_1:12270744-12270763 | Msa0349060:intron | 30.0% | |
| ATATCTCTCATCATCTGTAT+TGG | + | chr3_1:12270776-12270795 | None:intergenic | 30.0% | |
| AGATCCTACAAGATATTGTT+TGG | - | chr3_1:12270857-12270876 | Msa0349060:CDS | 30.0% | |
| ! | GGTATAATTGTAGCCTATTT+TGG | - | chr3_1:12270878-12270897 | Msa0349060:CDS | 30.0% |
| GAAGAGGAAAAAGAAGAAGA+GGG | + | chr3_1:12266722-12266741 | None:intergenic | 35.0% | |
| TGAAGAGGAAAAAGAAGAAG+AGG | + | chr3_1:12266723-12266742 | None:intergenic | 35.0% | |
| ATTGTTGAAGTCAGTGGATA+TGG | + | chr3_1:12266771-12266790 | None:intergenic | 35.0% | |
| CTTTCTATTGTTGAAGTCAG+TGG | + | chr3_1:12266777-12266796 | None:intergenic | 35.0% | |
| AGAAATTCAAGAGCTTGTGA+AGG | - | chr3_1:12266979-12266998 | Msa0349060:intron | 35.0% | |
| GAAATTCAAGAGCTTGTGAA+GGG | - | chr3_1:12266980-12266999 | Msa0349060:intron | 35.0% | |
| !! | TTATTGATTTCTACGCGACA+TGG | - | chr3_1:12267023-12267042 | Msa0349060:intron | 35.0% |
| AATGGCTCAAGAACTTGAAA+TGG | - | chr3_1:12267063-12267082 | Msa0349060:intron | 35.0% | |
| ACCATTGCTCTTATATGACT+AGG | - | chr3_1:12267123-12267142 | Msa0349060:intron | 35.0% | |
| TCCTAGTCATATAAGAGCAA+TGG | + | chr3_1:12267127-12267146 | None:intergenic | 35.0% | |
| ! | GTAGATTGTGGATTGTGATA+TGG | - | chr3_1:12267285-12267304 | Msa0349060:intron | 35.0% |
| ATTTCAAAATCATGCCACAC+TGG | + | chr3_1:12267774-12267793 | None:intergenic | 35.0% | |
| TACCTTGACTTCAAAGTTAG+AGG | - | chr3_1:12267804-12267823 | Msa0349060:intron | 35.0% | |
| !! | AACCTCTAACTTTGAAGTCA+AGG | + | chr3_1:12267809-12267828 | None:intergenic | 35.0% |
| AGTTAGAGGTTTCTATCTGT+TGG | - | chr3_1:12267818-12267837 | Msa0349060:intron | 35.0% | |
| TGGTTGATCAGTAACAACAT+AGG | - | chr3_1:12267851-12267870 | Msa0349060:intron | 35.0% | |
| GTTCTCATGTTGCATTAGTT+AGG | - | chr3_1:12267896-12267915 | Msa0349060:intron | 35.0% | |
| CTTAGGCTATTCTTTGTACA+CGG | - | chr3_1:12267997-12268016 | Msa0349060:intron | 35.0% | |
| TTAGGCTATTCTTTGTACAC+GGG | - | chr3_1:12267998-12268017 | Msa0349060:intron | 35.0% | |
| GAAAATGTGAGAAGAGTGAA+AGG | - | chr3_1:12268024-12268043 | Msa0349060:intron | 35.0% | |
| GACTGTGTTCAAATCTACAA+AGG | + | chr3_1:12268127-12268146 | None:intergenic | 35.0% | |
| AGTCTTACGTTAGATGAGAT+AGG | + | chr3_1:12268260-12268279 | None:intergenic | 35.0% | |
| !! | TCTGAAGGCATCATATAATG+TGG | - | chr3_1:12268359-12268378 | Msa0349060:intron | 35.0% |
| GGCATCATATAATGTGGATT+AGG | - | chr3_1:12268365-12268384 | Msa0349060:intron | 35.0% | |
| !! | CCTTAAAAGTCGGTTTTGTA+GGG | + | chr3_1:12268401-12268420 | None:intergenic | 35.0% |
| !! | ACCTTAAAAGTCGGTTTTGT+AGG | + | chr3_1:12268402-12268421 | None:intergenic | 35.0% |
| ACATCGATCACCTTAAAAGT+CGG | + | chr3_1:12268411-12268430 | None:intergenic | 35.0% | |
| ! | GTAAACTATGGTTAGTTGGT+TGG | - | chr3_1:12268541-12268560 | Msa0349060:intron | 35.0% |
| ACTCTACTATGAGTCTCTAT+GGG | - | chr3_1:12268654-12268673 | Msa0349060:intron | 35.0% | |
| !! | GTGCATAAGAGTATTCATGT+GGG | + | chr3_1:12268685-12268704 | None:intergenic | 35.0% |
| !! | AGTGCATAAGAGTATTCATG+TGG | + | chr3_1:12268686-12268705 | None:intergenic | 35.0% |
| TTAGTAATCATGGAATCCCA+GGG | + | chr3_1:12268737-12268756 | None:intergenic | 35.0% | |
| ! | GCTGATGATGTTAGTAATCA+TGG | + | chr3_1:12268747-12268766 | None:intergenic | 35.0% |
| TGCATTGTTACTCAACTTAG+TGG | - | chr3_1:12268807-12268826 | Msa0349060:intron | 35.0% | |
| GCATTGTTACTCAACTTAGT+GGG | - | chr3_1:12268808-12268827 | Msa0349060:intron | 35.0% | |
| TTACTCAACTTAGTGGGAAA+AGG | - | chr3_1:12268814-12268833 | Msa0349060:intron | 35.0% | |
| GACTCACATTCATGATAAGT+AGG | - | chr3_1:12268876-12268895 | Msa0349060:intron | 35.0% | |
| !! | TATCTGTCTACTTTAGAGTC+GGG | - | chr3_1:12269088-12269107 | Msa0349060:intron | 35.0% |
| TAAAATAGACGTTGGGATTC+TGG | - | chr3_1:12269131-12269150 | Msa0349060:intron | 35.0% | |
| !!! | GGATTTATAGGTTTTGAGGA+TGG | - | chr3_1:12269206-12269225 | Msa0349060:intron | 35.0% |
| AACTCACAACAAAACCAACT+GGG | + | chr3_1:12269333-12269352 | None:intergenic | 35.0% | |
| AAACTCACAACAAAACCAAC+TGG | + | chr3_1:12269334-12269353 | None:intergenic | 35.0% | |
| AATTCTAACAGCTGCAGTTA+TGG | - | chr3_1:12269424-12269443 | Msa0349060:intron | 35.0% | |
| ATTAAGAACCATACAAGCGT+AGG | + | chr3_1:12269507-12269526 | None:intergenic | 35.0% | |
| ATCATGCAAGTTCAAGTCAT+TGG | + | chr3_1:12269821-12269840 | None:intergenic | 35.0% | |
| TGGAAAAAAGAAACATACCG+TGG | - | chr3_1:12269858-12269877 | Msa0349060:intron | 35.0% | |
| TTCATTGTGTTGGGTATGAA+GGG | - | chr3_1:12270065-12270084 | Msa0349060:intron | 35.0% | |
| AAACTTCATAAACCTTACCC+AGG | + | chr3_1:12270126-12270145 | None:intergenic | 35.0% | |
| GGGTAAGGTTTATGAAGTTT+AGG | - | chr3_1:12270126-12270145 | Msa0349060:intron | 35.0% | |
| TGGAAATTCTGCCTTCATTA+TGG | - | chr3_1:12270207-12270226 | Msa0349060:intron | 35.0% | |
| ! | TTTTGAACACACTACATGCT+CGG | + | chr3_1:12270298-12270317 | None:intergenic | 35.0% |
| TATTATGGTCCTCATCTTAC+TGG | - | chr3_1:12270327-12270346 | Msa0349060:intron | 35.0% | |
| !! | CGGTTTTGTCATGTTAAGTT+AGG | - | chr3_1:12270351-12270370 | Msa0349060:intron | 35.0% |
| !! | GTCTATCCTAGATTTGTTGA+TGG | - | chr3_1:12270401-12270420 | Msa0349060:intron | 35.0% |
| ! | TGGAAATTTTGCCTTCATTG+TGG | - | chr3_1:12270479-12270498 | Msa0349060:intron | 35.0% |
| GGACTAATAAAGAATAGGGT+AGG | + | chr3_1:12270713-12270732 | None:intergenic | 35.0% | |
| CTAGAAATTCCAACTATGTC+AGG | + | chr3_1:12270839-12270858 | None:intergenic | 35.0% | |
| CTTCAATTCTGTCCCAAAAT+AGG | + | chr3_1:12270894-12270913 | None:intergenic | 35.0% | |
| TTGAAGTCGACATATGTTGT+AGG | - | chr3_1:12270978-12270997 | Msa0349060:CDS | 35.0% | |
| TGAAGTCGACATATGTTGTA+GGG | - | chr3_1:12270979-12270998 | Msa0349060:CDS | 35.0% | |
| ! | TTTGTGATGTGGAAGAGTGT+AGG | + | chr3_1:12266645-12266664 | None:intergenic | 40.0% |
| ! | AGAGTGGATAGTTTGTGATG+TGG | + | chr3_1:12266656-12266675 | None:intergenic | 40.0% |
| AGTTGAAAAGGGTGAAAGAG+TGG | + | chr3_1:12266672-12266691 | None:intergenic | 40.0% | |
| AGGATGTTGATGTGTTGAAG+AGG | + | chr3_1:12266738-12266757 | None:intergenic | 40.0% | |
| TTGCTTTGCAAACCACCTAA+AGG | - | chr3_1:12266797-12266816 | Msa0349060:exon | 40.0% | |
| TCTTGAGCCATTAAGATGCA+TGG | + | chr3_1:12267055-12267074 | None:intergenic | 40.0% | |
| !!! | GTGTTGCTTGTCACATGTTT+TGG | - | chr3_1:12267151-12267170 | Msa0349060:intron | 40.0% |
| ! | TCTTTATCTGAGGCTGATAC+AGG | + | chr3_1:12267223-12267242 | None:intergenic | 40.0% |
| TTCCACTTGTCTCACTGTAT+GGG | + | chr3_1:12267477-12267496 | None:intergenic | 40.0% | |
| ATTCCACTTGTCTCACTGTA+TGG | + | chr3_1:12267478-12267497 | None:intergenic | 40.0% | |
| TGGACACCGATAGAATTAGA+TGG | - | chr3_1:12267654-12267673 | Msa0349060:intron | 40.0% | |
| TATCTGTTGGACAGTCTGTT+TGG | - | chr3_1:12267831-12267850 | Msa0349060:intron | 40.0% | |
| TCTCTATGCAGAAGATAGCA+TGG | - | chr3_1:12267946-12267965 | Msa0349060:CDS | 40.0% | |
| TAGGCTATTCTTTGTACACG+GGG | - | chr3_1:12267999-12268018 | Msa0349060:intron | 40.0% | |
| CTACAAAGGAACAGTTTGCA+TGG | + | chr3_1:12268113-12268132 | None:intergenic | 40.0% | |
| ! | GTCTAGCCTTCTAATAGCAA+GGG | + | chr3_1:12268149-12268168 | None:intergenic | 40.0% |
| ! | TGTCTAGCCTTCTAATAGCA+AGG | + | chr3_1:12268150-12268169 | None:intergenic | 40.0% |
| TTGAGTTAAGCTCAACCCAA+TGG | + | chr3_1:12268177-12268196 | None:intergenic | 40.0% | |
| GAGTCTATCCAAGATCTGAT+GGG | + | chr3_1:12268341-12268360 | None:intergenic | 40.0% | |
| AGAGTCTATCCAAGATCTGA+TGG | + | chr3_1:12268342-12268361 | None:intergenic | 40.0% | |
| AGATCTTGGATAGACTCTGA+AGG | - | chr3_1:12268344-12268363 | Msa0349060:intron | 40.0% | |
| !! | CGGTTTTGTAGGGTTTAGTT+AGG | + | chr3_1:12268391-12268410 | None:intergenic | 40.0% |
| !! | CCCTACAAAACCGACTTTTA+AGG | - | chr3_1:12268398-12268417 | Msa0349060:intron | 40.0% |
| ATCTGTTAAGAGACTCGCAT+TGG | + | chr3_1:12268471-12268490 | None:intergenic | 40.0% | |
| ! | CTATGGTTAGTTGGTTGGTT+AGG | - | chr3_1:12268546-12268565 | Msa0349060:intron | 40.0% |
| ! | AGTTGGTTGGTTAGGTAGTT+AGG | - | chr3_1:12268554-12268573 | Msa0349060:intron | 40.0% |
| CACTCTACTATGAGTCTCTA+TGG | - | chr3_1:12268653-12268672 | Msa0349060:intron | 40.0% | |
| GTTAGTAATCATGGAATCCC+AGG | + | chr3_1:12268738-12268757 | None:intergenic | 40.0% | |
| AACAAGGATGAAGCCAATCT+TGG | - | chr3_1:12268779-12268798 | Msa0349060:intron | 40.0% | |
| AACTTAGTGGGAAAAGGCTT+TGG | - | chr3_1:12268820-12268839 | Msa0349060:intron | 40.0% | |
| !!! | GCTTGTTTTGTTGCATTTGC+AGG | + | chr3_1:12269160-12269179 | None:intergenic | 40.0% |
| AATGTTCCATTAGTCCCAGT+TGG | - | chr3_1:12269316-12269335 | Msa0349060:intron | 40.0% | |
| ACAAAACCAACTGGGACTAA+TGG | + | chr3_1:12269325-12269344 | None:intergenic | 40.0% | |
| CAGCTGTTAGAATTCCAAAG+GGG | + | chr3_1:12269418-12269437 | None:intergenic | 40.0% | |
| GCAGCTGTTAGAATTCCAAA+GGG | + | chr3_1:12269419-12269438 | None:intergenic | 40.0% | |
| TGCAGCTGTTAGAATTCCAA+AGG | + | chr3_1:12269420-12269439 | None:intergenic | 40.0% | |
| ATTTGACTCCTACGCTTGTA+TGG | - | chr3_1:12269496-12269515 | Msa0349060:intron | 40.0% | |
| ! | TGAAACTTGCTTTGAGTCCA+CGG | + | chr3_1:12269878-12269897 | None:intergenic | 40.0% |
| ATACATATCAGTGTCGTGTC+TGG | + | chr3_1:12269921-12269940 | None:intergenic | 40.0% | |
| ACCCAAATGTTGCAATTAGG+CGG | + | chr3_1:12270020-12270039 | None:intergenic | 40.0% | |
| GCAACCCAAATGTTGCAATT+AGG | + | chr3_1:12270023-12270042 | None:intergenic | 40.0% | |
| TCCAACACCTTCATTGTGTT+GGG | - | chr3_1:12270056-12270075 | Msa0349060:intron | 40.0% | |
| CTTCATACCCAACACAATGA+AGG | + | chr3_1:12270066-12270085 | None:intergenic | 40.0% | |
| CTTCATTGTGTTGGGTATGA+AGG | - | chr3_1:12270064-12270083 | Msa0349060:intron | 40.0% | |
| GTCATACATCTAGGCTATGT+GGG | + | chr3_1:12270104-12270123 | None:intergenic | 40.0% | |
| ATAGCCTAGATGTATGACCT+GGG | - | chr3_1:12270106-12270125 | Msa0349060:intron | 40.0% | |
| TTTGAACACACTACATGCTC+GGG | + | chr3_1:12270297-12270316 | None:intergenic | 40.0% | |
| GCACAACCCAAATTCAAAGA+TGG | - | chr3_1:12270373-12270392 | Msa0349060:intron | 40.0% | |
| GGAAAGCCATCAACAAATCT+AGG | + | chr3_1:12270410-12270429 | None:intergenic | 40.0% | |
| TACTCATCACCTGACATAGT+TGG | - | chr3_1:12270827-12270846 | Msa0349060:CDS | 40.0% | |
| TGGAAGAGAGCCATTGAAGA+TGG | + | chr3_1:12266620-12266639 | None:intergenic | 45.0% | |
| ! | GATGTGGAAGAGTGTAGGAA+TGG | + | chr3_1:12266640-12266659 | None:intergenic | 45.0% |
| GTGGATATGGTGAGAGGATA+AGG | + | chr3_1:12266758-12266777 | None:intergenic | 45.0% | |
| AAGTCAGTGGATATGGTGAG+AGG | + | chr3_1:12266764-12266783 | None:intergenic | 45.0% | |
| GTGTGGTCCATGCATCTTAA+TGG | - | chr3_1:12267045-12267064 | Msa0349060:intron | 45.0% | |
| ! | TCTGAGGCTGATACAGGTAA+AGG | + | chr3_1:12267217-12267236 | None:intergenic | 45.0% |
| !! | TTAAGCCTGGTTTGGATGCA+CGG | - | chr3_1:12267361-12267380 | Msa0349060:intron | 45.0% |
| TTAATCCGTGCATCCAAACC+AGG | + | chr3_1:12267369-12267388 | None:intergenic | 45.0% | |
| !! | ATTAATAGGGGGAGGCACTT+AGG | - | chr3_1:12268087-12268106 | Msa0349060:intron | 45.0% |
| !! | CACAGTCCCTTGCTATTAGA+AGG | - | chr3_1:12268140-12268159 | Msa0349060:intron | 45.0% |
| AAGGCTAGACAGTCACCATT+GGG | - | chr3_1:12268159-12268178 | Msa0349060:intron | 45.0% | |
| TGTCTAGTCCTAAGCGTGAT+GGG | + | chr3_1:12268291-12268310 | None:intergenic | 45.0% | |
| ATGTCTAGTCCTAAGCGTGA+TGG | + | chr3_1:12268292-12268311 | None:intergenic | 45.0% | |
| GCATTGGACGATATAAGGTC+TGG | + | chr3_1:12268455-12268474 | None:intergenic | 45.0% | |
| GACTCGCATTGGACGATATA+AGG | + | chr3_1:12268460-12268479 | None:intergenic | 45.0% | |
| ATCACTACGACCTTTATCCC+TGG | - | chr3_1:12268717-12268736 | Msa0349060:intron | 45.0% | |
| TCACTACGACCTTTATCCCT+GGG | - | chr3_1:12268718-12268737 | Msa0349060:intron | 45.0% | |
| TCATGGAATCCCAGGGATAA+AGG | + | chr3_1:12268730-12268749 | None:intergenic | 45.0% | |
| CATCCTTGTTGCATGCTAAG+AGG | + | chr3_1:12268769-12268788 | None:intergenic | 45.0% | |
| ACAAGTTTACCCCTATGCTG+CGG | + | chr3_1:12268913-12268932 | None:intergenic | 45.0% | |
| ATGTTGCAATTAGGCGGCTA+GGG | + | chr3_1:12270014-12270033 | None:intergenic | 45.0% | |
| AATGTTGCAATTAGGCGGCT+AGG | + | chr3_1:12270015-12270034 | None:intergenic | 45.0% | |
| AGCCGCCTAATTGCAACATT+TGG | - | chr3_1:12270015-12270034 | Msa0349060:intron | 45.0% | |
| GCCGCCTAATTGCAACATTT+GGG | - | chr3_1:12270016-12270035 | Msa0349060:intron | 45.0% | |
| !! | CAACACAATGAAGGTGTTGG+AGG | + | chr3_1:12270057-12270076 | None:intergenic | 45.0% |
| CTCCAACACCTTCATTGTGT+TGG | - | chr3_1:12270055-12270074 | Msa0349060:intron | 45.0% | |
| ! | ACCCAACACAATGAAGGTGT+TGG | + | chr3_1:12270060-12270079 | None:intergenic | 45.0% |
| GGTCATACATCTAGGCTATG+TGG | + | chr3_1:12270105-12270124 | None:intergenic | 45.0% | |
| CATAGCCTAGATGTATGACC+TGG | - | chr3_1:12270105-12270124 | Msa0349060:intron | 45.0% | |
| CTTACCCAGGTCATACATCT+AGG | + | chr3_1:12270113-12270132 | None:intergenic | 45.0% | |
| CTAGATGTATGACCTGGGTA+AGG | - | chr3_1:12270111-12270130 | Msa0349060:intron | 45.0% | |
| AGTTTAGGCAGCCCTAATTG+TGG | - | chr3_1:12270141-12270160 | Msa0349060:intron | 45.0% | |
| GAAGTGTGGGACCACAATTA+GGG | + | chr3_1:12270155-12270174 | None:intergenic | 45.0% | |
| TGAAGTGTGGGACCACAATT+AGG | + | chr3_1:12270156-12270175 | None:intergenic | 45.0% | |
| TCCCACACTTCAAGCTCATA+GGG | - | chr3_1:12270164-12270183 | Msa0349060:intron | 45.0% | |
| CTAGAGGAGGACCATAATGA+AGG | + | chr3_1:12270221-12270240 | None:intergenic | 45.0% | |
| ATCAACAGTTAGGGAGCTAG+AGG | + | chr3_1:12270237-12270256 | None:intergenic | 45.0% | |
| CTAGCTCCCTAACTGTTGAT+TGG | - | chr3_1:12270237-12270256 | Msa0349060:intron | 45.0% | |
| GGGAAGCCAATCAACAGTTA+GGG | + | chr3_1:12270246-12270265 | None:intergenic | 45.0% | |
| !! | GTCCACGTTTCTAGCTCATA+GGG | - | chr3_1:12270271-12270290 | Msa0349060:intron | 45.0% |
| ATGGTCCTCATCTTACTGGT+CGG | - | chr3_1:12270331-12270350 | Msa0349060:intron | 45.0% | |
| CAAAACCGACCAGTAAGATG+AGG | + | chr3_1:12270339-12270358 | None:intergenic | 45.0% | |
| !! | ATCCACACTTCTGGCTCAAA+GGG | - | chr3_1:12270436-12270455 | Msa0349060:intron | 45.0% |
| TCAAAGGGCCAGAACATGAT+GGG | - | chr3_1:12270451-12270470 | Msa0349060:intron | 45.0% | |
| CAGATTGAAGATGTGTAGCG+AGG | + | chr3_1:12270553-12270572 | None:intergenic | 45.0% | |
| GAAGAGGGAGAAACAGAGAG+AGG | + | chr3_1:12266707-12266726 | None:intergenic | 50.0% | |
| GATTTCTACGCGACATGGTG+TGG | - | chr3_1:12267028-12267047 | Msa0349060:intron | 50.0% | |
| CTCCCATACAGTGAGACAAG+TGG | - | chr3_1:12267472-12267491 | Msa0349060:intron | 50.0% | |
| GAAGGCTAGACAGTCACCAT+TGG | - | chr3_1:12268158-12268177 | Msa0349060:intron | 50.0% | |
| GTCTAGTCCTAAGCGTGATG+GGG | + | chr3_1:12268290-12268309 | None:intergenic | 50.0% | |
| AAGCGTAACATGACTGCGAG+TGG | - | chr3_1:12268315-12268334 | Msa0349060:intron | 50.0% | |
| CAGCCTCTTAGCATGCAACA+AGG | - | chr3_1:12268763-12268782 | Msa0349060:intron | 50.0% | |
| !! | AGAGTCGGGTTTGCTGTTCT+AGG | - | chr3_1:12269102-12269121 | Msa0349060:intron | 50.0% |
| TGAATTTGCACGCGACATGC+AGG | - | chr3_1:12269710-12269729 | Msa0349060:intron | 50.0% | |
| TGTTGCAATTAGGCGGCTAG+GGG | + | chr3_1:12270013-12270032 | None:intergenic | 50.0% | |
| GTCCCACACTTCAAGCTCAT+AGG | - | chr3_1:12270163-12270182 | Msa0349060:intron | 50.0% | |
| GCCCTATGAGCTTGAAGTGT+GGG | + | chr3_1:12270168-12270187 | None:intergenic | 50.0% | |
| AACAGTTAGGGAGCTAGAGG+AGG | + | chr3_1:12270234-12270253 | None:intergenic | 50.0% | |
| CGGGAAGCCAATCAACAGTT+AGG | + | chr3_1:12270247-12270266 | None:intergenic | 50.0% | |
| AGCTAGAAACGTGGACGATG+CGG | + | chr3_1:12270267-12270286 | None:intergenic | 50.0% | |
| !! | CGTCCACGTTTCTAGCTCAT+AGG | - | chr3_1:12270270-12270289 | Msa0349060:intron | 50.0% |
| ! | AGCCAGAAGTGTGGATGATG+CGG | + | chr3_1:12270432-12270451 | None:intergenic | 50.0% |
| !! | CATCCACACTTCTGGCTCAA+AGG | - | chr3_1:12270435-12270454 | Msa0349060:intron | 50.0% |
| CTCAAAGGGCCAGAACATGA+TGG | - | chr3_1:12270450-12270469 | Msa0349060:intron | 50.0% | |
| CAAAGGGCCAGAACATGATG+GGG | - | chr3_1:12270452-12270471 | Msa0349060:intron | 50.0% | |
| CCAAACACCCCATCATGTTC+TGG | + | chr3_1:12270462-12270481 | None:intergenic | 50.0% | |
| ! | CCAGAACATGATGGGGTGTT+TGG | - | chr3_1:12270459-12270478 | Msa0349060:intron | 50.0% |
| CTAGAGGAGGACCACAATGA+AGG | + | chr3_1:12270493-12270512 | None:intergenic | 50.0% | |
| ACGCAAATGCTGCAACTAGG+CGG | + | chr3_1:12270516-12270535 | None:intergenic | 50.0% | |
| GCAACGCAAATGCTGCAACT+AGG | + | chr3_1:12270519-12270538 | None:intergenic | 50.0% | |
| ! | TAGTCCTAAGCGTGATGGGG+AGG | + | chr3_1:12268287-12268306 | None:intergenic | 55.0% |
| AGACGCTTGACCGCAGCATA+GGG | - | chr3_1:12268900-12268919 | Msa0349060:intron | 55.0% | |
| TTGCAATTAGGCGGCTAGGG+GGG | + | chr3_1:12270011-12270030 | None:intergenic | 55.0% | |
| GTTGCAATTAGGCGGCTAGG+GGG | + | chr3_1:12270012-12270031 | None:intergenic | 55.0% | |
| ! | GGTGTTGGAGGCTGCAATGA+AGG | + | chr3_1:12270045-12270064 | None:intergenic | 55.0% |
| GGCCCTATGAGCTTGAAGTG+TGG | + | chr3_1:12270169-12270188 | None:intergenic | 55.0% | |
| TCCAACACACCCCACATGCT+CGG | + | chr3_1:12270191-12270210 | None:intergenic | 55.0% | |
| GCTAGAAACGTGGACGATGC+GGG | + | chr3_1:12270266-12270285 | None:intergenic | 55.0% | |
| GGCCCTATGAGCTAGAAACG+TGG | + | chr3_1:12270276-12270295 | None:intergenic | 55.0% | |
| TCCCGCATCATCCACACTTC+TGG | - | chr3_1:12270427-12270446 | Msa0349060:intron | 55.0% | |
| ! | GCCAGAAGTGTGGATGATGC+GGG | + | chr3_1:12270431-12270450 | None:intergenic | 55.0% |
| GTGTAGCGAGGCTGCAATGA+AGG | + | chr3_1:12270541-12270560 | None:intergenic | 55.0% | |
| CGTACCTCCCCATCACGCTT+AGG | - | chr3_1:12268280-12268299 | Msa0349060:intron | 60.0% | |
| GCGAGTGGCCCATCAGATCT+TGG | - | chr3_1:12268330-12268349 | Msa0349060:intron | 60.0% | |
| CAGACGCTTGACCGCAGCAT+AGG | - | chr3_1:12268899-12268918 | Msa0349060:intron | 60.0% | |
| GACGCTTGACCGCAGCATAG+GGG | - | chr3_1:12268901-12268920 | Msa0349060:intron | 60.0% | |
| CTCATAGGGCCCGAGCATGT+GGG | - | chr3_1:12270178-12270197 | Msa0349060:intron | 60.0% | |
| TCATAGGGCCCGAGCATGTG+GGG | - | chr3_1:12270179-12270198 | Msa0349060:intron | 60.0% | |
| CCAACACACCCCACATGCTC+GGG | + | chr3_1:12270190-12270209 | None:intergenic | 60.0% | |
| GGCCCTTTGAGCCAGAAGTG+TGG | + | chr3_1:12270441-12270460 | None:intergenic | 60.0% | |
| TGCAACTAGGCGGCTAGAGG+AGG | + | chr3_1:12270506-12270525 | None:intergenic | 60.0% | |
| TGCTGCAACTAGGCGGCTAG+AGG | + | chr3_1:12270509-12270528 | None:intergenic | 60.0% | |
| AGGGGGGATTGCAGCGAAGG+AGG | + | chr3_1:12269995-12270014 | None:intergenic | 65.0% | |
| GCTAGGGGGGATTGCAGCGA+AGG | + | chr3_1:12269998-12270017 | None:intergenic | 65.0% | |
| GCTCATAGGGCCCGAGCATG+TGG | - | chr3_1:12270177-12270196 | Msa0349060:intron | 65.0% | |
| CCCGAGCATGTGGGGTGTGT+TGG | - | chr3_1:12270187-12270206 | Msa0349060:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 12266566 | 12271063 | 12266566 | ID=Msa0349060;Name=Msa0349060 |
| chr3_1 | mRNA | 12266566 | 12271063 | 12266566 | ID=Msa0349060-mRNA-1;Parent=Msa0349060;Name=Msa0349060-mRNA-1;_AED=0.12;_eAED=0.12;_QI=60|1|1|1|1|1|4|249|180 |
| chr3_1 | exon | 12266566 | 12266931 | 12266566 | ID=Msa0349060-mRNA-1:exon:3192;Parent=Msa0349060-mRNA-1 |
| chr3_1 | exon | 12267898 | 12267978 | 12267898 | ID=Msa0349060-mRNA-1:exon:3191;Parent=Msa0349060-mRNA-1 |
| chr3_1 | exon | 12270545 | 12270667 | 12270545 | ID=Msa0349060-mRNA-1:exon:3190;Parent=Msa0349060-mRNA-1 |
| chr3_1 | exon | 12270782 | 12271063 | 12270782 | ID=Msa0349060-mRNA-1:exon:3189;Parent=Msa0349060-mRNA-1 |
| chr3_1 | five_prime_UTR | 12271004 | 12271063 | 12271004 | ID=Msa0349060-mRNA-1:five_prime_utr;Parent=Msa0349060-mRNA-1 |
| chr3_1 | CDS | 12270782 | 12271003 | 12270782 | ID=Msa0349060-mRNA-1:cds;Parent=Msa0349060-mRNA-1 |
| chr3_1 | CDS | 12270545 | 12270667 | 12270545 | ID=Msa0349060-mRNA-1:cds;Parent=Msa0349060-mRNA-1 |
| chr3_1 | CDS | 12267898 | 12267978 | 12267898 | ID=Msa0349060-mRNA-1:cds;Parent=Msa0349060-mRNA-1 |
| chr3_1 | CDS | 12266815 | 12266931 | 12266815 | ID=Msa0349060-mRNA-1:cds;Parent=Msa0349060-mRNA-1 |
| chr3_1 | three_prime_UTR | 12266566 | 12266814 | 12266566 | ID=Msa0349060-mRNA-1:three_prime_utr;Parent=Msa0349060-mRNA-1 |
| Gene Sequence |
| Protein sequence |
