Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0506620 | XP_003600574.1 | 96.637 | 446 | 10 | 3 | 1 | 445 | 1 | 442 | 0.0 | 858 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0506620 | G7IV74 | 96.637 | 446 | 10 | 3 | 1 | 445 | 1 | 442 | 0.0 | 858 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0038350 | Msa0506620 | 0.804831 | 1.788644e-49 | -8.615850e-47 |
| Msa0092660 | Msa0506620 | -0.800521 | 1.386220e-48 | -8.615850e-47 |
| Msa0137600 | Msa0506620 | -0.800905 | 1.157329e-48 | -8.615850e-47 |
| Msa0207000 | Msa0506620 | -0.801012 | 1.100485e-48 | -8.615850e-47 |
| Msa0367290 | Msa0506620 | 0.842011 | 3.354345e-58 | -8.615850e-47 |
| Msa0380310 | Msa0506620 | -0.800249 | 1.574831e-48 | -8.615850e-47 |
| Msa0423360 | Msa0506620 | 0.811390 | 7.170891e-51 | -8.615850e-47 |
| Msa0459910 | Msa0506620 | 0.866426 | 2.876802e-65 | -8.615850e-47 |
| Msa0246690 | Msa0506620 | -0.813807 | 2.122895e-51 | -8.615850e-47 |
| Msa0317260 | Msa0506620 | -0.800957 | 1.129181e-48 | -8.615850e-47 |
| Msa0342200 | Msa0506620 | -0.801585 | 8.399865e-49 | -8.615850e-47 |
| Msa0344070 | Msa0506620 | -0.803590 | 3.242544e-49 | -8.615850e-47 |
| Msa0352510 | Msa0506620 | -0.801373 | 9.282740e-49 | -8.615850e-47 |
| Msa0506620 | Msa0526640 | 0.812399 | 4.323832e-51 | -8.615850e-47 |
| Msa0506620 | Msa0681890 | -0.800902 | 1.159204e-48 | -8.615850e-47 |
| Msa0506620 | Msa0694690 | 0.805047 | 1.611533e-49 | -8.615850e-47 |
| Msa0506620 | Msa0707780 | -0.808765 | 2.637308e-50 | -8.615850e-47 |
| Msa0506620 | Msa0730180 | -0.821160 | 4.679576e-53 | -8.615850e-47 |
| Msa0506620 | Msa0746600 | -0.803070 | 4.153873e-49 | -8.615850e-47 |
| Msa0506620 | Msa0770430 | -0.805640 | 1.210791e-49 | -8.615850e-47 |
| Msa0506620 | Msa1028460 | -0.802658 | 5.053200e-49 | -8.615850e-47 |
| Msa0506620 | Msa1159100 | -0.803556 | 3.295326e-49 | -8.615850e-47 |
| Msa0506620 | Msa1171000 | 0.885015 | 1.169617e-71 | -8.615850e-47 |
| Msa0506620 | Msa1183390 | -0.817883 | 2.616726e-52 | -8.615850e-47 |
| Msa0506620 | Msa1271510 | -0.815878 | 7.378069e-52 | -8.615850e-47 |
| Msa0506620 | Msa1280120 | -0.800887 | 1.166963e-48 | -8.615850e-47 |
| Msa0506620 | Msa1309360 | -0.805299 | 1.427245e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0506620 | MtrunA17_Chr3g0108551 | 96.637 | 446 | 10 | 3 | 1 | 445 | 1 | 442 | 0.0 | 858 |
| Msa0506620 | MtrunA17_Chr7g0245331 | 47.884 | 378 | 166 | 10 | 1 | 373 | 1 | 352 | 2.67e-93 | 287 |
| Msa0506620 | MtrunA17_Chr8g0334431 | 58.791 | 182 | 61 | 4 | 213 | 380 | 132 | 313 | 4.07e-58 | 194 |
| Msa0506620 | MtrunA17_Chr7g0259821 | 34.263 | 251 | 131 | 5 | 147 | 378 | 53 | 288 | 2.69e-30 | 119 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0506620 | AT2G30530.1 | 59.627 | 322 | 98 | 8 | 52 | 371 | 57 | 348 | 2.31e-98 | 300 |
| Msa0506620 | AT5G01970.1 | 55.363 | 289 | 111 | 4 | 87 | 371 | 35 | 309 | 4.59e-95 | 290 |
| Msa0506620 | AT5G01970.2 | 64.623 | 212 | 70 | 3 | 164 | 371 | 2 | 212 | 4.13e-84 | 259 |
| Msa0506620 | AT1G30050.1 | 46.011 | 376 | 126 | 10 | 1 | 370 | 1 | 305 | 7.20e-82 | 258 |
| Msa0506620 | AT4G02800.1 | 36.098 | 205 | 119 | 2 | 161 | 355 | 79 | 281 | 2.40e-32 | 125 |
Find 135 sgRNAs with CRISPR-Local
Find 487 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTCTAAGTGATTCGAATTT+TGG | 0.069894 | 3_4:-53288225 | None:intergenic |
| TCTTCGCTTTCGTCACTTTA+TGG | 0.128625 | 3_4:+53285771 | Msa0506620:CDS |
| CTTTATATCCTTTCCTGATA+TGG | 0.141349 | 3_4:-53292202 | None:intergenic |
| CTCCTTGCGTTGGCGACATC+TGG | 0.173544 | 3_4:-53288695 | None:intergenic |
| GTCCCAGGTATTTCAGATTC+TGG | 0.193774 | 3_4:-53287578 | None:intergenic |
| GCGACATCTGGGACCGCAAC+TGG | 0.216020 | 3_4:-53288683 | None:intergenic |
| AATTCAACCTCCTCGAATTC+TGG | 0.234711 | 3_4:-53285558 | None:intergenic |
| ATGAGCCCAAGAGTGGATTT+TGG | 0.240487 | 3_4:+53287504 | Msa0506620:CDS |
| GGACAGTCCGACAATTATTA+AGG | 0.278402 | 3_4:+53288264 | Msa0506620:CDS |
| GAAGAAGACGGTGTAATAAT+TGG | 0.289785 | 3_4:-53285666 | None:intergenic |
| CCAAAGCAAAACTGCTTCTT+CGG | 0.293791 | 3_4:+53289953 | Msa0506620:CDS |
| GACGGTGTAATAATTGGATT+AGG | 0.303446 | 3_4:-53285660 | None:intergenic |
| TGGCACCATTGGTAAATCTT+TGG | 0.322461 | 3_4:+53288324 | Msa0506620:CDS |
| GGCATTTCATCTCCCATATC+AGG | 0.332511 | 3_4:+53292189 | Msa0506620:CDS |
| TGGCATCTGAAGACATTGAT+AGG | 0.340914 | 3_4:-53292137 | None:intergenic |
| TGGTGAGTGGTGGCTCGATT+TGG | 0.343473 | 3_4:-53285460 | None:intergenic |
| TTAGAATCGAGGGGCATAAT+AGG | 0.343574 | 3_4:-53292096 | None:intergenic |
| TTTATATCCTTTCCTGATAT+GGG | 0.343848 | 3_4:-53292201 | None:intergenic |
| ACCGTCACCGACGAAGATTC+TGG | 0.367346 | 3_4:+53285482 | Msa0506620:five_prime_UTR |
| TTCTGATCCCATGCCAAGAT+TGG | 0.373653 | 3_4:-53292157 | None:intergenic |
| TAGCCAAGATGATGATGATT+TGG | 0.376397 | 3_4:+53290077 | Msa0506620:CDS |
| GGTGAGTGGTGGCTCGATTT+GGG | 0.378025 | 3_4:-53285459 | None:intergenic |
| CGTTGACACTTCTTCAACTT+CGG | 0.385273 | 3_4:+53285701 | Msa0506620:CDS |
| AGGAAACCCGTAAACATATC+AGG | 0.396756 | 3_4:+53288595 | Msa0506620:CDS |
| CGACATCTGGGACCGCAACT+GGG | 0.398383 | 3_4:-53288682 | None:intergenic |
| CCAAAATTCGAATCACTTAG+AGG | 0.398799 | 3_4:+53288225 | Msa0506620:CDS |
| GAAGACTGTCAAGGCTGATC+TGG | 0.400598 | 3_4:+53289981 | Msa0506620:CDS |
| TAAAGCTATTAGAGCTTCTT+CGG | 0.429020 | 3_4:+53285737 | Msa0506620:CDS |
| CAAAGCAAAACTGCTTCTTC+GGG | 0.430445 | 3_4:+53289954 | Msa0506620:CDS |
| TCCAGAATCTTCGTCGGTGA+CGG | 0.436466 | 3_4:-53285483 | None:intergenic |
| AACGCCCCAAAATCCACTCT+TGG | 0.436480 | 3_4:-53287510 | None:intergenic |
| TAGGACTTCAGATATCATTC+AGG | 0.441846 | 3_4:+53288575 | Msa0506620:CDS |
| GACAGTCCGACAATTATTAA+GGG | 0.445266 | 3_4:+53288265 | Msa0506620:CDS |
| TCCTTGCGTTGGCGACATCT+GGG | 0.451239 | 3_4:-53288694 | None:intergenic |
| ACGGTGTAATAATTGGATTA+GGG | 0.453368 | 3_4:-53285659 | None:intergenic |
| ACATCTTCTCTTACTCATAT+CGG | 0.454109 | 3_4:+53288301 | Msa0506620:CDS |
| TGCATTTAGTGCTTGTCAAA+CGG | 0.454393 | 3_4:+53292547 | Msa0506620:three_prime_UTR |
| TAGAGGAGGGCAATCTCAAA+AGG | 0.454947 | 3_4:+53288242 | Msa0506620:CDS |
| TCTAATCCCTTAATAATTGT+CGG | 0.472952 | 3_4:-53288271 | None:intergenic |
| AAGAGCATCTCTTCTATAGC+TGG | 0.472982 | 3_4:+53292267 | Msa0506620:CDS |
| CTCCCCTTTCGCGATTTACA+CGG | 0.478421 | 3_4:-53290053 | None:intergenic |
| ATGTCTTCAGATGCCAATCT+TGG | 0.479100 | 3_4:+53292144 | Msa0506620:CDS |
| GAACTTTGTAGGACAGAGTC+AGG | 0.482745 | 3_4:+53288629 | Msa0506620:CDS |
| GTTCTTGCAACGTTGTAGAA+TGG | 0.485883 | 3_4:-53288659 | None:intergenic |
| TTTCCCCTTGATGTTACGCC+AGG | 0.486371 | 3_4:-53287617 | None:intergenic |
| AATATCCTGGCGTAACATCA+AGG | 0.490768 | 3_4:+53287612 | Msa0506620:CDS |
| ACTCATATCGGTGGCACCAT+TGG | 0.490889 | 3_4:+53288313 | Msa0506620:CDS |
| ATACCAAATCATCATCATCT+TGG | 0.501866 | 3_4:-53290080 | None:intergenic |
| TCGAGGGGCATAATAGGCAC+TGG | 0.503893 | 3_4:-53292090 | None:intergenic |
| TATTGTGACCTTGTTGTCCC+AGG | 0.505682 | 3_4:-53287593 | None:intergenic |
| CGAGGGGCATAATAGGCACT+GGG | 0.508411 | 3_4:-53292089 | None:intergenic |
| TTTGGGATCCGATCATGAAC+CGG | 0.510340 | 3_4:-53285442 | None:intergenic |
| CAAAACCGCGCTGAGCGTTA+CGG | 0.510897 | 3_4:+53285511 | Msa0506620:five_prime_UTR |
| GTTGCGATAACCGTTTCGAT+TGG | 0.512341 | 3_4:+53285533 | Msa0506620:five_prime_UTR |
| ACGCCCCAAAATCCACTCTT+GGG | 0.513772 | 3_4:-53287509 | None:intergenic |
| CACCATTGGTAAATCTTTGG+AGG | 0.517755 | 3_4:+53288327 | Msa0506620:CDS |
| CCGTCTTCTTCGAGTAATGA+TGG | 0.518729 | 3_4:+53285678 | Msa0506620:CDS |
| GATGGAGGAGCAGTAGGAGT+AGG | 0.521685 | 3_4:-53285825 | None:intergenic |
| GTGAAGAACTCTGATGCGAC+CGG | 0.523618 | 3_4:-53285392 | None:intergenic |
| CTGAAATACCTGGGACAACA+AGG | 0.524496 | 3_4:+53287585 | Msa0506620:CDS |
| TTGGAGGATGGAGGAGCAGT+AGG | 0.525146 | 3_4:-53285831 | None:intergenic |
| TACTGCTCCTCCATCCTCCA+AGG | 0.525395 | 3_4:+53285833 | Msa0506620:CDS |
| CAGAGAGAGACCTTGGAGGA+TGG | 0.525442 | 3_4:-53285843 | None:intergenic |
| TCTAGCTGAGAAAGCTCGCT+TGG | 0.528045 | 3_4:+53291927 | Msa0506620:CDS |
| CCTCCGTGTAAATCGCGAAA+GGG | 0.528321 | 3_4:+53290050 | Msa0506620:CDS |
| ATATAAATAACAGATCATAA+AGG | 0.529068 | 3_4:-53292340 | None:intergenic |
| TTCAGATGCCAATCTTGGCA+TGG | 0.533283 | 3_4:+53292149 | Msa0506620:CDS |
| TATTCACACCGGTTCATGAT+CGG | 0.537139 | 3_4:+53285434 | Msa0506620:five_prime_UTR |
| TCCCAGATGTCGCCAACGCA+AGG | 0.538434 | 3_4:+53288693 | Msa0506620:CDS |
| GATTTCGTTGCAGGTTGCAA+TGG | 0.540974 | 3_4:+53289921 | Msa0506620:intron |
| CATCTCTTCTATAGCTGGAA+AGG | 0.547815 | 3_4:+53292272 | Msa0506620:CDS |
| AGTTCTTGATCTCCTTGCGT+TGG | 0.549331 | 3_4:-53288705 | None:intergenic |
| CTCTGTCCTACAAAGTTCCC+AGG | 0.551784 | 3_4:-53288624 | None:intergenic |
| ACACCAGAATCTGAAATACC+TGG | 0.553757 | 3_4:+53287575 | Msa0506620:CDS |
| ATATCATCAACTTACGATGC+AGG | 0.555351 | 3_4:+53292005 | Msa0506620:CDS |
| TCAGATGCCAATCTTGGCAT+GGG | 0.561084 | 3_4:+53292150 | Msa0506620:CDS |
| ATATCCTGGCGTAACATCAA+GGG | 0.567253 | 3_4:+53287613 | Msa0506620:CDS |
| TCGATTGGATCCAGAATTCG+AGG | 0.568019 | 3_4:+53285548 | Msa0506620:five_prime_UTR |
| GCGTATAGAAGGAGACAATA+CGG | 0.571739 | 3_4:+53285588 | Msa0506620:CDS |
| GATTCTTCCAGAATCTTCGT+CGG | 0.572050 | 3_4:-53285489 | None:intergenic |
| GGCTGATCTGGCATTTGCAA+AGG | 0.572702 | 3_4:+53289993 | Msa0506620:CDS |
| GAGTTCTGAGGTGATTGTAA+AGG | 0.573419 | 3_4:+53292224 | Msa0506620:CDS |
| GGCATCTGAAGACATTGATA+GGG | 0.575152 | 3_4:-53292136 | None:intergenic |
| AAAACAGAGAGAGACCTTGG+AGG | 0.577477 | 3_4:-53285847 | None:intergenic |
| ACAACAAGGTCACAATATCC+TGG | 0.578035 | 3_4:+53287599 | Msa0506620:CDS |
| CTCGTGAGAATCGCTTTCTG+AGG | 0.578990 | 3_4:+53291971 | Msa0506620:CDS |
| TGAGAATCGCTTTCTGAGGG+AGG | 0.579459 | 3_4:+53291975 | Msa0506620:CDS |
| GTTGCAGGTTGCAATGGCAA+TGG | 0.581158 | 3_4:+53289927 | Msa0506620:intron |
| TTCATCTCCCATATCAGGAA+AGG | 0.581530 | 3_4:+53292194 | Msa0506620:CDS |
| AGAGGAGGGCAATCTCAAAA+GGG | 0.582424 | 3_4:+53288243 | Msa0506620:CDS |
| TCGGGAGTTGAAGACTGTCA+AGG | 0.584666 | 3_4:+53289972 | Msa0506620:CDS |
| GACATCTGGGACCGCAACTG+GGG | 0.584957 | 3_4:-53288681 | None:intergenic |
| TGAAGAACTCTGATGCGACC+GGG | 0.585556 | 3_4:-53285391 | None:intergenic |
| TCTTCTATAGCTGGAAAGGA+CGG | 0.587921 | 3_4:+53292276 | Msa0506620:CDS |
| CTCCGTGTAAATCGCGAAAG+GGG | 0.587932 | 3_4:+53290051 | Msa0506620:CDS |
| TGAAGACATTGATAGGGATG+TGG | 0.588765 | 3_4:-53292130 | None:intergenic |
| AGACGGAGTATTAGAATCGA+GGG | 0.589106 | 3_4:-53292106 | None:intergenic |
| AGATCAAGAACTTCAGCTGA+AGG | 0.589254 | 3_4:+53288716 | Msa0506620:CDS |
| ACTGACGCTTCAGTGTATCA+TGG | 0.591502 | 3_4:-53292501 | None:intergenic |
| GCTTCGTCTTCGAAAAGCGA+AGG | 0.592367 | 3_4:-53285627 | None:intergenic |
| AATTCGAATCACTTAGAGGA+GGG | 0.593525 | 3_4:+53288229 | Msa0506620:CDS |
| TCCTCCGTGTAAATCGCGAA+AGG | 0.600826 | 3_4:+53290049 | Msa0506620:CDS |
| AGAATCTTCGTCGGTGACGG+TGG | 0.601747 | 3_4:-53285480 | None:intergenic |
| TGGCGTAACATCAAGGGGAA+AGG | 0.601994 | 3_4:+53287619 | Msa0506620:CDS |
| ATATTGCGTAACTAAAAGAA+CGG | 0.604063 | 3_4:+53292417 | Msa0506620:three_prime_UTR |
| TCGTGAGAATCGCTTTCTGA+GGG | 0.604235 | 3_4:+53291972 | Msa0506620:CDS |
| AATTCTGGATCCAATCGAAA+CGG | 0.606576 | 3_4:-53285543 | None:intergenic |
| GAAAGCAAAATCAATCATTG+AGG | 0.606900 | 3_4:+53287541 | Msa0506620:CDS |
| CACCAGAATCTGAAATACCT+GGG | 0.610375 | 3_4:+53287576 | Msa0506620:CDS |
| AGAGAGACCTTGGAGGATGG+AGG | 0.619651 | 3_4:-53285840 | None:intergenic |
| TGAAAATTGATTATTCACAC+CGG | 0.624163 | 3_4:+53285423 | Msa0506620:five_prime_UTR |
| AAATTGAATGAGCCCAAGAG+TGG | 0.624865 | 3_4:+53287497 | Msa0506620:CDS |
| ATTGATAGGGATGTGGCAGA+CGG | 0.626543 | 3_4:-53292123 | None:intergenic |
| TCGTCGGTGACGGTGGTGAG+TGG | 0.633571 | 3_4:-53285473 | None:intergenic |
| GGATCGATGTGCTCAACTAG+AGG | 0.635385 | 3_4:+53290014 | Msa0506620:CDS |
| CCCTTTCGCGATTTACACGG+AGG | 0.635650 | 3_4:-53290050 | None:intergenic |
| TCGGTGACGGTGGTGAGTGG+TGG | 0.636276 | 3_4:-53285470 | None:intergenic |
| TATCCTGGCGTAACATCAAG+GGG | 0.637290 | 3_4:+53287614 | Msa0506620:CDS |
| CGTTGCAAGAACCCCAGTTG+CGG | 0.640459 | 3_4:+53288670 | Msa0506620:CDS |
| AAAGGATATAAAGAGTTCTG+AGG | 0.642104 | 3_4:+53292212 | Msa0506620:CDS |
| CAGACGGAGTATTAGAATCG+AGG | 0.646425 | 3_4:-53292107 | None:intergenic |
| TTGATGTGATGTAATAAACC+CGG | 0.651997 | 3_4:+53285373 | None:intergenic |
| CACCTCCAAAGATTTACCAA+TGG | 0.660310 | 3_4:-53288329 | None:intergenic |
| GTAGGAGTAGGTTGAGACCG+CGG | 0.663912 | 3_4:-53285813 | None:intergenic |
| AAATTCGAATCACTTAGAGG+AGG | 0.665089 | 3_4:+53288228 | Msa0506620:CDS |
| TCTTCTCTTACTCATATCGG+TGG | 0.669381 | 3_4:+53288304 | Msa0506620:CDS |
| ATGGGATCAGAATTAACAAG+AGG | 0.670588 | 3_4:+53292168 | Msa0506620:CDS |
| CCATCATTACTCGAAGAAGA+CGG | 0.678461 | 3_4:-53285678 | None:intergenic |
| CGCAACCGTAACGCTCAGCG+CGG | 0.679754 | 3_4:-53285516 | None:intergenic |
| ACTCTAATCTCTCTTCTCCG+CGG | 0.708525 | 3_4:+53285796 | Msa0506620:CDS |
| GACGGAGTATTAGAATCGAG+GGG | 0.708812 | 3_4:-53292105 | None:intergenic |
| ATTGGATCCAGAATTCGAGG+AGG | 0.717949 | 3_4:+53285551 | Msa0506620:five_prime_UTR |
| AGGGGCATAATAGGCACTGG+GGG | 0.728448 | 3_4:-53292087 | None:intergenic |
| GTACTTAGACGAGAGCAATG+AGG | 0.740298 | 3_4:+53292035 | Msa0506620:CDS |
| GAGGGGCATAATAGGCACTG+GGG | 0.777820 | 3_4:-53292088 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATATAGTTTTTTTAAAGA+TGG | + | chr3_4:53286016-53286035 | Msa0506620:intron | 10.0% |
| !!! | TGAATAATCAATTTTCAATA+GGG | - | chr3_4:53285420-53285439 | None:intergenic | 15.0% |
| !!! | ATCAAGTACTATTTTTTTAA+TGG | - | chr3_4:53286276-53286295 | None:intergenic | 15.0% |
| !! | TAAACAAAAAAGATAAAGTA+AGG | - | chr3_4:53287049-53287068 | None:intergenic | 15.0% |
| !! | ATCAATAATTAAATAAAGCT+GGG | - | chr3_4:53287150-53287169 | None:intergenic | 15.0% |
| !! | ATCAATAATTAAATAAAGCT+GGG | - | chr3_4:53287150-53287169 | None:intergenic | 15.0% |
| !! | ATATCAAATAAAAAGAAAGA+AGG | + | chr3_4:53287933-53287952 | Msa0506620:intron | 15.0% |
| !! | ATAAGTAAAAAACTTATAAG+TGG | - | chr3_4:53288374-53288393 | None:intergenic | 15.0% |
| !!! | TTTTAAAAACAAACAACATA+GGG | - | chr3_4:53288840-53288859 | None:intergenic | 15.0% |
| !!! | ATTTTAAAAACAAACAACAT+AGG | - | chr3_4:53288841-53288860 | None:intergenic | 15.0% |
| !! | AAGACAAAGAATAAAAATAA+TGG | - | chr3_4:53289257-53289276 | None:intergenic | 15.0% |
| !!! | CAAATGTTATTTGTAATTTT+AGG | - | chr3_4:53289287-53289306 | None:intergenic | 15.0% |
| !!! | TAATTACAAAATACCTTTTT+TGG | + | chr3_4:53290298-53290317 | Msa0506620:intron | 15.0% |
| !!! | AAATGAAATTTTAGATTAAG+GGG | - | chr3_4:53291462-53291481 | None:intergenic | 15.0% |
| !!! | CAAATGAAATTTTAGATTAA+GGG | - | chr3_4:53291463-53291482 | None:intergenic | 15.0% |
| !! | TTAGTTAAACACATATTATA+TGG | + | chr3_4:53291522-53291541 | Msa0506620:intron | 15.0% |
| !! | CATTAAAATACAGAAAATTT+AGG | - | chr3_4:53291866-53291885 | None:intergenic | 15.0% |
| !! | ATATAAATAACAGATCATAA+AGG | - | chr3_4:53292343-53292362 | None:intergenic | 15.0% |
| !!! | GTGAATAATCAATTTTCAAT+AGG | - | chr3_4:53285421-53285440 | None:intergenic | 20.0% |
| !!! | CATTTTTCCAAGTTTTTTTT+TGG | - | chr3_4:53286482-53286501 | None:intergenic | 20.0% |
| !! | CAAAAAAAAACTTGGAAAAA+TGG | + | chr3_4:53286480-53286499 | Msa0506620:intron | 20.0% |
| !! | GAAAAATGGAAAACTATTTA+CGG | + | chr3_4:53286494-53286513 | Msa0506620:intron | 20.0% |
| !! | AAAAATGGAAAACTATTTAC+GGG | + | chr3_4:53286495-53286514 | Msa0506620:intron | 20.0% |
| !!! | ACATACTTAAAAGAACTTTT+TGG | - | chr3_4:53286794-53286813 | None:intergenic | 20.0% |
| !! | CATCAATAATTAAATAAAGC+TGG | - | chr3_4:53287127-53287146 | None:intergenic | 20.0% |
| !! | CATCAATAATTAAATAAAGC+TGG | - | chr3_4:53287127-53287146 | None:intergenic | 20.0% |
| !!! | ATTTTGCATTACAACAAATT+TGG | - | chr3_4:53287215-53287234 | None:intergenic | 20.0% |
| !!! | AGATCTATTTGTTACAATTA+TGG | + | chr3_4:53287252-53287271 | Msa0506620:intron | 20.0% |
| !!! | CTTTTTCTGCAAAAATATTT+TGG | + | chr3_4:53287703-53287722 | Msa0506620:intron | 20.0% |
| !!! | AATATTTTGGTAACATAATG+TGG | + | chr3_4:53287716-53287735 | Msa0506620:intron | 20.0% |
| !! | TTGTATAGATTAGAATGTTA+AGG | + | chr3_4:53287856-53287875 | Msa0506620:intron | 20.0% |
| !!! | TATCAGTTTTAGATTAGAAA+TGG | + | chr3_4:53288044-53288063 | Msa0506620:intron | 20.0% |
| !!! | TTATTTTTGAACCATGAAAT+TGG | + | chr3_4:53288176-53288195 | Msa0506620:intron | 20.0% |
| !! | AAGAATTGTGATACTATTAA+AGG | + | chr3_4:53288961-53288980 | Msa0506620:intron | 20.0% |
| !! | ATTTGCTTCATAGAATAAAT+CGG | - | chr3_4:53289047-53289066 | None:intergenic | 20.0% |
| !! | TTAATATATGGTATTTCAAG+AGG | - | chr3_4:53289145-53289164 | None:intergenic | 20.0% |
| !! | AAACACAGATCTTTAATATA+TGG | - | chr3_4:53289157-53289176 | None:intergenic | 20.0% |
| !!! | GTTTTAAACATACATCAATA+TGG | - | chr3_4:53289207-53289226 | None:intergenic | 20.0% |
| !!! | ATATATTTTTGCTTTAGATG+AGG | - | chr3_4:53289389-53289408 | None:intergenic | 20.0% |
| !!! | TAATTTTTGACACAAGTAAT+CGG | + | chr3_4:53289411-53289430 | Msa0506620:intron | 20.0% |
| !! | AGATATTTACAGATGATTAT+AGG | - | chr3_4:53289548-53289567 | None:intergenic | 20.0% |
| !!! | AATAATTTGGTGTTAGTTTT+AGG | + | chr3_4:53289657-53289676 | Msa0506620:intron | 20.0% |
| !! | AAGTACTATATATCCAAAAA+AGG | - | chr3_4:53290314-53290333 | None:intergenic | 20.0% |
| !! | ATGATTGTTGTCTATTAAAT+TGG | + | chr3_4:53290566-53290585 | Msa0506620:intron | 20.0% |
| !!! | GTCAAAATAACATGATTTTT+TGG | - | chr3_4:53290808-53290827 | None:intergenic | 20.0% |
| !! | ATACATAAAGCAGTAAATTA+TGG | - | chr3_4:53290877-53290896 | None:intergenic | 20.0% |
| !! | GAAAACAAGAAAAATGAAAA+TGG | + | chr3_4:53290904-53290923 | Msa0506620:intron | 20.0% |
| !! | AATTGAACTCTGAATATTTA+AGG | - | chr3_4:53290990-53291009 | None:intergenic | 20.0% |
| !!! | AGTTCAATTATTTTAAAGCT+GGG | + | chr3_4:53291001-53291020 | Msa0506620:intron | 20.0% |
| !!! | GCAAATGAAATTTTAGATTA+AGG | - | chr3_4:53291464-53291483 | None:intergenic | 20.0% |
| !!! | GTTTTCTAGATAATATCATA+TGG | + | chr3_4:53291486-53291505 | Msa0506620:intron | 20.0% |
| !! | AAATTAGAGTTGAGAAAAAA+GGG | - | chr3_4:53291618-53291637 | None:intergenic | 20.0% |
| ! | TGAAAATTGATTATTCACAC+CGG | + | chr3_4:53285423-53285442 | Msa0506620:five_prime_UTR | 25.0% |
| !!! | CAAGTTTTTTTTTGGAAACT+CGG | - | chr3_4:53286474-53286493 | None:intergenic | 25.0% |
| !! | TATGCATTGCATTTGTTAAA+GGG | - | chr3_4:53286531-53286550 | None:intergenic | 25.0% |
| !! | TAAAGGATCATACCTTTTAT+TGG | + | chr3_4:53286556-53286575 | Msa0506620:intron | 25.0% |
| ! | CATATACAATGGGTATATAT+GGG | + | chr3_4:53286661-53286680 | Msa0506620:intron | 25.0% |
| ! | TATATATGGGCAATTCAAAT+CGG | + | chr3_4:53286674-53286693 | Msa0506620:intron | 25.0% |
| !! | GAAAAAAAATCCCTCTTTTA+AGG | - | chr3_4:53286824-53286843 | None:intergenic | 25.0% |
| ! | AATATACTATAGCAAGAGAA+AGG | - | chr3_4:53286899-53286918 | None:intergenic | 25.0% |
| !! | TTTCTCTTGCTATAGTATAT+TGG | + | chr3_4:53286898-53286917 | Msa0506620:intron | 25.0% |
| !! | TAATTTTGCTAAACATAGTG+CGG | + | chr3_4:53287426-53287445 | Msa0506620:intron | 25.0% |
| !!! | AATATTTTTGCAGAAAAAGC+TGG | - | chr3_4:53287702-53287721 | None:intergenic | 25.0% |
| !! | AGATATTTTCCTGAAAAAGT+TGG | + | chr3_4:53287831-53287850 | Msa0506620:intron | 25.0% |
| !!! | TATACAATTCCAACTTTTTC+AGG | - | chr3_4:53287843-53287862 | None:intergenic | 25.0% |
| ! | GAAGGAGAAATACATATAAA+AGG | + | chr3_4:53287951-53287970 | Msa0506620:intron | 25.0% |
| ! | GAGAAATACATATAAAAGGA+AGG | + | chr3_4:53287955-53287974 | Msa0506620:intron | 25.0% |
| ! | ATACATATAAAAGGAAGGTA+AGG | + | chr3_4:53287960-53287979 | Msa0506620:intron | 25.0% |
| !! | TTCTAATCTAAAACTGATAC+TGG | - | chr3_4:53288043-53288062 | None:intergenic | 25.0% |
| ! | ATATTAGCAGAACATCAAAT+GGG | + | chr3_4:53288083-53288102 | Msa0506620:intron | 25.0% |
| ! | TTAAGCGAAAATGATGTATA+TGG | - | chr3_4:53288112-53288131 | None:intergenic | 25.0% |
| ! | TCTAATCCCTTAATAATTGT+CGG | - | chr3_4:53288274-53288293 | None:intergenic | 25.0% |
| !! | TTTTTACTTATGCAATAGAC+AGG | + | chr3_4:53288383-53288402 | Msa0506620:intron | 25.0% |
| !! | TTTTACTTATGCAATAGACA+GGG | + | chr3_4:53288384-53288403 | Msa0506620:intron | 25.0% |
| ! | ACTCAGAAGTTCAAAATAAT+AGG | - | chr3_4:53288452-53288471 | None:intergenic | 25.0% |
| !! | GTTTTACAATTGTTGAGAAT+AGG | + | chr3_4:53288556-53288575 | Msa0506620:CDS | 25.0% |
| ! | AAAACACATGCAAAAATTTG+AGG | - | chr3_4:53288872-53288891 | None:intergenic | 25.0% |
| !! | ATTATACTGCATTTTTGTGT+TGG | + | chr3_4:53288898-53288917 | Msa0506620:intron | 25.0% |
| ! | ATGAAGCAAATACATAGATA+TGG | + | chr3_4:53289056-53289075 | Msa0506620:intron | 25.0% |
| !! | TCTAATTTTCTGATGACAAA+GGG | + | chr3_4:53289352-53289371 | Msa0506620:intron | 25.0% |
| ! | GATATATTGAATGAAACTAG+AGG | - | chr3_4:53289458-53289477 | None:intergenic | 25.0% |
| ! | TAATCATCTGTAAATATCTG+AGG | + | chr3_4:53289549-53289568 | Msa0506620:intron | 25.0% |
| !! | TTTTTACGGCTCTTATATTT+TGG | + | chr3_4:53289704-53289723 | Msa0506620:intron | 25.0% |
| !!! | TCTTTCTCATGGTTTTTTTA+AGG | + | chr3_4:53289768-53289787 | Msa0506620:intron | 25.0% |
| !!! | TCATGGTTTTTTTAAGGTAA+CGG | + | chr3_4:53289774-53289793 | Msa0506620:intron | 25.0% |
| !! | CAAAATAAACCTGTTTCTTA+GGG | - | chr3_4:53289843-53289862 | None:intergenic | 25.0% |
| !! | TCAAAATAAACCTGTTTCTT+AGG | - | chr3_4:53289844-53289863 | None:intergenic | 25.0% |
| ! | TGTTGTCTATTAAATTGGTA+TGG | + | chr3_4:53290571-53290590 | Msa0506620:intron | 25.0% |
| ! | GTTGTCTATTAAATTGGTAT+GGG | + | chr3_4:53290572-53290591 | Msa0506620:intron | 25.0% |
| !! | GAAAAATGAAAATGGCATTT+TGG | + | chr3_4:53290912-53290931 | Msa0506620:intron | 25.0% |
| !!! | GAGTTCAATTATTTTAAAGC+TGG | + | chr3_4:53291000-53291019 | Msa0506620:intron | 25.0% |
| !!! | GTTCAATTATTTTAAAGCTG+GGG | + | chr3_4:53291002-53291021 | Msa0506620:intron | 25.0% |
| !!! | CTATTTCTATACATGGATTT+TGG | + | chr3_4:53291171-53291190 | Msa0506620:intron | 25.0% |
| ! | GAAATTAGAGTTGAGAAAAA+AGG | - | chr3_4:53291619-53291638 | None:intergenic | 25.0% |
| ! | AACTTTATAGTTCCACATTT+GGG | - | chr3_4:53291719-53291738 | None:intergenic | 25.0% |
| ! | AAACTTTATAGTTCCACATT+TGG | - | chr3_4:53291720-53291739 | None:intergenic | 25.0% |
| !!! | TTTTTGAAAACAACACAATG+TGG | - | chr3_4:53291809-53291828 | None:intergenic | 25.0% |
| ! | TTTATATCCTTTCCTGATAT+GGG | - | chr3_4:53292204-53292223 | None:intergenic | 25.0% |
| !!! | TCTTTTAGTTACGCAATATA+AGG | - | chr3_4:53292416-53292435 | None:intergenic | 25.0% |
| ! | ATATTGCGTAACTAAAAGAA+CGG | + | chr3_4:53292417-53292436 | Msa0506620:three_prime_UTR | 25.0% |
| ! | AATTTTCAATGGCGTATAGA+AGG | + | chr3_4:53285577-53285596 | Msa0506620:exon | 30.0% |
| ACGGTGTAATAATTGGATTA+GGG | - | chr3_4:53285662-53285681 | None:intergenic | 30.0% | |
| TAAAGCTATTAGAGCTTCTT+CGG | + | chr3_4:53285737-53285756 | Msa0506620:CDS | 30.0% | |
| GATGGAAGAAAATTAGTTAG+AGG | + | chr3_4:53286034-53286053 | Msa0506620:intron | 30.0% | |
| AGTTGAAGAGATAGAGAAAT+TGG | + | chr3_4:53286081-53286100 | Msa0506620:intron | 30.0% | |
| CGAGTTTCCAAAAAAAAACT+TGG | + | chr3_4:53286472-53286491 | Msa0506620:intron | 30.0% | |
| ! | GTATGCATTGCATTTGTTAA+AGG | - | chr3_4:53286532-53286551 | None:intergenic | 30.0% |
| TTAACAAATGCAATGCATAC+TGG | + | chr3_4:53286532-53286551 | Msa0506620:intron | 30.0% | |
| GCATATACAATGGGTATATA+TGG | + | chr3_4:53286660-53286679 | Msa0506620:intron | 30.0% | |
| ATGTATAGATGCCTTAAAAG+AGG | + | chr3_4:53286810-53286829 | Msa0506620:intron | 30.0% | |
| TGTATAGATGCCTTAAAAGA+GGG | + | chr3_4:53286811-53286830 | Msa0506620:intron | 30.0% | |
| TTCTTGTTGCATGAATTCTT+TGG | + | chr3_4:53287072-53287091 | Msa0506620:intron | 30.0% | |
| ! | CATTACAACAAATTTGGAAC+TGG | - | chr3_4:53287209-53287228 | None:intergenic | 30.0% |
| GAAAGCAAAATCAATCATTG+AGG | + | chr3_4:53287541-53287560 | Msa0506620:CDS | 30.0% | |
| TATAAAAGGAAGGTAAGGAA+AGG | + | chr3_4:53287965-53287984 | Msa0506620:intron | 30.0% | |
| GATATTAGCAGAACATCAAA+TGG | + | chr3_4:53288082-53288101 | Msa0506620:intron | 30.0% | |
| TATTAGCAGAACATCAAATG+GGG | + | chr3_4:53288084-53288103 | Msa0506620:intron | 30.0% | |
| ACATCTTCTCTTACTCATAT+CGG | + | chr3_4:53288301-53288320 | Msa0506620:CDS | 30.0% | |
| ! | CTTTTTCCTGATATGTTTAC+GGG | - | chr3_4:53288604-53288623 | None:intergenic | 30.0% |
| !! | GCTTTTTCCTGATATGTTTA+CGG | - | chr3_4:53288605-53288624 | None:intergenic | 30.0% |
| !!! | CTGTGTATCACTTTTTAATG+TGG | + | chr3_4:53288762-53288781 | Msa0506620:intron | 30.0% |
| CATGAATCATTCCTATATTG+AGG | - | chr3_4:53289020-53289039 | None:intergenic | 30.0% | |
| CTCAATATAGGAATGATTCA+TGG | + | chr3_4:53289018-53289037 | Msa0506620:intron | 30.0% | |
| !!! | TTCAAGAGGTACTTATGTTT+TGG | - | chr3_4:53289131-53289150 | None:intergenic | 30.0% |
| GAGTAGTAAATAATTGTGCT+GGG | - | chr3_4:53289334-53289353 | None:intergenic | 30.0% | |
| AGAGTAGTAAATAATTGTGC+TGG | - | chr3_4:53289335-53289354 | None:intergenic | 30.0% | |
| ! | CTCTAATTTTCTGATGACAA+AGG | + | chr3_4:53289351-53289370 | Msa0506620:intron | 30.0% |
| AGATTGAACTAGTGATTAGA+AGG | - | chr3_4:53289504-53289523 | None:intergenic | 30.0% | |
| GAGTGATGGTACTAATAATT+TGG | + | chr3_4:53289644-53289663 | Msa0506620:intron | 30.0% | |
| !!! | TCACTCTCACTCTTTTTTTA+CGG | + | chr3_4:53289690-53289709 | Msa0506620:intron | 30.0% |
| ! | TCATTTTCTTGTCTTTCTCA+TGG | + | chr3_4:53289757-53289776 | Msa0506620:intron | 30.0% |
| ATACCAAATCATCATCATCT+TGG | - | chr3_4:53290083-53290102 | None:intergenic | 30.0% | |
| AGAGAAGTCAACAAACAAAA+AGG | - | chr3_4:53290110-53290129 | None:intergenic | 30.0% | |
| CGATAGTTGTTTATATCACA+GGG | - | chr3_4:53290224-53290243 | None:intergenic | 30.0% | |
| AGTACAAAATATTGGGAGTT+TGG | - | chr3_4:53290341-53290360 | None:intergenic | 30.0% | |
| CTTCACGAGTACAAAATATT+GGG | - | chr3_4:53290348-53290367 | None:intergenic | 30.0% | |
| ! | GTCACAGTTTAAAGTATTCT+TGG | + | chr3_4:53290537-53290556 | Msa0506620:intron | 30.0% |
| TCTTACTACTCAAAGAGAAT+AGG | - | chr3_4:53290666-53290685 | None:intergenic | 30.0% | |
| AAAACCAAATGTCAAAGAGT+TGG | + | chr3_4:53290698-53290717 | Msa0506620:intron | 30.0% | |
| ! | TTTGGTAGTTAGTGAAAACA+AGG | + | chr3_4:53290930-53290949 | Msa0506620:intron | 30.0% |
| ! | ATATTTAAGGCCTATTTGGT+TGG | - | chr3_4:53290977-53290996 | None:intergenic | 30.0% |
| ! | CTGAATATTTAAGGCCTATT+TGG | - | chr3_4:53290981-53291000 | None:intergenic | 30.0% |
| AAGTCCAATAGAAATGATGT+TGG | + | chr3_4:53291132-53291151 | Msa0506620:intron | 30.0% | |
| !! | GGTCAAACTATTTCTATACA+TGG | + | chr3_4:53291164-53291183 | Msa0506620:intron | 30.0% |
| CTTATACAGAGCTAATACAA+AGG | - | chr3_4:53291301-53291320 | None:intergenic | 30.0% | |
| TCCAAAAGACTAGATGTATT+TGG | + | chr3_4:53291553-53291572 | Msa0506620:intron | 30.0% | |
| !! | TCCAAATACATCTAGTCTTT+TGG | - | chr3_4:53291557-53291576 | None:intergenic | 30.0% |
| AATAGAGGTTAACATAGGAA+GGG | - | chr3_4:53291582-53291601 | None:intergenic | 30.0% | |
| CAAACAATAGAGGTTAACAT+AGG | - | chr3_4:53291587-53291606 | None:intergenic | 30.0% | |
| !! | GTCAATTGATTTGGTTATTC+AGG | + | chr3_4:53291777-53291796 | Msa0506620:intron | 30.0% |
| CTTTATATCCTTTCCTGATA+TGG | - | chr3_4:53292205-53292224 | None:intergenic | 30.0% | |
| AAAGGATATAAAGAGTTCTG+AGG | + | chr3_4:53292212-53292231 | Msa0506620:CDS | 30.0% | |
| ! | TTGCTCGTTTTATATATCGT+GGG | + | chr3_4:53292364-53292383 | Msa0506620:three_prime_UTR | 30.0% |
| AATTCTGGATCCAATCGAAA+CGG | - | chr3_4:53285546-53285565 | None:intergenic | 35.0% | |
| GACGGTGTAATAATTGGATT+AGG | - | chr3_4:53285663-53285682 | None:intergenic | 35.0% | |
| GAAGAAGACGGTGTAATAAT+TGG | - | chr3_4:53285669-53285688 | None:intergenic | 35.0% | |
| AAAAAAACAGAGAGAGACCT+TGG | - | chr3_4:53285853-53285872 | None:intergenic | 35.0% | |
| !! | TCAAAGGTACTCAATTGCAA+GGG | + | chr3_4:53286147-53286166 | Msa0506620:intron | 35.0% |
| CTAGTTTGAGCTAAGAGAAA+AGG | + | chr3_4:53286185-53286204 | Msa0506620:intron | 35.0% | |
| AACATAAAATGTTGGCACCT+GGG | - | chr3_4:53286374-53286393 | None:intergenic | 35.0% | |
| AAACATAAAATGTTGGCACC+TGG | - | chr3_4:53286375-53286394 | None:intergenic | 35.0% | |
| ! | AGGTGCCAACATTTTATGTT+TGG | + | chr3_4:53286374-53286393 | Msa0506620:intron | 35.0% |
| ! | GGTGCCAACATTTTATGTTT+GGG | + | chr3_4:53286375-53286394 | Msa0506620:intron | 35.0% |
| TCAAAGACTACCTAATATGG+GGG | - | chr3_4:53286443-53286462 | None:intergenic | 35.0% | |
| CTCAAAGACTACCTAATATG+GGG | - | chr3_4:53286444-53286463 | None:intergenic | 35.0% | |
| GCTCAAAGACTACCTAATAT+GGG | - | chr3_4:53286445-53286464 | None:intergenic | 35.0% | |
| !!! | TTTTTTGGAAACTCGGTATC+TGG | - | chr3_4:53286467-53286486 | None:intergenic | 35.0% |
| ! | ATGCAATGCATACTGGTTAA+AGG | + | chr3_4:53286539-53286558 | Msa0506620:intron | 35.0% |
| GGCAACAATATGCCAATAAA+AGG | - | chr3_4:53286571-53286590 | None:intergenic | 35.0% | |
| TCAAATCGGCATCAACTTTA+AGG | + | chr3_4:53286688-53286707 | Msa0506620:intron | 35.0% | |
| TTAGCGAAAACCTATGAGTT+TGG | + | chr3_4:53286714-53286733 | Msa0506620:intron | 35.0% | |
| ACTTCAACACTGTAACTTCT+AGG | - | chr3_4:53286846-53286865 | None:intergenic | 35.0% | |
| ! | ATGAAGGTCTTCTAAGGATT+TGG | - | chr3_4:53286961-53286980 | None:intergenic | 35.0% |
| ACATTGCTTTGCTCATATGA+AGG | - | chr3_4:53286977-53286996 | None:intergenic | 35.0% | |
| ! | ATTTGGAACTGGAGTTGTAT+GGG | - | chr3_4:53287198-53287217 | None:intergenic | 35.0% |
| ! | AATTTGGAACTGGAGTTGTA+TGG | - | chr3_4:53287199-53287218 | None:intergenic | 35.0% |
| AGTGCGGTGTTTGTAAATAT+AGG | + | chr3_4:53287442-53287461 | Msa0506620:intron | 35.0% | |
| ATCAATGAATCCTATCTCTG+AGG | - | chr3_4:53287671-53287690 | None:intergenic | 35.0% | |
| ATTAGCAGAACATCAAATGG+GGG | + | chr3_4:53288085-53288104 | Msa0506620:intron | 35.0% | |
| ! | CCTCTAAGTGATTCGAATTT+TGG | - | chr3_4:53288228-53288247 | None:intergenic | 35.0% |
| CCAAAATTCGAATCACTTAG+AGG | + | chr3_4:53288225-53288244 | Msa0506620:CDS | 35.0% | |
| AAATTCGAATCACTTAGAGG+AGG | + | chr3_4:53288228-53288247 | Msa0506620:CDS | 35.0% | |
| AATTCGAATCACTTAGAGGA+GGG | + | chr3_4:53288229-53288248 | Msa0506620:CDS | 35.0% | |
| GACAGTCCGACAATTATTAA+GGG | + | chr3_4:53288265-53288284 | Msa0506620:CDS | 35.0% | |
| TTATGGGAATGTGTTACAGT+AGG | + | chr3_4:53288413-53288432 | Msa0506620:intron | 35.0% | |
| AAGCATATCCTTATGGAAGA+GGG | - | chr3_4:53288495-53288514 | None:intergenic | 35.0% | |
| AAAGCATATCCTTATGGAAG+AGG | - | chr3_4:53288496-53288515 | None:intergenic | 35.0% | |
| GATCACAAAGCATATCCTTA+TGG | - | chr3_4:53288502-53288521 | None:intergenic | 35.0% | |
| TAGGACTTCAGATATCATTC+AGG | + | chr3_4:53288575-53288594 | Msa0506620:CDS | 35.0% | |
| AAACATATCAGGAAAAAGCC+TGG | + | chr3_4:53288606-53288625 | Msa0506620:CDS | 35.0% | |
| AACATATCAGGAAAAAGCCT+GGG | + | chr3_4:53288607-53288626 | Msa0506620:CDS | 35.0% | |
| TGAGTGTGTTTGTCTATCAA+AGG | + | chr3_4:53288994-53289013 | Msa0506620:intron | 35.0% | |
| TCTATCAAAGGCCTCAATAT+AGG | + | chr3_4:53289006-53289025 | Msa0506620:intron | 35.0% | |
| GATCTGTGTTTGTTTGTACA+CGG | + | chr3_4:53289166-53289185 | Msa0506620:intron | 35.0% | |
| TGTTTGTTTGTACACGGATA+TGG | + | chr3_4:53289172-53289191 | Msa0506620:intron | 35.0% | |
| !! | AGAGGAAAGAAGCATCATTT+AGG | - | chr3_4:53289440-53289459 | None:intergenic | 35.0% |
| TTAGAAGGTCAATAGATAGC+TGG | - | chr3_4:53289489-53289508 | None:intergenic | 35.0% | |
| GTAAAAAAAGAGTGAGAGTG+AGG | - | chr3_4:53289691-53289710 | None:intergenic | 35.0% | |
| !!! | TTGAAGCATTTTTTGCCATC+TGG | + | chr3_4:53289899-53289918 | Msa0506620:intron | 35.0% |
| ! | TAGCCAAGATGATGATGATT+TGG | + | chr3_4:53290077-53290096 | Msa0506620:CDS | 35.0% |
| TCTATCTCACGAAAAGACAA+GGG | - | chr3_4:53290151-53290170 | None:intergenic | 35.0% | |
| TTCTATCTCACGAAAAGACA+AGG | - | chr3_4:53290152-53290171 | None:intergenic | 35.0% | |
| TTTCGTGAGATAGAAGTTGA+TGG | + | chr3_4:53290157-53290176 | Msa0506620:intron | 35.0% | |
| GCGATAGTTGTTTATATCAC+AGG | - | chr3_4:53290225-53290244 | None:intergenic | 35.0% | |
| CCTTCACGAGTACAAAATAT+TGG | - | chr3_4:53290349-53290368 | None:intergenic | 35.0% | |
| ! | CCAATATTTTGTACTCGTGA+AGG | + | chr3_4:53290346-53290365 | Msa0506620:intron | 35.0% |
| GTCTATTAAATTGGTATGGG+TGG | + | chr3_4:53290575-53290594 | Msa0506620:intron | 35.0% | |
| CAAATGTCAAAGAGTTGGAT+GGG | + | chr3_4:53290703-53290722 | Msa0506620:intron | 35.0% | |
| AAATGTCAAAGAGTTGGATG+GGG | + | chr3_4:53290704-53290723 | Msa0506620:intron | 35.0% | |
| AATGTGTTGTCAAACCAAAG+AGG | - | chr3_4:53290744-53290763 | None:intergenic | 35.0% | |
| GGTTTGACTATACCCTAAAT+TGG | + | chr3_4:53291023-53291042 | Msa0506620:intron | 35.0% | |
| GAAACAGAGAAGCCAATTTA+GGG | - | chr3_4:53291038-53291057 | None:intergenic | 35.0% | |
| TGAAACAGAGAAGCCAATTT+AGG | - | chr3_4:53291039-53291058 | None:intergenic | 35.0% | |
| ATGGCCAACATCATTTCTAT+TGG | - | chr3_4:53291139-53291158 | None:intergenic | 35.0% | |
| GAAATAGTTTGACCATCTCA+TGG | - | chr3_4:53291158-53291177 | None:intergenic | 35.0% | |
| TCACAAACTTCAGAGAATCA+TGG | - | chr3_4:53291263-53291282 | None:intergenic | 35.0% | |
| CAATAGAGGTTAACATAGGA+AGG | - | chr3_4:53291583-53291602 | None:intergenic | 35.0% | |
| GGAGTAAGTACAAACAATAG+AGG | - | chr3_4:53291597-53291616 | None:intergenic | 35.0% | |
| TCTTTACGAGTGTCTTCAAA+GGG | - | chr3_4:53291682-53291701 | None:intergenic | 35.0% | |
| TTCTTTACGAGTGTCTTCAA+AGG | - | chr3_4:53291683-53291702 | None:intergenic | 35.0% | |
| AACACCGAATTATAAACCAG+AGG | - | chr3_4:53291755-53291774 | None:intergenic | 35.0% | |
| ! | CGGTGTTAAGTCAATTGATT+TGG | + | chr3_4:53291768-53291787 | Msa0506620:intron | 35.0% |
| TTAGGTGAAATGAGTAGTGT+TGG | - | chr3_4:53291848-53291867 | None:intergenic | 35.0% | |
| ATATCATCAACTTACGATGC+AGG | + | chr3_4:53292005-53292024 | Msa0506620:CDS | 35.0% | |
| ATGGGATCAGAATTAACAAG+AGG | + | chr3_4:53292168-53292187 | Msa0506620:CDS | 35.0% | |
| ! | GTTGCTCGTTTTATATATCG+TGG | + | chr3_4:53292363-53292382 | Msa0506620:three_prime_UTR | 35.0% |
| TGCATTTAGTGCTTGTCAAA+CGG | + | chr3_4:53292547-53292566 | Msa0506620:three_prime_UTR | 35.0% | |
| !! | TATTCACACCGGTTCATGAT+CGG | + | chr3_4:53285434-53285453 | Msa0506620:five_prime_UTR | 40.0% |
| GATTCTTCCAGAATCTTCGT+CGG | - | chr3_4:53285492-53285511 | None:intergenic | 40.0% | |
| AATTCAACCTCCTCGAATTC+TGG | - | chr3_4:53285561-53285580 | None:intergenic | 40.0% | |
| ! | CGAGGAGGTTGAATTTTCAA+TGG | + | chr3_4:53285566-53285585 | Msa0506620:exon | 40.0% |
| GCGTATAGAAGGAGACAATA+CGG | + | chr3_4:53285588-53285607 | Msa0506620:CDS | 40.0% | |
| CCATCATTACTCGAAGAAGA+CGG | - | chr3_4:53285681-53285700 | None:intergenic | 40.0% | |
| CGTTGACACTTCTTCAACTT+CGG | + | chr3_4:53285701-53285720 | Msa0506620:CDS | 40.0% | |
| ! | TCTTCGCTTTCGTCACTTTA+TGG | + | chr3_4:53285771-53285790 | Msa0506620:CDS | 40.0% |
| TTTGACACACAGAGAAACAG+GGG | - | chr3_4:53286132-53286151 | None:intergenic | 40.0% | |
| CTTTGACACACAGAGAAACA+GGG | - | chr3_4:53286133-53286152 | None:intergenic | 40.0% | |
| !! | GTCAAAGGTACTCAATTGCA+AGG | + | chr3_4:53286146-53286165 | Msa0506620:intron | 40.0% |
| !! | CAAAGGTACTCAATTGCAAG+GGG | + | chr3_4:53286148-53286167 | Msa0506620:intron | 40.0% |
| !! | AAAGGTACTCAATTGCAAGG+GGG | + | chr3_4:53286149-53286168 | Msa0506620:intron | 40.0% |
| TGAGCTAAGAGAAAAGGAGT+TGG | + | chr3_4:53286191-53286210 | Msa0506620:intron | 40.0% | |
| TAAAATCTTTAGCGCGAAGC+TGG | + | chr3_4:53286298-53286317 | Msa0506620:intron | 40.0% | |
| GTTTCATGTTCAATTACCCC+AGG | + | chr3_4:53286354-53286373 | Msa0506620:intron | 40.0% | |
| ACATAAAATGTTGGCACCTG+GGG | - | chr3_4:53286373-53286392 | None:intergenic | 40.0% | |
| CTGGCCCAAACATAAAATGT+TGG | - | chr3_4:53286382-53286401 | None:intergenic | 40.0% | |
| AACCAAAGGTTTGTAGAGAC+TGG | - | chr3_4:53286401-53286420 | None:intergenic | 40.0% | |
| GTCTCTACAAACCTTTGGTT+TGG | + | chr3_4:53286401-53286420 | Msa0506620:intron | 40.0% | |
| AAAGACTACCTAATATGGGG+GGG | - | chr3_4:53286441-53286460 | None:intergenic | 40.0% | |
| CAAAGACTACCTAATATGGG+GGG | - | chr3_4:53286442-53286461 | None:intergenic | 40.0% | |
| GGCTCAAAGACTACCTAATA+TGG | - | chr3_4:53286446-53286465 | None:intergenic | 40.0% | |
| CCCATTGTATATGCTACACA+GGG | - | chr3_4:53286654-53286673 | None:intergenic | 40.0% | |
| CCCTGTGTAGCATATACAAT+GGG | + | chr3_4:53286651-53286670 | Msa0506620:intron | 40.0% | |
| ACCCATTGTATATGCTACAC+AGG | - | chr3_4:53286655-53286674 | None:intergenic | 40.0% | |
| AGAAGCTAGTCCAAACTCAT+AGG | - | chr3_4:53286727-53286746 | None:intergenic | 40.0% | |
| !! | TTGGACTAGCTTCTAGTTGA+TGG | + | chr3_4:53286733-53286752 | Msa0506620:intron | 40.0% |
| !! | TGGACTAGCTTCTAGTTGAT+GGG | + | chr3_4:53286734-53286753 | Msa0506620:intron | 40.0% |
| CTAAGGATTTGGAGGCAATA+GGG | - | chr3_4:53286950-53286969 | None:intergenic | 40.0% | |
| TCTAAGGATTTGGAGGCAAT+AGG | - | chr3_4:53286951-53286970 | None:intergenic | 40.0% | |
| ! | AAGGTCTTCTAAGGATTTGG+AGG | - | chr3_4:53286958-53286977 | None:intergenic | 40.0% |
| GCTCATATGAAGGTCTTCTA+AGG | - | chr3_4:53286967-53286986 | None:intergenic | 40.0% | |
| ! | TGTCTGTGACTATTTCTCTG+AGG | + | chr3_4:53287020-53287039 | Msa0506620:intron | 40.0% |
| ACAACCTAAAGCTATTGCTG+AGG | + | chr3_4:53287279-53287298 | Msa0506620:intron | 40.0% | |
| GAAGATTCGAAATGCATGTG+TGG | + | chr3_4:53287317-53287336 | Msa0506620:intron | 40.0% | |
| AAATTGAATGAGCCCAAGAG+TGG | + | chr3_4:53287497-53287516 | Msa0506620:CDS | 40.0% | |
| ! | ACACCAGAATCTGAAATACC+TGG | + | chr3_4:53287575-53287594 | Msa0506620:CDS | 40.0% |
| ! | CACCAGAATCTGAAATACCT+GGG | + | chr3_4:53287576-53287595 | Msa0506620:CDS | 40.0% |
| ACAACAAGGTCACAATATCC+TGG | + | chr3_4:53287599-53287618 | Msa0506620:CDS | 40.0% | |
| AATATCCTGGCGTAACATCA+AGG | + | chr3_4:53287612-53287631 | Msa0506620:CDS | 40.0% | |
| ATATCCTGGCGTAACATCAA+GGG | + | chr3_4:53287613-53287632 | Msa0506620:CDS | 40.0% | |
| ! | TTGGTAACATAATGTGGTCG+TGG | + | chr3_4:53287722-53287741 | Msa0506620:intron | 40.0% |
| TGGTAACATAATGTGGTCGT+GGG | + | chr3_4:53287723-53287742 | Msa0506620:intron | 40.0% | |
| TTAGCAGAACATCAAATGGG+GGG | + | chr3_4:53288086-53288105 | Msa0506620:intron | 40.0% | |
| GACACTAGCATCCAATTTCA+TGG | - | chr3_4:53288190-53288209 | None:intergenic | 40.0% | |
| GGACAGTCCGACAATTATTA+AGG | + | chr3_4:53288264-53288283 | Msa0506620:CDS | 40.0% | |
| TCTTCTCTTACTCATATCGG+TGG | + | chr3_4:53288304-53288323 | Msa0506620:CDS | 40.0% | |
| TGGCACCATTGGTAAATCTT+TGG | + | chr3_4:53288324-53288343 | Msa0506620:CDS | 40.0% | |
| CACCATTGGTAAATCTTTGG+AGG | + | chr3_4:53288327-53288346 | Msa0506620:CDS | 40.0% | |
| CACCTCCAAAGATTTACCAA+TGG | - | chr3_4:53288332-53288351 | None:intergenic | 40.0% | |
| ACTTATGCAATAGACAGGGA+TGG | + | chr3_4:53288388-53288407 | Msa0506620:intron | 40.0% | |
| CTTATGCAATAGACAGGGAT+GGG | + | chr3_4:53288389-53288408 | Msa0506620:intron | 40.0% | |
| AATAGACAGGGATGGGATTA+TGG | + | chr3_4:53288396-53288415 | Msa0506620:intron | 40.0% | |
| ATAGACAGGGATGGGATTAT+GGG | + | chr3_4:53288397-53288416 | Msa0506620:intron | 40.0% | |
| TATCCTTATGGAAGAGGGAA+AGG | - | chr3_4:53288490-53288509 | None:intergenic | 40.0% | |
| AGGAAACCCGTAAACATATC+AGG | + | chr3_4:53288595-53288614 | Msa0506620:CDS | 40.0% | |
| AAAAAGCCTGGGAACTTTGT+AGG | + | chr3_4:53288618-53288637 | Msa0506620:CDS | 40.0% | |
| GTTCTTGCAACGTTGTAGAA+TGG | - | chr3_4:53288662-53288681 | None:intergenic | 40.0% | |
| AGATCAAGAACTTCAGCTGA+AGG | + | chr3_4:53288716-53288735 | Msa0506620:CDS | 40.0% | |
| ! | ATGTGGTAAAAGTACACGTG+TGG | + | chr3_4:53288779-53288798 | Msa0506620:intron | 40.0% |
| AGTACACGTGTGGTTAAGTA+CGG | + | chr3_4:53288789-53288808 | Msa0506620:intron | 40.0% | |
| AGATGGACCTAGGAAAACTA+TGG | - | chr3_4:53289594-53289613 | None:intergenic | 40.0% | |
| ! | GTTTTCCTAGGTCCATCTTA+CGG | + | chr3_4:53289596-53289615 | Msa0506620:intron | 40.0% |
| ! | TACCATCACTCTTGTTTCAG+CGG | - | chr3_4:53289635-53289654 | None:intergenic | 40.0% |
| CCAAAGCAAAACTGCTTCTT+CGG | + | chr3_4:53289953-53289972 | Msa0506620:CDS | 40.0% | |
| CAAAGCAAAACTGCTTCTTC+GGG | + | chr3_4:53289954-53289973 | Msa0506620:CDS | 40.0% | |
| !! | ACCATCGATTACTTTTGCTG+TGG | + | chr3_4:53290271-53290290 | Msa0506620:intron | 40.0% |
| ACCACAGCAAAAGTAATCGA+TGG | - | chr3_4:53290275-53290294 | None:intergenic | 40.0% | |
| AATCTACTTCAAGCCCCATA+TGG | + | chr3_4:53290386-53290405 | Msa0506620:intron | 40.0% | |
| TATTTAATGCTACCCCTGCA+GGG | + | chr3_4:53290433-53290452 | Msa0506620:intron | 40.0% | |
| ! | TGATGTTGCCTGCTTCTTTT+CGG | + | chr3_4:53290497-53290516 | Msa0506620:intron | 40.0% |
| TTAAATTGGTATGGGTGGAG+AGG | + | chr3_4:53290580-53290599 | Msa0506620:intron | 40.0% | |
| TAAATTGGTATGGGTGGAGA+GGG | + | chr3_4:53290581-53290600 | Msa0506620:intron | 40.0% | |
| CCATCCAACTCTTTGACATT+TGG | - | chr3_4:53290705-53290724 | None:intergenic | 40.0% | |
| CCAAATGTCAAAGAGTTGGA+TGG | + | chr3_4:53290702-53290721 | Msa0506620:intron | 40.0% | |
| TTGGATGGGGCTGTAATATA+GGG | + | chr3_4:53290717-53290736 | Msa0506620:intron | 40.0% | |
| AGCTTCTTCTCCAACCAAAT+AGG | + | chr3_4:53290964-53290983 | Msa0506620:intron | 40.0% | |
| AAATGATGTTGGCCATGAGA+TGG | + | chr3_4:53291143-53291162 | Msa0506620:intron | 40.0% | |
| GCATAAAGTGTACTGTGCAA+AGG | + | chr3_4:53291214-53291233 | Msa0506620:intron | 40.0% | |
| TAAAGTGTACTGTGCAAAGG+TGG | + | chr3_4:53291217-53291236 | Msa0506620:intron | 40.0% | |
| AAAGTGTACTGTGCAAAGGT+GGG | + | chr3_4:53291218-53291237 | Msa0506620:intron | 40.0% | |
| CTTTACGAGTGTCTTCAAAG+GGG | - | chr3_4:53291681-53291700 | None:intergenic | 40.0% | |
| CACATTTGGGTAAAGCTTCT+TGG | - | chr3_4:53291706-53291725 | None:intergenic | 40.0% | |
| CAAGAAGCTTTACCCAAATG+TGG | + | chr3_4:53291704-53291723 | Msa0506620:intron | 40.0% | |
| CCGAATTATAAACCAGAGGT+GGG | - | chr3_4:53291751-53291770 | None:intergenic | 40.0% | |
| ! | CCCACCTCTGGTTTATAATT+CGG | + | chr3_4:53291748-53291767 | Msa0506620:intron | 40.0% |
| ACCGAATTATAAACCAGAGG+TGG | - | chr3_4:53291752-53291771 | None:intergenic | 40.0% | |
| AGTTGCAGTCGTATCTGTAA+GGG | - | chr3_4:53291898-53291917 | None:intergenic | 40.0% | |
| AAGTTGCAGTCGTATCTGTA+AGG | - | chr3_4:53291899-53291918 | None:intergenic | 40.0% | |
| ! | TTAGAATCGAGGGGCATAAT+AGG | - | chr3_4:53292099-53292118 | None:intergenic | 40.0% |
| ! | AGACGGAGTATTAGAATCGA+GGG | - | chr3_4:53292109-53292128 | None:intergenic | 40.0% |
| TGAAGACATTGATAGGGATG+TGG | - | chr3_4:53292133-53292152 | None:intergenic | 40.0% | |
| GGCATCTGAAGACATTGATA+GGG | - | chr3_4:53292139-53292158 | None:intergenic | 40.0% | |
| TGGCATCTGAAGACATTGAT+AGG | - | chr3_4:53292140-53292159 | None:intergenic | 40.0% | |
| ATGTCTTCAGATGCCAATCT+TGG | + | chr3_4:53292144-53292163 | Msa0506620:CDS | 40.0% | |
| TTCATCTCCCATATCAGGAA+AGG | + | chr3_4:53292194-53292213 | Msa0506620:CDS | 40.0% | |
| !! | GAGTTCTGAGGTGATTGTAA+AGG | + | chr3_4:53292224-53292243 | Msa0506620:CDS | 40.0% |
| !! | AAGAGCATCTCTTCTATAGC+TGG | + | chr3_4:53292267-53292286 | Msa0506620:CDS | 40.0% |
| CATCTCTTCTATAGCTGGAA+AGG | + | chr3_4:53292272-53292291 | Msa0506620:CDS | 40.0% | |
| TCTTCTATAGCTGGAAAGGA+CGG | + | chr3_4:53292276-53292295 | Msa0506620:CDS | 40.0% | |
| ! | TTTGGGATCCGATCATGAAC+CGG | - | chr3_4:53285445-53285464 | None:intergenic | 45.0% |
| GTTGCGATAACCGTTTCGAT+TGG | + | chr3_4:53285533-53285552 | Msa0506620:five_prime_UTR | 45.0% | |
| TCGATTGGATCCAGAATTCG+AGG | + | chr3_4:53285548-53285567 | Msa0506620:five_prime_UTR | 45.0% | |
| ATTGGATCCAGAATTCGAGG+AGG | + | chr3_4:53285551-53285570 | Msa0506620:five_prime_UTR | 45.0% | |
| CCGTCTTCTTCGAGTAATGA+TGG | + | chr3_4:53285678-53285697 | Msa0506620:CDS | 45.0% | |
| ACTCTAATCTCTCTTCTCCG+CGG | + | chr3_4:53285796-53285815 | Msa0506620:CDS | 45.0% | |
| AAAACAGAGAGAGACCTTGG+AGG | - | chr3_4:53285850-53285869 | None:intergenic | 45.0% | |
| CCTTTGACACACAGAGAAAC+AGG | - | chr3_4:53286134-53286153 | None:intergenic | 45.0% | |
| ! | CCTGTTTCTCTGTGTGTCAA+AGG | + | chr3_4:53286131-53286150 | Msa0506620:intron | 45.0% |
| TACTCAATTGCAAGGGGGTT+GGG | + | chr3_4:53286154-53286173 | Msa0506620:intron | 45.0% | |
| GCTAAGAGAAAAGGAGTTGG+AGG | + | chr3_4:53286194-53286213 | Msa0506620:intron | 45.0% | |
| AGAAAAGGAGTTGGAGGTTC+TGG | + | chr3_4:53286200-53286219 | Msa0506620:intron | 45.0% | |
| GAAAAGGAGTTGGAGGTTCT+GGG | + | chr3_4:53286201-53286220 | Msa0506620:intron | 45.0% | |
| CTGGGTTCAAACTCGTTTGA+AGG | + | chr3_4:53286219-53286238 | Msa0506620:intron | 45.0% | |
| TAGCGCGAAGCTGGAAAAAA+TGG | + | chr3_4:53286307-53286326 | Msa0506620:intron | 45.0% | |
| ! | CAAGCGAAAAGCACACTCAT+AGG | - | chr3_4:53286334-53286353 | None:intergenic | 45.0% |
| ! | CTATGAGTGTGCTTTTCGCT+TGG | + | chr3_4:53286332-53286351 | Msa0506620:intron | 45.0% |
| GGCAATTGAAGCCAAACCAA+AGG | - | chr3_4:53286415-53286434 | None:intergenic | 45.0% | |
| AAGACTACCTAATATGGGGG+GGG | - | chr3_4:53286440-53286459 | None:intergenic | 45.0% | |
| ACTCACACTTGACTTTGTGC+AGG | - | chr3_4:53286592-53286611 | None:intergenic | 45.0% | |
| GCACAAAGTCAAGTGTGAGT+AGG | + | chr3_4:53286592-53286611 | Msa0506620:intron | 45.0% | |
| AGTCAAGTGTGAGTAGGCAA+TGG | + | chr3_4:53286598-53286617 | Msa0506620:intron | 45.0% | |
| ACAAACCTTGCAAAGCCAGA+GGG | - | chr3_4:53286627-53286646 | None:intergenic | 45.0% | |
| GCCCTGTGTAGCATATACAA+TGG | + | chr3_4:53286650-53286669 | Msa0506620:intron | 45.0% | |
| GTGACCTCAGCAATAGCTTT+AGG | - | chr3_4:53287286-53287305 | None:intergenic | 45.0% | |
| !! | ATGAGCCCAAGAGTGGATTT+TGG | + | chr3_4:53287504-53287523 | Msa0506620:CDS | 45.0% |
| !! | TGAGCCCAAGAGTGGATTTT+GGG | + | chr3_4:53287505-53287524 | Msa0506620:CDS | 45.0% |
| GTCCCAGGTATTTCAGATTC+TGG | - | chr3_4:53287581-53287600 | None:intergenic | 45.0% | |
| CTGAAATACCTGGGACAACA+AGG | + | chr3_4:53287585-53287604 | Msa0506620:CDS | 45.0% | |
| ! | TATTGTGACCTTGTTGTCCC+AGG | - | chr3_4:53287596-53287615 | None:intergenic | 45.0% |
| TATCCTGGCGTAACATCAAG+GGG | + | chr3_4:53287614-53287633 | Msa0506620:CDS | 45.0% | |
| TCTCTCAAGTCCTCAGAGAT+AGG | + | chr3_4:53287658-53287677 | Msa0506620:intron | 45.0% | |
| TAGAGGAGGGCAATCTCAAA+AGG | + | chr3_4:53288242-53288261 | Msa0506620:CDS | 45.0% | |
| AGAGGAGGGCAATCTCAAAA+GGG | + | chr3_4:53288243-53288262 | Msa0506620:CDS | 45.0% | |
| TCTCCTTTCCCTCTTCCATA+AGG | + | chr3_4:53288484-53288503 | Msa0506620:intron | 45.0% | |
| CCTGCAAACACGAATTGCAT+GGG | - | chr3_4:53288533-53288552 | None:intergenic | 45.0% | |
| TCCTGCAAACACGAATTGCA+TGG | - | chr3_4:53288534-53288553 | None:intergenic | 45.0% | |
| TGCAATTCGTGTTTGCAGGA+AGG | + | chr3_4:53288534-53288553 | Msa0506620:intron | 45.0% | |
| GAACTTTGTAGGACAGAGTC+AGG | + | chr3_4:53288629-53288648 | Msa0506620:CDS | 45.0% | |
| AGTTCTTGATCTCCTTGCGT+TGG | - | chr3_4:53288708-53288727 | None:intergenic | 45.0% | |
| CAGACTTCATGTCCGTAAGA+TGG | - | chr3_4:53289611-53289630 | None:intergenic | 45.0% | |
| AAAAAGAGTGAGAGTGAGGC+TGG | - | chr3_4:53289687-53289706 | None:intergenic | 45.0% | |
| TTTCTTAGGGTAGAGAGGGA+AGG | - | chr3_4:53289830-53289849 | None:intergenic | 45.0% | |
| ! | CCTGTTTCTTAGGGTAGAGA+GGG | - | chr3_4:53289834-53289853 | None:intergenic | 45.0% |
| ! | ACCTGTTTCTTAGGGTAGAG+AGG | - | chr3_4:53289835-53289854 | None:intergenic | 45.0% |
| AACCTGCAACGAAATCCAGA+TGG | - | chr3_4:53289917-53289936 | None:intergenic | 45.0% | |
| GATTTCGTTGCAGGTTGCAA+TGG | + | chr3_4:53289921-53289940 | Msa0506620:intron | 45.0% | |
| ! | CCGAAGAAGCAGTTTTGCTT+TGG | - | chr3_4:53289956-53289975 | None:intergenic | 45.0% |
| TACTTCAAGCCCCATATGGT+GGG | + | chr3_4:53290390-53290409 | Msa0506620:intron | 45.0% | |
| ACACAAGACTCCCACCATAT+GGG | - | chr3_4:53290403-53290422 | None:intergenic | 45.0% | |
| TACACAAGACTCCCACCATA+TGG | - | chr3_4:53290404-53290423 | None:intergenic | 45.0% | |
| ! | ATGGTGGGAGTCTTGTGTAT+TGG | + | chr3_4:53290405-53290424 | Msa0506620:intron | 45.0% |
| GTATTTAATGCTACCCCTGC+AGG | + | chr3_4:53290432-53290451 | Msa0506620:intron | 45.0% | |
| ATTTAATGCTACCCCTGCAG+GGG | + | chr3_4:53290434-53290453 | Msa0506620:intron | 45.0% | |
| TGAGACAACCGAAAAGAAGC+AGG | - | chr3_4:53290508-53290527 | None:intergenic | 45.0% | |
| GTTGGATGGGGCTGTAATAT+AGG | + | chr3_4:53290716-53290735 | Msa0506620:intron | 45.0% | |
| TGGATGGGGCTGTAATATAG+GGG | + | chr3_4:53290718-53290737 | Msa0506620:intron | 45.0% | |
| CTGTAATATAGGGGCCTCTT+TGG | + | chr3_4:53290727-53290746 | Msa0506620:intron | 45.0% | |
| ! | GTTTGAGTTTATCCCACCTC+TGG | + | chr3_4:53291736-53291755 | Msa0506620:intron | 45.0% |
| TCGTGAGAATCGCTTTCTGA+GGG | + | chr3_4:53291972-53291991 | Msa0506620:CDS | 45.0% | |
| GTACTTAGACGAGAGCAATG+AGG | + | chr3_4:53292035-53292054 | Msa0506620:CDS | 45.0% | |
| ! | GACGGAGTATTAGAATCGAG+GGG | - | chr3_4:53292108-53292127 | None:intergenic | 45.0% |
| ! | CAGACGGAGTATTAGAATCG+AGG | - | chr3_4:53292110-53292129 | None:intergenic | 45.0% |
| ATTGATAGGGATGTGGCAGA+CGG | - | chr3_4:53292126-53292145 | None:intergenic | 45.0% | |
| TTCAGATGCCAATCTTGGCA+TGG | + | chr3_4:53292149-53292168 | Msa0506620:CDS | 45.0% | |
| TCAGATGCCAATCTTGGCAT+GGG | + | chr3_4:53292150-53292169 | Msa0506620:CDS | 45.0% | |
| TTCTGATCCCATGCCAAGAT+TGG | - | chr3_4:53292160-53292179 | None:intergenic | 45.0% | |
| GGCATTTCATCTCCCATATC+AGG | + | chr3_4:53292189-53292208 | Msa0506620:CDS | 45.0% | |
| ACTGACGCTTCAGTGTATCA+TGG | - | chr3_4:53292504-53292523 | None:intergenic | 45.0% | |
| !!! | TATTTTTTAATAGAAATAAA+AGG | + | chr3_4:53287906-53287925 | Msa0506620:intron | 5.0% |
| TGAAGAACTCTGATGCGACC+GGG | - | chr3_4:53285394-53285413 | None:intergenic | 50.0% | |
| GTGAAGAACTCTGATGCGAC+CGG | - | chr3_4:53285395-53285414 | None:intergenic | 50.0% | |
| TCCAGAATCTTCGTCGGTGA+CGG | - | chr3_4:53285486-53285505 | None:intergenic | 50.0% | |
| GCTTCGTCTTCGAAAAGCGA+AGG | - | chr3_4:53285630-53285649 | None:intergenic | 50.0% | |
| GTACTCAATTGCAAGGGGGT+TGG | + | chr3_4:53286153-53286172 | Msa0506620:intron | 50.0% | |
| GGCCAGTCTCTACAAACCTT+TGG | + | chr3_4:53286396-53286415 | Msa0506620:intron | 50.0% | |
| AGACTACCTAATATGGGGGG+GGG | - | chr3_4:53286439-53286458 | None:intergenic | 50.0% | |
| CACAAACCTTGCAAAGCCAG+AGG | - | chr3_4:53286628-53286647 | None:intergenic | 50.0% | |
| !! | GAGCCCAAGAGTGGATTTTG+GGG | + | chr3_4:53287506-53287525 | Msa0506620:CDS | 50.0% |
| ACGCCCCAAAATCCACTCTT+GGG | - | chr3_4:53287512-53287531 | None:intergenic | 50.0% | |
| AACGCCCCAAAATCCACTCT+TGG | - | chr3_4:53287513-53287532 | None:intergenic | 50.0% | |
| !!! | GATTTTGGGGCGTTCTAGCT+AGG | + | chr3_4:53287519-53287538 | Msa0506620:CDS | 50.0% |
| TTTCCCCTTGATGTTACGCC+AGG | - | chr3_4:53287620-53287639 | None:intergenic | 50.0% | |
| TGGCGTAACATCAAGGGGAA+AGG | + | chr3_4:53287619-53287638 | Msa0506620:CDS | 50.0% | |
| ! | GCTAGTGTCATTCTCTGTGC+AGG | + | chr3_4:53288201-53288220 | Msa0506620:intron | 50.0% |
| ACTCATATCGGTGGCACCAT+TGG | + | chr3_4:53288313-53288332 | Msa0506620:CDS | 50.0% | |
| CCCATGCAATTCGTGTTTGC+AGG | + | chr3_4:53288530-53288549 | Msa0506620:intron | 50.0% | |
| CTCTGTCCTACAAAGTTCCC+AGG | - | chr3_4:53288627-53288646 | None:intergenic | 50.0% | |
| !! | TGAGGTTCTAAAGCCTACCC+AGG | + | chr3_4:53289567-53289586 | Msa0506620:intron | 50.0% |
| !! | GAGGTTCTAAAGCCTACCCA+GGG | + | chr3_4:53289568-53289587 | Msa0506620:intron | 50.0% |
| CCTAGGAAAACTATGGCCCT+GGG | - | chr3_4:53289587-53289606 | None:intergenic | 50.0% | |
| ACCTAGGAAAACTATGGCCC+TGG | - | chr3_4:53289588-53289607 | None:intergenic | 50.0% | |
| CATGTCCGTAAGATGGACCT+AGG | - | chr3_4:53289604-53289623 | None:intergenic | 50.0% | |
| GACCGCTGAAACAAGAGTGA+TGG | + | chr3_4:53289630-53289649 | Msa0506620:intron | 50.0% | |
| CCCTCTCTACCCTAAGAAAC+AGG | + | chr3_4:53289831-53289850 | Msa0506620:intron | 50.0% | |
| TGCCATCTGGATTTCGTTGC+AGG | + | chr3_4:53289912-53289931 | Msa0506620:intron | 50.0% | |
| GTTGCAGGTTGCAATGGCAA+TGG | + | chr3_4:53289927-53289946 | Msa0506620:intron | 50.0% | |
| TCGGGAGTTGAAGACTGTCA+AGG | + | chr3_4:53289972-53289991 | Msa0506620:CDS | 50.0% | |
| GAAGACTGTCAAGGCTGATC+TGG | + | chr3_4:53289981-53290000 | Msa0506620:CDS | 50.0% | |
| GGCTGATCTGGCATTTGCAA+AGG | + | chr3_4:53289993-53290012 | Msa0506620:CDS | 50.0% | |
| GGATCGATGTGCTCAACTAG+AGG | + | chr3_4:53290014-53290033 | Msa0506620:CDS | 50.0% | |
| TCCTCCGTGTAAATCGCGAA+AGG | + | chr3_4:53290049-53290068 | Msa0506620:CDS | 50.0% | |
| CCTCCGTGTAAATCGCGAAA+GGG | + | chr3_4:53290050-53290069 | Msa0506620:CDS | 50.0% | |
| CTCCGTGTAAATCGCGAAAG+GGG | + | chr3_4:53290051-53290070 | Msa0506620:CDS | 50.0% | |
| CTCCCCTTTCGCGATTTACA+CGG | - | chr3_4:53290056-53290075 | None:intergenic | 50.0% | |
| CTACTTCAAGCCCCATATGG+TGG | + | chr3_4:53290389-53290408 | Msa0506620:intron | 50.0% | |
| CACAAGACTCCCACCATATG+GGG | - | chr3_4:53290402-53290421 | None:intergenic | 50.0% | |
| CAAACTCAAAACCCCTGCAG+GGG | - | chr3_4:53290448-53290467 | None:intergenic | 50.0% | |
| CCAAACTCAAAACCCCTGCA+GGG | - | chr3_4:53290449-53290468 | None:intergenic | 50.0% | |
| TACTGTGCAAAGGTGGGCAA+AGG | + | chr3_4:53291224-53291243 | Msa0506620:intron | 50.0% | |
| ACTGTGCAAAGGTGGGCAAA+GGG | + | chr3_4:53291225-53291244 | Msa0506620:intron | 50.0% | |
| GTGTCTTCAAAGGGGAAGCA+GGG | - | chr3_4:53291673-53291692 | None:intergenic | 50.0% | |
| AGTGTCTTCAAAGGGGAAGC+AGG | - | chr3_4:53291674-53291693 | None:intergenic | 50.0% | |
| TCTAGCTGAGAAAGCTCGCT+TGG | + | chr3_4:53291927-53291946 | Msa0506620:CDS | 50.0% | |
| CTCGTGAGAATCGCTTTCTG+AGG | + | chr3_4:53291971-53291990 | Msa0506620:CDS | 50.0% | |
| ! | TGAGAATCGCTTTCTGAGGG+AGG | + | chr3_4:53291975-53291994 | Msa0506620:CDS | 50.0% |
| GGTGAGTGGTGGCTCGATTT+GGG | - | chr3_4:53285462-53285481 | None:intergenic | 55.0% | |
| TGGTGAGTGGTGGCTCGATT+TGG | - | chr3_4:53285463-53285482 | None:intergenic | 55.0% | |
| ! | AGAATCTTCGTCGGTGACGG+TGG | - | chr3_4:53285483-53285502 | None:intergenic | 55.0% |
| ACCGTCACCGACGAAGATTC+TGG | + | chr3_4:53285482-53285501 | Msa0506620:five_prime_UTR | 55.0% | |
| CAAAACCGCGCTGAGCGTTA+CGG | + | chr3_4:53285511-53285530 | Msa0506620:five_prime_UTR | 55.0% | |
| ! | GTAGGAGTAGGTTGAGACCG+CGG | - | chr3_4:53285816-53285835 | None:intergenic | 55.0% |
| GATGGAGGAGCAGTAGGAGT+AGG | - | chr3_4:53285828-53285847 | None:intergenic | 55.0% | |
| TTGGAGGATGGAGGAGCAGT+AGG | - | chr3_4:53285834-53285853 | None:intergenic | 55.0% | |
| TACTGCTCCTCCATCCTCCA+AGG | + | chr3_4:53285833-53285852 | Msa0506620:CDS | 55.0% | |
| AGAGAGACCTTGGAGGATGG+AGG | - | chr3_4:53285843-53285862 | None:intergenic | 55.0% | |
| CAGAGAGAGACCTTGGAGGA+TGG | - | chr3_4:53285846-53285865 | None:intergenic | 55.0% | |
| GACACACAGAGAAACAGGGG+AGG | - | chr3_4:53286129-53286148 | None:intergenic | 55.0% | |
| ACTACCTAATATGGGGGGGG+GGG | - | chr3_4:53286437-53286456 | None:intergenic | 55.0% | |
| GACTACCTAATATGGGGGGG+GGG | - | chr3_4:53286438-53286457 | None:intergenic | 55.0% | |
| AGTAGGCAATGGAAGCCCTC+TGG | + | chr3_4:53286609-53286628 | Msa0506620:intron | 55.0% | |
| CGTTGCAAGAACCCCAGTTG+CGG | + | chr3_4:53288670-53288689 | Msa0506620:CDS | 55.0% | |
| ! | TCCTTGCGTTGGCGACATCT+GGG | - | chr3_4:53288697-53288716 | None:intergenic | 55.0% |
| !! | TGAAGGCATCTCGCGACGTA+AGG | + | chr3_4:53288733-53288752 | Msa0506620:intron | 55.0% |
| GGAAAACTATGGCCCTGGGT+AGG | - | chr3_4:53289583-53289602 | None:intergenic | 55.0% | |
| ! | CCCAGGGCCATAGTTTTCCT+AGG | + | chr3_4:53289584-53289603 | Msa0506620:intron | 55.0% |
| CCCTTTCGCGATTTACACGG+AGG | - | chr3_4:53290053-53290072 | None:intergenic | 55.0% | |
| !!! | CCCTGCAGGGGTTTTGAGTT+TGG | + | chr3_4:53290446-53290465 | Msa0506620:intron | 55.0% |
| GCCAAACTCAAAACCCCTGC+AGG | - | chr3_4:53290450-53290469 | None:intergenic | 55.0% | |
| CTGTGCAAAGGTGGGCAAAG+GGG | + | chr3_4:53291226-53291245 | Msa0506620:intron | 55.0% | |
| ! | GGCACTGGGGGTAAGTTAAG+AGG | - | chr3_4:53292078-53292097 | None:intergenic | 55.0% |
| !! | AGGGGCATAATAGGCACTGG+GGG | - | chr3_4:53292090-53292109 | None:intergenic | 55.0% |
| ! | GAGGGGCATAATAGGCACTG+GGG | - | chr3_4:53292091-53292110 | None:intergenic | 55.0% |
| ! | CGAGGGGCATAATAGGCACT+GGG | - | chr3_4:53292092-53292111 | None:intergenic | 55.0% |
| ! | TCGAGGGGCATAATAGGCAC+TGG | - | chr3_4:53292093-53292112 | None:intergenic | 55.0% |
| CTACCTAATATGGGGGGGGG+GGG | - | chr3_4:53286436-53286455 | None:intergenic | 60.0% | |
| !! | GGAAGCCCTCTGGCTTTGCA+AGG | + | chr3_4:53286619-53286638 | Msa0506620:intron | 60.0% |
| ! | GACATCTGGGACCGCAACTG+GGG | - | chr3_4:53288684-53288703 | None:intergenic | 60.0% |
| ! | CGACATCTGGGACCGCAACT+GGG | - | chr3_4:53288685-53288704 | None:intergenic | 60.0% |
| TCCCAGATGTCGCCAACGCA+AGG | + | chr3_4:53288693-53288712 | Msa0506620:CDS | 60.0% | |
| ! | CTCCTTGCGTTGGCGACATC+TGG | - | chr3_4:53288698-53288717 | None:intergenic | 60.0% |
| AGGCATCTCGCGACGTAAGG+TGG | + | chr3_4:53288736-53288755 | Msa0506620:intron | 60.0% | |
| AAGGTGGGCAAAGGGGAGCA+TGG | + | chr3_4:53291233-53291252 | Msa0506620:intron | 60.0% | |
| CAAAGGGGAAGCAGGGAGAG+TGG | - | chr3_4:53291666-53291685 | None:intergenic | 60.0% | |
| ! | TCGGTGACGGTGGTGAGTGG+TGG | - | chr3_4:53285473-53285492 | None:intergenic | 65.0% |
| ! | TCGTCGGTGACGGTGGTGAG+TGG | - | chr3_4:53285476-53285495 | None:intergenic | 65.0% |
| CGCAACCGTAACGCTCAGCG+CGG | - | chr3_4:53285519-53285538 | None:intergenic | 65.0% | |
| TTGCCCCCCCCCCCCATATT+AGG | + | chr3_4:53286430-53286449 | Msa0506620:intron | 65.0% | |
| ! | GCGACATCTGGGACCGCAAC+TGG | - | chr3_4:53288686-53288705 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 53285381 | 53292615 | 53285381 | ID=Msa0506620;Name=Msa0506620 |
| chr3_4 | mRNA | 53285381 | 53292615 | 53285381 | ID=Msa0506620-mRNA-1;Parent=Msa0506620;Name=Msa0506620-mRNA-1;_AED=0.20;_eAED=0.20;_QI=204|1|1|1|1|1|6|310|445 |
| chr3_4 | exon | 53285381 | 53285854 | 53285381 | ID=Msa0506620-mRNA-1:exon:11795;Parent=Msa0506620-mRNA-1 |
| chr3_4 | exon | 53287464 | 53287640 | 53287464 | ID=Msa0506620-mRNA-1:exon:11796;Parent=Msa0506620-mRNA-1 |
| chr3_4 | exon | 53288223 | 53288348 | 53288223 | ID=Msa0506620-mRNA-1:exon:11797;Parent=Msa0506620-mRNA-1 |
| chr3_4 | exon | 53288552 | 53288749 | 53288552 | ID=Msa0506620-mRNA-1:exon:11798;Parent=Msa0506620-mRNA-1 |
| chr3_4 | exon | 53289934 | 53290098 | 53289934 | ID=Msa0506620-mRNA-1:exon:11799;Parent=Msa0506620-mRNA-1 |
| chr3_4 | exon | 53291904 | 53292615 | 53291904 | ID=Msa0506620-mRNA-1:exon:11800;Parent=Msa0506620-mRNA-1 |
| chr3_4 | five_prime_UTR | 53285381 | 53285584 | 53285381 | ID=Msa0506620-mRNA-1:five_prime_utr;Parent=Msa0506620-mRNA-1 |
| chr3_4 | CDS | 53285585 | 53285854 | 53285585 | ID=Msa0506620-mRNA-1:cds;Parent=Msa0506620-mRNA-1 |
| chr3_4 | CDS | 53287464 | 53287640 | 53287464 | ID=Msa0506620-mRNA-1:cds;Parent=Msa0506620-mRNA-1 |
| chr3_4 | CDS | 53288223 | 53288348 | 53288223 | ID=Msa0506620-mRNA-1:cds;Parent=Msa0506620-mRNA-1 |
| chr3_4 | CDS | 53288552 | 53288749 | 53288552 | ID=Msa0506620-mRNA-1:cds;Parent=Msa0506620-mRNA-1 |
| chr3_4 | CDS | 53289934 | 53290098 | 53289934 | ID=Msa0506620-mRNA-1:cds;Parent=Msa0506620-mRNA-1 |
| chr3_4 | CDS | 53291904 | 53292305 | 53291904 | ID=Msa0506620-mRNA-1:cds;Parent=Msa0506620-mRNA-1 |
| chr3_4 | three_prime_UTR | 53292306 | 53292615 | 53292306 | ID=Msa0506620-mRNA-1:three_prime_utr;Parent=Msa0506620-mRNA-1 |
| Gene Sequence |
| Protein sequence |
