AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0137600


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0137600 MtrunA17_Chr1g0209801 95.331 257 12 0 1 257 1 257 5.96e-179 492
Msa0137600 MtrunA17_Chr1g0193661 32.639 144 88 5 78 218 74 211 8.38e-12 63.9
Msa0137600 MtrunA17_Chr4g0066351 32.639 144 88 5 78 218 74 211 9.77e-12 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0137600 AT3G25920.1 70.464 237 58 2 17 243 24 258 2.52e-111 322

Find 80 sgRNAs with CRISPR-Local

Find 426 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACAAATTGGTTTCTTCTTT+AGG 0.200794 1_3:+70129843 Msa0137600:three_prime_UTR
TCGGTTTCGGTTGGACAATT+TGG 0.209684 1_3:+70124946 Msa0137600:CDS
ATCAATCATAATCAACAAAT+TGG 0.244148 1_3:+70129830 Msa0137600:three_prime_UTR
CAAGGAGCGAGTTGTGGTTT+TGG 0.247810 1_3:+70125028 Msa0137600:CDS
TCCTGCAATTCCTCTAAGTT+TGG 0.258498 1_3:-70125134 None:intergenic
CGCTCTTCACTCTGTCAAAA+TGG 0.262848 1_3:-70124637 None:intergenic
CTTCTCTTATTCCTGTTTCC+TGG 0.269459 1_3:+70124697 Msa0137600:CDS
CGGTTTCGGTTGGACAATTT+GGG 0.284648 1_3:+70124947 Msa0137600:CDS
AGCAGCTGCTTCTCGCTTCT+TGG 0.291577 1_3:-70129760 None:intergenic
TTGCATATTTAAACAGAATC+TGG 0.313222 1_3:-70129789 None:intergenic
CGACGATTGCCCAAACTTAG+AGG 0.316218 1_3:+70125124 Msa0137600:CDS
AGATTGATGTGGACATATTT+CGG 0.336463 1_3:-70126162 None:intergenic
CTCTCTCGCTTCTCCATTCA+AGG 0.354654 1_3:+70124725 Msa0137600:CDS
CTCTTTCTTGAACCTGGTTG+TGG 0.358662 1_3:-70124971 None:intergenic
CATCATTGAACAGTGAAATA+AGG 0.365832 1_3:-70130184 None:intergenic
TTAAGACATGGACATAGATA+TGG 0.367880 1_3:-70124845 None:intergenic
GAGAAAACTTCAATACAAAA+AGG 0.369347 1_3:-70129906 None:intergenic
TGTTCCATCACTGTGATTCC+TGG 0.369456 1_3:+70129675 Msa0137600:CDS
CCCAAACTTAGAGGAATTGC+AGG 0.376415 1_3:+70125133 Msa0137600:CDS
TGATTCCTGGCCGTAAGAAA+TGG 0.380224 1_3:+70129688 Msa0137600:CDS
AGGTGCATACCGAAAGTTCT+TGG 0.394725 1_3:+70130154 Msa0137600:three_prime_UTR
CCTGCAATTCCTCTAAGTTT+GGG 0.397805 1_3:-70125133 None:intergenic
CTCCTTCGCTGATGTGGAAA+AGG 0.406202 1_3:-70129634 None:intergenic
GGAAATAGAAATACCTTGAA+TGG 0.411477 1_3:-70124738 None:intergenic
CTCTGTCAAAATGGAACAAA+CGG 0.412322 1_3:-70124628 None:intergenic
TTTGCTCTCTTTCTTGAACC+TGG 0.419614 1_3:-70124977 None:intergenic
TAATAAGGCTGCTTCTGCTT+CGG 0.436199 1_3:+70124901 Msa0137600:CDS
GGCACCGAACCAAGAACTTT+CGG 0.440027 1_3:-70130163 None:intergenic
AAGAAAGAGAGCAAAGAGAA+AGG 0.443452 1_3:+70124985 Msa0137600:CDS
AGAGAGGGTAACCAGGAAAC+AGG 0.445145 1_3:-70124708 None:intergenic
ATGGCTTAACCCATTTCTTA+CGG 0.452810 1_3:-70129698 None:intergenic
AACCAGCAGGTGAAAATGTT+CGG 0.456863 1_3:+70124927 Msa0137600:CDS
CGATTTGTGCTGGAAACCTT+TGG 0.460118 1_3:+70130038 Msa0137600:three_prime_UTR
AGAAGGGGAAGAGGTGTCTC+TGG 0.461261 1_3:+70126212 Msa0137600:CDS
CAGGTGAAAATGTTCGGTTT+CGG 0.473561 1_3:+70124933 Msa0137600:CDS
GTTTGCTTGTCGATTTGTGC+TGG 0.476311 1_3:+70130028 Msa0137600:three_prime_UTR
GACAATTTGGGTCCACAACC+AGG 0.479320 1_3:+70124959 Msa0137600:CDS
AGAAAGAGAGCAAAGAGAAA+GGG 0.484644 1_3:+70124986 Msa0137600:CDS
TGAAAATGTTCGGTTTCGGT+TGG 0.487169 1_3:+70124937 Msa0137600:CDS
AGAAGCGAGAGAGGGTAACC+AGG 0.489358 1_3:-70124715 None:intergenic
AAGTTTCTCCTTCGCTGATG+TGG 0.489671 1_3:-70129640 None:intergenic
TTAACCCATTTCTTACGGCC+AGG 0.492636 1_3:-70129693 None:intergenic
GAAATATGTCCACATCAATC+TGG 0.495258 1_3:+70126164 Msa0137600:CDS
GGAACGGAAACTTCTATTGA+AGG 0.496485 1_3:+70126275 Msa0137600:CDS
AGTTTCCGTTCCCTTCCTGA+TGG 0.497026 1_3:-70126264 None:intergenic
ACATAATAAGGTATGCATGC+TGG 0.501018 1_3:+70126135 Msa0137600:intron
TCTGCTTCGGTGAAACCAGC+AGG 0.507750 1_3:+70124914 Msa0137600:CDS
AGAGCAAAGAGAAAGGGAAG+AGG 0.509714 1_3:+70124992 Msa0137600:CDS
GATTCCTGGCCGTAAGAAAT+GGG 0.511756 1_3:+70129689 Msa0137600:CDS
CATACCGAAAGTTCTTGGTT+CGG 0.517088 1_3:+70130159 Msa0137600:three_prime_UTR
GTTATGTAGTTTCTTGTACA+AGG 0.522578 1_3:+70130134 Msa0137600:three_prime_UTR
GAAGATGCTGGATTTCAAGA+AGG 0.525528 1_3:+70126195 Msa0137600:CDS
AAGGAGAAACTTGAGTCTGC+TGG 0.526406 1_3:+70129651 Msa0137600:CDS
CTGGTAGACATAGAAGATGC+TGG 0.527862 1_3:+70126183 Msa0137600:CDS
AAACGTGTGATTAACCCATC+AGG 0.531753 1_3:+70126249 Msa0137600:CDS
AAGATGCTGGATTTCAAGAA+GGG 0.537870 1_3:+70126196 Msa0137600:CDS
GTTTCCGTTCCCTTCCTGAT+GGG 0.539207 1_3:-70126263 None:intergenic
AGAGGTATTGCCGCAGGACA+AGG 0.557884 1_3:+70125010 Msa0137600:CDS
TTGGGCAATCGTCGATAAAG+TGG 0.564517 1_3:-70125115 None:intergenic
AAGAAGTTGACAATAAAAGC+TGG 0.573815 1_3:+70129609 Msa0137600:CDS
GCAGGACAAGGAGCGAGTTG+TGG 0.577933 1_3:+70125022 Msa0137600:CDS
TGGATTTCAAGAAGGGGAAG+AGG 0.578835 1_3:+70126203 Msa0137600:CDS
GTAGGGAAATGTGAAAACCT+TGG 0.584114 1_3:+70124814 Msa0137600:intron
AAGGGAAGAGGTATTGCCGC+AGG 0.588347 1_3:+70125004 Msa0137600:CDS
TTGTGCTGGAAACCTTTGGT+AGG 0.590784 1_3:+70130042 Msa0137600:three_prime_UTR
CTTGAATGGAGAAGCGAGAG+AGG 0.590843 1_3:-70124724 None:intergenic
GGTGTCTCTGGAGACACTGA+CGG 0.598433 1_3:+70126224 Msa0137600:CDS
ATTAAACACACTCCTACCAA+AGG 0.609468 1_3:-70130054 None:intergenic
GTGTGATTAACCCATCAGGA+AGG 0.611754 1_3:+70126253 Msa0137600:CDS
TTGAATGGAGAAGCGAGAGA+GGG 0.622388 1_3:-70124723 None:intergenic
CTTCTTGGCGAAGTATTCGT+CGG 0.627986 1_3:-70129745 None:intergenic
ACGGCCAGGAATCACAGTGA+TGG 0.630385 1_3:-70129679 None:intergenic
TGTGATTAACCCATCAGGAA+GGG 0.634878 1_3:+70126254 Msa0137600:CDS
TCTGGACCTGGTATCATGAG+AGG 0.634957 1_3:+70125073 Msa0137600:CDS
TCAAAACCTCTCATGATACC+AGG 0.646172 1_3:-70125079 None:intergenic
CTATGTCTACCAGATTGATG+TGG 0.650882 1_3:-70126173 None:intergenic
TTAACCCATCAGGAAGGGAA+CGG 0.658603 1_3:+70126259 Msa0137600:CDS
AGATGCTGGATTTCAAGAAG+GGG 0.662527 1_3:+70126197 Msa0137600:CDS
ACAACTCGCTCCTTGTCCTG+CGG 0.686055 1_3:-70125020 None:intergenic
AAACTTAGAGGAATTGCAGG+AGG 0.696930 1_3:+70125136 Msa0137600:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTAATTAAATGTACATTTA+GGG - chr1_3:70127026-70127045 None:intergenic 10.0%
!!! TTTTAATTAAATGTACATTT+AGG - chr1_3:70127027-70127046 None:intergenic 10.0%
!!! TACACAATATATTTTTAAAA+AGG + chr1_3:70129524-70129543 Msa0137600:intron 10.0%
!! AATTTCAACAATAAAACAAT+AGG - chr1_3:70125193-70125212 None:intergenic 15.0%
!! GAATTATATTAGGATAATTT+AGG + chr1_3:70125578-70125597 Msa0137600:intron 15.0%
!!! AAAAGCAATTATTTTATGAA+AGG + chr1_3:70126003-70126022 Msa0137600:intron 15.0%
!!! GATTATTTTAGATTAACTAT+AGG - chr1_3:70126819-70126838 None:intergenic 15.0%
!!! TATTAATCTTTTTCACTTTA+AGG + chr1_3:70128428-70128447 Msa0137600:intron 15.0%
!!! TCTAATATCATTTAGAATTT+TGG + chr1_3:70128893-70128912 Msa0137600:intron 15.0%
!!! TTCTTTTCAAGATATTTTAA+TGG - chr1_3:70129988-70130007 None:intergenic 15.0%
!!! GTGTGTTTAATTTTATAATA+AGG + chr1_3:70130066-70130085 Msa0137600:three_prime_UTR 15.0%
!! TATGAGAAAATGAAATGAAA+TGG - chr1_3:70124762-70124781 None:intergenic 20.0%
!!! ACCATTGATTTTATATTTGT+AGG + chr1_3:70124796-70124815 Msa0137600:intron 20.0%
!!! CCATTGATTTTATATTTGTA+GGG + chr1_3:70124797-70124816 Msa0137600:intron 20.0%
!!! GAAAATAATGTTTTCAACTA+TGG + chr1_3:70125230-70125249 Msa0137600:intron 20.0%
!! AACAAAACATCGTAAAAAAA+GGG - chr1_3:70125506-70125525 None:intergenic 20.0%
!! TAACAAAACATCGTAAAAAA+AGG - chr1_3:70125507-70125526 None:intergenic 20.0%
!!! GGATTTTGTTGAATTATATT+AGG + chr1_3:70125568-70125587 Msa0137600:intron 20.0%
!!! CTTTGAAAATCTACATATTA+GGG - chr1_3:70125792-70125811 None:intergenic 20.0%
!!! TCTTTGAAAATCTACATATT+AGG - chr1_3:70125793-70125812 None:intergenic 20.0%
!!! TTCACTTTTAAAAACAAATG+AGG + chr1_3:70126405-70126424 Msa0137600:intron 20.0%
!! TTTCATATTATGCCTTTAAT+CGG + chr1_3:70126519-70126538 Msa0137600:intron 20.0%
!! AAAGAGTTAAAGTTAGTTAA+TGG + chr1_3:70126676-70126695 Msa0137600:intron 20.0%
!!! TATTTTCAACAAGAGAAATA+AGG + chr1_3:70126855-70126874 Msa0137600:intron 20.0%
!! AAATATCAATTTCTGTCTAT+TGG + chr1_3:70127044-70127063 Msa0137600:intron 20.0%
!! TACCAGATAGAATATTTAAA+AGG + chr1_3:70127464-70127483 Msa0137600:intron 20.0%
!! ACCAGATAGAATATTTAAAA+GGG + chr1_3:70127465-70127484 Msa0137600:intron 20.0%
!! GAGAATTCAAGAATATAAAA+TGG + chr1_3:70127612-70127631 Msa0137600:intron 20.0%
!!! ATTTCTAAAGTGATATTTAG+CGG + chr1_3:70129165-70129184 Msa0137600:intron 20.0%
!! ATCAATCATAATCAACAAAT+TGG + chr1_3:70129830-70129849 Msa0137600:three_prime_UTR 20.0%
!!! TTATCAAAAAAGGTGTAATT+TGG + chr1_3:70130104-70130123 Msa0137600:three_prime_UTR 20.0%
! CCCTACAAATATAAAATCAA+TGG - chr1_3:70124800-70124819 None:intergenic 25.0%
! TTATTAACAACAAAAACACG+AGG - chr1_3:70124887-70124906 None:intergenic 25.0%
!!! TCGTGTTTTTGTTGTTAATA+AGG + chr1_3:70124886-70124905 Msa0137600:CDS 25.0%
!! AATAATGTTTTCAACTATGG+TGG + chr1_3:70125233-70125252 Msa0137600:intron 25.0%
! TTGACATTGTAATTCAATGA+TGG + chr1_3:70125266-70125285 Msa0137600:intron 25.0%
! TTAGTCTATATACTACCAAA+TGG + chr1_3:70125368-70125387 Msa0137600:intron 25.0%
! TAGTCTATATACTACCAAAT+GGG + chr1_3:70125369-70125388 Msa0137600:intron 25.0%
! TCATTAGTAGGAAAAAACAA+TGG + chr1_3:70125645-70125664 Msa0137600:intron 25.0%
! CATTTCAAGATGTCAATAAA+GGG - chr1_3:70125830-70125849 None:intergenic 25.0%
!!! TTTTGAAATGAAATCATGGA+AGG - chr1_3:70125987-70126006 None:intergenic 25.0%
!!! TTGCTTTTGAAATGAAATCA+TGG - chr1_3:70125991-70126010 None:intergenic 25.0%
!!! CTTTTAAAAACAAATGAGGA+TGG + chr1_3:70126409-70126428 Msa0137600:intron 25.0%
! AGAAGTCTTTCTTGATATAT+GGG - chr1_3:70126451-70126470 None:intergenic 25.0%
!! TAAGTTCAAACGCAATATTT+TGG + chr1_3:70126591-70126610 Msa0137600:intron 25.0%
!! TGAATTTGAAACTGTAAAGT+TGG + chr1_3:70126631-70126650 Msa0137600:intron 25.0%
!! TAAAGTTAGTTAATGGATGT+TGG + chr1_3:70126683-70126702 Msa0137600:intron 25.0%
!! AAAGTTAGTTAATGGATGTT+GGG + chr1_3:70126684-70126703 Msa0137600:intron 25.0%
! CTCTTGTTGAAAATATGTTT+AGG - chr1_3:70126850-70126869 None:intergenic 25.0%
! TGTTGTCTATAAATAAGAAG+AGG + chr1_3:70126880-70126899 Msa0137600:intron 25.0%
! GTTGTCTATAAATAAGAAGA+GGG + chr1_3:70126881-70126900 Msa0137600:intron 25.0%
!!! TCTTGTCATTTTAGTATAGT+CGG + chr1_3:70126927-70126946 Msa0137600:intron 25.0%
! GTATATCATTGAAGATTATG+TGG + chr1_3:70127094-70127113 Msa0137600:intron 25.0%
!!! GAGGTATTTTCATATGAAAT+AGG + chr1_3:70127212-70127231 Msa0137600:intron 25.0%
!! TTTTCATATGAAATAGGTGT+TGG + chr1_3:70127218-70127237 Msa0137600:intron 25.0%
! TTTCATATGAAATAGGTGTT+GGG + chr1_3:70127219-70127238 Msa0137600:intron 25.0%
! TGATGTGTCATAATGTTATT+AGG + chr1_3:70127324-70127343 Msa0137600:intron 25.0%
!! ACCCTTTTAAATATTCTATC+TGG - chr1_3:70127469-70127488 None:intergenic 25.0%
!! TTAAAAGGGTTTTTCTTGAA+AGG + chr1_3:70127479-70127498 Msa0137600:intron 25.0%
! AATAAAAAAGATTACCGAAC+AGG + chr1_3:70127717-70127736 Msa0137600:intron 25.0%
! ATAAAAAAGATTACCGAACA+GGG + chr1_3:70127718-70127737 Msa0137600:intron 25.0%
! AAAAGGAAAAGATGTCTTTA+TGG + chr1_3:70127792-70127811 Msa0137600:intron 25.0%
! AAAGGAAAAGATGTCTTTAT+GGG + chr1_3:70127793-70127812 Msa0137600:intron 25.0%
! TGTCAGATTCTAAACATATT+TGG - chr1_3:70128024-70128043 None:intergenic 25.0%
!!! TCTTTTTCACTTTAAGGATA+AGG + chr1_3:70128434-70128453 Msa0137600:intron 25.0%
!!! TCTTGTATTTTTAATAGAGC+TGG + chr1_3:70128592-70128611 Msa0137600:intron 25.0%
!!! CTTGTATTTTTAATAGAGCT+GGG + chr1_3:70128593-70128612 Msa0137600:intron 25.0%
!!! AATTCTATTTCTAAGTTGGT+TGG - chr1_3:70128647-70128666 None:intergenic 25.0%
!! TTCGTAGATATGAAAAGTAT+TGG - chr1_3:70129133-70129152 None:intergenic 25.0%
!! AATATTTTCCTGAGTTTATG+AGG - chr1_3:70129370-70129389 None:intergenic 25.0%
! CAATTTCAAACAACTTATAC+AGG + chr1_3:70129407-70129426 Msa0137600:intron 25.0%
! TTGCATATTTAAACAGAATC+TGG - chr1_3:70129792-70129811 None:intergenic 25.0%
!! AACAAATTGGTTTCTTCTTT+AGG + chr1_3:70129843-70129862 Msa0137600:three_prime_UTR 25.0%
! GAGAAAACTTCAATACAAAA+AGG - chr1_3:70129909-70129928 None:intergenic 25.0%
!! TTTTGTATTGAAGTTTTCTC+TGG + chr1_3:70129909-70129928 Msa0137600:three_prime_UTR 25.0%
GGAAATAGAAATACCTTGAA+TGG - chr1_3:70124741-70124760 None:intergenic 30.0%
TTAAGACATGGACATAGATA+TGG - chr1_3:70124848-70124867 None:intergenic 30.0%
!!! ATTCGCTGAATTTTAAGACA+TGG - chr1_3:70124860-70124879 None:intergenic 30.0%
! AATATAATTTGCCCGCTAAT+AGG + chr1_3:70125477-70125496 Msa0137600:intron 30.0%
! TAATTTAGGATCCTACTGTT+AGG + chr1_3:70125592-70125611 Msa0137600:intron 30.0%
! AATTTAGGATCCTACTGTTA+GGG + chr1_3:70125593-70125612 Msa0137600:intron 30.0%
ATGACTTTCAAATGTGATGT+AGG - chr1_3:70125726-70125745 None:intergenic 30.0%
GATATATACAACAGCATATC+CGG - chr1_3:70125770-70125789 None:intergenic 30.0%
CCATTTCAAGATGTCAATAA+AGG - chr1_3:70125831-70125850 None:intergenic 30.0%
CCTTTATTGACATCTTGAAA+TGG + chr1_3:70125828-70125847 Msa0137600:intron 30.0%
TTATTGTCTGAAGAGAATCA+TGG + chr1_3:70125854-70125873 Msa0137600:intron 30.0%
!! AAATTTAGGTATTGGAAGCT+TGG - chr1_3:70125894-70125913 None:intergenic 30.0%
AGGAAGAGAAATTTAGGTAT+TGG - chr1_3:70125902-70125921 None:intergenic 30.0%
AATGAAATCATGGAAGGATA+TGG - chr1_3:70125981-70126000 None:intergenic 30.0%
TTTCTTTCATTCTTTGTCGT+AGG + chr1_3:70126028-70126047 Msa0137600:intron 30.0%
AGATTGATGTGGACATATTT+CGG - chr1_3:70126165-70126184 None:intergenic 30.0%
!! ACACATTACTTGTTGGTTTA+TGG + chr1_3:70126299-70126318 Msa0137600:intron 30.0%
ACATGTAAGACAACAACTAA+GGG - chr1_3:70126340-70126359 None:intergenic 30.0%
AACATGTAAGACAACAACTA+AGG - chr1_3:70126341-70126360 None:intergenic 30.0%
! ATTGTTTTCATGATGTCTAG+AGG + chr1_3:70126371-70126390 Msa0137600:intron 30.0%
GAAGTCTTTCTTGATATATG+GGG - chr1_3:70126450-70126469 None:intergenic 30.0%
CAGAAGTCTTTCTTGATATA+TGG - chr1_3:70126452-70126471 None:intergenic 30.0%
ACTTTATTCACGATAGACAA+GGG - chr1_3:70126484-70126503 None:intergenic 30.0%
AACTTTATTCACGATAGACA+AGG - chr1_3:70126485-70126504 None:intergenic 30.0%
AACCAAAATTCTCCGATTAA+AGG - chr1_3:70126534-70126553 None:intergenic 30.0%
CTGTAAAGTTGGAATATAAG+AGG + chr1_3:70126642-70126661 Msa0137600:intron 30.0%
ACTTTAACTCTTTCAACCAA+CGG - chr1_3:70126669-70126688 None:intergenic 30.0%
TTTCTTTGAGCCTTACAAAA+CGG - chr1_3:70126755-70126774 None:intergenic 30.0%
TATAAATAAGAAGAGGGCTT+AGG + chr1_3:70126887-70126906 Msa0137600:intron 30.0%
!!! CTTGTCATTTTAGTATAGTC+GGG + chr1_3:70126928-70126947 Msa0137600:intron 30.0%
!!! TTGTCATTTTAGTATAGTCG+GGG + chr1_3:70126929-70126948 Msa0137600:intron 30.0%
TTAGGGAAAATTTCCTTGTA+TGG - chr1_3:70127009-70127028 None:intergenic 30.0%
ATTTCTGTCTATTGGTATCA+AGG + chr1_3:70127052-70127071 Msa0137600:intron 30.0%
! AATAAGAATAAAGGCACACA+TGG + chr1_3:70127121-70127140 Msa0137600:intron 30.0%
! TAACCCATTTGGTATTTTGT+TGG + chr1_3:70127370-70127389 Msa0137600:intron 30.0%
! AACCCATTTGGTATTTTGTT+GGG + chr1_3:70127371-70127390 Msa0137600:intron 30.0%
TACCCAACAAAATACCAAAT+GGG - chr1_3:70127376-70127395 None:intergenic 30.0%
ATACCCAACAAAATACCAAA+TGG - chr1_3:70127377-70127396 None:intergenic 30.0%
AAATGAGTGAAGAAAAGAGT+CGG + chr1_3:70127567-70127586 Msa0137600:intron 30.0%
AAATGGAGAAGTAAGAAGAA+AGG + chr1_3:70127629-70127648 Msa0137600:intron 30.0%
AAGAAGAAAGGTGAAAGAAA+TGG + chr1_3:70127641-70127660 Msa0137600:intron 30.0%
TAAAAAAGATTACCGAACAG+GGG + chr1_3:70127719-70127738 Msa0137600:intron 30.0%
CAGAGTTTCACAATTTGTAA+TGG - chr1_3:70127916-70127935 None:intergenic 30.0%
!! TAAACATGAAGATGGATTGT+TGG + chr1_3:70128123-70128142 Msa0137600:intron 30.0%
TGTTGGATTGTATTTCAAAG+AGG + chr1_3:70128140-70128159 Msa0137600:intron 30.0%
AAGACTTCCTTTATAAGAAG+AGG + chr1_3:70128208-70128227 Msa0137600:intron 30.0%
GTATCTACCTCTTCTTATAA+AGG - chr1_3:70128218-70128237 None:intergenic 30.0%
TGCTCTACATGAATAATACT+TGG - chr1_3:70128250-70128269 None:intergenic 30.0%
AACTACTACATCAAGCTAAA+AGG + chr1_3:70128347-70128366 Msa0137600:intron 30.0%
ACTACTACATCAAGCTAAAA+GGG + chr1_3:70128348-70128367 Msa0137600:intron 30.0%
TGCTGTCTATATATAAGAAG+AGG + chr1_3:70128555-70128574 Msa0137600:intron 30.0%
TATATATAAGAAGAGGCTGA+AGG + chr1_3:70128562-70128581 Msa0137600:intron 30.0%
!! GAGCAATTCTATTTCTAAGT+TGG - chr1_3:70128651-70128670 None:intergenic 30.0%
CAAACATGCATAAACTTCTA+GGG + chr1_3:70128796-70128815 Msa0137600:intron 30.0%
! TCTAGCATCATGAATTTTGT+TGG + chr1_3:70129231-70129250 Msa0137600:intron 30.0%
AGAAGAGCTCTTTCAAATAA+TGG - chr1_3:70129342-70129361 None:intergenic 30.0%
ATTATTTGAAAGAGCTCTTC+TGG + chr1_3:70129341-70129360 Msa0137600:intron 30.0%
ACTTCTAATTAGTCATGCAT+TGG + chr1_3:70129451-70129470 Msa0137600:intron 30.0%
CTTCTAATTAGTCATGCATT+GGG + chr1_3:70129452-70129471 Msa0137600:intron 30.0%
!! AATAATAGTTTGTTGTGCTC+TGG + chr1_3:70129556-70129575 Msa0137600:intron 30.0%
AAGAAGTTGACAATAAAAGC+TGG + chr1_3:70129609-70129628 Msa0137600:CDS 30.0%
!!! CCTTTTTTGATAAAGACACA+AGG - chr1_3:70130097-70130116 None:intergenic 30.0%
CCTTGTGTCTTTATCAAAAA+AGG + chr1_3:70130094-70130113 Msa0137600:three_prime_UTR 30.0%
GTTATGTAGTTTCTTGTACA+AGG + chr1_3:70130134-70130153 Msa0137600:three_prime_UTR 30.0%
CATCATTGAACAGTGAAATA+AGG - chr1_3:70130187-70130206 None:intergenic 30.0%
CTCTGTCAAAATGGAACAAA+CGG - chr1_3:70124631-70124650 None:intergenic 35.0%
!! TAGATATGGTTTTGCTACCA+AGG - chr1_3:70124834-70124853 None:intergenic 35.0%
AAGAAAGAGAGCAAAGAGAA+AGG + chr1_3:70124985-70125004 Msa0137600:CDS 35.0%
AGAAAGAGAGCAAAGAGAAA+GGG + chr1_3:70124986-70125005 Msa0137600:CDS 35.0%
ATCTCTTCTTACACAACACT+TGG + chr1_3:70125160-70125179 Msa0137600:intron 35.0%
TCTCTTCTTACACAACACTT+GGG + chr1_3:70125161-70125180 Msa0137600:intron 35.0%
AAAAAAGGGCAACCTATTAG+CGG - chr1_3:70125492-70125511 None:intergenic 35.0%
! TGTGAAGCATTATGATGCTA+CGG - chr1_3:70125536-70125555 None:intergenic 35.0%
TAGCATCATAATGCTTCACA+TGG + chr1_3:70125536-70125555 Msa0137600:intron 35.0%
TGCTTCACATGGAGTTTAAA+TGG + chr1_3:70125547-70125566 Msa0137600:intron 35.0%
CTACATGTAGCATCATTAGT+AGG + chr1_3:70125633-70125652 Msa0137600:intron 35.0%
TAGATGAGAATTGTGATTCC+TGG + chr1_3:70125669-70125688 Msa0137600:intron 35.0%
TACATAATCAATCTGCAACC+AGG - chr1_3:70125690-70125709 None:intergenic 35.0%
TCATGAAGTATGCCTATTAC+AGG + chr1_3:70125742-70125761 Msa0137600:intron 35.0%
TGAAGAGAATCATGGCATTA+TGG + chr1_3:70125862-70125881 Msa0137600:intron 35.0%
GAACTGAGGAAGAGAAATTT+AGG - chr1_3:70125908-70125927 None:intergenic 35.0%
GTCAAGCATAATAAGAACTG+AGG - chr1_3:70125922-70125941 None:intergenic 35.0%
GAAGGATATGGAAGAATAAG+GGG - chr1_3:70125969-70125988 None:intergenic 35.0%
GGAAGGATATGGAAGAATAA+GGG - chr1_3:70125970-70125989 None:intergenic 35.0%
TGGAAGGATATGGAAGAATA+AGG - chr1_3:70125971-70125990 None:intergenic 35.0%
GTATATGCATAAATCTCGCT+TGG + chr1_3:70126070-70126089 Msa0137600:intron 35.0%
ACATAATAAGGTATGCATGC+TGG + chr1_3:70126135-70126154 Msa0137600:intron 35.0%
GAAATATGTCCACATCAATC+TGG + chr1_3:70126164-70126183 Msa0137600:CDS 35.0%
AAGATGCTGGATTTCAAGAA+GGG + chr1_3:70126196-70126215 Msa0137600:CDS 35.0%
! TGAAGGTACACATTACTTGT+TGG + chr1_3:70126292-70126311 Msa0137600:intron 35.0%
! TTCTTGATATATGGGGTACT+AGG - chr1_3:70126443-70126462 None:intergenic 35.0%
CAAGAAAGACTTCTGATATG+AGG + chr1_3:70126457-70126476 Msa0137600:intron 35.0%
! TGCCTTTAATCGGAGAATTT+TGG + chr1_3:70126529-70126548 Msa0137600:intron 35.0%
!! GTTCAAACGCAATATTTTGG+TGG + chr1_3:70126594-70126613 Msa0137600:intron 35.0%
! ATAATCGAGTCCGTTTTGTA+AGG + chr1_3:70126742-70126761 Msa0137600:intron 35.0%
!!! TGTCATTTTAGTATAGTCGG+GGG + chr1_3:70126930-70126949 Msa0137600:intron 35.0%
GGAAAACTACAGAACTTCAA+AGG - chr1_3:70126988-70127007 None:intergenic 35.0%
! GTTCTGTAGTTTTCCATACA+AGG + chr1_3:70126993-70127012 Msa0137600:intron 35.0%
TGTGGCGTGAATAAGAATAA+AGG + chr1_3:70127112-70127131 Msa0137600:intron 35.0%
GTGAGGAAGTAATTTCAGTT+GGG + chr1_3:70127156-70127175 Msa0137600:intron 35.0%
TGAGGAAGTAATTTCAGTTG+GGG + chr1_3:70127157-70127176 Msa0137600:intron 35.0%
CAAGGATCAATTTGACATAC+AGG + chr1_3:70127423-70127442 Msa0137600:intron 35.0%
ATCAATTTGACATACAGGTC+AGG + chr1_3:70127428-70127447 Msa0137600:intron 35.0%
! AAGGGTTTTTCTTGAAAGGA+CGG + chr1_3:70127483-70127502 Msa0137600:intron 35.0%
ACTATTGGAGGAGATGAATT+TGG + chr1_3:70127534-70127553 Msa0137600:intron 35.0%
GAAATGGAGTGAAATGACTA+TGG + chr1_3:70127657-70127676 Msa0137600:intron 35.0%
! CTTTTCATTCCACTTCTGTT+AGG - chr1_3:70127777-70127796 None:intergenic 35.0%
CTAACAGAAGTGGAATGAAA+AGG + chr1_3:70127775-70127794 Msa0137600:intron 35.0%
TGTCACATCATTGTTGAATG+CGG + chr1_3:70127851-70127870 Msa0137600:intron 35.0%
!! TTTGTACAAGAGCACACTTT+TGG - chr1_3:70127883-70127902 None:intergenic 35.0%
! AAAAGTGTGCTCTTGTACAA+AGG + chr1_3:70127882-70127901 Msa0137600:intron 35.0%
AATCTGACAACTTCAACCTT+TGG + chr1_3:70128035-70128054 Msa0137600:intron 35.0%
ATCTGACAACTTCAACCTTT+GGG + chr1_3:70128036-70128055 Msa0137600:intron 35.0%
TTCATGTTTAGCAACAGCAT+AGG - chr1_3:70128113-70128132 None:intergenic 35.0%
ATTGATGAGAGGCAGATTAA+TGG + chr1_3:70128183-70128202 Msa0137600:intron 35.0%
TTGATACACCTGTTAGTTGA+AGG + chr1_3:70128477-70128496 Msa0137600:intron 35.0%
TGAGTTAAGCTTGTAGTTTG+TGG + chr1_3:70128504-70128523 Msa0137600:intron 35.0%
! GAGTTAAGCTTGTAGTTTGT+GGG + chr1_3:70128505-70128524 Msa0137600:intron 35.0%
!! TTTCTAAGTTGGTTGGAAGA+GGG - chr1_3:70128640-70128659 None:intergenic 35.0%
!! ATTTCTAAGTTGGTTGGAAG+AGG - chr1_3:70128641-70128660 None:intergenic 35.0%
! TTTTCCTTCACAAGGCTTAT+AGG - chr1_3:70128729-70128748 None:intergenic 35.0%
!!! GCATGTTATTTTCCTTCACA+AGG - chr1_3:70128737-70128756 None:intergenic 35.0%
GTGAAGGAAAATAACATGCT+CGG + chr1_3:70128738-70128757 Msa0137600:intron 35.0%
GCAAACATGCATAAACTTCT+AGG + chr1_3:70128795-70128814 Msa0137600:intron 35.0%
GCATTCTTTACCTTACAAAC+TGG - chr1_3:70128938-70128957 None:intergenic 35.0%
AAAGAAACTGTAGCATGTTC+TGG + chr1_3:70129191-70129210 Msa0137600:intron 35.0%
ACATATAATACGCTACCAAG+TGG + chr1_3:70129283-70129302 Msa0137600:intron 35.0%
CATATAATACGCTACCAAGT+GGG + chr1_3:70129284-70129303 Msa0137600:intron 35.0%
ATGGCTTAACCCATTTCTTA+CGG - chr1_3:70129701-70129720 None:intergenic 35.0%
ATTAAACACACTCCTACCAA+AGG - chr1_3:70130057-70130076 None:intergenic 35.0%
!! CATTTTGACAGAGTGAAGAG+CGG + chr1_3:70124638-70124657 Msa0137600:five_prime_UTR 40.0%
CTTCTCTTATTCCTGTTTCC+TGG + chr1_3:70124697-70124716 Msa0137600:CDS 40.0%
GTAGGGAAATGTGAAAACCT+TGG + chr1_3:70124814-70124833 Msa0137600:intron 40.0%
TAATAAGGCTGCTTCTGCTT+CGG + chr1_3:70124901-70124920 Msa0137600:CDS 40.0%
AACCAGCAGGTGAAAATGTT+CGG + chr1_3:70124927-70124946 Msa0137600:CDS 40.0%
CAGGTGAAAATGTTCGGTTT+CGG + chr1_3:70124933-70124952 Msa0137600:CDS 40.0%
TGAAAATGTTCGGTTTCGGT+TGG + chr1_3:70124937-70124956 Msa0137600:CDS 40.0%
TTTGCTCTCTTTCTTGAACC+TGG - chr1_3:70124980-70124999 None:intergenic 40.0%
!!! AGTTGTGGTTTTGGAATGAG+AGG + chr1_3:70125037-70125056 Msa0137600:CDS 40.0%
AGAGGTCAAAAATCTCGATC+TGG + chr1_3:70125055-70125074 Msa0137600:CDS 40.0%
TCAAAACCTCTCATGATACC+AGG - chr1_3:70125082-70125101 None:intergenic 40.0%
!! GGTATCATGAGAGGTTTTGA+AGG + chr1_3:70125082-70125101 Msa0137600:CDS 40.0%
!!! ATCATGAGAGGTTTTGAAGG+TGG + chr1_3:70125085-70125104 Msa0137600:CDS 40.0%
CCTGCAATTCCTCTAAGTTT+GGG - chr1_3:70125136-70125155 None:intergenic 40.0%
TCCTGCAATTCCTCTAAGTT+TGG - chr1_3:70125137-70125156 None:intergenic 40.0%
AAACTTAGAGGAATTGCAGG+AGG + chr1_3:70125136-70125155 Msa0137600:CDS 40.0%
AAAAAGGGCAACCTATTAGC+GGG - chr1_3:70125491-70125510 None:intergenic 40.0%
CTATGTCTACCAGATTGATG+TGG - chr1_3:70126176-70126195 None:intergenic 40.0%
GAAGATGCTGGATTTCAAGA+AGG + chr1_3:70126195-70126214 Msa0137600:CDS 40.0%
AGATGCTGGATTTCAAGAAG+GGG + chr1_3:70126197-70126216 Msa0137600:CDS 40.0%
AAACGTGTGATTAACCCATC+AGG + chr1_3:70126249-70126268 Msa0137600:CDS 40.0%
TGTGATTAACCCATCAGGAA+GGG + chr1_3:70126254-70126273 Msa0137600:CDS 40.0%
GGAACGGAAACTTCTATTGA+AGG + chr1_3:70126275-70126294 Msa0137600:CDS 40.0%
TTGGAATATAAGAGGTCCGT+TGG + chr1_3:70126650-70126669 Msa0137600:intron 40.0%
GATTATGCGGTTGAGAAACA+CGG - chr1_3:70126728-70126747 None:intergenic 40.0%
! ACAAAACGGACTCGATTATG+CGG - chr1_3:70126741-70126760 None:intergenic 40.0%
ATATACTCCCAACTCCTTGA+TGG - chr1_3:70127080-70127099 None:intergenic 40.0%
GGTGAGGAAGTAATTTCAGT+TGG + chr1_3:70127155-70127174 Msa0137600:intron 40.0%
GTTGGATCAACAAGTTTGAG+AGG + chr1_3:70127193-70127212 Msa0137600:intron 40.0%
!! CATATGAAATAGGTGTTGGG+AGG + chr1_3:70127222-70127241 Msa0137600:intron 40.0%
ATAAGTCATCTGTGTAGCCA+TGG + chr1_3:70127254-70127273 Msa0137600:intron 40.0%
AAACAAAGCTTGTCCTTCCA+TGG - chr1_3:70127274-70127293 None:intergenic 40.0%
TTATGACACATCACCCAAGT+CGG - chr1_3:70127317-70127336 None:intergenic 40.0%
!! AATGGGTTACGAATCATGGA+TGG - chr1_3:70127359-70127378 None:intergenic 40.0%
TCCATGATTCGTAACCCATT+TGG + chr1_3:70127359-70127378 Msa0137600:intron 40.0%
!! ACCAAATGGGTTACGAATCA+TGG - chr1_3:70127363-70127382 None:intergenic 40.0%
TTTGTTGGGTATGAAGCAAG+AGG + chr1_3:70127385-70127404 Msa0137600:intron 40.0%
TTGTTGGGTATGAAGCAAGA+GGG + chr1_3:70127386-70127405 Msa0137600:intron 40.0%
AAATGACTATGGCATGGAAG+TGG + chr1_3:70127668-70127687 Msa0137600:intron 40.0%
! TTTTTATTCTCCTCTGCCCT+AGG - chr1_3:70127705-70127724 None:intergenic 40.0%
GGAAAAGATGTCTTTATGGG+TGG + chr1_3:70127796-70127815 Msa0137600:intron 40.0%
GAACCAATGAAGAACAAAGC+TGG + chr1_3:70127818-70127837 Msa0137600:intron 40.0%
!! CTTCCAGCTTTGTTCTTCAT+TGG - chr1_3:70127824-70127843 None:intergenic 40.0%
CATTAGGTCTTCATGCATGT+AGG - chr1_3:70127940-70127959 None:intergenic 40.0%
ATACGAGATTCGTTGTTCGA+TGG - chr1_3:70127967-70127986 None:intergenic 40.0%
AGTAGCCAAGGTGATATCAA+AGG + chr1_3:70127987-70128006 Msa0137600:intron 40.0%
CTTTGCCTTTGATATCACCT+TGG - chr1_3:70127995-70128014 None:intergenic 40.0%
TGAGCTTGAAGATGAAGTTG+TGG + chr1_3:70128065-70128084 Msa0137600:intron 40.0%
GAGCTTGAAGATGAAGTTGT+GGG + chr1_3:70128066-70128085 Msa0137600:intron 40.0%
AGCTTGAAGATGAAGTTGTG+GGG + chr1_3:70128067-70128086 Msa0137600:intron 40.0%
GCTGTTGCTAAACATGAAGA+TGG + chr1_3:70128115-70128134 Msa0137600:intron 40.0%
AGAGCAACACAAAGTTTGAG+AGG + chr1_3:70128264-70128283 Msa0137600:intron 40.0%
AAAGAGTTCTTTGGCATGAC+TGG + chr1_3:70128302-70128321 Msa0137600:intron 40.0%
AAGAGTTCTTTGGCATGACT+GGG + chr1_3:70128303-70128322 Msa0137600:intron 40.0%
AGGATAAGGTGAAACTTGAG+AGG + chr1_3:70128448-70128467 Msa0137600:intron 40.0%
CTCAAACTCCTTCAACTAAC+AGG - chr1_3:70128488-70128507 None:intergenic 40.0%
GTTTCGGCAAAAAACCTTAC+CGG + chr1_3:70128693-70128712 Msa0137600:intron 40.0%
CAAAAAACCTTACCGGAAGA+TGG + chr1_3:70128700-70128719 Msa0137600:intron 40.0%
GAAAATAACATGCTCGGCAA+CGG + chr1_3:70128744-70128763 Msa0137600:intron 40.0%
!! GTTCTGGATCCAGGTTTTTA+GGG - chr1_3:70128842-70128861 None:intergenic 40.0%
!! ACCTTACAAACTGGTCTTGT+CGG - chr1_3:70128929-70128948 None:intergenic 40.0%
AAGAATGCCCAAGCTCTATT+TGG + chr1_3:70128950-70128969 Msa0137600:intron 40.0%
AGAATGCCCAAGCTCTATTT+GGG + chr1_3:70128951-70128970 Msa0137600:intron 40.0%
! AGGACTGAATATTTGGAGTG+AGG - chr1_3:70128991-70129010 None:intergenic 40.0%
CACACTCAGGACTGAATATT+TGG - chr1_3:70128998-70129017 None:intergenic 40.0%
! TCTGGTTTCCTCATAAACTC+AGG + chr1_3:70129359-70129378 Msa0137600:intron 40.0%
!!! GCAAGATTTTTGGCAACTGA+TGG - chr1_3:70129720-70129739 None:intergenic 40.0%
CATACCGAAAGTTCTTGGTT+CGG + chr1_3:70130159-70130178 Msa0137600:three_prime_UTR 40.0%
CGCTCTTCACTCTGTCAAAA+TGG - chr1_3:70124640-70124659 None:intergenic 45.0%
TTGAATGGAGAAGCGAGAGA+GGG - chr1_3:70124726-70124745 None:intergenic 45.0%
! AACCGAACATTTTCACCTGC+TGG - chr1_3:70124932-70124951 None:intergenic 45.0%
TCGGTTTCGGTTGGACAATT+TGG + chr1_3:70124946-70124965 Msa0137600:CDS 45.0%
CGGTTTCGGTTGGACAATTT+GGG + chr1_3:70124947-70124966 Msa0137600:CDS 45.0%
CTCTTTCTTGAACCTGGTTG+TGG - chr1_3:70124974-70124993 None:intergenic 45.0%
AGAGCAAAGAGAAAGGGAAG+AGG + chr1_3:70124992-70125011 Msa0137600:CDS 45.0%
CAAAAATCTCGATCTGGACC+TGG + chr1_3:70125061-70125080 Msa0137600:CDS 45.0%
TTGGGCAATCGTCGATAAAG+TGG - chr1_3:70125118-70125137 None:intergenic 45.0%
CCCAAACTTAGAGGAATTGC+AGG + chr1_3:70125133-70125152 Msa0137600:CDS 45.0%
ATTGCGCAAAAGCTCCCATT+TGG - chr1_3:70125386-70125405 None:intergenic 45.0%
CTTGATCACTCCCTAACAGT+AGG - chr1_3:70125606-70125625 None:intergenic 45.0%
AGTATGCCTATTACAGGAGC+CGG + chr1_3:70125748-70125767 Msa0137600:intron 45.0%
CTGGTAGACATAGAAGATGC+TGG + chr1_3:70126183-70126202 Msa0137600:CDS 45.0%
TGGATTTCAAGAAGGGGAAG+AGG + chr1_3:70126203-70126222 Msa0137600:CDS 45.0%
GTGTGATTAACCCATCAGGA+AGG + chr1_3:70126253-70126272 Msa0137600:CDS 45.0%
TTAACCCATCAGGAAGGGAA+CGG + chr1_3:70126259-70126278 Msa0137600:CDS 45.0%
AAGAGGGCTTAGGTTTGAGA+GGG + chr1_3:70126897-70126916 Msa0137600:intron 45.0%
CTTCTCTACTCCCTATACCA+AGG - chr1_3:70126957-70126976 None:intergenic 45.0%
TTGGTATCAAGGCTCCATCA+AGG + chr1_3:70127063-70127082 Msa0137600:intron 45.0%
! AAAGGCACACATGGATGTCA+TGG + chr1_3:70127130-70127149 Msa0137600:intron 45.0%
AATGCTCCAAAACCCGACTT+GGG + chr1_3:70127301-70127320 Msa0137600:intron 45.0%
TATGACACATCACCCAAGTC+GGG - chr1_3:70127316-70127335 None:intergenic 45.0%
AGATTGAAGCTACCCTTGGA+CGG + chr1_3:70127508-70127527 Msa0137600:intron 45.0%
GAGTGAAGAAAAGAGTCGGT+CGG + chr1_3:70127571-70127590 Msa0137600:intron 45.0%
AAGAAAAGAGTCGGTCGGTT+TGG + chr1_3:70127576-70127595 Msa0137600:intron 45.0%
GGAGTGAAATGACTATGGCA+TGG + chr1_3:70127662-70127681 Msa0137600:intron 45.0%
! GCATGGAAGTGGAAGTTGAT+CGG + chr1_3:70127679-70127698 Msa0137600:intron 45.0%
ACTTCTGTTAGGTTACCAGG+TGG - chr1_3:70127766-70127785 None:intergenic 45.0%
ACCTGGTAACCTAACAGAAG+TGG + chr1_3:70127765-70127784 Msa0137600:intron 45.0%
TCCACTTCTGTTAGGTTACC+AGG - chr1_3:70127769-70127788 None:intergenic 45.0%
CACATCATTGTTGAATGCGG+AGG + chr1_3:70127854-70127873 Msa0137600:intron 45.0%
!! GTACAAGAGCACACTTTTGG+TGG - chr1_3:70127880-70127899 None:intergenic 45.0%
GTGTGCTCTTGTACAAAGGA+TGG + chr1_3:70127886-70127905 Msa0137600:intron 45.0%
!! GTTGTTCGATGGTGGACATT+AGG - chr1_3:70127956-70127975 None:intergenic 45.0%
CGAATCTCGTATAGTAGCCA+AGG + chr1_3:70127975-70127994 Msa0137600:intron 45.0%
TGACAACTTCAACCTTTGGG+TGG + chr1_3:70128039-70128058 Msa0137600:intron 45.0%
CATCAATGCATGAGCCTATG+CGG - chr1_3:70128170-70128189 None:intergenic 45.0%
! TAGGCTCATGCATTGATGAG+AGG + chr1_3:70128172-70128191 Msa0137600:intron 45.0%
GCAACACAAAGTTTGAGAGG+CGG + chr1_3:70128267-70128286 Msa0137600:intron 45.0%
CAACACAAAGTTTGAGAGGC+GGG + chr1_3:70128268-70128287 Msa0137600:intron 45.0%
ACTGGGAGTCAAACTGTCAA+AGG + chr1_3:70128320-70128339 Msa0137600:intron 45.0%
CTGGGAGTCAAACTGTCAAA+GGG + chr1_3:70128321-70128340 Msa0137600:intron 45.0%
GTCTTGCTGCAGCTAGAATA+AGG - chr1_3:70128398-70128417 None:intergenic 45.0%
! TAGCTGCAGCAAGACTGTTT+TGG + chr1_3:70128403-70128422 Msa0137600:intron 45.0%
CCTCCTGTATGGTTCAGTTT+CGG + chr1_3:70128677-70128696 Msa0137600:intron 45.0%
TTGCCGAAACTGAACCATAC+AGG - chr1_3:70128683-70128702 None:intergenic 45.0%
GCTTATAGGAAGCCATCTTC+CGG - chr1_3:70128715-70128734 None:intergenic 45.0%
! GCTTCCTATAAGCCTTGTGA+AGG + chr1_3:70128722-70128741 Msa0137600:intron 45.0%
!!! TGGATCCAGGTTTTTAGGGT+TGG - chr1_3:70128838-70128857 None:intergenic 45.0%
!!! GGTTCTGGATCCAGGTTTTT+AGG - chr1_3:70128843-70128862 None:intergenic 45.0%
AAATACGCTGTTACCAGAGC+AGG - chr1_3:70128864-70128883 None:intergenic 45.0%
ACCGACAAGACCAGTTTGTA+AGG + chr1_3:70128925-70128944 Msa0137600:intron 45.0%
AGGCTTCCCAAATAGAGCTT+GGG - chr1_3:70128960-70128979 None:intergenic 45.0%
AAGGCTTCCCAAATAGAGCT+TGG - chr1_3:70128961-70128980 None:intergenic 45.0%
! TTTGGAGTGAGGACAAACGA+AGG - chr1_3:70128980-70128999 None:intergenic 45.0%
TATTCAGTCCTGAGTGTGTG+AGG + chr1_3:70129000-70129019 Msa0137600:intron 45.0%
ATTCAGTCCTGAGTGTGTGA+GGG + chr1_3:70129001-70129020 Msa0137600:intron 45.0%
ATACGCTACCAAGTGGGAAA+AGG + chr1_3:70129290-70129309 Msa0137600:intron 45.0%
! TTCCACGCTTTTCGTCACAA+TGG + chr1_3:70129489-70129508 Msa0137600:intron 45.0%
ATCCATTGTGACGAAAAGCG+TGG - chr1_3:70129494-70129513 None:intergenic 45.0%
!! GTTTGTTGTGCTCTGGTTTC+AGG + chr1_3:70129563-70129582 Msa0137600:intron 45.0%
AAGTTTCTCCTTCGCTGATG+TGG - chr1_3:70129643-70129662 None:intergenic 45.0%
AAGGAGAAACTTGAGTCTGC+TGG + chr1_3:70129651-70129670 Msa0137600:CDS 45.0%
TGTTCCATCACTGTGATTCC+TGG + chr1_3:70129675-70129694 Msa0137600:CDS 45.0%
TGATTCCTGGCCGTAAGAAA+TGG + chr1_3:70129688-70129707 Msa0137600:CDS 45.0%
GATTCCTGGCCGTAAGAAAT+GGG + chr1_3:70129689-70129708 Msa0137600:CDS 45.0%
TTAACCCATTTCTTACGGCC+AGG - chr1_3:70129696-70129715 None:intergenic 45.0%
! CTTCTTGGCGAAGTATTCGT+CGG - chr1_3:70129748-70129767 None:intergenic 45.0%
!! GTTTGCTTGTCGATTTGTGC+TGG + chr1_3:70130028-70130047 Msa0137600:three_prime_UTR 45.0%
CGATTTGTGCTGGAAACCTT+TGG + chr1_3:70130038-70130057 Msa0137600:three_prime_UTR 45.0%
TTGTGCTGGAAACCTTTGGT+AGG + chr1_3:70130042-70130061 Msa0137600:three_prime_UTR 45.0%
AGGTGCATACCGAAAGTTCT+TGG + chr1_3:70130154-70130173 Msa0137600:three_prime_UTR 45.0%
!!! TTTTATAAAAATAAAAGAAA+AGG - chr1_3:70126113-70126132 None:intergenic 5.0%
!!! TTTTATAAAAAAACATAATA+AGG + chr1_3:70126123-70126142 Msa0137600:intron 5.0%
AGAGAGGGTAACCAGGAAAC+AGG - chr1_3:70124711-70124730 None:intergenic 50.0%
CTTGAATGGAGAAGCGAGAG+AGG - chr1_3:70124727-70124746 None:intergenic 50.0%
CTCTCTCGCTTCTCCATTCA+AGG + chr1_3:70124725-70124744 Msa0137600:CDS 50.0%
GACAATTTGGGTCCACAACC+AGG + chr1_3:70124959-70124978 Msa0137600:CDS 50.0%
! CAAGGAGCGAGTTGTGGTTT+TGG + chr1_3:70125028-70125047 Msa0137600:CDS 50.0%
TCTGGACCTGGTATCATGAG+AGG + chr1_3:70125073-70125092 Msa0137600:CDS 50.0%
CGACGATTGCCCAAACTTAG+AGG + chr1_3:70125124-70125143 Msa0137600:CDS 50.0%
GCATATCCGGCTCCTGTAAT+AGG - chr1_3:70125757-70125776 None:intergenic 50.0%
GTTTCCGTTCCCTTCCTGAT+GGG - chr1_3:70126266-70126285 None:intergenic 50.0%
AGTTTCCGTTCCCTTCCTGA+TGG - chr1_3:70126267-70126286 None:intergenic 50.0%
GAAGAGGGCTTAGGTTTGAG+AGG + chr1_3:70126896-70126915 Msa0137600:intron 50.0%
TTAGTATAGTCGGGGGTCCT+TGG + chr1_3:70126937-70126956 Msa0137600:intron 50.0%
TCAAGGCTCCATCAAGGAGT+TGG + chr1_3:70127069-70127088 Msa0137600:intron 50.0%
CAAGGCTCCATCAAGGAGTT+GGG + chr1_3:70127070-70127089 Msa0137600:intron 50.0%
GCACACATGGATGTCATGGA+TGG + chr1_3:70127134-70127153 Msa0137600:intron 50.0%
CATGGATGTCATGGATGGTG+AGG + chr1_3:70127139-70127158 Msa0137600:intron 50.0%
TGGGGAAGATGCATCTGTGT+TGG + chr1_3:70127175-70127194 Msa0137600:intron 50.0%
GTCATCTGTGTAGCCATGGA+AGG + chr1_3:70127258-70127277 Msa0137600:intron 50.0%
CAATGCTCCAAAACCCGACT+TGG + chr1_3:70127300-70127319 Msa0137600:intron 50.0%
! ACATCACCCAAGTCGGGTTT+TGG - chr1_3:70127310-70127329 None:intergenic 50.0%
GGTTACGAATCATGGATGGC+TGG - chr1_3:70127355-70127374 None:intergenic 50.0%
AGGGCTTGTGCATGAATGCA+AGG + chr1_3:70127405-70127424 Msa0137600:intron 50.0%
GGCAAGATTGAAGCTACCCT+TGG + chr1_3:70127504-70127523 Msa0137600:intron 50.0%
GATTGAAGCTACCCTTGGAC+GGG + chr1_3:70127509-70127528 Msa0137600:intron 50.0%
TCCAATAGTGACCCGTCCAA+GGG - chr1_3:70127523-70127542 None:intergenic 50.0%
! AAGTGGAAGTTGATCGGCCT+AGG + chr1_3:70127685-70127704 Msa0137600:intron 50.0%
! AGTGGAAGTTGATCGGCCTA+GGG + chr1_3:70127686-70127705 Msa0137600:intron 50.0%
ATTACCGAACAGGGGACAGT+AGG + chr1_3:70127727-70127746 Msa0137600:intron 50.0%
CAATCCTACTGTCCCCTGTT+CGG - chr1_3:70127734-70127753 None:intergenic 50.0%
CGAGATTCGTTGTTCGATGG+TGG - chr1_3:70127964-70127983 None:intergenic 50.0%
TCAAGCTCAATGCCACCCAA+AGG - chr1_3:70128054-70128073 None:intergenic 50.0%
TTCAAAGAGGCTGACCGCAT+AGG + chr1_3:70128153-70128172 Msa0137600:intron 50.0%
GCAGGCGTCAAAGAGTTCTT+TGG + chr1_3:70128293-70128312 Msa0137600:intron 50.0%
! GCTTGTAGTTTGTGGGAGCT+AGG + chr1_3:70128512-70128531 Msa0137600:intron 50.0%
GGCCAACTGAAGACTCATCA+GGG - chr1_3:70128619-70128638 None:intergenic 50.0%
TGCTCTTTGAGCCTCCTGTA+TGG + chr1_3:70128666-70128685 Msa0137600:intron 50.0%
CCGAAACTGAACCATACAGG+AGG - chr1_3:70128680-70128699 None:intergenic 50.0%
TAGGAAGCCATCTTCCGGTA+AGG - chr1_3:70128710-70128729 None:intergenic 50.0%
!! TCTAGGGTTAGCCTTGACGA+CGG + chr1_3:70128812-70128831 Msa0137600:intron 50.0%
!! CTGGTCTTGTCGGTTCAGTT+AGG - chr1_3:70128919-70128938 None:intergenic 50.0%
TTCAGTCCTGAGTGTGTGAG+GGG + chr1_3:70129002-70129021 Msa0137600:intron 50.0%
CTACCAAGTGGGAAAAGGCA+TGG + chr1_3:70129295-70129314 Msa0137600:intron 50.0%
! TGCCTTTTCCACATCAGCGA+AGG + chr1_3:70129632-70129651 Msa0137600:CDS 50.0%
CTCCTTCGCTGATGTGGAAA+AGG - chr1_3:70129637-70129656 None:intergenic 50.0%
! GTCGGCACGTGCAAGATTTT+TGG - chr1_3:70129730-70129749 None:intergenic 50.0%
! GGCACCGAACCAAGAACTTT+CGG - chr1_3:70130166-70130185 None:intergenic 50.0%
AGAAGCGAGAGAGGGTAACC+AGG - chr1_3:70124718-70124737 None:intergenic 55.0%
TCTGCTTCGGTGAAACCAGC+AGG + chr1_3:70124914-70124933 Msa0137600:CDS 55.0%
!! AAGGGAAGAGGTATTGCCGC+AGG + chr1_3:70125004-70125023 Msa0137600:CDS 55.0%
!! AGAGGTATTGCCGCAGGACA+AGG + chr1_3:70125010-70125029 Msa0137600:CDS 55.0%
ACAACTCGCTCCTTGTCCTG+CGG - chr1_3:70125023-70125042 None:intergenic 55.0%
!! AGAAGGGGAAGAGGTGTCTC+TGG + chr1_3:70126212-70126231 Msa0137600:CDS 55.0%
! GGTGTCTCTGGAGACACTGA+CGG + chr1_3:70126224-70126243 Msa0137600:CDS 55.0%
TAGTCGGGGGTCCTTGGTAT+AGG + chr1_3:70126943-70126962 Msa0137600:intron 55.0%
AGTCGGGGGTCCTTGGTATA+GGG + chr1_3:70126944-70126963 Msa0137600:intron 55.0%
ACCCTTGGACGGGTCACTAT+TGG + chr1_3:70127519-70127538 Msa0137600:intron 55.0%
CTCCAATAGTGACCCGTCCA+AGG - chr1_3:70127524-70127543 None:intergenic 55.0%
CTTGGACGGGTCACTATTGG+AGG + chr1_3:70127522-70127541 Msa0137600:intron 55.0%
CAGGGGACAGTAGGATTGCA+AGG + chr1_3:70127736-70127755 Msa0137600:intron 55.0%
GGATTGCAAGGTCAACCACC+TGG + chr1_3:70127748-70127767 Msa0137600:intron 55.0%
AAGTTTGAGAGGCGGGATGC+AGG + chr1_3:70128275-70128294 Msa0137600:intron 55.0%
GGCCCTGATGAGTCTTCAGT+TGG + chr1_3:70128614-70128633 Msa0137600:intron 55.0%
GGGCCAACTGAAGACTCATC+AGG - chr1_3:70128620-70128639 None:intergenic 55.0%
!! TTTAGGGTTGGCCGTCGTCA+AGG - chr1_3:70128826-70128845 None:intergenic 55.0%
GACGGCCAACCCTAAAAACC+TGG + chr1_3:70128830-70128849 Msa0137600:intron 55.0%
GCTGTTACCAGAGCAGGTTC+TGG - chr1_3:70128858-70128877 None:intergenic 55.0%
! CCACCATGCCTTTTCCCACT+TGG - chr1_3:70129301-70129320 None:intergenic 55.0%
! CCAAGTGGGAAAAGGCATGG+TGG + chr1_3:70129298-70129317 Msa0137600:intron 55.0%
! AGTGGGAAAAGGCATGGTGG+TGG + chr1_3:70129301-70129320 Msa0137600:intron 55.0%
ACGGCCAGGAATCACAGTGA+TGG - chr1_3:70129682-70129701 None:intergenic 55.0%
AGCAGCTGCTTCTCGCTTCT+TGG - chr1_3:70129763-70129782 None:intergenic 55.0%
GCAGGACAAGGAGCGAGTTG+TGG + chr1_3:70125022-70125041 Msa0137600:CDS 60.0%
AGTTGATCGGCCTAGGGCAG+AGG + chr1_3:70127692-70127711 Msa0137600:intron 60.0%
!! CCAGAGCAGGTTCTGGATCC+AGG - chr1_3:70128851-70128870 None:intergenic 60.0%
CCTGGATCCAGAACCTGCTC+TGG + chr1_3:70128848-70128867 Msa0137600:intron 60.0%
AGTCCTGAGTGTGTGAGGGG+AGG + chr1_3:70129005-70129024 Msa0137600:intron 60.0%
ACACCTCCCCTCACACACTC+AGG - chr1_3:70129011-70129030 None:intergenic 60.0%
CATGCTCGGCAACGGCAGTG+CGG + chr1_3:70128752-70128771 Msa0137600:intron 65.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 70124590 70130227 70124590 ID=Msa0137600;Name=Msa0137600
chr1_3 mRNA 70124590 70130227 70124590 ID=Msa0137600-mRNA-1;Parent=Msa0137600;Name=Msa0137600-mRNA-1;_AED=0.01;_eAED=0.01;_QI=94|1|1|1|1|1|4|424|257
chr1_3 exon 70124590 70124746 70124590 ID=Msa0137600-mRNA-1:exon:24279;Parent=Msa0137600-mRNA-1
chr1_3 exon 70124818 70125157 70124818 ID=Msa0137600-mRNA-1:exon:24280;Parent=Msa0137600-mRNA-1
chr1_3 exon 70126145 70126296 70126145 ID=Msa0137600-mRNA-1:exon:24281;Parent=Msa0137600-mRNA-1
chr1_3 exon 70129585 70130227 70129585 ID=Msa0137600-mRNA-1:exon:24282;Parent=Msa0137600-mRNA-1
chr1_3 five_prime_UTR 70124590 70124683 70124590 ID=Msa0137600-mRNA-1:five_prime_utr;Parent=Msa0137600-mRNA-1
chr1_3 CDS 70124684 70124746 70124684 ID=Msa0137600-mRNA-1:cds;Parent=Msa0137600-mRNA-1
chr1_3 CDS 70124818 70125157 70124818 ID=Msa0137600-mRNA-1:cds;Parent=Msa0137600-mRNA-1
chr1_3 CDS 70126145 70126296 70126145 ID=Msa0137600-mRNA-1:cds;Parent=Msa0137600-mRNA-1
chr1_3 CDS 70129585 70129803 70129585 ID=Msa0137600-mRNA-1:cds;Parent=Msa0137600-mRNA-1
chr1_3 three_prime_UTR 70129804 70130227 70129804 ID=Msa0137600-mRNA-1:three_prime_utr;Parent=Msa0137600-mRNA-1
Gene Sequence

>Msa0137600

ATGAGTGCTGCTGCTTCTCTTATTCCTGTTTCCTGGTTACCCTCTCTCGCTTCTCCATTCAAGGGAAATGTGAAAACCTTGGTAGCAAAACCATATCTATGTCCATGTCTTAAAATTCAGCGAATGAAACCTCGTGTTTTTGTTGTTAATAAGGCTGCTTCTGCTTCGGTGAAACCAGCAGGTGAAAATGTTCGGTTTCGGTTGGACAATTTGGGTCCACAACCAGGTTCAAGAAAGAGAGCAAAGAGAAAGGGAAGAGGTATTGCCGCAGGACAAGGAGCGAGTTGTGGTTTTGGAATGAGAGGTCAAAAATCTCGATCTGGACCTGGTATCATGAGAGGTTTTGAAGGTGGTCAGATGCCACTTTATCGACGATTGCCCAAACTTAGAGGAATTGCAGGAGGTATGCATGCTGGATTGCCGAAATATGTCCACATCAATCTGGTAGACATAGAAGATGCTGGATTTCAAGAAGGGGAAGAGGTGTCTCTGGAGACACTGACGGAGAAACGTGTGATTAACCCATCAGGAAGGGAACGGAAACTTCTATTGAAGGTTTTGGGTGAAGGAGAACTAAGCAAGAAGTTGACAATAAAAGCTGGTGCCTTTTCCACATCAGCGAAGGAGAAACTTGAGTCTGCTGGTTGTTCCATCACTGTGATTCCTGGCCGTAAGAAATGGGTTAAGCCATCAGTTGCCAAAAATCTTGCACGTGCCGACGAATACTTCGCCAAGAAGCGAGAAGCAGCTGCTTCTGAACCAGATTCTGTTTAA

Protein sequence

>Msa0137600

MSAAASLIPVSWLPSLASPFKGNVKTLVAKPYLCPCLKIQRMKPRVFVVNKAASASVKPAGENVRFRLDNLGPQPGSRKRAKRKGRGIAAGQGASCGFGMRGQKSRSGPGIMRGFEGGQMPLYRRLPKLRGIAGGMHAGLPKYVHINLVDIEDAGFQEGEEVSLETLTEKRVINPSGRERKLLLKVLGEGELSKKLTIKAGAFSTSAKEKLESAGCSITVIPGRKKWVKPSVAKNLARADEYFAKKREAAASEPDSV*