AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0092660


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0092660 MtrunA17_Chr1g0209801 95.331 257 12 0 1 257 1 257 5.96e-179 492
Msa0092660 MtrunA17_Chr1g0193661 32.639 144 88 5 78 218 74 211 8.38e-12 63.9
Msa0092660 MtrunA17_Chr4g0066351 32.639 144 88 5 78 218 74 211 9.77e-12 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0092660 AT3G25920.1 70.464 237 58 2 17 243 24 258 2.52e-111 322

Find 80 sgRNAs with CRISPR-Local

Find 428 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACAAATTGGTTTCTTCTTT+AGG 0.207614 1_2:+75343805 Msa0092660:three_prime_UTR
TCGGTTTCGGTTGGACAATT+TGG 0.209684 1_2:+75338912 Msa0092660:CDS
CAAGGAGCGAGTTGTGGTTT+TGG 0.247810 1_2:+75338994 Msa0092660:CDS
ATCAATCATCATCAACAAAT+TGG 0.250968 1_2:+75343792 Msa0092660:three_prime_UTR
TCCTGCAATTCCTCTAAGTT+TGG 0.258498 1_2:-75339100 None:intergenic
CGCTCTTCACTCTGTCAAAA+TGG 0.262848 1_2:-75338603 None:intergenic
CTTCTCTTATTCCTGTTTCC+TGG 0.269459 1_2:+75338663 Msa0092660:CDS
CGGTTTCGGTTGGACAATTT+GGG 0.284648 1_2:+75338913 Msa0092660:CDS
AGCAGCTGCTTCTCGCTTCT+TGG 0.291577 1_2:-75343722 None:intergenic
TTGCATATTTAAACAGAATC+TGG 0.313222 1_2:-75343751 None:intergenic
CGACGATTGCCCAAACTTAG+AGG 0.316218 1_2:+75339090 Msa0092660:CDS
AGATTGATGTGGACATATTT+CGG 0.336463 1_2:-75340127 None:intergenic
CTCTCTCGCTTCTCCATTCA+AGG 0.354654 1_2:+75338691 Msa0092660:CDS
CTCTTTCTTGAACCTGGTTG+TGG 0.358662 1_2:-75338937 None:intergenic
CATCATTGAACAGTGAAATA+AGG 0.365832 1_2:-75344145 None:intergenic
TTAAGACATGGACATAGATA+TGG 0.367880 1_2:-75338811 None:intergenic
GAGAAAACTTCAATACAAAA+AGG 0.369347 1_2:-75343868 None:intergenic
TGTTCCATCACTGTGATTCC+TGG 0.369456 1_2:+75343637 Msa0092660:CDS
CCCAAACTTAGAGGAATTGC+AGG 0.376415 1_2:+75339099 Msa0092660:CDS
TGATTCCTGGCCGTAAGAAA+TGG 0.380224 1_2:+75343650 Msa0092660:CDS
AGGTGCATACCGAAAGTTCT+TGG 0.394725 1_2:+75344115 Msa0092660:three_prime_UTR
CCTGCAATTCCTCTAAGTTT+GGG 0.397805 1_2:-75339099 None:intergenic
CTCCTTCGCTGATGTGGAAA+AGG 0.406202 1_2:-75343596 None:intergenic
GGAAATAGAAATACCTTGAA+TGG 0.411477 1_2:-75338704 None:intergenic
CTCTGTCAAAATGGAACAAA+CGG 0.412322 1_2:-75338594 None:intergenic
TTTGCTCTCTTTCTTGAACC+TGG 0.419614 1_2:-75338943 None:intergenic
TAATAAGGCTGCTTCTGCTT+CGG 0.436199 1_2:+75338867 Msa0092660:CDS
GGCACCGAACCAAGAACTTT+CGG 0.440027 1_2:-75344124 None:intergenic
AAGAAAGAGAGCAAAGAGAA+AGG 0.443452 1_2:+75338951 Msa0092660:CDS
AGAGAGGGTAACCAGGAAAC+AGG 0.445145 1_2:-75338674 None:intergenic
ATGGCTTAACCCATTTCTTA+CGG 0.452810 1_2:-75343660 None:intergenic
AACCAGCAGGTGAAAATGTT+CGG 0.456863 1_2:+75338893 Msa0092660:CDS
CGATTTGTGCTGGAAACCTT+TGG 0.460118 1_2:+75343999 Msa0092660:three_prime_UTR
AGAAGGGGAAGAGGTGTCTC+TGG 0.461261 1_2:+75340177 Msa0092660:CDS
CAGGTGAAAATGTTCGGTTT+CGG 0.473561 1_2:+75338899 Msa0092660:CDS
GTTTGCTTGTCGATTTGTGC+TGG 0.476311 1_2:+75343989 Msa0092660:three_prime_UTR
GACAATTTGGGTCCACAACC+AGG 0.479320 1_2:+75338925 Msa0092660:CDS
AGAAAGAGAGCAAAGAGAAA+GGG 0.484644 1_2:+75338952 Msa0092660:CDS
TGAAAATGTTCGGTTTCGGT+TGG 0.487169 1_2:+75338903 Msa0092660:CDS
AGAAGCGAGAGAGGGTAACC+AGG 0.489358 1_2:-75338681 None:intergenic
AAGTTTCTCCTTCGCTGATG+TGG 0.489671 1_2:-75343602 None:intergenic
TTAACCCATTTCTTACGGCC+AGG 0.492636 1_2:-75343655 None:intergenic
GAAATATGTCCACATCAATC+TGG 0.495258 1_2:+75340129 Msa0092660:CDS
GGAACGGAAACTTCTATTGA+AGG 0.496485 1_2:+75340240 Msa0092660:CDS
AGTTTCCGTTCCCTTCCTGA+TGG 0.497026 1_2:-75340229 None:intergenic
ACATAATAAGGTATGCATGC+TGG 0.501018 1_2:+75340100 Msa0092660:intron
TCTGCTTCGGTGAAACCAGC+AGG 0.507750 1_2:+75338880 Msa0092660:CDS
AGAGCAAAGAGAAAGGGAAG+AGG 0.509714 1_2:+75338958 Msa0092660:CDS
GATTCCTGGCCGTAAGAAAT+GGG 0.511756 1_2:+75343651 Msa0092660:CDS
CATACCGAAAGTTCTTGGTT+CGG 0.517088 1_2:+75344120 Msa0092660:three_prime_UTR
GTTATGTAGTTTCTTGTACA+AGG 0.522578 1_2:+75344095 Msa0092660:three_prime_UTR
GAAGATGCTGGATTTCAAGA+AGG 0.525528 1_2:+75340160 Msa0092660:CDS
AAGGAGAAACTTGAGTCTGC+TGG 0.526406 1_2:+75343613 Msa0092660:CDS
CTGGTAGACATAGAAGATGC+TGG 0.527862 1_2:+75340148 Msa0092660:CDS
AAACGTGTGATTAACCCATC+AGG 0.531753 1_2:+75340214 Msa0092660:CDS
AAGATGCTGGATTTCAAGAA+GGG 0.537870 1_2:+75340161 Msa0092660:CDS
GTTTCCGTTCCCTTCCTGAT+GGG 0.539207 1_2:-75340228 None:intergenic
AGAGGTATTGCCGCAGGACA+AGG 0.557884 1_2:+75338976 Msa0092660:CDS
TTGGGCAATCGTCGATAAAG+TGG 0.564517 1_2:-75339081 None:intergenic
AAGAAGTTGACAATAAAAGC+TGG 0.573815 1_2:+75343571 Msa0092660:CDS
GCAGGACAAGGAGCGAGTTG+TGG 0.577933 1_2:+75338988 Msa0092660:CDS
TGGATTTCAAGAAGGGGAAG+AGG 0.578835 1_2:+75340168 Msa0092660:CDS
GTAGGGAAATGTGAAAACCT+TGG 0.584114 1_2:+75338780 Msa0092660:intron
AAGGGAAGAGGTATTGCCGC+AGG 0.588347 1_2:+75338970 Msa0092660:CDS
TTGTGCTGGAAACCTTTGGT+AGG 0.590784 1_2:+75344003 Msa0092660:three_prime_UTR
CTTGAATGGAGAAGCGAGAG+AGG 0.590843 1_2:-75338690 None:intergenic
GGTGTCTCTGGAGACACTGA+CGG 0.598433 1_2:+75340189 Msa0092660:CDS
ATTAAACACACTCCTACCAA+AGG 0.609468 1_2:-75344015 None:intergenic
GTGTGATTAACCCATCAGGA+AGG 0.611754 1_2:+75340218 Msa0092660:CDS
TTGAATGGAGAAGCGAGAGA+GGG 0.622388 1_2:-75338689 None:intergenic
CTTCTTGGCGAAGTATTCGT+CGG 0.627986 1_2:-75343707 None:intergenic
ACGGCCAGGAATCACAGTGA+TGG 0.630385 1_2:-75343641 None:intergenic
TGTGATTAACCCATCAGGAA+GGG 0.634878 1_2:+75340219 Msa0092660:CDS
TCTGGACCTGGTATCATGAG+AGG 0.634957 1_2:+75339039 Msa0092660:CDS
TCAAAACCTCTCATGATACC+AGG 0.646172 1_2:-75339045 None:intergenic
CTATGTCTACCAGATTGATG+TGG 0.650882 1_2:-75340138 None:intergenic
TTAACCCATCAGGAAGGGAA+CGG 0.658603 1_2:+75340224 Msa0092660:CDS
AGATGCTGGATTTCAAGAAG+GGG 0.662527 1_2:+75340162 Msa0092660:CDS
ACAACTCGCTCCTTGTCCTG+CGG 0.686055 1_2:-75338986 None:intergenic
AAACTTAGAGGAATTGCAGG+AGG 0.696930 1_2:+75339102 Msa0092660:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTAATTAAATGTACATTTA+GGG - chr1_2:75340991-75341010 None:intergenic 10.0%
!!! TTTTAATTAAATGTACATTT+AGG - chr1_2:75340992-75341011 None:intergenic 10.0%
!!! TACACAATATATTTTTAAAA+AGG + chr1_2:75343486-75343505 Msa0092660:intron 10.0%
!! AATTTCAACAATAAAACAAT+AGG - chr1_2:75339159-75339178 None:intergenic 15.0%
!! GAATTATATTAGGATAATTT+AGG + chr1_2:75339544-75339563 Msa0092660:intron 15.0%
!!! AAAAGCAATTATTTTATGAA+AGG + chr1_2:75339968-75339987 Msa0092660:intron 15.0%
!!! GATTATTTTAGATTAACTAT+AGG - chr1_2:75340784-75340803 None:intergenic 15.0%
!!! TATTAATCTTTTTCACTTTA+AGG + chr1_2:75342390-75342409 Msa0092660:intron 15.0%
!!! TCTAATATCATTTAGAATTT+TGG + chr1_2:75342855-75342874 Msa0092660:intron 15.0%
!!! TTCTTTTCAAGATATTTTAA+TGG - chr1_2:75343950-75343969 None:intergenic 15.0%
!!! GTGTGTTTAATTTTATAATA+AGG + chr1_2:75344027-75344046 Msa0092660:three_prime_UTR 15.0%
!! TATGAGAAAATGAAATGAAA+TGG - chr1_2:75338728-75338747 None:intergenic 20.0%
!!! ACCATTGATTTTATATTTGT+AGG + chr1_2:75338762-75338781 Msa0092660:intron 20.0%
!!! CCATTGATTTTATATTTGTA+GGG + chr1_2:75338763-75338782 Msa0092660:intron 20.0%
!!! GAAAATAATGTTTTCAACTA+TGG + chr1_2:75339196-75339215 Msa0092660:intron 20.0%
!! AACAAAACATCGTAAAAAAA+GGG - chr1_2:75339472-75339491 None:intergenic 20.0%
!! TAACAAAACATCGTAAAAAA+AGG - chr1_2:75339473-75339492 None:intergenic 20.0%
!!! GGATTTTGTTGAATTATATT+AGG + chr1_2:75339534-75339553 Msa0092660:intron 20.0%
!!! CTTTGAAAATCTACATATTA+GGG - chr1_2:75339757-75339776 None:intergenic 20.0%
!!! TCTTTGAAAATCTACATATT+AGG - chr1_2:75339758-75339777 None:intergenic 20.0%
!!! TTCACTTTTAAAAACAAATG+AGG + chr1_2:75340370-75340389 Msa0092660:intron 20.0%
!! TTTCATATTATGCCTTTAAT+CGG + chr1_2:75340484-75340503 Msa0092660:intron 20.0%
!! AAAGAGTTAAAGTTAGTTAA+TGG + chr1_2:75340641-75340660 Msa0092660:intron 20.0%
!!! TATTTTCAACAAGAGAAATA+AGG + chr1_2:75340820-75340839 Msa0092660:intron 20.0%
!! AAATATCAATTTCTGTCTAT+TGG + chr1_2:75341009-75341028 Msa0092660:intron 20.0%
!! TACCAGATAGAATATTTAAA+AGG + chr1_2:75341429-75341448 Msa0092660:intron 20.0%
!! ACCAGATAGAATATTTAAAA+GGG + chr1_2:75341430-75341449 Msa0092660:intron 20.0%
!! GAGAATTCAAGAATATAAAA+TGG + chr1_2:75341577-75341596 Msa0092660:intron 20.0%
!!! ATTTCTAAAGTGATATTTAG+CGG + chr1_2:75343127-75343146 Msa0092660:intron 20.0%
!!! TTATCAAAAAAGGTGTAATT+TGG + chr1_2:75344065-75344084 Msa0092660:three_prime_UTR 20.0%
! CCCTACAAATATAAAATCAA+TGG - chr1_2:75338766-75338785 None:intergenic 25.0%
! TTATTAACAACAAAAACACG+AGG - chr1_2:75338853-75338872 None:intergenic 25.0%
!!! TCGTGTTTTTGTTGTTAATA+AGG + chr1_2:75338852-75338871 Msa0092660:CDS 25.0%
!! AATAATGTTTTCAACTATGG+TGG + chr1_2:75339199-75339218 Msa0092660:intron 25.0%
! TTGACATTGTAATTCAATGA+TGG + chr1_2:75339232-75339251 Msa0092660:intron 25.0%
! TTAGTCTATATACTACCAAA+TGG + chr1_2:75339334-75339353 Msa0092660:intron 25.0%
! TAGTCTATATACTACCAAAT+GGG + chr1_2:75339335-75339354 Msa0092660:intron 25.0%
! ATCATTAGTAGGAAAAACAA+TGG + chr1_2:75339610-75339629 Msa0092660:intron 25.0%
! CATTTCAAGATGTCAATAAA+GGG - chr1_2:75339795-75339814 None:intergenic 25.0%
!!! TTTTGAAATGAAATCATGGA+AGG - chr1_2:75339952-75339971 None:intergenic 25.0%
!!! TTGCTTTTGAAATGAAATCA+TGG - chr1_2:75339956-75339975 None:intergenic 25.0%
!!! CTTTTAAAAACAAATGAGGA+TGG + chr1_2:75340374-75340393 Msa0092660:intron 25.0%
! AGAAGTCTTTCTTGATATAT+GGG - chr1_2:75340416-75340435 None:intergenic 25.0%
!! TAAGTTCAAACGCAATATTT+TGG + chr1_2:75340556-75340575 Msa0092660:intron 25.0%
!! TGAATTTGAAACTGTAAAGT+TGG + chr1_2:75340596-75340615 Msa0092660:intron 25.0%
!! TAAAGTTAGTTAATGGATGT+TGG + chr1_2:75340648-75340667 Msa0092660:intron 25.0%
!! AAAGTTAGTTAATGGATGTT+GGG + chr1_2:75340649-75340668 Msa0092660:intron 25.0%
! CTCTTGTTGAAAATATGTTT+AGG - chr1_2:75340815-75340834 None:intergenic 25.0%
! TGTTGTCTATAAATAAGAAG+AGG + chr1_2:75340845-75340864 Msa0092660:intron 25.0%
! GTTGTCTATAAATAAGAAGA+GGG + chr1_2:75340846-75340865 Msa0092660:intron 25.0%
!!! TCTTGTCATTTTAGTATAGT+CGG + chr1_2:75340892-75340911 Msa0092660:intron 25.0%
! GTATATCATTGAAGATTATG+TGG + chr1_2:75341059-75341078 Msa0092660:intron 25.0%
!!! GAGGTATTTTCATATGAAAT+AGG + chr1_2:75341177-75341196 Msa0092660:intron 25.0%
!! TTTTCATATGAAATAGGTGT+TGG + chr1_2:75341183-75341202 Msa0092660:intron 25.0%
! TTTCATATGAAATAGGTGTT+GGG + chr1_2:75341184-75341203 Msa0092660:intron 25.0%
! TGATGTGTCATAATGTTATT+AGG + chr1_2:75341289-75341308 Msa0092660:intron 25.0%
!! ACCCTTTTAAATATTCTATC+TGG - chr1_2:75341434-75341453 None:intergenic 25.0%
!! TTAAAAGGGTTTTTCTTGAA+AGG + chr1_2:75341444-75341463 Msa0092660:intron 25.0%
! AAAGAAATGGAAAATGACTA+TGG + chr1_2:75341619-75341638 Msa0092660:intron 25.0%
! AATAAAAAAGATTACCGAAC+AGG + chr1_2:75341679-75341698 Msa0092660:intron 25.0%
! ATAAAAAAGATTACCGAACA+GGG + chr1_2:75341680-75341699 Msa0092660:intron 25.0%
! AAAAGGAAAAGATGTCTTTA+TGG + chr1_2:75341754-75341773 Msa0092660:intron 25.0%
! AAAGGAAAAGATGTCTTTAT+GGG + chr1_2:75341755-75341774 Msa0092660:intron 25.0%
! TGTCAGATTCTAAACATATT+TGG - chr1_2:75341986-75342005 None:intergenic 25.0%
!!! TCTTTTTCACTTTAAGGATA+AGG + chr1_2:75342396-75342415 Msa0092660:intron 25.0%
!!! TCTTGTATTTTTAATAGAGC+TGG + chr1_2:75342554-75342573 Msa0092660:intron 25.0%
!!! CTTGTATTTTTAATAGAGCT+GGG + chr1_2:75342555-75342574 Msa0092660:intron 25.0%
!!! AATTCTATTTCTAAGTTGGT+TGG - chr1_2:75342609-75342628 None:intergenic 25.0%
!! TTCGTAGATATGAAAAGTAT+TGG - chr1_2:75343095-75343114 None:intergenic 25.0%
!! AATATTTTCCTGAGTTTATG+AGG - chr1_2:75343332-75343351 None:intergenic 25.0%
! CAATTTCAAACAACTTATAC+AGG + chr1_2:75343369-75343388 Msa0092660:intron 25.0%
! TTGCATATTTAAACAGAATC+TGG - chr1_2:75343754-75343773 None:intergenic 25.0%
! ATCAATCATCATCAACAAAT+TGG + chr1_2:75343792-75343811 Msa0092660:three_prime_UTR 25.0%
!! AACAAATTGGTTTCTTCTTT+AGG + chr1_2:75343805-75343824 Msa0092660:three_prime_UTR 25.0%
! GAGAAAACTTCAATACAAAA+AGG - chr1_2:75343871-75343890 None:intergenic 25.0%
!! TTTTGTATTGAAGTTTTCTC+TGG + chr1_2:75343871-75343890 Msa0092660:three_prime_UTR 25.0%
GGAAATAGAAATACCTTGAA+TGG - chr1_2:75338707-75338726 None:intergenic 30.0%
TTAAGACATGGACATAGATA+TGG - chr1_2:75338814-75338833 None:intergenic 30.0%
!!! ATTCGCTGAATTTTAAGACA+TGG - chr1_2:75338826-75338845 None:intergenic 30.0%
! AATATAATTTGCCCGCTAAT+AGG + chr1_2:75339443-75339462 Msa0092660:intron 30.0%
! TAATTTAGGATCCTACTGTT+AGG + chr1_2:75339558-75339577 Msa0092660:intron 30.0%
! AATTTAGGATCCTACTGTTA+GGG + chr1_2:75339559-75339578 Msa0092660:intron 30.0%
ATGACTTTCAAATGTGATGT+AGG - chr1_2:75339691-75339710 None:intergenic 30.0%
GATATATACAACAGCATATC+CGG - chr1_2:75339735-75339754 None:intergenic 30.0%
CCATTTCAAGATGTCAATAA+AGG - chr1_2:75339796-75339815 None:intergenic 30.0%
CCTTTATTGACATCTTGAAA+TGG + chr1_2:75339793-75339812 Msa0092660:intron 30.0%
TTATTGTCTGAAGAGAATCA+TGG + chr1_2:75339819-75339838 Msa0092660:intron 30.0%
!! AAATTTAGGTATTGGAAGCT+TGG - chr1_2:75339859-75339878 None:intergenic 30.0%
AGGAAGAGAAATTTAGGTAT+TGG - chr1_2:75339867-75339886 None:intergenic 30.0%
AATGAAATCATGGAAGGATA+TGG - chr1_2:75339946-75339965 None:intergenic 30.0%
TTTCTTTCATTCTTTGTCGT+AGG + chr1_2:75339993-75340012 Msa0092660:intron 30.0%
AGATTGATGTGGACATATTT+CGG - chr1_2:75340130-75340149 None:intergenic 30.0%
!! ACACATTACTTGTTGGTTTA+TGG + chr1_2:75340264-75340283 Msa0092660:intron 30.0%
ACATGTAAGACAACAACTAA+GGG - chr1_2:75340305-75340324 None:intergenic 30.0%
AACATGTAAGACAACAACTA+AGG - chr1_2:75340306-75340325 None:intergenic 30.0%
! ATTGTTTTCATGATGTCTAG+AGG + chr1_2:75340336-75340355 Msa0092660:intron 30.0%
GAAGTCTTTCTTGATATATG+GGG - chr1_2:75340415-75340434 None:intergenic 30.0%
CAGAAGTCTTTCTTGATATA+TGG - chr1_2:75340417-75340436 None:intergenic 30.0%
ACTTTATTCACGATAGACAA+GGG - chr1_2:75340449-75340468 None:intergenic 30.0%
AACTTTATTCACGATAGACA+AGG - chr1_2:75340450-75340469 None:intergenic 30.0%
AACCAAAATTCTCCGATTAA+AGG - chr1_2:75340499-75340518 None:intergenic 30.0%
CTGTAAAGTTGGAATATAAG+AGG + chr1_2:75340607-75340626 Msa0092660:intron 30.0%
ACTTTAACTCTTTCAACCAA+CGG - chr1_2:75340634-75340653 None:intergenic 30.0%
TTTCTTTGAGCCTTACAAAA+CGG - chr1_2:75340720-75340739 None:intergenic 30.0%
TATAAATAAGAAGAGGGCTT+AGG + chr1_2:75340852-75340871 Msa0092660:intron 30.0%
!!! CTTGTCATTTTAGTATAGTC+GGG + chr1_2:75340893-75340912 Msa0092660:intron 30.0%
!!! TTGTCATTTTAGTATAGTCG+GGG + chr1_2:75340894-75340913 Msa0092660:intron 30.0%
TTAGGGAAAATTTCCTTGTA+TGG - chr1_2:75340974-75340993 None:intergenic 30.0%
ATTTCTGTCTATTGGTATCA+AGG + chr1_2:75341017-75341036 Msa0092660:intron 30.0%
! AATAAGAATAAAGGCACACA+TGG + chr1_2:75341086-75341105 Msa0092660:intron 30.0%
! TAACCCATTTGGTATTTTGT+TGG + chr1_2:75341335-75341354 Msa0092660:intron 30.0%
! AACCCATTTGGTATTTTGTT+GGG + chr1_2:75341336-75341355 Msa0092660:intron 30.0%
TACCCAACAAAATACCAAAT+GGG - chr1_2:75341341-75341360 None:intergenic 30.0%
ATACCCAACAAAATACCAAA+TGG - chr1_2:75341342-75341361 None:intergenic 30.0%
AAATGAGTGAAGAAAAGAGT+CGG + chr1_2:75341532-75341551 Msa0092660:intron 30.0%
AAATGGAGAAGTAAGAAGAA+AGG + chr1_2:75341594-75341613 Msa0092660:intron 30.0%
AAGAAGAAAGGTGAAAGAAA+TGG + chr1_2:75341606-75341625 Msa0092660:intron 30.0%
TAAAAAAGATTACCGAACAG+GGG + chr1_2:75341681-75341700 Msa0092660:intron 30.0%
CAGAGTTTCACAATTTGTAA+TGG - chr1_2:75341878-75341897 None:intergenic 30.0%
!! TAAACATGAAGATGGATTGT+TGG + chr1_2:75342085-75342104 Msa0092660:intron 30.0%
TGTTGGATTGTATTTCAAAG+AGG + chr1_2:75342102-75342121 Msa0092660:intron 30.0%
AAGACTTCCTTTATAAGAAG+AGG + chr1_2:75342170-75342189 Msa0092660:intron 30.0%
GTATCTACCTCTTCTTATAA+AGG - chr1_2:75342180-75342199 None:intergenic 30.0%
TGCTCTACATGAATAATACT+TGG - chr1_2:75342212-75342231 None:intergenic 30.0%
AACTACTACATCAAGCTAAA+AGG + chr1_2:75342309-75342328 Msa0092660:intron 30.0%
ACTACTACATCAAGCTAAAA+GGG + chr1_2:75342310-75342329 Msa0092660:intron 30.0%
TGCTGTCTATATATAAGAAG+AGG + chr1_2:75342517-75342536 Msa0092660:intron 30.0%
TATATATAAGAAGAGGCTGA+AGG + chr1_2:75342524-75342543 Msa0092660:intron 30.0%
!! GAGCAATTCTATTTCTAAGT+TGG - chr1_2:75342613-75342632 None:intergenic 30.0%
CAAACATGCATAAACTTCTA+GGG + chr1_2:75342758-75342777 Msa0092660:intron 30.0%
! TCTAGCATCATGAATTTTGT+TGG + chr1_2:75343193-75343212 Msa0092660:intron 30.0%
AGAAGAGCTCTTTCAAATAA+TGG - chr1_2:75343304-75343323 None:intergenic 30.0%
ATTATTTGAAAGAGCTCTTC+TGG + chr1_2:75343303-75343322 Msa0092660:intron 30.0%
ACTTCTAATTAGTCATGCAT+TGG + chr1_2:75343413-75343432 Msa0092660:intron 30.0%
CTTCTAATTAGTCATGCATT+GGG + chr1_2:75343414-75343433 Msa0092660:intron 30.0%
!! AATAATAGTTTGTTGTGCTC+TGG + chr1_2:75343518-75343537 Msa0092660:intron 30.0%
AAGAAGTTGACAATAAAAGC+TGG + chr1_2:75343571-75343590 Msa0092660:CDS 30.0%
!!! CCTTTTTTGATAAAGACACA+AGG - chr1_2:75344058-75344077 None:intergenic 30.0%
CCTTGTGTCTTTATCAAAAA+AGG + chr1_2:75344055-75344074 Msa0092660:three_prime_UTR 30.0%
GTTATGTAGTTTCTTGTACA+AGG + chr1_2:75344095-75344114 Msa0092660:three_prime_UTR 30.0%
CATCATTGAACAGTGAAATA+AGG - chr1_2:75344148-75344167 None:intergenic 30.0%
CTCTGTCAAAATGGAACAAA+CGG - chr1_2:75338597-75338616 None:intergenic 35.0%
!! TAGATATGGTTTTGCTACCA+AGG - chr1_2:75338800-75338819 None:intergenic 35.0%
AAGAAAGAGAGCAAAGAGAA+AGG + chr1_2:75338951-75338970 Msa0092660:CDS 35.0%
AGAAAGAGAGCAAAGAGAAA+GGG + chr1_2:75338952-75338971 Msa0092660:CDS 35.0%
ATCTCTTCTTACACAACACT+TGG + chr1_2:75339126-75339145 Msa0092660:intron 35.0%
TCTCTTCTTACACAACACTT+GGG + chr1_2:75339127-75339146 Msa0092660:intron 35.0%
AAAAAAGGGCAACCTATTAG+CGG - chr1_2:75339458-75339477 None:intergenic 35.0%
! TGTGAAGCATTATGATGCTA+CGG - chr1_2:75339502-75339521 None:intergenic 35.0%
TAGCATCATAATGCTTCACA+TGG + chr1_2:75339502-75339521 Msa0092660:intron 35.0%
TGCTTCACATGGAGTTTAAA+TGG + chr1_2:75339513-75339532 Msa0092660:intron 35.0%
CTACATGTAGCATCATTAGT+AGG + chr1_2:75339599-75339618 Msa0092660:intron 35.0%
TAGATGAGAATTGTGATTCC+TGG + chr1_2:75339634-75339653 Msa0092660:intron 35.0%
TACATAATCAATCTGCAACC+AGG - chr1_2:75339655-75339674 None:intergenic 35.0%
TCATGAAGTATGCCTATTAC+AGG + chr1_2:75339707-75339726 Msa0092660:intron 35.0%
TGAAGAGAATCATGGCATTA+TGG + chr1_2:75339827-75339846 Msa0092660:intron 35.0%
GAACTGAGGAAGAGAAATTT+AGG - chr1_2:75339873-75339892 None:intergenic 35.0%
GTCAAGCATAATAAGAACTG+AGG - chr1_2:75339887-75339906 None:intergenic 35.0%
GAAGGATATGGAAGAATAAG+GGG - chr1_2:75339934-75339953 None:intergenic 35.0%
GGAAGGATATGGAAGAATAA+GGG - chr1_2:75339935-75339954 None:intergenic 35.0%
TGGAAGGATATGGAAGAATA+AGG - chr1_2:75339936-75339955 None:intergenic 35.0%
GTATATGCATAAATCTCGCT+TGG + chr1_2:75340035-75340054 Msa0092660:intron 35.0%
ACATAATAAGGTATGCATGC+TGG + chr1_2:75340100-75340119 Msa0092660:intron 35.0%
GAAATATGTCCACATCAATC+TGG + chr1_2:75340129-75340148 Msa0092660:CDS 35.0%
AAGATGCTGGATTTCAAGAA+GGG + chr1_2:75340161-75340180 Msa0092660:CDS 35.0%
! TGAAGGTACACATTACTTGT+TGG + chr1_2:75340257-75340276 Msa0092660:intron 35.0%
! TTCTTGATATATGGGGTACT+AGG - chr1_2:75340408-75340427 None:intergenic 35.0%
CAAGAAAGACTTCTGATATG+AGG + chr1_2:75340422-75340441 Msa0092660:intron 35.0%
! TGCCTTTAATCGGAGAATTT+TGG + chr1_2:75340494-75340513 Msa0092660:intron 35.0%
!! GTTCAAACGCAATATTTTGG+TGG + chr1_2:75340559-75340578 Msa0092660:intron 35.0%
! ATAATCGAGTCCGTTTTGTA+AGG + chr1_2:75340707-75340726 Msa0092660:intron 35.0%
!!! TGTCATTTTAGTATAGTCGG+GGG + chr1_2:75340895-75340914 Msa0092660:intron 35.0%
GGAAAACTACAGAACTTCAA+AGG - chr1_2:75340953-75340972 None:intergenic 35.0%
! GTTCTGTAGTTTTCCATACA+AGG + chr1_2:75340958-75340977 Msa0092660:intron 35.0%
TGTGGCGTGAATAAGAATAA+AGG + chr1_2:75341077-75341096 Msa0092660:intron 35.0%
GTGAGGAAGTAATTTCAGTT+GGG + chr1_2:75341121-75341140 Msa0092660:intron 35.0%
TGAGGAAGTAATTTCAGTTG+GGG + chr1_2:75341122-75341141 Msa0092660:intron 35.0%
CAAGGATCAATTTGACATAC+AGG + chr1_2:75341388-75341407 Msa0092660:intron 35.0%
ATCAATTTGACATACAGGTC+AGG + chr1_2:75341393-75341412 Msa0092660:intron 35.0%
! AAGGGTTTTTCTTGAAAGGA+CGG + chr1_2:75341448-75341467 Msa0092660:intron 35.0%
ACTATTGGAGGAGATGAATT+TGG + chr1_2:75341499-75341518 Msa0092660:intron 35.0%
AATGGAAAATGACTATGGCA+TGG + chr1_2:75341624-75341643 Msa0092660:intron 35.0%
! CTTTTCATTCCACTTCTGTT+AGG - chr1_2:75341739-75341758 None:intergenic 35.0%
CTAACAGAAGTGGAATGAAA+AGG + chr1_2:75341737-75341756 Msa0092660:intron 35.0%
TGTCACATCATTGTTGAATG+CGG + chr1_2:75341813-75341832 Msa0092660:intron 35.0%
!! TTTGTACAAGAGCACACTTT+TGG - chr1_2:75341845-75341864 None:intergenic 35.0%
! AAAAGTGTGCTCTTGTACAA+AGG + chr1_2:75341844-75341863 Msa0092660:intron 35.0%
AATCTGACAACTTCAACCTT+TGG + chr1_2:75341997-75342016 Msa0092660:intron 35.0%
ATCTGACAACTTCAACCTTT+GGG + chr1_2:75341998-75342017 Msa0092660:intron 35.0%
TTCATGTTTAGCAACAGCAT+AGG - chr1_2:75342075-75342094 None:intergenic 35.0%
ATTGATGAGAGGCAGATTAA+TGG + chr1_2:75342145-75342164 Msa0092660:intron 35.0%
TTGATACACCTGTTAGTTGA+AGG + chr1_2:75342439-75342458 Msa0092660:intron 35.0%
TGAGTTAAGCTTGTAGTTTG+TGG + chr1_2:75342466-75342485 Msa0092660:intron 35.0%
! GAGTTAAGCTTGTAGTTTGT+GGG + chr1_2:75342467-75342486 Msa0092660:intron 35.0%
!! TTTCTAAGTTGGTTGGAAGA+GGG - chr1_2:75342602-75342621 None:intergenic 35.0%
!! ATTTCTAAGTTGGTTGGAAG+AGG - chr1_2:75342603-75342622 None:intergenic 35.0%
! TTTTCCTTCACAAGGCTTAT+AGG - chr1_2:75342691-75342710 None:intergenic 35.0%
!!! GCATGTTATTTTCCTTCACA+AGG - chr1_2:75342699-75342718 None:intergenic 35.0%
GTGAAGGAAAATAACATGCT+CGG + chr1_2:75342700-75342719 Msa0092660:intron 35.0%
GCAAACATGCATAAACTTCT+AGG + chr1_2:75342757-75342776 Msa0092660:intron 35.0%
GCATTCTTTACCTTACAAAC+TGG - chr1_2:75342900-75342919 None:intergenic 35.0%
AAAGAAACTGTAGCATGTTC+TGG + chr1_2:75343153-75343172 Msa0092660:intron 35.0%
ACATATAATACGCTACCAAG+TGG + chr1_2:75343245-75343264 Msa0092660:intron 35.0%
CATATAATACGCTACCAAGT+GGG + chr1_2:75343246-75343265 Msa0092660:intron 35.0%
ATGGCTTAACCCATTTCTTA+CGG - chr1_2:75343663-75343682 None:intergenic 35.0%
ATTAAACACACTCCTACCAA+AGG - chr1_2:75344018-75344037 None:intergenic 35.0%
!! CATTTTGACAGAGTGAAGAG+CGG + chr1_2:75338604-75338623 Msa0092660:five_prime_UTR 40.0%
CTTCTCTTATTCCTGTTTCC+TGG + chr1_2:75338663-75338682 Msa0092660:CDS 40.0%
GTAGGGAAATGTGAAAACCT+TGG + chr1_2:75338780-75338799 Msa0092660:intron 40.0%
TAATAAGGCTGCTTCTGCTT+CGG + chr1_2:75338867-75338886 Msa0092660:CDS 40.0%
AACCAGCAGGTGAAAATGTT+CGG + chr1_2:75338893-75338912 Msa0092660:CDS 40.0%
CAGGTGAAAATGTTCGGTTT+CGG + chr1_2:75338899-75338918 Msa0092660:CDS 40.0%
TGAAAATGTTCGGTTTCGGT+TGG + chr1_2:75338903-75338922 Msa0092660:CDS 40.0%
TTTGCTCTCTTTCTTGAACC+TGG - chr1_2:75338946-75338965 None:intergenic 40.0%
!!! AGTTGTGGTTTTGGAATGAG+AGG + chr1_2:75339003-75339022 Msa0092660:CDS 40.0%
AGAGGTCAAAAATCTCGATC+TGG + chr1_2:75339021-75339040 Msa0092660:CDS 40.0%
TCAAAACCTCTCATGATACC+AGG - chr1_2:75339048-75339067 None:intergenic 40.0%
!! GGTATCATGAGAGGTTTTGA+AGG + chr1_2:75339048-75339067 Msa0092660:CDS 40.0%
!!! ATCATGAGAGGTTTTGAAGG+TGG + chr1_2:75339051-75339070 Msa0092660:CDS 40.0%
CCTGCAATTCCTCTAAGTTT+GGG - chr1_2:75339102-75339121 None:intergenic 40.0%
TCCTGCAATTCCTCTAAGTT+TGG - chr1_2:75339103-75339122 None:intergenic 40.0%
AAACTTAGAGGAATTGCAGG+AGG + chr1_2:75339102-75339121 Msa0092660:CDS 40.0%
AAAAAGGGCAACCTATTAGC+GGG - chr1_2:75339457-75339476 None:intergenic 40.0%
CTATGTCTACCAGATTGATG+TGG - chr1_2:75340141-75340160 None:intergenic 40.0%
GAAGATGCTGGATTTCAAGA+AGG + chr1_2:75340160-75340179 Msa0092660:CDS 40.0%
AGATGCTGGATTTCAAGAAG+GGG + chr1_2:75340162-75340181 Msa0092660:CDS 40.0%
AAACGTGTGATTAACCCATC+AGG + chr1_2:75340214-75340233 Msa0092660:CDS 40.0%
TGTGATTAACCCATCAGGAA+GGG + chr1_2:75340219-75340238 Msa0092660:CDS 40.0%
GGAACGGAAACTTCTATTGA+AGG + chr1_2:75340240-75340259 Msa0092660:CDS 40.0%
TTGGAATATAAGAGGTCCGT+TGG + chr1_2:75340615-75340634 Msa0092660:intron 40.0%
GATTATGCGGTTGAGAAACA+CGG - chr1_2:75340693-75340712 None:intergenic 40.0%
! ACAAAACGGACTCGATTATG+CGG - chr1_2:75340706-75340725 None:intergenic 40.0%
ATATACTCCCAACTCCTTGA+TGG - chr1_2:75341045-75341064 None:intergenic 40.0%
GGTGAGGAAGTAATTTCAGT+TGG + chr1_2:75341120-75341139 Msa0092660:intron 40.0%
GTTGGATCAACAAGTTTGAG+AGG + chr1_2:75341158-75341177 Msa0092660:intron 40.0%
!! CATATGAAATAGGTGTTGGG+AGG + chr1_2:75341187-75341206 Msa0092660:intron 40.0%
ATAAGTCATCTGTGTAGCCA+TGG + chr1_2:75341219-75341238 Msa0092660:intron 40.0%
AAACAAAGCTTGTCCTTCCA+TGG - chr1_2:75341239-75341258 None:intergenic 40.0%
TTATGACACATCACCCAAGT+CGG - chr1_2:75341282-75341301 None:intergenic 40.0%
!! AATGGGTTACGAATCATGGA+TGG - chr1_2:75341324-75341343 None:intergenic 40.0%
TCCATGATTCGTAACCCATT+TGG + chr1_2:75341324-75341343 Msa0092660:intron 40.0%
!! ACCAAATGGGTTACGAATCA+TGG - chr1_2:75341328-75341347 None:intergenic 40.0%
TTTGTTGGGTATGAAGCAAG+AGG + chr1_2:75341350-75341369 Msa0092660:intron 40.0%
TTGTTGGGTATGAAGCAAGA+GGG + chr1_2:75341351-75341370 Msa0092660:intron 40.0%
AAATGACTATGGCATGGAAG+TGG + chr1_2:75341630-75341649 Msa0092660:intron 40.0%
! TTTTTATTCTCCTCTGCCCT+AGG - chr1_2:75341667-75341686 None:intergenic 40.0%
GGAAAAGATGTCTTTATGGG+TGG + chr1_2:75341758-75341777 Msa0092660:intron 40.0%
GAACCAATGAAGAACAAAGC+TGG + chr1_2:75341780-75341799 Msa0092660:intron 40.0%
!! CTTCCAGCTTTGTTCTTCAT+TGG - chr1_2:75341786-75341805 None:intergenic 40.0%
CATTAGGTCTTCATGCATGT+AGG - chr1_2:75341902-75341921 None:intergenic 40.0%
ATACGAGATTCGTTGTTCGA+TGG - chr1_2:75341929-75341948 None:intergenic 40.0%
AGTAGCCAAGGTGATATCAA+AGG + chr1_2:75341949-75341968 Msa0092660:intron 40.0%
CTTTGCCTTTGATATCACCT+TGG - chr1_2:75341957-75341976 None:intergenic 40.0%
TGAGCTTGAAGATGAAGTTG+TGG + chr1_2:75342027-75342046 Msa0092660:intron 40.0%
GAGCTTGAAGATGAAGTTGT+GGG + chr1_2:75342028-75342047 Msa0092660:intron 40.0%
AGCTTGAAGATGAAGTTGTG+GGG + chr1_2:75342029-75342048 Msa0092660:intron 40.0%
GCTGTTGCTAAACATGAAGA+TGG + chr1_2:75342077-75342096 Msa0092660:intron 40.0%
AGAGCAACACAAAGTTTGAG+AGG + chr1_2:75342226-75342245 Msa0092660:intron 40.0%
AAAGAGTTCTTTGGCATGAC+TGG + chr1_2:75342264-75342283 Msa0092660:intron 40.0%
AAGAGTTCTTTGGCATGACT+GGG + chr1_2:75342265-75342284 Msa0092660:intron 40.0%
AGGATAAGGTGAAACTTGAG+AGG + chr1_2:75342410-75342429 Msa0092660:intron 40.0%
CTCAAACTCCTTCAACTAAC+AGG - chr1_2:75342450-75342469 None:intergenic 40.0%
GTTTCGGCAAAAAACCTTAC+CGG + chr1_2:75342655-75342674 Msa0092660:intron 40.0%
CAAAAAACCTTACCGGAAGA+TGG + chr1_2:75342662-75342681 Msa0092660:intron 40.0%
GAAAATAACATGCTCGGCAA+CGG + chr1_2:75342706-75342725 Msa0092660:intron 40.0%
!! GTTCTGGATCCAGGTTTTTA+GGG - chr1_2:75342804-75342823 None:intergenic 40.0%
!! ACCTTACAAACTGGTCTTGT+CGG - chr1_2:75342891-75342910 None:intergenic 40.0%
AAGAATGCCCAAGCTCTATT+TGG + chr1_2:75342912-75342931 Msa0092660:intron 40.0%
AGAATGCCCAAGCTCTATTT+GGG + chr1_2:75342913-75342932 Msa0092660:intron 40.0%
! AGGACTGAATATTTGGAGTG+AGG - chr1_2:75342953-75342972 None:intergenic 40.0%
CACACTCAGGACTGAATATT+TGG - chr1_2:75342960-75342979 None:intergenic 40.0%
! TCTGGTTTCCTCATAAACTC+AGG + chr1_2:75343321-75343340 Msa0092660:intron 40.0%
!!! GCAAGATTTTTGGCAACTGA+TGG - chr1_2:75343682-75343701 None:intergenic 40.0%
CATACCGAAAGTTCTTGGTT+CGG + chr1_2:75344120-75344139 Msa0092660:three_prime_UTR 40.0%
CGCTCTTCACTCTGTCAAAA+TGG - chr1_2:75338606-75338625 None:intergenic 45.0%
TTGAATGGAGAAGCGAGAGA+GGG - chr1_2:75338692-75338711 None:intergenic 45.0%
! AACCGAACATTTTCACCTGC+TGG - chr1_2:75338898-75338917 None:intergenic 45.0%
TCGGTTTCGGTTGGACAATT+TGG + chr1_2:75338912-75338931 Msa0092660:CDS 45.0%
CGGTTTCGGTTGGACAATTT+GGG + chr1_2:75338913-75338932 Msa0092660:CDS 45.0%
CTCTTTCTTGAACCTGGTTG+TGG - chr1_2:75338940-75338959 None:intergenic 45.0%
AGAGCAAAGAGAAAGGGAAG+AGG + chr1_2:75338958-75338977 Msa0092660:CDS 45.0%
CAAAAATCTCGATCTGGACC+TGG + chr1_2:75339027-75339046 Msa0092660:CDS 45.0%
TTGGGCAATCGTCGATAAAG+TGG - chr1_2:75339084-75339103 None:intergenic 45.0%
CCCAAACTTAGAGGAATTGC+AGG + chr1_2:75339099-75339118 Msa0092660:CDS 45.0%
ATTGCGCAAAAGCTCCCATT+TGG - chr1_2:75339352-75339371 None:intergenic 45.0%
CTTGATCACTCCCTAACAGT+AGG - chr1_2:75339572-75339591 None:intergenic 45.0%
AGTATGCCTATTACAGGAGC+CGG + chr1_2:75339713-75339732 Msa0092660:intron 45.0%
CTGGTAGACATAGAAGATGC+TGG + chr1_2:75340148-75340167 Msa0092660:CDS 45.0%
TGGATTTCAAGAAGGGGAAG+AGG + chr1_2:75340168-75340187 Msa0092660:CDS 45.0%
GTGTGATTAACCCATCAGGA+AGG + chr1_2:75340218-75340237 Msa0092660:CDS 45.0%
TTAACCCATCAGGAAGGGAA+CGG + chr1_2:75340224-75340243 Msa0092660:CDS 45.0%
AAGAGGGCTTAGGTTTGAGA+GGG + chr1_2:75340862-75340881 Msa0092660:intron 45.0%
CTTCTCTACTCCCTATACCA+AGG - chr1_2:75340922-75340941 None:intergenic 45.0%
TTGGTATCAAGGCTCCATCA+AGG + chr1_2:75341028-75341047 Msa0092660:intron 45.0%
! AAAGGCACACATGGATGTCA+TGG + chr1_2:75341095-75341114 Msa0092660:intron 45.0%
AATGCTCCAAAACCCGACTT+GGG + chr1_2:75341266-75341285 Msa0092660:intron 45.0%
TATGACACATCACCCAAGTC+GGG - chr1_2:75341281-75341300 None:intergenic 45.0%
AGATTGAAGCTACCCTTGGA+CGG + chr1_2:75341473-75341492 Msa0092660:intron 45.0%
GAGTGAAGAAAAGAGTCGGT+CGG + chr1_2:75341536-75341555 Msa0092660:intron 45.0%
AAGAAAAGAGTCGGTCGGTT+TGG + chr1_2:75341541-75341560 Msa0092660:intron 45.0%
! GCATGGAAGTGGAAGTTGAT+CGG + chr1_2:75341641-75341660 Msa0092660:intron 45.0%
ACTTCTGTTAGGTTACCAGG+TGG - chr1_2:75341728-75341747 None:intergenic 45.0%
ACCTGGTAACCTAACAGAAG+TGG + chr1_2:75341727-75341746 Msa0092660:intron 45.0%
TCCACTTCTGTTAGGTTACC+AGG - chr1_2:75341731-75341750 None:intergenic 45.0%
CACATCATTGTTGAATGCGG+AGG + chr1_2:75341816-75341835 Msa0092660:intron 45.0%
!! GTACAAGAGCACACTTTTGG+TGG - chr1_2:75341842-75341861 None:intergenic 45.0%
GTGTGCTCTTGTACAAAGGA+TGG + chr1_2:75341848-75341867 Msa0092660:intron 45.0%
!! GTTGTTCGATGGTGGACATT+AGG - chr1_2:75341918-75341937 None:intergenic 45.0%
CGAATCTCGTATAGTAGCCA+AGG + chr1_2:75341937-75341956 Msa0092660:intron 45.0%
TGACAACTTCAACCTTTGGG+TGG + chr1_2:75342001-75342020 Msa0092660:intron 45.0%
CATCAATGCATGAGCCTATG+CGG - chr1_2:75342132-75342151 None:intergenic 45.0%
! TAGGCTCATGCATTGATGAG+AGG + chr1_2:75342134-75342153 Msa0092660:intron 45.0%
GCAACACAAAGTTTGAGAGG+CGG + chr1_2:75342229-75342248 Msa0092660:intron 45.0%
CAACACAAAGTTTGAGAGGC+GGG + chr1_2:75342230-75342249 Msa0092660:intron 45.0%
ACTGGGAGTCAAACTGTCAA+AGG + chr1_2:75342282-75342301 Msa0092660:intron 45.0%
CTGGGAGTCAAACTGTCAAA+GGG + chr1_2:75342283-75342302 Msa0092660:intron 45.0%
GTCTTGCTGCAGCTAGAATA+AGG - chr1_2:75342360-75342379 None:intergenic 45.0%
! TAGCTGCAGCAAGACTGTTT+TGG + chr1_2:75342365-75342384 Msa0092660:intron 45.0%
CCTCCTGTATGGTTCAGTTT+CGG + chr1_2:75342639-75342658 Msa0092660:intron 45.0%
TTGCCGAAACTGAACCATAC+AGG - chr1_2:75342645-75342664 None:intergenic 45.0%
GCTTATAGGAAGCCATCTTC+CGG - chr1_2:75342677-75342696 None:intergenic 45.0%
! GCTTCCTATAAGCCTTGTGA+AGG + chr1_2:75342684-75342703 Msa0092660:intron 45.0%
!!! TGGATCCAGGTTTTTAGGGT+TGG - chr1_2:75342800-75342819 None:intergenic 45.0%
!!! GGTTCTGGATCCAGGTTTTT+AGG - chr1_2:75342805-75342824 None:intergenic 45.0%
AAATACGCTGTTACCAGAGC+AGG - chr1_2:75342826-75342845 None:intergenic 45.0%
ACCGACAAGACCAGTTTGTA+AGG + chr1_2:75342887-75342906 Msa0092660:intron 45.0%
AGGCTTCCCAAATAGAGCTT+GGG - chr1_2:75342922-75342941 None:intergenic 45.0%
AAGGCTTCCCAAATAGAGCT+TGG - chr1_2:75342923-75342942 None:intergenic 45.0%
! TTTGGAGTGAGGACAAACGA+AGG - chr1_2:75342942-75342961 None:intergenic 45.0%
TATTCAGTCCTGAGTGTGTG+AGG + chr1_2:75342962-75342981 Msa0092660:intron 45.0%
ATTCAGTCCTGAGTGTGTGA+GGG + chr1_2:75342963-75342982 Msa0092660:intron 45.0%
ATACGCTACCAAGTGGGAAA+AGG + chr1_2:75343252-75343271 Msa0092660:intron 45.0%
! TTCCACGCTTTTCGTCACAA+TGG + chr1_2:75343451-75343470 Msa0092660:intron 45.0%
ATCCATTGTGACGAAAAGCG+TGG - chr1_2:75343456-75343475 None:intergenic 45.0%
!! GTTTGTTGTGCTCTGGTTTC+AGG + chr1_2:75343525-75343544 Msa0092660:intron 45.0%
!!! TGTGCTCTGGTTTCAGGTTT+TGG + chr1_2:75343531-75343550 Msa0092660:intron 45.0%
!!! GTGCTCTGGTTTCAGGTTTT+GGG + chr1_2:75343532-75343551 Msa0092660:intron 45.0%
AAGTTTCTCCTTCGCTGATG+TGG - chr1_2:75343605-75343624 None:intergenic 45.0%
AAGGAGAAACTTGAGTCTGC+TGG + chr1_2:75343613-75343632 Msa0092660:CDS 45.0%
TGTTCCATCACTGTGATTCC+TGG + chr1_2:75343637-75343656 Msa0092660:CDS 45.0%
TGATTCCTGGCCGTAAGAAA+TGG + chr1_2:75343650-75343669 Msa0092660:CDS 45.0%
GATTCCTGGCCGTAAGAAAT+GGG + chr1_2:75343651-75343670 Msa0092660:CDS 45.0%
TTAACCCATTTCTTACGGCC+AGG - chr1_2:75343658-75343677 None:intergenic 45.0%
! CTTCTTGGCGAAGTATTCGT+CGG - chr1_2:75343710-75343729 None:intergenic 45.0%
!! GTTTGCTTGTCGATTTGTGC+TGG + chr1_2:75343989-75344008 Msa0092660:three_prime_UTR 45.0%
CGATTTGTGCTGGAAACCTT+TGG + chr1_2:75343999-75344018 Msa0092660:three_prime_UTR 45.0%
TTGTGCTGGAAACCTTTGGT+AGG + chr1_2:75344003-75344022 Msa0092660:three_prime_UTR 45.0%
AGGTGCATACCGAAAGTTCT+TGG + chr1_2:75344115-75344134 Msa0092660:three_prime_UTR 45.0%
!!! TTTTATAAAAATAAAAGAAA+AGG - chr1_2:75340078-75340097 None:intergenic 5.0%
!!! TTTTATAAAAAAACATAATA+AGG + chr1_2:75340088-75340107 Msa0092660:intron 5.0%
AGAGAGGGTAACCAGGAAAC+AGG - chr1_2:75338677-75338696 None:intergenic 50.0%
CTTGAATGGAGAAGCGAGAG+AGG - chr1_2:75338693-75338712 None:intergenic 50.0%
CTCTCTCGCTTCTCCATTCA+AGG + chr1_2:75338691-75338710 Msa0092660:CDS 50.0%
GACAATTTGGGTCCACAACC+AGG + chr1_2:75338925-75338944 Msa0092660:CDS 50.0%
! CAAGGAGCGAGTTGTGGTTT+TGG + chr1_2:75338994-75339013 Msa0092660:CDS 50.0%
TCTGGACCTGGTATCATGAG+AGG + chr1_2:75339039-75339058 Msa0092660:CDS 50.0%
CGACGATTGCCCAAACTTAG+AGG + chr1_2:75339090-75339109 Msa0092660:CDS 50.0%
GCATATCCGGCTCCTGTAAT+AGG - chr1_2:75339722-75339741 None:intergenic 50.0%
GTTTCCGTTCCCTTCCTGAT+GGG - chr1_2:75340231-75340250 None:intergenic 50.0%
AGTTTCCGTTCCCTTCCTGA+TGG - chr1_2:75340232-75340251 None:intergenic 50.0%
GAAGAGGGCTTAGGTTTGAG+AGG + chr1_2:75340861-75340880 Msa0092660:intron 50.0%
TTAGTATAGTCGGGGGTCCT+TGG + chr1_2:75340902-75340921 Msa0092660:intron 50.0%
TCAAGGCTCCATCAAGGAGT+TGG + chr1_2:75341034-75341053 Msa0092660:intron 50.0%
CAAGGCTCCATCAAGGAGTT+GGG + chr1_2:75341035-75341054 Msa0092660:intron 50.0%
GCACACATGGATGTCATGGA+TGG + chr1_2:75341099-75341118 Msa0092660:intron 50.0%
CATGGATGTCATGGATGGTG+AGG + chr1_2:75341104-75341123 Msa0092660:intron 50.0%
TGGGGAAGATGCATCTGTGT+TGG + chr1_2:75341140-75341159 Msa0092660:intron 50.0%
GTCATCTGTGTAGCCATGGA+AGG + chr1_2:75341223-75341242 Msa0092660:intron 50.0%
CAATGCTCCAAAACCCGACT+TGG + chr1_2:75341265-75341284 Msa0092660:intron 50.0%
! ACATCACCCAAGTCGGGTTT+TGG - chr1_2:75341275-75341294 None:intergenic 50.0%
GGTTACGAATCATGGATGGC+TGG - chr1_2:75341320-75341339 None:intergenic 50.0%
AGGGCTTGTGCATGAATGCA+AGG + chr1_2:75341370-75341389 Msa0092660:intron 50.0%
GGCAAGATTGAAGCTACCCT+TGG + chr1_2:75341469-75341488 Msa0092660:intron 50.0%
GATTGAAGCTACCCTTGGAC+GGG + chr1_2:75341474-75341493 Msa0092660:intron 50.0%
TCCAATAGTGACCCGTCCAA+GGG - chr1_2:75341488-75341507 None:intergenic 50.0%
! AAGTGGAAGTTGATCGGCCT+AGG + chr1_2:75341647-75341666 Msa0092660:intron 50.0%
! AGTGGAAGTTGATCGGCCTA+GGG + chr1_2:75341648-75341667 Msa0092660:intron 50.0%
ATTACCGAACAGGGGACAGT+AGG + chr1_2:75341689-75341708 Msa0092660:intron 50.0%
CAATCCTACTGTCCCCTGTT+CGG - chr1_2:75341696-75341715 None:intergenic 50.0%
CGAGATTCGTTGTTCGATGG+TGG - chr1_2:75341926-75341945 None:intergenic 50.0%
TCAAGCTCAATGCCACCCAA+AGG - chr1_2:75342016-75342035 None:intergenic 50.0%
TTCAAAGAGGCTGACCGCAT+AGG + chr1_2:75342115-75342134 Msa0092660:intron 50.0%
GCAGGCGTCAAAGAGTTCTT+TGG + chr1_2:75342255-75342274 Msa0092660:intron 50.0%
! GCTTGTAGTTTGTGGGAGCT+AGG + chr1_2:75342474-75342493 Msa0092660:intron 50.0%
GGCCAACTGAAGACTCATCA+GGG - chr1_2:75342581-75342600 None:intergenic 50.0%
TGCTCTTTGAGCCTCCTGTA+TGG + chr1_2:75342628-75342647 Msa0092660:intron 50.0%
CCGAAACTGAACCATACAGG+AGG - chr1_2:75342642-75342661 None:intergenic 50.0%
TAGGAAGCCATCTTCCGGTA+AGG - chr1_2:75342672-75342691 None:intergenic 50.0%
!! TCTAGGGTTAGCCTTGACGA+CGG + chr1_2:75342774-75342793 Msa0092660:intron 50.0%
!! CTGGTCTTGTCGGTTCAGTT+AGG - chr1_2:75342881-75342900 None:intergenic 50.0%
TTCAGTCCTGAGTGTGTGAG+GGG + chr1_2:75342964-75342983 Msa0092660:intron 50.0%
CTACCAAGTGGGAAAAGGCA+TGG + chr1_2:75343257-75343276 Msa0092660:intron 50.0%
! TGCCTTTTCCACATCAGCGA+AGG + chr1_2:75343594-75343613 Msa0092660:CDS 50.0%
CTCCTTCGCTGATGTGGAAA+AGG - chr1_2:75343599-75343618 None:intergenic 50.0%
! GTCGGCACGTGCAAGATTTT+TGG - chr1_2:75343692-75343711 None:intergenic 50.0%
! GGCACCGAACCAAGAACTTT+CGG - chr1_2:75344127-75344146 None:intergenic 50.0%
AGAAGCGAGAGAGGGTAACC+AGG - chr1_2:75338684-75338703 None:intergenic 55.0%
TCTGCTTCGGTGAAACCAGC+AGG + chr1_2:75338880-75338899 Msa0092660:CDS 55.0%
!! AAGGGAAGAGGTATTGCCGC+AGG + chr1_2:75338970-75338989 Msa0092660:CDS 55.0%
!! AGAGGTATTGCCGCAGGACA+AGG + chr1_2:75338976-75338995 Msa0092660:CDS 55.0%
ACAACTCGCTCCTTGTCCTG+CGG - chr1_2:75338989-75339008 None:intergenic 55.0%
!! AGAAGGGGAAGAGGTGTCTC+TGG + chr1_2:75340177-75340196 Msa0092660:CDS 55.0%
! GGTGTCTCTGGAGACACTGA+CGG + chr1_2:75340189-75340208 Msa0092660:CDS 55.0%
TAGTCGGGGGTCCTTGGTAT+AGG + chr1_2:75340908-75340927 Msa0092660:intron 55.0%
AGTCGGGGGTCCTTGGTATA+GGG + chr1_2:75340909-75340928 Msa0092660:intron 55.0%
ACCCTTGGACGGGTCACTAT+TGG + chr1_2:75341484-75341503 Msa0092660:intron 55.0%
CTCCAATAGTGACCCGTCCA+AGG - chr1_2:75341489-75341508 None:intergenic 55.0%
CTTGGACGGGTCACTATTGG+AGG + chr1_2:75341487-75341506 Msa0092660:intron 55.0%
CAGGGGACAGTAGGATTGCA+AGG + chr1_2:75341698-75341717 Msa0092660:intron 55.0%
GGATTGCAAGGTCAACCACC+TGG + chr1_2:75341710-75341729 Msa0092660:intron 55.0%
AAGTTTGAGAGGCGGGATGC+AGG + chr1_2:75342237-75342256 Msa0092660:intron 55.0%
GGCCCTGATGAGTCTTCAGT+TGG + chr1_2:75342576-75342595 Msa0092660:intron 55.0%
GGGCCAACTGAAGACTCATC+AGG - chr1_2:75342582-75342601 None:intergenic 55.0%
!! TTTAGGGTTGGCCGTCGTCA+AGG - chr1_2:75342788-75342807 None:intergenic 55.0%
GACGGCCAACCCTAAAAACC+TGG + chr1_2:75342792-75342811 Msa0092660:intron 55.0%
GCTGTTACCAGAGCAGGTTC+TGG - chr1_2:75342820-75342839 None:intergenic 55.0%
! CCACCATGCCTTTTCCCACT+TGG - chr1_2:75343263-75343282 None:intergenic 55.0%
! CCAAGTGGGAAAAGGCATGG+TGG + chr1_2:75343260-75343279 Msa0092660:intron 55.0%
! AGTGGGAAAAGGCATGGTGG+TGG + chr1_2:75343263-75343282 Msa0092660:intron 55.0%
ACGGCCAGGAATCACAGTGA+TGG - chr1_2:75343644-75343663 None:intergenic 55.0%
AGCAGCTGCTTCTCGCTTCT+TGG - chr1_2:75343725-75343744 None:intergenic 55.0%
GCAGGACAAGGAGCGAGTTG+TGG + chr1_2:75338988-75339007 Msa0092660:CDS 60.0%
AGTTGATCGGCCTAGGGCAG+AGG + chr1_2:75341654-75341673 Msa0092660:intron 60.0%
!! CCAGAGCAGGTTCTGGATCC+AGG - chr1_2:75342813-75342832 None:intergenic 60.0%
CCTGGATCCAGAACCTGCTC+TGG + chr1_2:75342810-75342829 Msa0092660:intron 60.0%
AGTCCTGAGTGTGTGAGGGG+AGG + chr1_2:75342967-75342986 Msa0092660:intron 60.0%
ACACCTCCCCTCACACACTC+AGG - chr1_2:75342973-75342992 None:intergenic 60.0%
CATGCTCGGCAACGGCAGTG+CGG + chr1_2:75342714-75342733 Msa0092660:intron 65.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 75338556 75344188 75338556 ID=Msa0092660;Name=Msa0092660
chr1_2 mRNA 75338556 75344188 75338556 ID=Msa0092660-mRNA-1;Parent=Msa0092660;Name=Msa0092660-mRNA-1;_AED=0.01;_eAED=0.01;_QI=94|1|1|1|1|1|4|423|257
chr1_2 exon 75338556 75338712 75338556 ID=Msa0092660-mRNA-1:exon:26504;Parent=Msa0092660-mRNA-1
chr1_2 exon 75338784 75339123 75338784 ID=Msa0092660-mRNA-1:exon:26505;Parent=Msa0092660-mRNA-1
chr1_2 exon 75340110 75340261 75340110 ID=Msa0092660-mRNA-1:exon:26506;Parent=Msa0092660-mRNA-1
chr1_2 exon 75343547 75344188 75343547 ID=Msa0092660-mRNA-1:exon:26507;Parent=Msa0092660-mRNA-1
chr1_2 five_prime_UTR 75338556 75338649 75338556 ID=Msa0092660-mRNA-1:five_prime_utr;Parent=Msa0092660-mRNA-1
chr1_2 CDS 75338650 75338712 75338650 ID=Msa0092660-mRNA-1:cds;Parent=Msa0092660-mRNA-1
chr1_2 CDS 75338784 75339123 75338784 ID=Msa0092660-mRNA-1:cds;Parent=Msa0092660-mRNA-1
chr1_2 CDS 75340110 75340261 75340110 ID=Msa0092660-mRNA-1:cds;Parent=Msa0092660-mRNA-1
chr1_2 CDS 75343547 75343765 75343547 ID=Msa0092660-mRNA-1:cds;Parent=Msa0092660-mRNA-1
chr1_2 three_prime_UTR 75343766 75344188 75343766 ID=Msa0092660-mRNA-1:three_prime_utr;Parent=Msa0092660-mRNA-1
Gene Sequence

>Msa0092660

ATGAGTGCTGCTGCTTCTCTTATTCCTGTTTCCTGGTTACCCTCTCTCGCTTCTCCATTCAAGGGAAATGTGAAAACCTTGGTAGCAAAACCATATCTATGTCCATGTCTTAAAATTCAGCGAATGAAACCTCGTGTTTTTGTTGTTAATAAGGCTGCTTCTGCTTCGGTGAAACCAGCAGGTGAAAATGTTCGGTTTCGGTTGGACAATTTGGGTCCACAACCAGGTTCAAGAAAGAGAGCAAAGAGAAAGGGAAGAGGTATTGCCGCAGGACAAGGAGCGAGTTGTGGTTTTGGAATGAGAGGTCAAAAATCTCGATCTGGACCTGGTATCATGAGAGGTTTTGAAGGTGGTCAGATGCCACTTTATCGACGATTGCCCAAACTTAGAGGAATTGCAGGAGGTATGCATGCTGGATTGCCGAAATATGTCCACATCAATCTGGTAGACATAGAAGATGCTGGATTTCAAGAAGGGGAAGAGGTGTCTCTGGAGACACTGACGGAGAAACGTGTGATTAACCCATCAGGAAGGGAACGGAAACTTCTATTGAAGGTTTTGGGTGAAGGAGAACTAAGCAAGAAGTTGACAATAAAAGCTGGTGCCTTTTCCACATCAGCGAAGGAGAAACTTGAGTCTGCTGGTTGTTCCATCACTGTGATTCCTGGCCGTAAGAAATGGGTTAAGCCATCAGTTGCCAAAAATCTTGCACGTGCCGACGAATACTTCGCCAAGAAGCGAGAAGCAGCTGCTTCTGAACCAGATTCTGTTTAA

Protein sequence

>Msa0092660

MSAAASLIPVSWLPSLASPFKGNVKTLVAKPYLCPCLKIQRMKPRVFVVNKAASASVKPAGENVRFRLDNLGPQPGSRKRAKRKGRGIAAGQGASCGFGMRGQKSRSGPGIMRGFEGGQMPLYRRLPKLRGIAGGMHAGLPKYVHINLVDIEDAGFQEGEEVSLETLTEKRVINPSGRERKLLLKVLGEGELSKKLTIKAGAFSTSAKEKLESAGCSITVIPGRKKWVKPSVAKNLARADEYFAKKREAAASEPDSV*