AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0352510


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0352510 MtrunA17_Chr3g0087781 90.459 283 12 4 43 315 1 278 4.77e-173 480
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0352510 AT5G26880.1 64.453 256 83 3 64 314 10 262 1.18e-116 337

Find 95 sgRNAs with CRISPR-Local

Find 438 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATGCCCTTGATCAGGTTTC+AGG 0.229973 3_1:-21495362 None:intergenic
GTGAGATAATGTGGTTATTA+TGG 0.269544 3_1:+21488843 None:intergenic
CAAATTAACTCTCCTAAAAT+AGG 0.278972 3_1:-21495387 None:intergenic
CAACTAAACTAGACGTTTGT+TGG 0.299421 3_1:+21495587 Msa0352510:three_prime_UTR
TTGTTAAAATTCACGATTCT+TGG 0.300968 3_1:+21494280 Msa0352510:CDS
GGTAGTGAGAGAAGAGGAAA+TGG 0.326197 3_1:-21489119 None:intergenic
CTGTTGGACTACACTTAGTT+GGG 0.340052 3_1:+21492888 Msa0352510:CDS
CTGCTGCTGCTGCTAGGTTG+AGG 0.342733 3_1:-21489015 None:intergenic
TTGCAATCTAACAACGCTTC+AGG 0.351137 3_1:-21495062 None:intergenic
CAATCCAGCTCGCTTTAGTT+TGG 0.371247 3_1:-21493244 None:intergenic
TGTTGTTCTTGGTAGATTCC+AGG 0.384664 3_1:+21492827 Msa0352510:intron
GCAATGCAGCCAGTGTTTCC+TGG 0.391133 3_1:-21492845 None:intergenic
ACACTTCAGTCTGGTTGAAC+TGG 0.393113 3_1:+21495526 Msa0352510:three_prime_UTR
GCCAGTTCAACTAGTTGAAT+CGG 0.406523 3_1:+21495467 Msa0352510:three_prime_UTR
TGCTGCTGCTGCTAGGTTGA+GGG 0.408927 3_1:-21489014 None:intergenic
ACTAGTTGAACTGGCCGGTT+CGG 0.409751 3_1:-21495459 None:intergenic
CTGACATATGTTTCAACCAT+TGG 0.414032 3_1:-21495119 None:intergenic
GTTTGGATCGAAAATGAAAA+GGG 0.415927 3_1:-21489048 None:intergenic
AGTCTCAAGGCAACAGGAAA+TGG 0.416150 3_1:-21488986 None:intergenic
TGTTAAAATTCACGATTCTT+GGG 0.421970 3_1:+21494281 Msa0352510:CDS
CCCGATTCAACTAGTTGAAC+TGG 0.424180 3_1:-21495468 None:intergenic
AATACAGAGAACATTCCCTT+TGG 0.424249 3_1:+21495308 Msa0352510:three_prime_UTR
AGTTGTGCTTGTTTCACCTC+AGG 0.425774 3_1:+21489466 Msa0352510:CDS
CAAACTAAAGCGAGCTGGAT+TGG 0.426885 3_1:+21493245 Msa0352510:CDS
TTATTTGGTGCTGAAACTAC+TGG 0.427265 3_1:+21495032 Msa0352510:CDS
TCATCCACCTTATATCCTAA+TGG 0.433769 3_1:-21493219 None:intergenic
ATCATGTTTACACTTCAGTC+TGG 0.436143 3_1:+21495517 Msa0352510:three_prime_UTR
ATACAGAGAACATTCCCTTT+GGG 0.443228 3_1:+21495309 Msa0352510:three_prime_UTR
GCTGTTGGACTACACTTAGT+TGG 0.447539 3_1:+21492887 Msa0352510:CDS
AGTGAGAGAAGAGGAAATGG+AGG 0.452854 3_1:-21489116 None:intergenic
AGCGAGCTGGATTGGACTAC+TGG 0.454007 3_1:+21493253 Msa0352510:CDS
TTGATAGTTCCACCACCATA+TGG 0.454641 3_1:-21495092 None:intergenic
CAACTAGTTGAATCGGGAAC+TGG 0.456728 3_1:+21495474 Msa0352510:three_prime_UTR
AGTTTGGATCGAAAATGAAA+AGG 0.457319 3_1:-21489049 None:intergenic
GATTTCAGTCTCAAGGCAAC+AGG 0.461105 3_1:-21488992 None:intergenic
TGACATATGTTTCAACCATT+GGG 0.461962 3_1:-21495118 None:intergenic
ATAGGACTATGCCCTTGATC+AGG 0.462101 3_1:-21495369 None:intergenic
AGGAGACAAGGTCATTTATG+AGG 0.467739 3_1:-21495652 None:intergenic
GAAGAGGAAATGGAGGGAAA+AGG 0.480575 3_1:-21489109 None:intergenic
TTGCCACATGGTGTTGGAGA+GGG 0.501044 3_1:+21489410 Msa0352510:CDS
TGAGTGTTCCACTTGGAACT+TGG 0.502912 3_1:-21488902 None:intergenic
CACTCTCTGCATCGGATAGA+CGG 0.514454 3_1:+21488926 Msa0352510:CDS
AAAATTCACGATTCTTGGGA+AGG 0.519743 3_1:+21494285 Msa0352510:CDS
TGGTACAGGAAGGTGAAAAG+AGG 0.523032 3_1:+21494409 Msa0352510:intron
GGTAGTTTGCCACATGGTGT+TGG 0.523607 3_1:+21489404 Msa0352510:CDS
CATGACCTGAAACCTGATCA+AGG 0.526495 3_1:+21495357 Msa0352510:three_prime_UTR
GATTGCAAAACTGAACCATA+TGG 0.527813 3_1:+21495077 Msa0352510:CDS
CCAGTTCAACTAGTTGAATC+GGG 0.536810 3_1:+21495468 Msa0352510:three_prime_UTR
TCGGGAACTGGCGAGTTCGT+TGG 0.539187 3_1:+21495486 Msa0352510:three_prime_UTR
GAGAATGAGATAAAGAAGGA+AGG 0.539421 3_1:+21489383 Msa0352510:CDS
CAATGGTTGAAACATATGTC+AGG 0.541341 3_1:+21495120 Msa0352510:CDS
ACATGTGCAGCATCAGCTGT+TGG 0.543758 3_1:+21492872 Msa0352510:CDS
ATGGAGGGAAAAGGTGAGGT+GGG 0.544197 3_1:-21489100 None:intergenic
TGCCACATGGTGTTGGAGAG+GGG 0.544512 3_1:+21489411 Msa0352510:CDS
TGCTGAGAATGAGATAAAGA+AGG 0.546980 3_1:+21489379 Msa0352510:CDS
GTTGCTAGCATTTACAAAGA+GGG 0.563609 3_1:+21494431 Msa0352510:CDS
GTTGAGGGATTTCAGTCTCA+AGG 0.565764 3_1:-21488999 None:intergenic
GCAGCAGCATTGTGAAGCGA+TGG 0.573322 3_1:+21488958 Msa0352510:CDS
TTGAATCTATCAGTAAGTGT+TGG 0.576824 3_1:+21495146 Msa0352510:CDS
ATTACTGGTAGTGAGAGAAG+AGG 0.577119 3_1:-21489125 None:intergenic
CAATCTAACAACGCTTCAGG+TGG 0.577296 3_1:-21495059 None:intergenic
TGGTAGATTCCAGGAAACAC+TGG 0.577588 3_1:+21492836 Msa0352510:intron
GAACTGGCGAGTTCGTTGGT+CGG 0.578482 3_1:+21495490 Msa0352510:three_prime_UTR
CGGTTTGACCACTTCAATCG+TGG 0.585514 3_1:-21495555 None:intergenic
GATACCAAACTAAAGCGAGC+TGG 0.587642 3_1:+21493240 Msa0352510:CDS
GTGAGAGAAGAGGAAATGGA+GGG 0.590075 3_1:-21489115 None:intergenic
GGTTGCTAGCATTTACAAAG+AGG 0.596965 3_1:+21494430 Msa0352510:CDS
AATGGAGGGAAAAGGTGAGG+TGG 0.597678 3_1:-21489101 None:intergenic
CAATTAAGAGAAAACCCAAA+GGG 0.603120 3_1:-21495323 None:intergenic
ACACTCACCACTCTCTGCAT+CGG 0.603314 3_1:+21488918 Msa0352510:CDS
CAAAACATTACGAGGAGACA+AGG 0.603854 3_1:-21495664 None:intergenic
GGAAATGGAGGGAAAAGGTG+AGG 0.608641 3_1:-21489104 None:intergenic
CGTCTATCCGATGCAGAGAG+TGG 0.609408 3_1:-21488925 None:intergenic
ATTCAACTAGTTGAACTGGC+CGG 0.609560 3_1:-21495464 None:intergenic
TTGCTAGCATTTACAAAGAG+GGG 0.609702 3_1:+21494432 Msa0352510:CDS
GTATCAATACATGTTTCTGA+AGG 0.615847 3_1:-21495221 None:intergenic
TGTTGGACTACACTTAGTTG+GGG 0.616424 3_1:+21492889 Msa0352510:CDS
GGAGACAAGGTCATTTATGA+GGG 0.617327 3_1:-21495651 None:intergenic
TTTGCCACATGGTGTTGGAG+AGG 0.620773 3_1:+21489409 Msa0352510:CDS
TCAGCCATTAGGATATAAGG+TGG 0.622589 3_1:+21493215 Msa0352510:intron
AGAAACATGTATTGATACTG+AGG 0.626640 3_1:+21495226 Msa0352510:CDS
ATGACCTGAAACCTGATCAA+GGG 0.629828 3_1:+21495358 Msa0352510:three_prime_UTR
AGAGTGGTGAGTGTTCCACT+TGG 0.640307 3_1:-21488909 None:intergenic
TCAATTAAGAGAAAACCCAA+AGG 0.646679 3_1:-21495324 None:intergenic
GGTTTGTACCACGATTGAAG+TGG 0.657466 3_1:+21495547 Msa0352510:three_prime_UTR
ATCCCCTCTCCAACACCATG+TGG 0.662675 3_1:-21489413 None:intergenic
AACATGTATTGATACTGAGG+AGG 0.664583 3_1:+21495229 Msa0352510:CDS
GCATGCTTCCAAGTTCCAAG+TGG 0.666688 3_1:+21488894 Msa0352510:CDS
TAGTTTAGTTGAATCATCCG+CGG 0.680304 3_1:-21495575 None:intergenic
TGGAACTATCAAGATCCCAA+TGG 0.684890 3_1:+21495103 Msa0352510:CDS
AAAACTGAACCATATGGTGG+TGG 0.685342 3_1:+21495083 Msa0352510:CDS
GTAAGCTGCAAAACATTACG+AGG 0.697801 3_1:-21495672 None:intergenic
AAGGAAGGTAGTTTGCCACA+TGG 0.704326 3_1:+21489398 Msa0352510:CDS
TGCAAAACTGAACCATATGG+TGG 0.723796 3_1:+21495080 Msa0352510:CDS
CGATTGAAGTGGTCAAACCG+CGG 0.746429 3_1:+21495558 Msa0352510:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAAAAACTTTATAAAATTAA+AGG + chr3_1:21490266-21490285 Msa0352510:intron 10.0%
!! AAAAGCTTATTAATTTAATT+AGG + chr3_1:21491211-21491230 Msa0352510:intron 10.0%
!!! AGTTTTTTTATGAATATTAT+CGG + chr3_1:21492260-21492279 Msa0352510:intron 10.0%
!!! TTTTATAATGAATAAAGAAT+TGG - chr3_1:21494613-21494632 None:intergenic 10.0%
!! TAATTAAAACAACAAAATCA+AGG - chr3_1:21489294-21489313 None:intergenic 15.0%
!!! GTTTTGTTTTTTTGTTTAAA+TGG + chr3_1:21489326-21489345 Msa0352510:intron 15.0%
!! ATAGTTATTCGTATATATTT+CGG - chr3_1:21489523-21489542 None:intergenic 15.0%
!!! ATTTTATGACTATTTCAAAA+AGG + chr3_1:21489659-21489678 Msa0352510:intron 15.0%
!! AGTAAAATTTAACAAAGTTA+GGG - chr3_1:21489686-21489705 None:intergenic 15.0%
!!! TATTTTAACAACTATCAATT+TGG - chr3_1:21489772-21489791 None:intergenic 15.0%
!!! ATTGATAGTTGTTAAAATAT+AGG + chr3_1:21489773-21489792 Msa0352510:intron 15.0%
!!! TTGATAGTTGTTAAAATATA+GGG + chr3_1:21489774-21489793 Msa0352510:intron 15.0%
!!! TTGTAATTTTTATATACTCA+GGG - chr3_1:21489950-21489969 None:intergenic 15.0%
!!! TTTGTAATTTTTATATACTC+AGG - chr3_1:21489951-21489970 None:intergenic 15.0%
!!! TAAAGAGTAAATATTCATTT+TGG - chr3_1:21490197-21490216 None:intergenic 15.0%
!!! ACATCTTATAATGTATATTT+TGG + chr3_1:21490362-21490381 Msa0352510:intron 15.0%
!!! TTTTGTATTTTTAGAACTAT+TGG + chr3_1:21490497-21490516 Msa0352510:intron 15.0%
!!! TTTGTATTTTTAGAACTATT+GGG + chr3_1:21490498-21490517 Msa0352510:intron 15.0%
!! AAATGTAATATACTCATATA+CGG - chr3_1:21491283-21491302 None:intergenic 15.0%
!! ATAGATATAGATAATAAATG+TGG - chr3_1:21491308-21491327 None:intergenic 15.0%
!! AACTGAAATAATAATAATTG+TGG - chr3_1:21491370-21491389 None:intergenic 15.0%
!! TCAATTGTAAAATTTATAGA+TGG - chr3_1:21491603-21491622 None:intergenic 15.0%
!!! GCTAATAATTATATTTTTGT+TGG + chr3_1:21492098-21492117 Msa0352510:intron 15.0%
!!! TAGTTTTTTTTTTTTTTACC+AGG + chr3_1:21493528-21493547 Msa0352510:intron 15.0%
!! TGCTATTATTAACATATATT+AGG - chr3_1:21493589-21493608 None:intergenic 15.0%
!! ATATGTTAATAATAGCAATT+TGG + chr3_1:21493592-21493611 Msa0352510:intron 15.0%
!! AAATTTGATACAATACTTAT+AGG + chr3_1:21494687-21494706 Msa0352510:intron 15.0%
!!! GTTTTTTCTTTTTTTACTTT+AGG + chr3_1:21494735-21494754 Msa0352510:intron 15.0%
!! ATATTACTTAATGTGTTAAA+CGG + chr3_1:21494897-21494916 Msa0352510:intron 15.0%
!!! CTTTTTTTGAAAACTTTGTA+TGG + chr3_1:21489226-21489245 Msa0352510:intron 20.0%
!! CATATATTCAAGTATTCAAA+TGG - chr3_1:21489546-21489565 None:intergenic 20.0%
!! CAGTAAAATTTAACAAAGTT+AGG - chr3_1:21489687-21489706 None:intergenic 20.0%
!!! TTAACTTAATTGATAGTAAG+TGG + chr3_1:21489799-21489818 Msa0352510:intron 20.0%
!! ATAGTAAGTGGTTAAATATA+GGG + chr3_1:21489811-21489830 Msa0352510:intron 20.0%
!! AGATTATGAATATTTCGAAA+AGG - chr3_1:21489867-21489886 None:intergenic 20.0%
!! TTCGAAATATTCATAATCTT+AGG + chr3_1:21489868-21489887 Msa0352510:intron 20.0%
!! TCGAAATATTCATAATCTTA+GGG + chr3_1:21489869-21489888 Msa0352510:intron 20.0%
!!! TGTAATTTTTATATACTCAG+GGG - chr3_1:21489949-21489968 None:intergenic 20.0%
!! TTGTCTTATGTTAGTTAATT+TGG + chr3_1:21490043-21490062 Msa0352510:intron 20.0%
!! CTTCTGTTATTAATTAATCA+TGG - chr3_1:21490101-21490120 None:intergenic 20.0%
!!! AATTTAGTCTTTGAAATTGT+AGG + chr3_1:21490615-21490634 Msa0352510:intron 20.0%
!! CTGTAATTATTATATTGAGA+GGG + chr3_1:21490968-21490987 Msa0352510:intron 20.0%
!! AATGTAATATACTCATATAC+GGG - chr3_1:21491282-21491301 None:intergenic 20.0%
!!! AAGATTTTAGATTATCTGTT+GGG - chr3_1:21491999-21492018 None:intergenic 20.0%
!!! TCATAATATTGGTTATTCTT+TGG - chr3_1:21492534-21492553 None:intergenic 20.0%
!!! AAAACTGTATATAGTTTTTG+AGG + chr3_1:21492574-21492593 Msa0352510:intron 20.0%
!! TTTGATATTTATGTTGTTCT+TGG + chr3_1:21492816-21492835 Msa0352510:intron 20.0%
!! TTGTATTTAATAGTGTATAG+TGG + chr3_1:21493087-21493106 Msa0352510:intron 20.0%
!! ATTGAAATCTTTATCTCATT+TGG + chr3_1:21493312-21493331 Msa0352510:intron 20.0%
!! TAGATGTACTAAATTTGAAA+AGG - chr3_1:21494153-21494172 None:intergenic 20.0%
!! TTAATGGAAACAAATATAAC+AGG - chr3_1:21494239-21494258 None:intergenic 20.0%
!! TTCAAAAGAAAATAAAGTCT+TGG - chr3_1:21494590-21494609 None:intergenic 20.0%
!!! TTTTGATAGACCATTAATTA+TGG + chr3_1:21494962-21494981 Msa0352510:intron 20.0%
!!! TTAATTACTGAAGACATTTT+TGG + chr3_1:21495257-21495276 Msa0352510:CDS 20.0%
!!! TATTTTAGGAGAGTTAATTT+GGG + chr3_1:21495389-21495408 Msa0352510:three_prime_UTR 20.0%
! ATTATAGAATGTTATACCTG+AGG - chr3_1:21489485-21489504 None:intergenic 25.0%
! ATAGTAGGTGGATAAATTTA+GGG + chr3_1:21489745-21489764 Msa0352510:intron 25.0%
! GATAGTAAGTGGTTAAATAT+AGG + chr3_1:21489810-21489829 Msa0352510:intron 25.0%
!!! GTATATTTTGGTAGTTTGTT+TGG + chr3_1:21490374-21490393 Msa0352510:intron 25.0%
!!! TCTTACAGTTTTAGAGAAAT+TGG + chr3_1:21490705-21490724 Msa0352510:intron 25.0%
!!! CAAAAGACAATTTTGATTCT+TGG + chr3_1:21490904-21490923 Msa0352510:intron 25.0%
!!! ACAATTTTGATTCTTGGTTA+AGG + chr3_1:21490910-21490929 Msa0352510:intron 25.0%
! GCTGTAATTATTATATTGAG+AGG + chr3_1:21490967-21490986 Msa0352510:intron 25.0%
! TAATTATTATATTGAGAGGG+CGG + chr3_1:21490971-21490990 Msa0352510:intron 25.0%
! GCTTATTAATTTAATTAGGC+CGG + chr3_1:21491215-21491234 Msa0352510:intron 25.0%
! CTTATTAATTTAATTAGGCC+GGG + chr3_1:21491216-21491235 Msa0352510:intron 25.0%
!! GTTATCATTTAAGACTCTTA+TGG + chr3_1:21491458-21491477 Msa0352510:intron 25.0%
! TAATAATCATACTTGACCTT+AGG - chr3_1:21491526-21491545 None:intergenic 25.0%
! TGAAATTTGTAACACAAACT+AGG + chr3_1:21491720-21491739 Msa0352510:intron 25.0%
!! GAAGATTTTAGATTATCTGT+TGG - chr3_1:21492000-21492019 None:intergenic 25.0%
!! AAGTTGTCATATTGATTAAC+TGG + chr3_1:21492145-21492164 Msa0352510:intron 25.0%
!! AGTTGTCATATTGATTAACT+GGG + chr3_1:21492146-21492165 Msa0352510:intron 25.0%
! TTTATGAATATTATCGGAGT+TGG + chr3_1:21492266-21492285 Msa0352510:intron 25.0%
! CTGTATTAAAATTGAGTACA+AGG + chr3_1:21492600-21492619 Msa0352510:intron 25.0%
! AAGAACGAAATAAGTAAAAG+TGG + chr3_1:21492639-21492658 Msa0352510:intron 25.0%
! AGAACGAAATAAGTAAAAGT+GGG + chr3_1:21492640-21492659 Msa0352510:intron 25.0%
! AAAGTAAATTTACAGTAGAG+GGG - chr3_1:21492745-21492764 None:intergenic 25.0%
! CAAAGTAAATTTACAGTAGA+GGG - chr3_1:21492746-21492765 None:intergenic 25.0%
! TAAAATCTCTCAATTACCAA+AGG + chr3_1:21492789-21492808 Msa0352510:intron 25.0%
! AAAATCTCTCAATTACCAAA+GGG + chr3_1:21492790-21492809 Msa0352510:intron 25.0%
! ATAAATATCAAAGAACCCTT+TGG - chr3_1:21492808-21492827 None:intergenic 25.0%
! ATATGATATATCCAAGGATA+CGG - chr3_1:21493279-21493298 None:intergenic 25.0%
! AAGCATATATGATATATCCA+AGG - chr3_1:21493285-21493304 None:intergenic 25.0%
!! TGTTGTTCAGTTTGATTTAA+CGG - chr3_1:21493426-21493445 None:intergenic 25.0%
! TGAAAAAATTGAACTGTGAT+GGG + chr3_1:21493447-21493466 Msa0352510:intron 25.0%
!! GACATTTCAGTTTTCTATTA+AGG + chr3_1:21493654-21493673 Msa0352510:intron 25.0%
! AAAATTATTAATGCGAGTAC+AGG + chr3_1:21493826-21493845 Msa0352510:intron 25.0%
! AAACAATTTCTCTTTACACA+CGG + chr3_1:21493930-21493949 Msa0352510:intron 25.0%
! TTAGATGAAACTATTAGATC+AGG - chr3_1:21494185-21494204 None:intergenic 25.0%
! TATCTGCAAATTTGTGTTAA+TGG - chr3_1:21494255-21494274 None:intergenic 25.0%
! TTGTTAAAATTCACGATTCT+TGG + chr3_1:21494280-21494299 Msa0352510:CDS 25.0%
! TGTTAAAATTCACGATTCTT+GGG + chr3_1:21494281-21494300 Msa0352510:CDS 25.0%
! AGAGAAATGCTATCATTAAA+GGG - chr3_1:21494508-21494527 None:intergenic 25.0%
! TAGAGAAATGCTATCATTAA+AGG - chr3_1:21494509-21494528 None:intergenic 25.0%
! TCAAACCAAACAAATTCTTA+TGG + chr3_1:21494636-21494655 Msa0352510:intron 25.0%
!! ATCATCCATAAGAATTTGTT+TGG - chr3_1:21494644-21494663 None:intergenic 25.0%
! TGATACAATACTTATAGGAA+TGG + chr3_1:21494692-21494711 Msa0352510:intron 25.0%
!! TATTTCAAAATTGTTGGTGA+TGG + chr3_1:21494773-21494792 Msa0352510:intron 25.0%
! TTTCCATATATTGTTTGCAA+CGG - chr3_1:21494855-21494874 None:intergenic 25.0%
! ATACAAGGAACCATAATTAA+TGG - chr3_1:21494975-21494994 None:intergenic 25.0%
!! AAAGGCGATTATCTTTTATT+TGG + chr3_1:21495017-21495036 Msa0352510:CDS 25.0%
! CAAATTAACTCTCCTAAAAT+AGG - chr3_1:21495390-21495409 None:intergenic 25.0%
!!! CTATTTTAGGAGAGTTAATT+TGG + chr3_1:21495388-21495407 Msa0352510:three_prime_UTR 25.0%
GTTTGGATCGAAAATGAAAA+GGG - chr3_1:21489051-21489070 None:intergenic 30.0%
AGTTTGGATCGAAAATGAAA+AGG - chr3_1:21489052-21489071 None:intergenic 30.0%
! TGTTTAAATGGTGTTCTAGA+TGG + chr3_1:21489338-21489357 Msa0352510:intron 30.0%
CGTATATATTTCGGTAAATC+TGG - chr3_1:21489514-21489533 None:intergenic 30.0%
TACAAAGTCACAGACTAATT+TGG - chr3_1:21489616-21489635 None:intergenic 30.0%
AGAATATGCTAAAGACTGAA+TGG + chr3_1:21489722-21489741 Msa0352510:intron 30.0%
GATAGTAGGTGGATAAATTT+AGG + chr3_1:21489744-21489763 Msa0352510:intron 30.0%
CTGACACTTTATTAGAGTTA+CGG + chr3_1:21489840-21489859 Msa0352510:intron 30.0%
ACTAGCAAAAGACAAATTCA+TGG - chr3_1:21489979-21489998 None:intergenic 30.0%
! AAGTATGTCGTTTGTTAGTT+TGG + chr3_1:21490012-21490031 Msa0352510:intron 30.0%
TGACTGTGATTCACATATAA+AGG + chr3_1:21490529-21490548 Msa0352510:intron 30.0%
GACTGTGATTCACATATAAA+GGG + chr3_1:21490530-21490549 Msa0352510:intron 30.0%
AGCAGTTGTATGATAAATCA+TGG + chr3_1:21490748-21490767 Msa0352510:intron 30.0%
TGATAAATCATGGAATTGCA+AGG + chr3_1:21490758-21490777 Msa0352510:intron 30.0%
! ATGGAATTGCAAGGTTATTT+TGG + chr3_1:21490767-21490786 Msa0352510:intron 30.0%
TAGAAATCATAATCCTCTCA+TGG + chr3_1:21490851-21490870 Msa0352510:intron 30.0%
AGAAATCATAATCCTCTCAT+GGG + chr3_1:21490852-21490871 Msa0352510:intron 30.0%
TTTGATTCTTGGTTAAGGAT+TGG + chr3_1:21490915-21490934 Msa0352510:intron 30.0%
TTGATTCTTGGTTAAGGATT+GGG + chr3_1:21490916-21490935 Msa0352510:intron 30.0%
ACTCATTTATTAAACGAGCT+AGG - chr3_1:21491174-21491193 None:intergenic 30.0%
!!! CTTTTTTATAAGCATAAGCC+CGG - chr3_1:21491237-21491256 None:intergenic 30.0%
TAATATACTCATATACGGGT+CGG - chr3_1:21491278-21491297 None:intergenic 30.0%
ATTGTGGTATGAGAATTTGA+AGG - chr3_1:21491354-21491373 None:intergenic 30.0%
!! TTGATTTGTGTGAACTGTTA+AGG + chr3_1:21491485-21491504 Msa0352510:intron 30.0%
ACAGAAACTCAAGAATAATC+AGG - chr3_1:21491580-21491599 None:intergenic 30.0%
!!! TCAAAGGCTTTATTTTAAGC+CGG - chr3_1:21491794-21491813 None:intergenic 30.0%
CTTAAAATAAAGCCTTTGAC+AGG + chr3_1:21491795-21491814 Msa0352510:intron 30.0%
GACAATGCATAAAATATGCA+AGG + chr3_1:21491934-21491953 Msa0352510:intron 30.0%
TGTGAATGTATACATGCTTA+AGG + chr3_1:21492122-21492141 Msa0352510:intron 30.0%
! GTTGTCATATTGATTAACTG+GGG + chr3_1:21492147-21492166 Msa0352510:intron 30.0%
GAGAAAATAATCTCTTCTCT+TGG - chr3_1:21492386-21492405 None:intergenic 30.0%
AACTCCTTAATACGCTAAAA+AGG + chr3_1:21492499-21492518 Msa0352510:intron 30.0%
!! AAGTCCTTTTTAGCGTATTA+AGG - chr3_1:21492506-21492525 None:intergenic 30.0%
GAACGAAATAAGTAAAAGTG+GGG + chr3_1:21492641-21492660 Msa0352510:intron 30.0%
CCAAAGTAAATTTACAGTAG+AGG - chr3_1:21492747-21492766 None:intergenic 30.0%
CCTCTACTGTAAATTTACTT+TGG + chr3_1:21492744-21492763 Msa0352510:intron 30.0%
GAAAAGATAGAGGAATACAA+AGG - chr3_1:21493197-21493216 None:intergenic 30.0%
! TTTTCAGCCATTAGGATATA+AGG + chr3_1:21493212-21493231 Msa0352510:intron 30.0%
! AAAAACTTTTCTACCATGCA+GGG + chr3_1:21493354-21493373 Msa0352510:intron 30.0%
!! TTTAACGGATCGTAAGTTTT+TGG - chr3_1:21493411-21493430 None:intergenic 30.0%
CTGAAAAAATTGAACTGTGA+TGG + chr3_1:21493446-21493465 Msa0352510:intron 30.0%
TGTAGTTCAGTTTAACAGTT+CGG + chr3_1:21493503-21493522 Msa0352510:intron 30.0%
TACAAATCGAATATTAAGCC+TGG - chr3_1:21493549-21493568 None:intergenic 30.0%
TCGTTCACAAAGAATTAGTT+TGG + chr3_1:21493621-21493640 Msa0352510:intron 30.0%
! AGAATTAGTTTGGTTCGAAA+AGG + chr3_1:21493631-21493650 Msa0352510:intron 30.0%
! GAATTAGTTTGGTTCGAAAA+GGG + chr3_1:21493632-21493651 Msa0352510:intron 30.0%
ATTAAGGACTAAAGTAGTTC+CGG + chr3_1:21493670-21493689 Msa0352510:intron 30.0%
AATTGTTTACTTGTTCCGAT+TGG - chr3_1:21493918-21493937 None:intergenic 30.0%
AGGAAGTTAATAGCATCAAA+AGG - chr3_1:21493981-21494000 None:intergenic 30.0%
!!! TCGTGATTATTTTTTGCAAC+AGG + chr3_1:21494311-21494330 Msa0352510:CDS 30.0%
! ATTCCAGGAACTTAACTTTT+AGG - chr3_1:21494347-21494366 None:intergenic 30.0%
TAAATGACATCATAAGAGAC+AGG - chr3_1:21494551-21494570 None:intergenic 30.0%
AGTCTTGGATATTTACTTTC+TGG - chr3_1:21494575-21494594 None:intergenic 30.0%
TCGTCATATTGCAATATTGT+TGG - chr3_1:21494667-21494686 None:intergenic 30.0%
! TCACGCTATTTCAAAATTGT+TGG + chr3_1:21494767-21494786 Msa0352510:intron 30.0%
!! AAACTTAGATATGGTGCTAT+AGG - chr3_1:21494829-21494848 None:intergenic 30.0%
CAACGGATAAAACTTAGATA+TGG - chr3_1:21494838-21494857 None:intergenic 30.0%
TATCCGTTGCAAACAATATA+TGG + chr3_1:21494849-21494868 Msa0352510:intron 30.0%
TTCCAAAACAAGGCAATATA+AGG + chr3_1:21494935-21494954 Msa0352510:intron 30.0%
!!! TTCCTTATATTGCCTTGTTT+TGG - chr3_1:21494940-21494959 None:intergenic 30.0%
TGACATATGTTTCAACCATT+GGG - chr3_1:21495121-21495140 None:intergenic 30.0%
TTGAATCTATCAGTAAGTGT+TGG + chr3_1:21495146-21495165 Msa0352510:CDS 30.0%
! GTATCAATACATGTTTCTGA+AGG - chr3_1:21495224-21495243 None:intergenic 30.0%
! AGAAACATGTATTGATACTG+AGG + chr3_1:21495226-21495245 Msa0352510:CDS 30.0%
CAATTAAGAGAAAACCCAAA+GGG - chr3_1:21495326-21495345 None:intergenic 30.0%
TCAATTAAGAGAAAACCCAA+AGG - chr3_1:21495327-21495346 None:intergenic 30.0%
TTGACGAAAAAGAGAGAGTT+TGG - chr3_1:21489068-21489087 None:intergenic 35.0%
TGCTGAGAATGAGATAAAGA+AGG + chr3_1:21489379-21489398 Msa0352510:CDS 35.0%
GAGAATGAGATAAAGAAGGA+AGG + chr3_1:21489383-21489402 Msa0352510:CDS 35.0%
AAAGTCACAGACTAATTTGG+TGG - chr3_1:21489613-21489632 None:intergenic 35.0%
CTAAAGACTGAATGGATAGT+AGG + chr3_1:21489730-21489749 Msa0352510:intron 35.0%
! CGTAACTCTAATAAAGTGTC+AGG - chr3_1:21489842-21489861 None:intergenic 35.0%
TTTGTATGGCACTCTCAAAT+AGG - chr3_1:21489896-21489915 None:intergenic 35.0%
!! AATTAGTCGCTGACTTTGTA+TGG - chr3_1:21489910-21489929 None:intergenic 35.0%
TACAAAGTCAGCGACTAATT+TGG + chr3_1:21489910-21489929 Msa0352510:intron 35.0%
! GAATTTGTCTTTTGCTAGTC+AGG + chr3_1:21489980-21489999 Msa0352510:intron 35.0%
AATAACAGAAGACACACTCA+AGG + chr3_1:21490110-21490129 Msa0352510:intron 35.0%
TGATATCGTCTCACACATTT+AGG + chr3_1:21490169-21490188 Msa0352510:intron 35.0%
! ATGCACTGATGAAGTAAAGT+AGG + chr3_1:21490233-21490252 Msa0352510:intron 35.0%
! TGCACTGATGAAGTAAAGTA+GGG + chr3_1:21490234-21490253 Msa0352510:intron 35.0%
ATTTGTCTTTGAACGTGAGA+CGG + chr3_1:21490302-21490321 Msa0352510:intron 35.0%
TATGTCTTTCGCTAGTAGTT+TGG + chr3_1:21490404-21490423 Msa0352510:intron 35.0%
TGGTCTTCGAATATGTTTGT+AGG + chr3_1:21490424-21490443 Msa0352510:intron 35.0%
GTCTTCTGTTAGAAATCTCA+AGG - chr3_1:21490463-21490482 None:intergenic 35.0%
TTCTAACAGAAGACACTCTT+TGG + chr3_1:21490469-21490488 Msa0352510:intron 35.0%
! CACAAACTAGGCTTTTAAAC+AGG + chr3_1:21491732-21491751 Msa0352510:intron 35.0%
! AGGCTTTTAAACAGGCTAAT+AGG + chr3_1:21491740-21491759 Msa0352510:intron 35.0%
!!! CAAAGGCTTTATTTTAAGCC+GGG - chr3_1:21491793-21491812 None:intergenic 35.0%
TAAAGCCTTTGACAGGTAAA+AGG + chr3_1:21491802-21491821 Msa0352510:intron 35.0%
TGCATAAAATATGCAAGGTC+CGG + chr3_1:21491939-21491958 Msa0352510:intron 35.0%
!!! TCTGTTGGGATCAAGTTTTT+TGG - chr3_1:21491985-21492004 None:intergenic 35.0%
TTAACTGGGGAAGTTTAGTT+AGG + chr3_1:21492160-21492179 Msa0352510:intron 35.0%
TAACTGGGGAAGTTTAGTTA+GGG + chr3_1:21492161-21492180 Msa0352510:intron 35.0%
CAGTGTTAAGTTTGTGCTAT+AGG + chr3_1:21492184-21492203 Msa0352510:intron 35.0%
AAGTTTGTGCTATAGGATTG+TGG + chr3_1:21492191-21492210 Msa0352510:intron 35.0%
! TAACCTAGTTCTTACCTCTT+TGG + chr3_1:21492321-21492340 Msa0352510:intron 35.0%
TAACCAAAGAGGTAAGAACT+AGG - chr3_1:21492327-21492346 None:intergenic 35.0%
GTTATGCAACACTGCTATAA+CGG + chr3_1:21493041-21493060 Msa0352510:intron 35.0%
TCATCCACCTTATATCCTAA+TGG - chr3_1:21493222-21493241 None:intergenic 35.0%
! GAAAAACTTTTCTACCATGC+AGG + chr3_1:21493353-21493372 Msa0352510:intron 35.0%
!! TCCCACAGTTTGGTTATTTT+CGG + chr3_1:21493480-21493499 Msa0352510:intron 35.0%
ACCGAAAATAACCAAACTGT+GGG - chr3_1:21493484-21493503 None:intergenic 35.0%
! TTTGTTATACCCGTTCAGTT+CGG + chr3_1:21493728-21493747 Msa0352510:intron 35.0%
! GTTTTACGGAACTGTTGTAA+TGG + chr3_1:21493750-21493769 Msa0352510:intron 35.0%
! TGACTCTAACCCTTTTACAA+TGG + chr3_1:21493849-21493868 Msa0352510:intron 35.0%
! GACTCTAACCCTTTTACAAT+GGG + chr3_1:21493850-21493869 Msa0352510:intron 35.0%
AACTTCGTCCCATTGTAAAA+GGG - chr3_1:21493861-21493880 None:intergenic 35.0%
TAACTTCGTCCCATTGTAAA+AGG - chr3_1:21493862-21493881 None:intergenic 35.0%
! AAGCTTTGTATACAAGCTAG+AGG + chr3_1:21493883-21493902 Msa0352510:intron 35.0%
TAGAGGATAATTGAGCCAAT+CGG + chr3_1:21493900-21493919 Msa0352510:intron 35.0%
!! TAGCATCAAAAGGAGTACTT+AGG - chr3_1:21493971-21493990 None:intergenic 35.0%
CTAGTAGACTGTTCGTTAAT+GGG - chr3_1:21494023-21494042 None:intergenic 35.0%
ACTAGTAGACTGTTCGTTAA+TGG - chr3_1:21494024-21494043 None:intergenic 35.0%
ATAAACCACGATAGACAGAT+AGG - chr3_1:21494054-21494073 None:intergenic 35.0%
AAAATTCACGATTCTTGGGA+AGG + chr3_1:21494285-21494304 Msa0352510:CDS 35.0%
CATCCTAAAAGTTAAGTTCC+TGG + chr3_1:21494341-21494360 Msa0352510:intron 35.0%
ATAATTACGACGAAGATTCC+AGG - chr3_1:21494362-21494381 None:intergenic 35.0%
CTGTACTTGTCTCCATTATT+TGG + chr3_1:21494389-21494408 Msa0352510:intron 35.0%
TTGTCTCCATTATTTGGTAC+AGG + chr3_1:21494395-21494414 Msa0352510:intron 35.0%
GTTGCTAGCATTTACAAAGA+GGG + chr3_1:21494431-21494450 Msa0352510:CDS 35.0%
TTGCTAGCATTTACAAAGAG+GGG + chr3_1:21494432-21494451 Msa0352510:CDS 35.0%
! CTCTCTTTTCTTCCAAAACA+AGG + chr3_1:21494925-21494944 Msa0352510:intron 35.0%
! CAGGACTTTTCATACAGAAA+AGG + chr3_1:21494999-21495018 Msa0352510:intron 35.0%
!! TTATTTGGTGCTGAAACTAC+TGG + chr3_1:21495032-21495051 Msa0352510:CDS 35.0%
GATTGCAAAACTGAACCATA+TGG + chr3_1:21495077-21495096 Msa0352510:CDS 35.0%
CTGACATATGTTTCAACCAT+TGG - chr3_1:21495122-21495141 None:intergenic 35.0%
CAATGGTTGAAACATATGTC+AGG + chr3_1:21495120-21495139 Msa0352510:CDS 35.0%
! AACATGTATTGATACTGAGG+AGG + chr3_1:21495229-21495248 Msa0352510:CDS 35.0%
AATACAGAGAACATTCCCTT+TGG + chr3_1:21495308-21495327 Msa0352510:three_prime_UTR 35.0%
ATACAGAGAACATTCCCTTT+GGG + chr3_1:21495309-21495328 Msa0352510:three_prime_UTR 35.0%
!! TTTTAAAAACTCGACCGAAC+CGG + chr3_1:21495445-21495464 Msa0352510:three_prime_UTR 35.0%
ATCATGTTTACACTTCAGTC+TGG + chr3_1:21495517-21495536 Msa0352510:three_prime_UTR 35.0%
TAGTTTAGTTGAATCATCCG+CGG - chr3_1:21495578-21495597 None:intergenic 35.0%
CAACTAAACTAGACGTTTGT+TGG + chr3_1:21495587-21495606 Msa0352510:three_prime_UTR 35.0%
! ATTACTGGTAGTGAGAGAAG+AGG - chr3_1:21489128-21489147 None:intergenic 40.0%
AATTCTTCCGGTGGCAATTT+CGG - chr3_1:21489261-21489280 None:intergenic 40.0%
AGGAAGGAACTATAGTGACA+TGG - chr3_1:21489575-21489594 None:intergenic 40.0%
ATGTCACTATAGTTCCTTCC+TGG + chr3_1:21489574-21489593 Msa0352510:intron 40.0%
TGTCACTATAGTTCCTTCCT+GGG + chr3_1:21489575-21489594 Msa0352510:intron 40.0%
! TTTGTAGAGCGCTCTCAAAT+AGG + chr3_1:21489630-21489649 Msa0352510:intron 40.0%
AAGACTGAATGGATAGTAGG+TGG + chr3_1:21489733-21489752 Msa0352510:intron 40.0%
AAAGTCAGCGACTAATTTGG+TGG + chr3_1:21489913-21489932 Msa0352510:intron 40.0%
! GCACTGATGAAGTAAAGTAG+GGG + chr3_1:21490235-21490254 Msa0352510:intron 40.0%
TGATGAAGTAAAGTAGGGGT+AGG + chr3_1:21490239-21490258 Msa0352510:intron 40.0%
TACTAGCGAAAGACATATCG+AGG - chr3_1:21490401-21490420 None:intergenic 40.0%
CACATATAAAGGGACTGTGA+TGG + chr3_1:21490540-21490559 Msa0352510:intron 40.0%
ATAATCCTCTCATGGGTCAT+GGG + chr3_1:21490859-21490878 Msa0352510:intron 40.0%
!! GCTTGATAGTGATATGCCTA+AGG + chr3_1:21491507-21491526 Msa0352510:intron 40.0%
AATCAGGTCTGATAACAGCA+AGG - chr3_1:21491564-21491583 None:intergenic 40.0%
!! ACCTTTTTGAAAGTCTGGCT+TGG - chr3_1:21491766-21491785 None:intergenic 40.0%
AAAAACTAAGGCCTAAGCCT+TGG - chr3_1:21491828-21491847 None:intergenic 40.0%
!!! AGGCCTTAGTTTTTTCAACC+AGG + chr3_1:21491834-21491853 Msa0352510:intron 40.0%
AGGCCTGGTTGAAAAAACTA+AGG - chr3_1:21491840-21491859 None:intergenic 40.0%
AGGCTTTGCTTAAATAGGCT+AGG - chr3_1:21491860-21491879 None:intergenic 40.0%
TAGCCTATTTAAGCAAAGCC+TGG + chr3_1:21491859-21491878 Msa0352510:intron 40.0%
TATTTAAGCAAAGCCTGGCT+CGG + chr3_1:21491864-21491883 Msa0352510:intron 40.0%
GCATAAAATATGCAAGGTCC+GGG + chr3_1:21491940-21491959 Msa0352510:intron 40.0%
CATAAAATATGCAAGGTCCG+GGG + chr3_1:21491941-21491960 Msa0352510:intron 40.0%
!!! TCAAGTTTTTTGGTAGTGGC+CGG - chr3_1:21491975-21491994 None:intergenic 40.0%
!!! GGGATCAAGTTTTTTGGTAG+TGG - chr3_1:21491979-21491998 None:intergenic 40.0%
! TTTTTGCACATGACAGGTCA+TGG - chr3_1:21492220-21492239 None:intergenic 40.0%
! AGAAGGTTTTTGCACATGAC+AGG - chr3_1:21492226-21492245 None:intergenic 40.0%
ACTCAAATCTGAGAGCAAGA+AGG - chr3_1:21492243-21492262 None:intergenic 40.0%
! CAACAGAGTTCTAACCAAAG+AGG - chr3_1:21492338-21492357 None:intergenic 40.0%
AGCGTATTAAGGAGTTCATC+AGG - chr3_1:21492495-21492514 None:intergenic 40.0%
TGTTGTTCTTGGTAGATTCC+AGG + chr3_1:21492827-21492846 Msa0352510:intron 40.0%
CTGTTGGACTACACTTAGTT+GGG + chr3_1:21492888-21492907 Msa0352510:CDS 40.0%
TGTTGGACTACACTTAGTTG+GGG + chr3_1:21492889-21492908 Msa0352510:CDS 40.0%
CACAATAGCGTAGCAGAATT+CGG - chr3_1:21493129-21493148 None:intergenic 40.0%
! TTCGCAGTGTTGTTAAATCG+CGG - chr3_1:21493161-21493180 None:intergenic 40.0%
CCTAATGGCTGAAAAGATAG+AGG - chr3_1:21493207-21493226 None:intergenic 40.0%
! CCTCTATCTTTTCAGCCATT+AGG + chr3_1:21493204-21493223 Msa0352510:intron 40.0%
TCAGCCATTAGGATATAAGG+TGG + chr3_1:21493215-21493234 Msa0352510:intron 40.0%
AATTCTAGTACTACCCTGCA+TGG - chr3_1:21493370-21493389 None:intergenic 40.0%
CACCGAAAATAACCAAACTG+TGG - chr3_1:21493485-21493504 None:intergenic 40.0%
AAAGTAGTTCCGGTTAGGAT+CGG + chr3_1:21493680-21493699 Msa0352510:intron 40.0%
GAACGGGTATAACAAAGGTT+TGG - chr3_1:21493724-21493743 None:intergenic 40.0%
GAACTGAACGGGTATAACAA+AGG - chr3_1:21493729-21493748 None:intergenic 40.0%
TTCCGTAAAACCGAACTGAA+CGG - chr3_1:21493741-21493760 None:intergenic 40.0%
ACGGAACTGTTGTAATGGTT+CGG + chr3_1:21493755-21493774 Msa0352510:intron 40.0%
!! TCAAAAGGAGTACTTAGGTC+TGG - chr3_1:21493966-21493985 None:intergenic 40.0%
TAGACTGTTCGTTAATGGGA+AGG - chr3_1:21494019-21494038 None:intergenic 40.0%
CACGATAGACAGATAGGTAA+TGG - chr3_1:21494048-21494067 None:intergenic 40.0%
CATTACCTATCTGTCTATCG+TGG + chr3_1:21494046-21494065 Msa0352510:intron 40.0%
! TCAAGATTTAGAGTACGCGT+AGG - chr3_1:21494109-21494128 None:intergenic 40.0%
CTCCATTATTTGGTACAGGA+AGG + chr3_1:21494399-21494418 Msa0352510:intron 40.0%
CACCTTCCTGTACCAAATAA+TGG - chr3_1:21494404-21494423 None:intergenic 40.0%
GGTTGCTAGCATTTACAAAG+AGG + chr3_1:21494430-21494449 Msa0352510:CDS 40.0%
GAGGGGAACAAAAATTCACT+CGG + chr3_1:21494449-21494468 Msa0352510:CDS 40.0%
TATGGTTCCTTGTATGTTGC+AGG + chr3_1:21494980-21494999 Msa0352510:intron 40.0%
GAAAAGTCCTGCAACATACA+AGG - chr3_1:21494990-21495009 None:intergenic 40.0%
TTGCAATCTAACAACGCTTC+AGG - chr3_1:21495065-21495084 None:intergenic 40.0%
TGCAAAACTGAACCATATGG+TGG + chr3_1:21495080-21495099 Msa0352510:CDS 40.0%
AAAACTGAACCATATGGTGG+TGG + chr3_1:21495083-21495102 Msa0352510:CDS 40.0%
! TTGATAGTTCCACCACCATA+TGG - chr3_1:21495095-21495114 None:intergenic 40.0%
TGGAACTATCAAGATCCCAA+TGG + chr3_1:21495103-21495122 Msa0352510:CDS 40.0%
ATGACCTGAAACCTGATCAA+GGG + chr3_1:21495358-21495377 Msa0352510:three_prime_UTR 40.0%
!! CAAGGGCATAGTCCTATTTT+AGG + chr3_1:21495375-21495394 Msa0352510:three_prime_UTR 40.0%
ATTCAACTAGTTGAACTGGC+CGG - chr3_1:21495467-21495486 None:intergenic 40.0%
GCCAGTTCAACTAGTTGAAT+CGG + chr3_1:21495467-21495486 Msa0352510:three_prime_UTR 40.0%
CCAGTTCAACTAGTTGAATC+GGG + chr3_1:21495468-21495487 Msa0352510:three_prime_UTR 40.0%
GGAGACAAGGTCATTTATGA+GGG - chr3_1:21495654-21495673 None:intergenic 40.0%
AGGAGACAAGGTCATTTATG+AGG - chr3_1:21495655-21495674 None:intergenic 40.0%
TGAGTGTTCCACTTGGAACT+TGG - chr3_1:21488905-21488924 None:intergenic 45.0%
AGTCTCAAGGCAACAGGAAA+TGG - chr3_1:21488989-21489008 None:intergenic 45.0%
GATTTCAGTCTCAAGGCAAC+AGG - chr3_1:21488995-21489014 None:intergenic 45.0%
GTTGAGGGATTTCAGTCTCA+AGG - chr3_1:21489002-21489021 None:intergenic 45.0%
GAAGAGGAAATGGAGGGAAA+AGG - chr3_1:21489112-21489131 None:intergenic 45.0%
GTGAGAGAAGAGGAAATGGA+GGG - chr3_1:21489118-21489137 None:intergenic 45.0%
AGTGAGAGAAGAGGAAATGG+AGG - chr3_1:21489119-21489138 None:intergenic 45.0%
GGTAGTGAGAGAAGAGGAAA+TGG - chr3_1:21489122-21489141 None:intergenic 45.0%
GAGAGAGAGAGAGAGATTAC+TGG - chr3_1:21489143-21489162 None:intergenic 45.0%
TCTCTCTCTCTCTCTCTTTG+TGG + chr3_1:21489179-21489198 Msa0352510:intron 45.0%
GGTCTCCTGTTCAATTCTTC+CGG - chr3_1:21489273-21489292 None:intergenic 45.0%
! AAGGAAGGTAGTTTGCCACA+TGG + chr3_1:21489398-21489417 Msa0352510:CDS 45.0%
AGTTGTGCTTGTTTCACCTC+AGG + chr3_1:21489466-21489485 Msa0352510:CDS 45.0%
TGAAGTAAAGTAGGGGTAGG+TGG + chr3_1:21490242-21490261 Msa0352510:intron 45.0%
GAAGTAAAGTAGGGGTAGGT+GGG + chr3_1:21490243-21490262 Msa0352510:intron 45.0%
CATAATCCTCTCATGGGTCA+TGG + chr3_1:21490858-21490877 Msa0352510:intron 45.0%
AAAAGCCTATGAAGCCTACC+AGG + chr3_1:21491252-21491271 Msa0352510:intron 45.0%
GCCAAGCCAGACTTTCAAAA+AGG + chr3_1:21491762-21491781 Msa0352510:intron 45.0%
GCCAGACTTTCAAAAAGGTC+AGG + chr3_1:21491767-21491786 Msa0352510:intron 45.0%
!! GCCTGACCTTTTTGAAAGTC+TGG - chr3_1:21491771-21491790 None:intergenic 45.0%
ACTTTCAAAAAGGTCAGGCC+CGG + chr3_1:21491772-21491791 Msa0352510:intron 45.0%
!! CTTGGCCTTTTACCTGTCAA+AGG - chr3_1:21491810-21491829 None:intergenic 45.0%
CTTTGACAGGTAAAAGGCCA+AGG + chr3_1:21491808-21491827 Msa0352510:intron 45.0%
TTGCTTAAATAGGCTAGGCC+TGG - chr3_1:21491855-21491874 None:intergenic 45.0%
GAGCCAGGCTTTGCTTAAAT+AGG - chr3_1:21491865-21491884 None:intergenic 45.0%
!!! AAGTTTTTTGGTAGTGGCCG+GGG - chr3_1:21491973-21491992 None:intergenic 45.0%
!!! CAAGTTTTTTGGTAGTGGCC+GGG - chr3_1:21491974-21491993 None:intergenic 45.0%
! ATCGGAGTTGGTTAAGTAGC+AGG + chr3_1:21492278-21492297 Msa0352510:intron 45.0%
GCTGTTGGACTACACTTAGT+TGG + chr3_1:21492887-21492906 Msa0352510:CDS 45.0%
GATACCAAACTAAAGCGAGC+TGG + chr3_1:21493240-21493259 Msa0352510:CDS 45.0%
CAATCCAGCTCGCTTTAGTT+TGG - chr3_1:21493247-21493266 None:intergenic 45.0%
CAAACTAAAGCGAGCTGGAT+TGG + chr3_1:21493245-21493264 Msa0352510:CDS 45.0%
TCGTGAACTATCCCACAGTT+TGG + chr3_1:21493470-21493489 Msa0352510:intron 45.0%
GGACTAAAGTAGTTCCGGTT+AGG + chr3_1:21493675-21493694 Msa0352510:intron 45.0%
TCTGTGTTTCCGATCCTAAC+CGG - chr3_1:21493692-21493711 None:intergenic 45.0%
TAGGATCGGAAACACAGAAC+AGG + chr3_1:21493694-21493713 Msa0352510:intron 45.0%
! ACCCGTTCAGTTCGGTTTTA+CGG + chr3_1:21493736-21493755 Msa0352510:intron 45.0%
TCCGTAAAACCGAACTGAAC+GGG - chr3_1:21493740-21493759 None:intergenic 45.0%
GAGTTCTGCTAGACCCTTAT+TGG + chr3_1:21494081-21494100 Msa0352510:intron 45.0%
TGGTACAGGAAGGTGAAAAG+AGG + chr3_1:21494409-21494428 Msa0352510:intron 45.0%
CAATCTAACAACGCTTCAGG+TGG - chr3_1:21495062-21495081 None:intergenic 45.0%
CATGACCTGAAACCTGATCA+AGG + chr3_1:21495357-21495376 Msa0352510:three_prime_UTR 45.0%
TATGCCCTTGATCAGGTTTC+AGG - chr3_1:21495365-21495384 None:intergenic 45.0%
ATAGGACTATGCCCTTGATC+AGG - chr3_1:21495372-21495391 None:intergenic 45.0%
CCCGATTCAACTAGTTGAAC+TGG - chr3_1:21495471-21495490 None:intergenic 45.0%
CAACTAGTTGAATCGGGAAC+TGG + chr3_1:21495474-21495493 Msa0352510:three_prime_UTR 45.0%
ACACTTCAGTCTGGTTGAAC+TGG + chr3_1:21495526-21495545 Msa0352510:three_prime_UTR 45.0%
GGTTTGTACCACGATTGAAG+TGG + chr3_1:21495547-21495566 Msa0352510:three_prime_UTR 45.0%
!!! TTTTTTTTTTATTTTGTATT+TGG + chr3_1:21491388-21491407 Msa0352510:intron 5.0%
!!! TTTTTTTTTATTTTGTATTT+GGG + chr3_1:21491389-21491408 Msa0352510:intron 5.0%
!!! AATAATTATTTTCATAATAT+TGG - chr3_1:21492545-21492564 None:intergenic 5.0%
GCATGCTTCCAAGTTCCAAG+TGG + chr3_1:21488894-21488913 Msa0352510:CDS 50.0%
AGAGTGGTGAGTGTTCCACT+TGG - chr3_1:21488912-21488931 None:intergenic 50.0%
ACACTCACCACTCTCTGCAT+CGG + chr3_1:21488918-21488937 Msa0352510:CDS 50.0%
CACTCTCTGCATCGGATAGA+CGG + chr3_1:21488926-21488945 Msa0352510:CDS 50.0%
ATGGAGGGAAAAGGTGAGGT+GGG - chr3_1:21489103-21489122 None:intergenic 50.0%
AATGGAGGGAAAAGGTGAGG+TGG - chr3_1:21489104-21489123 None:intergenic 50.0%
GGAAATGGAGGGAAAAGGTG+AGG - chr3_1:21489107-21489126 None:intergenic 50.0%
TGCCACCGGAAGAATTGAAC+AGG + chr3_1:21489265-21489284 Msa0352510:intron 50.0%
CTCCTGTTCAATTCTTCCGG+TGG - chr3_1:21489270-21489289 None:intergenic 50.0%
! GGTAGTTTGCCACATGGTGT+TGG + chr3_1:21489404-21489423 Msa0352510:CDS 50.0%
! TTTGCCACATGGTGTTGGAG+AGG + chr3_1:21489409-21489428 Msa0352510:CDS 50.0%
! TTGCCACATGGTGTTGGAGA+GGG + chr3_1:21489410-21489429 Msa0352510:CDS 50.0%
TATTGAGAGGGCGGAGAAAG+AGG + chr3_1:21490980-21490999 Msa0352510:intron 50.0%
ATTGAGAGGGCGGAGAAAGA+GGG + chr3_1:21490981-21491000 Msa0352510:intron 50.0%
TCCTTGAGTCCTCGTGAGTA+GGG + chr3_1:21491085-21491104 Msa0352510:intron 50.0%
TATTCCCATCCCTACTCACG+AGG - chr3_1:21491097-21491116 None:intergenic 50.0%
TCGTGAGTAGGGATGGGAAT+AGG + chr3_1:21491096-21491115 Msa0352510:intron 50.0%
! CTTTTAGTAGGCCGAGCCAT+AGG - chr3_1:21491141-21491160 None:intergenic 50.0%
CAGGTAAAAGGCCAAGGCTT+AGG + chr3_1:21491814-21491833 Msa0352510:intron 50.0%
TGAGCTAAGCTCACGAGTAG+GGG - chr3_1:21491905-21491924 None:intergenic 50.0%
CTGAGCTAAGCTCACGAGTA+GGG - chr3_1:21491906-21491925 None:intergenic 50.0%
ACTGAGCTAAGCTCACGAGT+AGG - chr3_1:21491907-21491926 None:intergenic 50.0%
ACTCGTGAGCTTAGCTCAGT+TGG + chr3_1:21491907-21491926 Msa0352510:intron 50.0%
TGAGCTTAGCTCAGTTGGCT+TGG + chr3_1:21491912-21491931 Msa0352510:intron 50.0%
AGCAGGAACTGCATTTGAGC+TGG + chr3_1:21492295-21492314 Msa0352510:intron 50.0%
AGTGGGGTTAGAGCAAGTCT+TGG + chr3_1:21492657-21492676 Msa0352510:intron 50.0%
ACATGTGCAGCATCAGCTGT+TGG + chr3_1:21492872-21492891 Msa0352510:CDS 50.0%
GAAGGTGACTAACTCGATGG+AGG - chr3_1:21494001-21494020 None:intergenic 50.0%
TGGGAAGGTGACTAACTCGA+TGG - chr3_1:21494004-21494023 None:intergenic 50.0%
GTACGCGTAGGAGCCAATAA+GGG - chr3_1:21494097-21494116 None:intergenic 50.0%
AGTACGCGTAGGAGCCAATA+AGG - chr3_1:21494098-21494117 None:intergenic 50.0%
ACTAGTTGAACTGGCCGGTT+CGG - chr3_1:21495462-21495481 None:intergenic 50.0%
CGGTTTGACCACTTCAATCG+TGG - chr3_1:21495558-21495577 None:intergenic 50.0%
CGATTGAAGTGGTCAAACCG+CGG + chr3_1:21495558-21495577 Msa0352510:three_prime_UTR 50.0%
CGTCTATCCGATGCAGAGAG+TGG - chr3_1:21488928-21488947 None:intergenic 55.0%
GCAGCAGCATTGTGAAGCGA+TGG + chr3_1:21488958-21488977 Msa0352510:CDS 55.0%
! TGCTGCTGCTGCTAGGTTGA+GGG - chr3_1:21489017-21489036 None:intergenic 55.0%
TAGCCCACCGAAATTGCCAC+CGG + chr3_1:21489251-21489270 Msa0352510:intron 55.0%
CTTCCGGTGGCAATTTCGGT+GGG - chr3_1:21489257-21489276 None:intergenic 55.0%
TCTTCCGGTGGCAATTTCGG+TGG - chr3_1:21489258-21489277 None:intergenic 55.0%
! TGCCACATGGTGTTGGAGAG+GGG + chr3_1:21489411-21489430 Msa0352510:CDS 55.0%
ATCCCCTCTCCAACACCATG+TGG - chr3_1:21489416-21489435 None:intergenic 55.0%
GCTTACTCACTCACCCAGGA+AGG - chr3_1:21489591-21489610 None:intergenic 55.0%
ACACACCCATGACCCATGAG+AGG - chr3_1:21490867-21490886 None:intergenic 55.0%
CTCCTTGAGTCCTCGTGAGT+AGG + chr3_1:21491084-21491103 Msa0352510:intron 55.0%
TCCCTACTCACGAGGACTCA+AGG - chr3_1:21491089-21491108 None:intergenic 55.0%
TGAGTCCTCGTGAGTAGGGA+TGG + chr3_1:21491089-21491108 Msa0352510:intron 55.0%
GAGTCCTCGTGAGTAGGGAT+GGG + chr3_1:21491090-21491109 Msa0352510:intron 55.0%
AGTAGGGATGGGAATAGGCC+AGG + chr3_1:21491101-21491120 Msa0352510:intron 55.0%
TTAAACGAGCTAGGCCGAGC+CGG - chr3_1:21491165-21491184 None:intergenic 55.0%
TACTCATATACGGGTCGGCC+TGG - chr3_1:21491273-21491292 None:intergenic 55.0%
CTAAGCTCACGAGTAGGGGT+GGG - chr3_1:21491901-21491920 None:intergenic 55.0%
! AGCGAGCTGGATTGGACTAC+TGG + chr3_1:21493253-21493272 Msa0352510:CDS 55.0%
TGGACTACTGGCCGTATCCT+TGG + chr3_1:21493265-21493284 Msa0352510:intron 55.0%
GAACTGGCGAGTTCGTTGGT+CGG + chr3_1:21495490-21495509 Msa0352510:three_prime_UTR 55.0%
CTGCTGCTGCTGCTAGGTTG+AGG - chr3_1:21489018-21489037 None:intergenic 60.0%
GGTGGCTTACTCACTCACCC+AGG - chr3_1:21489595-21489614 None:intergenic 60.0%
GGCTCGGCCTACTAAAAGCC+CGG + chr3_1:21491143-21491162 Msa0352510:intron 60.0%
GGCCTACTAAAAGCCCGGCT+CGG + chr3_1:21491148-21491167 Msa0352510:intron 60.0%
TAAACGAGCTAGGCCGAGCC+GGG - chr3_1:21491164-21491183 None:intergenic 60.0%
GTCGGCCTGGTAGGCTTCAT+AGG - chr3_1:21491260-21491279 None:intergenic 60.0%
CATATACGGGTCGGCCTGGT+AGG - chr3_1:21491269-21491288 None:intergenic 60.0%
AGTAGGGGTGGGAATGAGCC+GGG - chr3_1:21491890-21491909 None:intergenic 60.0%
GAGTAGGGGTGGGAATGAGC+CGG - chr3_1:21491891-21491910 None:intergenic 60.0%
GCTAAGCTCACGAGTAGGGG+TGG - chr3_1:21491902-21491921 None:intergenic 60.0%
AAGGTCCGGGGTTCAAACCC+CGG + chr3_1:21491953-21491972 Msa0352510:intron 60.0%
TCGGGAACTGGCGAGTTCGT+TGG + chr3_1:21495486-21495505 Msa0352510:three_prime_UTR 60.0%
CTGCTGCTGCTGCTGCTGCT+AGG - chr3_1:21489024-21489043 None:intergenic 65.0%
! GGCCGAGCCGGGCTTTTAGT+AGG - chr3_1:21491153-21491172 None:intergenic 65.0%
!! AAGCAAAGCCTGGCTCGGCC+CGG + chr3_1:21491869-21491888 Msa0352510:intron 65.0%
AGTGGCCGGGGTTTGAACCC+CGG - chr3_1:21491961-21491980 None:intergenic 65.0%
AATAGGCCAGGCCGCCCGTC+AGG + chr3_1:21491113-21491132 Msa0352510:intron 70.0%
ATAGGCCAGGCCGCCCGTCA+GGG + chr3_1:21491114-21491133 Msa0352510:intron 70.0%
AGCCATAGGCCCCTGACGGG+CGG - chr3_1:21491127-21491146 None:intergenic 70.0%
CCGAGCCATAGGCCCCTGAC+GGG - chr3_1:21491130-21491149 None:intergenic 70.0%
CCCGTCAGGGGCCTATGGCT+CGG + chr3_1:21491127-21491146 Msa0352510:intron 70.0%
GCCGAGCCATAGGCCCCTGA+CGG - chr3_1:21491131-21491150 None:intergenic 70.0%
TAGGCCAGGCCGCCCGTCAG+GGG + chr3_1:21491115-21491134 Msa0352510:intron 75.0%
GGAATGAGCCGGGCCGAGCC+AGG - chr3_1:21491880-21491899 None:intergenic 75.0%
!! TAGGCCCCTGACGGGCGGCC+TGG - chr3_1:21491122-21491141 None:intergenic 80.0%
! GGCCGCCCGTCAGGGGCCTA+TGG + chr3_1:21491122-21491141 Msa0352510:intron 80.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 21488851 21495685 21488851 ID=Msa0352510;Name=Msa0352510
chr3_1 mRNA 21488851 21495685 21488851 ID=Msa0352510-mRNA-1;Parent=Msa0352510;Name=Msa0352510-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0|1|0.85|1|1|1|7|402|315
chr3_1 exon 21488851 21489142 21488851 ID=Msa0352510-mRNA-1:exon:4888;Parent=Msa0352510-mRNA-1
chr3_1 exon 21489357 21489487 21489357 ID=Msa0352510-mRNA-1:exon:4889;Parent=Msa0352510-mRNA-1
chr3_1 exon 21492842 21492910 21492842 ID=Msa0352510-mRNA-1:exon:4890;Parent=Msa0352510-mRNA-1
chr3_1 exon 21493219 21493277 21493219 ID=Msa0352510-mRNA-1:exon:4891;Parent=Msa0352510-mRNA-1
chr3_1 exon 21494272 21494332 21494272 ID=Msa0352510-mRNA-1:exon:4892;Parent=Msa0352510-mRNA-1
chr3_1 exon 21494417 21494470 21494417 ID=Msa0352510-mRNA-1:exon:4893;Parent=Msa0352510-mRNA-1
chr3_1 exon 21495002 21495685 21495002 ID=Msa0352510-mRNA-1:exon:4894;Parent=Msa0352510-mRNA-1
chr3_1 CDS 21488851 21489142 21488851 ID=Msa0352510-mRNA-1:cds;Parent=Msa0352510-mRNA-1
chr3_1 CDS 21489357 21489487 21489357 ID=Msa0352510-mRNA-1:cds;Parent=Msa0352510-mRNA-1
chr3_1 CDS 21492842 21492910 21492842 ID=Msa0352510-mRNA-1:cds;Parent=Msa0352510-mRNA-1
chr3_1 CDS 21493219 21493277 21493219 ID=Msa0352510-mRNA-1:cds;Parent=Msa0352510-mRNA-1
chr3_1 CDS 21494272 21494332 21494272 ID=Msa0352510-mRNA-1:cds;Parent=Msa0352510-mRNA-1
chr3_1 CDS 21494417 21494470 21494417 ID=Msa0352510-mRNA-1:cds;Parent=Msa0352510-mRNA-1
chr3_1 CDS 21495002 21495283 21495002 ID=Msa0352510-mRNA-1:cds;Parent=Msa0352510-mRNA-1
chr3_1 three_prime_UTR 21495284 21495685 21495284 ID=Msa0352510-mRNA-1:three_prime_utr;Parent=Msa0352510-mRNA-1
Gene Sequence

>Msa0352510

ATGTGGTTATTATGGATGCTTTTAGTCACTCAAGCAAGTGAGAGCATGCTTCCAAGTTCCAAGTGGAACACTCACCACTCTCTGCATCGGATAGACGGAAAGAAGCAGCAGCAGCATTGTGAAGCGATGGACATACCATTTCCTGTTGCCTTGAGACTGAAATCCCTCAACCTAGCAGCAGCAGCAGCAGCAGCAAACCCTTTTCATTTTCGATCCAAACTCTCTCTTTTTCGTCAACTTCACTTCAAACCCACCTCACCTTTTCCCTCCATTTCCTCTTCTCTCACTACCAATGGTTCTGTTGCTGCTGCTGCTGCTGAGAATGAGATAAAGAAGGAAGGTAGTTTGCCACATGGTGTTGGAGAGGGGATTAATGAAGCATCACATTCTAAGATTCTTCAAGTTGTGCTTGTTTCACCTCAGATTCCAGGAAACACTGGCTGCATTGCTAGAACATGTGCAGCATCAGCTGTTGGACTACACTTAGTTGGGCCATTAGGATATAAGGTGGATGATACCAAACTAAAGCGAGCTGGATTGGACTACTGGCCATACGTCGTTGTTAAAATTCACGATTCTTGGGAAGGTTTTCGTGATTATTTTTTGCAACAGGAAGGTGAAAAGAGGTTGCTAGCATTTACAAAGAGGGGAACAAAAATTCACTCGGACTTTTCATACAGAAAAGGCGATTATCTTTTATTTGGTGCTGAAACTACTGGTCTTCCACCTGAAGCGTTGTTAGATTGCAAAACTGAACCATATGGTGGTGGAACTATCAAGATCCCAATGGTTGAAACATATGTCAGGTGTTTGAATCTATCAGTAAGTGTTGGCATAGCTTTGTATGAAGCTTCTAGACAACTAAACTATGAATCACTTCAGATACCTTCAGAAACATGTATTGATACTGAGGAGGAATCATTAATTACTGAAGACATTTTTGGCTGA

Protein sequence

>Msa0352510

MWLLWMLLVTQASESMLPSSKWNTHHSLHRIDGKKQQQHCEAMDIPFPVALRLKSLNLAAAAAAANPFHFRSKLSLFRQLHFKPTSPFPSISSSLTTNGSVAAAAAENEIKKEGSLPHGVGEGINEASHSKILQVVLVSPQIPGNTGCIARTCAASAVGLHLVGPLGYKVDDTKLKRAGLDYWPYVVVKIHDSWEGFRDYFLQQEGEKRLLAFTKRGTKIHSDFSYRKGDYLLFGAETTGLPPEALLDCKTEPYGGGTIKIPMVETYVRCLNLSVSVGIALYEASRQLNYESLQIPSETCIDTEEESLITEDIFG*