Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0506980 | XP_003600650.2 | 98.113 | 212 | 4 | 0 | 1 | 212 | 1 | 212 | 3.93e-150 | 425 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0506980 | sp|Q96324|GSTFB_ARATH | 58.019 | 212 | 89 | 0 | 1 | 212 | 1 | 212 | 5.03e-91 | 268 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0506980 | A0A2Z2Z7E2 | 98.113 | 212 | 4 | 0 | 1 | 212 | 1 | 212 | 1.88e-150 | 425 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0010560 | Msa0506980 | 0.892173 | 2.025968e-74 | -8.615850e-47 |
| Msa0050990 | Msa0506980 | 0.899339 | 2.186182e-77 | -8.615850e-47 |
| Msa0101300 | Msa0506980 | 0.883248 | 5.266782e-71 | -8.615850e-47 |
| Msa0145600 | Msa0506980 | 0.866266 | 3.233165e-65 | -8.615850e-47 |
| Msa0193890 | Msa0506980 | 0.817303 | 3.536784e-52 | -8.615850e-47 |
| Msa0367850 | Msa0506980 | 0.831589 | 1.531877e-55 | -8.615850e-47 |
| Msa0368080 | Msa0506980 | 0.899947 | 1.195804e-77 | -8.615850e-47 |
| Msa0412440 | Msa0506980 | 0.801268 | 9.754130e-49 | -8.615850e-47 |
| Msa0415620 | Msa0506980 | 0.824916 | 6.226534e-54 | -8.615850e-47 |
| Msa0437150 | Msa0506980 | 0.818276 | 2.133376e-52 | -8.615850e-47 |
| Msa0456910 | Msa0506980 | 0.801967 | 7.013293e-49 | -8.615850e-47 |
| Msa0460620 | Msa0506980 | 0.841027 | 6.095009e-58 | -8.615850e-47 |
| Msa0460980 | Msa0506980 | 0.898943 | 3.231697e-77 | -8.615850e-47 |
| Msa0298240 | Msa0506980 | 0.816534 | 5.264082e-52 | -8.615850e-47 |
| Msa0337850 | Msa0506980 | 0.800111 | 1.679981e-48 | -8.615850e-47 |
| Msa0506980 | Msa0517340 | 0.803590 | 3.241388e-49 | -8.615850e-47 |
| Msa0506980 | Msa0688500 | 0.814563 | 1.445484e-51 | -8.615850e-47 |
| Msa0506980 | Msa0737190 | 0.832167 | 1.103184e-55 | -8.615850e-47 |
| Msa0506980 | Msa0740640 | 0.806445 | 8.198259e-50 | -8.615850e-47 |
| Msa0506980 | Msa0754030 | 0.860001 | 2.799402e-63 | -8.615850e-47 |
| Msa0506980 | Msa0778930 | 0.813021 | 3.160604e-51 | -8.615850e-47 |
| Msa0506980 | Msa0807110 | 0.868989 | 4.331143e-66 | -8.615850e-47 |
| Msa0506980 | Msa0833040 | 0.870107 | 1.872462e-66 | -8.615850e-47 |
| Msa0506980 | Msa0856520 | 0.815864 | 7.429730e-52 | -8.615850e-47 |
| Msa0506980 | Msa0867350 | 0.802778 | 4.773650e-49 | -8.615850e-47 |
| Msa0506980 | Msa1010840 | 0.800874 | 1.174486e-48 | -8.615850e-47 |
| Msa0506980 | Msa1018710 | 0.809330 | 1.995596e-50 | -8.615850e-47 |
| Msa0506980 | Msa1052360 | 0.807060 | 6.076773e-50 | -8.615850e-47 |
| Msa0506980 | Msa1070420 | 0.802670 | 5.024181e-49 | -8.615850e-47 |
| Msa0506980 | Msa1096210 | 0.811091 | 8.326876e-51 | -8.615850e-47 |
| Msa0506980 | Msa1408870 | 0.869087 | 4.024800e-66 | -8.615850e-47 |
| Msa0506980 | Msa1448770 | 0.818205 | 2.213837e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0506980 | MtrunA17_Chr3g0109891 | 98.113 | 212 | 4 | 0 | 1 | 212 | 1 | 212 | 3.62e-154 | 425 |
| Msa0506980 | MtrunA17_Chr3g0095781 | 58.294 | 211 | 87 | 1 | 1 | 211 | 1 | 210 | 1.13e-87 | 257 |
| Msa0506980 | MtrunA17_Chr5g0442751 | 55.399 | 213 | 89 | 4 | 1 | 210 | 1 | 210 | 1.11e-79 | 237 |
| Msa0506980 | MtrunA17_Chr5g0442741 | 52.113 | 213 | 98 | 3 | 1 | 211 | 1 | 211 | 3.71e-75 | 226 |
| Msa0506980 | MtrunA17_Chr3g0095821 | 55.488 | 164 | 73 | 0 | 48 | 211 | 1 | 164 | 8.69e-68 | 205 |
| Msa0506980 | MtrunA17_Chr1g0157211 | 45.794 | 214 | 111 | 2 | 3 | 211 | 5 | 218 | 1.80e-62 | 194 |
| Msa0506980 | MtrunA17_Chr1g0195811 | 43.961 | 207 | 115 | 1 | 2 | 208 | 3 | 208 | 7.85e-60 | 186 |
| Msa0506980 | MtrunA17_Chr1g0195821 | 44.928 | 207 | 113 | 1 | 2 | 208 | 3 | 208 | 1.23e-58 | 183 |
| Msa0506980 | MtrunA17_Chr1g0195831 | 43.062 | 209 | 117 | 2 | 1 | 208 | 1 | 208 | 1.14e-57 | 181 |
| Msa0506980 | MtrunA17_Chr8g0386711 | 28.070 | 171 | 120 | 1 | 1 | 168 | 1 | 171 | 3.09e-14 | 69.3 |
| Msa0506980 | MtrunA17_Chr4g0076691 | 28.856 | 201 | 124 | 5 | 5 | 202 | 18 | 202 | 4.14e-13 | 65.9 |
| Msa0506980 | MtrunA17_Chr3g0095811 | 61.224 | 49 | 18 | 1 | 1 | 49 | 1 | 48 | 4.40e-13 | 62.4 |
| Msa0506980 | MtrunA17_Chr2g0276951 | 29.651 | 172 | 108 | 6 | 40 | 208 | 42 | 203 | 4.44e-13 | 67.4 |
| Msa0506980 | MtrunA17_Chr4g0076681 | 35.849 | 106 | 67 | 1 | 5 | 110 | 18 | 122 | 5.33e-13 | 65.9 |
| Msa0506980 | MtrunA17_Chr1g0198101 | 46.032 | 63 | 33 | 1 | 146 | 208 | 1 | 62 | 1.81e-12 | 60.5 |
| Msa0506980 | MtrunA17_Chr0c12g0493651 | 33.333 | 132 | 74 | 4 | 40 | 167 | 40 | 161 | 5.24e-12 | 64.3 |
| Msa0506980 | MtrunA17_Chr4g0076641 | 32.787 | 122 | 77 | 3 | 4 | 125 | 15 | 131 | 9.91e-12 | 60.5 |
| Msa0506980 | MtrunA17_Chr8g0386701 | 26.627 | 169 | 121 | 1 | 3 | 168 | 5 | 173 | 2.58e-11 | 61.2 |
| Msa0506980 | MtrunA17_Chr3g0125261 | 21.397 | 229 | 141 | 5 | 15 | 208 | 13 | 237 | 3.81e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0506980 | AT3G03190.1 | 58.019 | 212 | 89 | 0 | 1 | 212 | 1 | 212 | 5.11e-92 | 268 |
| Msa0506980 | AT5G17220.1 | 53.774 | 212 | 98 | 0 | 1 | 212 | 1 | 212 | 3.23e-86 | 254 |
| Msa0506980 | AT2G30870.1 | 52.885 | 208 | 97 | 1 | 1 | 208 | 1 | 207 | 7.89e-78 | 233 |
| Msa0506980 | AT2G30860.1 | 51.691 | 207 | 99 | 1 | 1 | 207 | 1 | 206 | 1.74e-74 | 224 |
| Msa0506980 | AT3G62760.1 | 44.286 | 210 | 115 | 2 | 1 | 209 | 1 | 209 | 9.88e-59 | 184 |
| Msa0506980 | AT1G02930.2 | 43.689 | 206 | 114 | 2 | 3 | 208 | 4 | 207 | 6.17e-57 | 179 |
| Msa0506980 | AT1G02930.1 | 43.689 | 206 | 114 | 2 | 3 | 208 | 4 | 207 | 6.17e-57 | 179 |
| Msa0506980 | AT1G02920.1 | 44.175 | 206 | 114 | 1 | 3 | 208 | 4 | 208 | 1.47e-56 | 178 |
| Msa0506980 | AT2G47730.2 | 43.750 | 208 | 115 | 2 | 5 | 211 | 54 | 260 | 1.90e-54 | 175 |
| Msa0506980 | AT2G47730.1 | 43.750 | 208 | 115 | 2 | 5 | 211 | 54 | 260 | 1.90e-54 | 175 |
| Msa0506980 | AT4G02520.1 | 41.905 | 210 | 118 | 2 | 3 | 209 | 4 | 212 | 6.30e-54 | 172 |
| Msa0506980 | AT2G02930.1 | 42.105 | 209 | 117 | 2 | 3 | 208 | 4 | 211 | 1.26e-52 | 168 |
| Msa0506980 | AT1G49860.1 | 45.026 | 191 | 102 | 2 | 20 | 207 | 22 | 212 | 1.64e-51 | 167 |
| Msa0506980 | AT1G02950.3 | 43.137 | 204 | 114 | 2 | 4 | 206 | 26 | 228 | 5.34e-51 | 165 |
| Msa0506980 | AT1G02950.1 | 43.137 | 204 | 114 | 2 | 4 | 206 | 26 | 228 | 5.34e-51 | 165 |
| Msa0506980 | AT1G02950.2 | 43.137 | 204 | 114 | 2 | 4 | 206 | 28 | 230 | 5.71e-51 | 165 |
| Msa0506980 | AT1G02950.5 | 43.137 | 204 | 114 | 2 | 4 | 206 | 38 | 240 | 6.05e-51 | 166 |
| Msa0506980 | AT2G30860.2 | 50.968 | 155 | 75 | 1 | 1 | 155 | 1 | 154 | 9.86e-51 | 162 |
| Msa0506980 | AT1G02940.4 | 39.512 | 205 | 122 | 2 | 4 | 207 | 40 | 243 | 3.05e-49 | 161 |
| Msa0506980 | AT1G02940.1 | 39.512 | 205 | 122 | 2 | 4 | 207 | 40 | 243 | 3.05e-49 | 161 |
| Msa0506980 | AT1G02940.2 | 39.512 | 205 | 122 | 2 | 4 | 207 | 65 | 268 | 3.68e-49 | 162 |
| Msa0506980 | AT1G02940.3 | 39.512 | 205 | 122 | 2 | 4 | 207 | 53 | 256 | 3.76e-49 | 161 |
| Msa0506980 | AT1G02950.4 | 40.972 | 144 | 83 | 2 | 64 | 206 | 60 | 202 | 8.89e-30 | 110 |
| Msa0506980 | AT5G41240.1 | 30.000 | 210 | 138 | 4 | 1 | 204 | 1 | 207 | 4.21e-16 | 76.6 |
| Msa0506980 | AT5G41220.1 | 28.571 | 203 | 138 | 3 | 1 | 197 | 1 | 202 | 1.59e-14 | 72.0 |
| Msa0506980 | AT1G77290.3 | 24.051 | 237 | 148 | 6 | 3 | 208 | 1 | 236 | 2.05e-14 | 70.5 |
| Msa0506980 | AT1G77290.1 | 24.051 | 237 | 148 | 6 | 3 | 208 | 1 | 236 | 2.05e-14 | 70.5 |
| Msa0506980 | AT1G77290.2 | 24.051 | 237 | 148 | 6 | 3 | 208 | 1 | 236 | 2.05e-14 | 70.5 |
| Msa0506980 | AT1G09640.2 | 28.796 | 191 | 123 | 4 | 27 | 211 | 22 | 205 | 7.24e-14 | 68.9 |
| Msa0506980 | AT5G41210.1 | 28.079 | 203 | 139 | 3 | 1 | 197 | 2 | 203 | 9.52e-14 | 68.2 |
| Msa0506980 | AT1G57720.1 | 27.907 | 172 | 112 | 4 | 40 | 208 | 40 | 202 | 6.61e-13 | 67.0 |
| Msa0506980 | AT1G57720.2 | 27.907 | 172 | 112 | 4 | 40 | 208 | 40 | 202 | 6.61e-13 | 67.0 |
| Msa0506980 | AT1G09640.1 | 28.191 | 188 | 122 | 4 | 27 | 208 | 22 | 202 | 1.76e-12 | 65.9 |
| Msa0506980 | AT2G02390.2 | 31.776 | 107 | 71 | 1 | 3 | 109 | 9 | 113 | 6.86e-11 | 59.7 |
Find 51 sgRNAs with CRISPR-Local
Find 246 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTATTGAGGCAGCAAAAT+TGG | 0.165753 | 3_4:+53877485 | Msa0506980:CDS |
| AATATGGTGGTGAAAGTTTA+TGG | 0.187933 | 3_4:+53875312 | Msa0506980:exon |
| GATGGTGATTTCAGACTCTT+TGG | 0.307785 | 3_4:+53876390 | Msa0506980:CDS |
| GTGCATATTGATCTTGATAA+AGG | 0.322979 | 3_4:+53875405 | Msa0506980:CDS |
| GCTGATCTTAGCCATCTTCC+TGG | 0.323812 | 3_4:+53877453 | Msa0506980:CDS |
| TCTAAAAGCACTTATCTTGC+TGG | 0.332817 | 3_4:+53877414 | Msa0506980:CDS |
| ACAAAAGAGCAAGGGAAATA+TGG | 0.351303 | 3_4:+53875296 | Msa0506980:exon |
| AACATTATATTGAAGCATAA+AGG | 0.362361 | 3_4:-53877285 | None:intergenic |
| TTGGAAGAAGTTGAAGGAAT+TGG | 0.377135 | 3_4:+53877572 | Msa0506980:CDS |
| TTGTGATTTGTGTAGAATCC+AGG | 0.385120 | 3_4:+53877142 | Msa0506980:intron |
| AAATCACCATCCTCTACAAC+TGG | 0.411376 | 3_4:-53876378 | None:intergenic |
| TCAATAAGATGTTCAATTCC+AGG | 0.412097 | 3_4:-53877471 | None:intergenic |
| CTTATTGAGGCAGCAAAATT+GGG | 0.415280 | 3_4:+53877486 | Msa0506980:CDS |
| GAGGGTGATGGCTTGCCTCT+TGG | 0.421689 | 3_4:+53875359 | Msa0506980:CDS |
| TCCTTCAACTTCTTCCAAGC+TGG | 0.444171 | 3_4:-53877567 | None:intergenic |
| AAAGTTGTGCCAAGTAAGTC+AGG | 0.462656 | 3_4:-53877207 | None:intergenic |
| ACCTGAGTTCCTTCTCCTCC+AGG | 0.473534 | 3_4:+53875440 | Msa0506980:CDS |
| AAATTTCTAGTAGGCCAGCT+TGG | 0.510403 | 3_4:+53877553 | Msa0506980:CDS |
| TGCTGGTGATAAGTTCACTT+TGG | 0.510705 | 3_4:+53877431 | Msa0506980:CDS |
| GGTGGGAGAAAATTTCTAGT+AGG | 0.512715 | 3_4:+53877544 | Msa0506980:CDS |
| TAGAATCCAGGGCTATTGTA+AGG | 0.513820 | 3_4:+53877154 | Msa0506980:intron |
| AAGTTGAAGGAATTGGCATA+AGG | 0.515297 | 3_4:+53877579 | Msa0506980:CDS |
| GATGTTCAATTCCAGGAAGA+TGG | 0.515702 | 3_4:-53877464 | None:intergenic |
| TGGAATTGAACATCTTATTG+AGG | 0.518417 | 3_4:+53877473 | Msa0506980:CDS |
| GACCGTGGTCCTGACTTACT+TGG | 0.519069 | 3_4:+53877198 | Msa0506980:CDS |
| AGAAAGCTGTGGTAAATCAA+TGG | 0.531665 | 3_4:+53877235 | Msa0506980:CDS |
| ACAACTGGAACTTGACCAAA+GGG | 0.534533 | 3_4:-53876363 | None:intergenic |
| TGTGATTTGTGTAGAATCCA+GGG | 0.535247 | 3_4:+53877143 | Msa0506980:intron |
| TGGTCAAGTTCCAGTTGTAG+AGG | 0.543144 | 3_4:+53876368 | Msa0506980:CDS |
| TATATACTACCTGGAGGAGA+AGG | 0.549721 | 3_4:-53875449 | None:intergenic |
| TTTCAGGTAACAAAAGAGCA+AGG | 0.553472 | 3_4:+53875287 | Msa0506980:five_prime_UTR |
| TGAGCTATAGTTATGTCTCC+AGG | 0.558174 | 3_4:-53877339 | None:intergenic |
| CAAGTTCCAGTTGTAGAGGA+TGG | 0.575857 | 3_4:+53876372 | Msa0506980:CDS |
| GCCAGCTTGGAAGAAGTTGA+AGG | 0.576600 | 3_4:+53877566 | Msa0506980:CDS |
| AGAGGAAGAATGTGAATGCT+TGG | 0.577760 | 3_4:+53877523 | Msa0506980:CDS |
| TTCAGGTAACAAAAGAGCAA+GGG | 0.583755 | 3_4:+53875288 | Msa0506980:five_prime_UTR |
| GAAGAATGTGAATGCTTGGT+GGG | 0.598085 | 3_4:+53877527 | Msa0506980:CDS |
| GGAAGAATGTGAATGCTTGG+TGG | 0.600496 | 3_4:+53877526 | Msa0506980:CDS |
| TACAACTGGAACTTGACCAA+AGG | 0.607365 | 3_4:-53876364 | None:intergenic |
| TGGGACATTTGATTAGTGAG+AGG | 0.608261 | 3_4:+53877505 | Msa0506980:CDS |
| ACAGTACCTTACAATAGCCC+TGG | 0.622093 | 3_4:-53877160 | None:intergenic |
| TAATGCAGCATGTCCTCAGA+GGG | 0.631190 | 3_4:+53875341 | Msa0506980:CDS |
| ACCTGGAGGAGAAGGAACTC+AGG | 0.631815 | 3_4:-53875441 | None:intergenic |
| AGCATGTCCTCAGAGGGTGA+TGG | 0.631871 | 3_4:+53875347 | Msa0506980:CDS |
| AGGCAAGCCATCACCCTCTG+AGG | 0.647043 | 3_4:-53875354 | None:intergenic |
| AAAGAGCAAGGGAAATATGG+TGG | 0.665709 | 3_4:+53875299 | Msa0506980:exon |
| TTAATGCAGCATGTCCTCAG+AGG | 0.685889 | 3_4:+53875340 | Msa0506980:CDS |
| AACTTTAGAAGAGAAAGCTG+TGG | 0.694994 | 3_4:+53877224 | Msa0506980:CDS |
| GCAGCAAAGTATGCAGACCG+TGG | 0.737322 | 3_4:+53877183 | Msa0506980:CDS |
| TGCCAAGTAAGTCAGGACCA+CGG | 0.737821 | 3_4:-53877200 | None:intergenic |
| TGCTTGATGTGTATGAACGT+AGG | 0.749850 | 3_4:+53877388 | Msa0506980:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATCATATATATAATTGTATA+TGG | - | chr3_4:53876141-53876160 | None:intergenic | 10.0% |
| !!! | AGCAAATTTATTATTTTTTA+GGG | - | chr3_4:53876503-53876522 | None:intergenic | 10.0% |
| !!! | TAGCAAATTTATTATTTTTT+AGG | - | chr3_4:53876504-53876523 | None:intergenic | 10.0% |
| !! | ATCATATATATAATTGTATA+TGG | - | chr3_4:53876141-53876160 | None:intergenic | 10.0% |
| !!! | AGCAAATTTATTATTTTTTA+GGG | - | chr3_4:53876503-53876522 | None:intergenic | 10.0% |
| !!! | TAGCAAATTTATTATTTTTT+AGG | - | chr3_4:53876504-53876523 | None:intergenic | 10.0% |
| !! | AAAAATATTATCGAAGAAAA+AGG | - | chr3_4:53875518-53875537 | None:intergenic | 15.0% |
| !!! | CTTTTTTTTCTTCTTAAAAA+AGG | + | chr3_4:53875815-53875834 | Msa0506980:intron | 15.0% |
| !!! | TCTTTTTTTATAAAAGTATG+CGG | + | chr3_4:53875842-53875861 | Msa0506980:intron | 15.0% |
| !! | AGTGTTAATTAATTAAAAGT+GGG | + | chr3_4:53875901-53875920 | Msa0506980:intron | 15.0% |
| !!! | AGATTTATTATATTGATTGA+TGG | + | chr3_4:53875944-53875963 | Msa0506980:intron | 15.0% |
| !! | TTGAAGGTAAAAAATAATTA+AGG | - | chr3_4:53876553-53876572 | None:intergenic | 15.0% |
| !!! | AAATTTAAATAGTATCGATT+AGG | - | chr3_4:53876667-53876686 | None:intergenic | 15.0% |
| !! | AAAAATATTATCGAAGAAAA+AGG | - | chr3_4:53875518-53875537 | None:intergenic | 15.0% |
| !!! | CTTTTTTTTCTTCTTAAAAA+AGG | + | chr3_4:53875815-53875834 | Msa0506980:intron | 15.0% |
| !!! | TCTTTTTTTATAAAAGTATG+CGG | + | chr3_4:53875842-53875861 | Msa0506980:intron | 15.0% |
| !! | AGTGTTAATTAATTAAAAGT+GGG | + | chr3_4:53875901-53875920 | Msa0506980:intron | 15.0% |
| !!! | AGATTTATTATATTGATTGA+TGG | + | chr3_4:53875944-53875963 | Msa0506980:intron | 15.0% |
| !! | TTGAAGGTAAAAAATAATTA+AGG | - | chr3_4:53876553-53876572 | None:intergenic | 15.0% |
| !!! | AAATTTAAATAGTATCGATT+AGG | - | chr3_4:53876667-53876686 | None:intergenic | 15.0% |
| !! | AAAATATAGTTGAGATATCT+TGG | + | chr3_4:53875767-53875786 | Msa0506980:intron | 20.0% |
| !! | GAGTGTTAATTAATTAAAAG+TGG | + | chr3_4:53875900-53875919 | Msa0506980:intron | 20.0% |
| !!! | TTTAATTTTCATGGTTTCAT+TGG | + | chr3_4:53876913-53876932 | Msa0506980:intron | 20.0% |
| !! | ACATTGCTCATATTTAAATA+AGG | + | chr3_4:53877029-53877048 | Msa0506980:intron | 20.0% |
| !!! | AGTAACATGTTATTTTTTCT+AGG | + | chr3_4:53877083-53877102 | Msa0506980:intron | 20.0% |
| !!! | GTAACATGTTATTTTTTCTA+GGG | + | chr3_4:53877084-53877103 | Msa0506980:intron | 20.0% |
| !! | ATAAAGTAACATGTTATGTT+AGG | + | chr3_4:53877111-53877130 | Msa0506980:intron | 20.0% |
| !! | AACATTATATTGAAGCATAA+AGG | - | chr3_4:53877288-53877307 | None:intergenic | 20.0% |
| !! | AAAATATAGTTGAGATATCT+TGG | + | chr3_4:53875767-53875786 | Msa0506980:intron | 20.0% |
| !! | GAGTGTTAATTAATTAAAAG+TGG | + | chr3_4:53875900-53875919 | Msa0506980:intron | 20.0% |
| !!! | TTTAATTTTCATGGTTTCAT+TGG | + | chr3_4:53876913-53876932 | Msa0506980:intron | 20.0% |
| !! | ACATTGCTCATATTTAAATA+AGG | + | chr3_4:53877029-53877048 | Msa0506980:intron | 20.0% |
| !!! | AGTAACATGTTATTTTTTCT+AGG | + | chr3_4:53877083-53877102 | Msa0506980:intron | 20.0% |
| !!! | GTAACATGTTATTTTTTCTA+GGG | + | chr3_4:53877084-53877103 | Msa0506980:intron | 20.0% |
| !! | ATAAAGTAACATGTTATGTT+AGG | + | chr3_4:53877111-53877130 | Msa0506980:intron | 20.0% |
| !! | AACATTATATTGAAGCATAA+AGG | - | chr3_4:53877288-53877307 | None:intergenic | 20.0% |
| ! | TTTATAGACTATATACTACC+TGG | - | chr3_4:53875461-53875480 | None:intergenic | 25.0% |
| !!! | CTCAACTATATTTTTATGAG+CGG | - | chr3_4:53875761-53875780 | None:intergenic | 25.0% |
| ! | GCACAAATATTTACTATGTT+CGG | - | chr3_4:53876068-53876087 | None:intergenic | 25.0% |
| ! | TATTGGTGGAATATAATTGA+AGG | - | chr3_4:53876569-53876588 | None:intergenic | 25.0% |
| !!! | AATATGTGGTGTTGATTTAT+TGG | - | chr3_4:53876586-53876605 | None:intergenic | 25.0% |
| !! | TCTCTCTTTGTTTAAATATG+TGG | - | chr3_4:53876600-53876619 | None:intergenic | 25.0% |
| !!! | TAAATAGTATCGATTAGGTA+CGG | - | chr3_4:53876662-53876681 | None:intergenic | 25.0% |
| ! | ATGATATGATATTTGATCGT+AGG | - | chr3_4:53876881-53876900 | None:intergenic | 25.0% |
| !!! | CGTTAGTAGTTTAATTTTCA+TGG | + | chr3_4:53876904-53876923 | Msa0506980:intron | 25.0% |
| ! | TAATTCATGTGTATCCATAT+TGG | + | chr3_4:53876947-53876966 | Msa0506980:intron | 25.0% |
| ! | TCTTGTAATTCTACCAAAAA+TGG | + | chr3_4:53877311-53877330 | Msa0506980:CDS | 25.0% |
| ! | CTTGTAATTCTACCAAAAAT+GGG | + | chr3_4:53877312-53877331 | Msa0506980:CDS | 25.0% |
| ! | TTTATAGACTATATACTACC+TGG | - | chr3_4:53875461-53875480 | None:intergenic | 25.0% |
| !!! | CTCAACTATATTTTTATGAG+CGG | - | chr3_4:53875761-53875780 | None:intergenic | 25.0% |
| ! | GCACAAATATTTACTATGTT+CGG | - | chr3_4:53876068-53876087 | None:intergenic | 25.0% |
| ! | TATTGGTGGAATATAATTGA+AGG | - | chr3_4:53876569-53876588 | None:intergenic | 25.0% |
| !!! | AATATGTGGTGTTGATTTAT+TGG | - | chr3_4:53876586-53876605 | None:intergenic | 25.0% |
| !! | TCTCTCTTTGTTTAAATATG+TGG | - | chr3_4:53876600-53876619 | None:intergenic | 25.0% |
| !!! | TAAATAGTATCGATTAGGTA+CGG | - | chr3_4:53876662-53876681 | None:intergenic | 25.0% |
| ! | ATGATATGATATTTGATCGT+AGG | - | chr3_4:53876881-53876900 | None:intergenic | 25.0% |
| !!! | CGTTAGTAGTTTAATTTTCA+TGG | + | chr3_4:53876904-53876923 | Msa0506980:intron | 25.0% |
| ! | TAATTCATGTGTATCCATAT+TGG | + | chr3_4:53876947-53876966 | Msa0506980:intron | 25.0% |
| ! | TCTTGTAATTCTACCAAAAA+TGG | + | chr3_4:53877311-53877330 | Msa0506980:CDS | 25.0% |
| ! | CTTGTAATTCTACCAAAAAT+GGG | + | chr3_4:53877312-53877331 | Msa0506980:CDS | 25.0% |
| ! | AATATGGTGGTGAAAGTTTA+TGG | + | chr3_4:53875312-53875331 | Msa0506980:exon | 30.0% |
| GTGCATATTGATCTTGATAA+AGG | + | chr3_4:53875405-53875424 | Msa0506980:CDS | 30.0% | |
| !! | GAAAGATACAAAAGCATCTA+GGG | - | chr3_4:53875492-53875511 | None:intergenic | 30.0% |
| !! | AGAAAGATACAAAAGCATCT+AGG | - | chr3_4:53875493-53875512 | None:intergenic | 30.0% |
| !! | GTTGAGATATCTTGGTTTTT+CGG | + | chr3_4:53875775-53875794 | Msa0506980:intron | 30.0% |
| TGAAGAGAAATGAGTAATTG+TGG | + | chr3_4:53876028-53876047 | Msa0506980:intron | 30.0% | |
| TGAGCACAAATTTAATTGAG+AGG | - | chr3_4:53876455-53876474 | None:intergenic | 30.0% | |
| !! | AAATAGTATCGATTAGGTAC+GGG | - | chr3_4:53876661-53876680 | None:intergenic | 30.0% |
| AATAGACATTACGTCATGTT+AGG | + | chr3_4:53876773-53876792 | Msa0506980:intron | 30.0% | |
| !! | GTCATGTTAGGCTTTTAAAA+CGG | + | chr3_4:53876785-53876804 | Msa0506980:intron | 30.0% |
| TCAATAAGATGTTCAATTCC+AGG | - | chr3_4:53877474-53877493 | None:intergenic | 30.0% | |
| TGGAATTGAACATCTTATTG+AGG | + | chr3_4:53877473-53877492 | Msa0506980:CDS | 30.0% | |
| ! | AATATGGTGGTGAAAGTTTA+TGG | + | chr3_4:53875312-53875331 | Msa0506980:exon | 30.0% |
| GTGCATATTGATCTTGATAA+AGG | + | chr3_4:53875405-53875424 | Msa0506980:CDS | 30.0% | |
| !! | GAAAGATACAAAAGCATCTA+GGG | - | chr3_4:53875492-53875511 | None:intergenic | 30.0% |
| !! | AGAAAGATACAAAAGCATCT+AGG | - | chr3_4:53875493-53875512 | None:intergenic | 30.0% |
| !! | GTTGAGATATCTTGGTTTTT+CGG | + | chr3_4:53875775-53875794 | Msa0506980:intron | 30.0% |
| TGAAGAGAAATGAGTAATTG+TGG | + | chr3_4:53876028-53876047 | Msa0506980:intron | 30.0% | |
| TGAGCACAAATTTAATTGAG+AGG | - | chr3_4:53876455-53876474 | None:intergenic | 30.0% | |
| !! | AAATAGTATCGATTAGGTAC+GGG | - | chr3_4:53876661-53876680 | None:intergenic | 30.0% |
| AATAGACATTACGTCATGTT+AGG | + | chr3_4:53876773-53876792 | Msa0506980:intron | 30.0% | |
| !! | GTCATGTTAGGCTTTTAAAA+CGG | + | chr3_4:53876785-53876804 | Msa0506980:intron | 30.0% |
| TCAATAAGATGTTCAATTCC+AGG | - | chr3_4:53877474-53877493 | None:intergenic | 30.0% | |
| TGGAATTGAACATCTTATTG+AGG | + | chr3_4:53877473-53877492 | Msa0506980:CDS | 30.0% | |
| ! | TTTCAGGTAACAAAAGAGCA+AGG | + | chr3_4:53875287-53875306 | Msa0506980:five_prime_UTR | 35.0% |
| TTCAGGTAACAAAAGAGCAA+GGG | + | chr3_4:53875288-53875307 | Msa0506980:five_prime_UTR | 35.0% | |
| ACAAAAGAGCAAGGGAAATA+TGG | + | chr3_4:53875296-53875315 | Msa0506980:exon | 35.0% | |
| ! | ATTCTACCTCTTTTTCCAAG+AGG | - | chr3_4:53875377-53875396 | None:intergenic | 35.0% |
| ATAGACTATATACTACCTGG+AGG | - | chr3_4:53875458-53875477 | None:intergenic | 35.0% | |
| ! | GTGTCGTTAATGATAAGCAA+CGG | + | chr3_4:53875541-53875560 | Msa0506980:intron | 35.0% |
| TGCGAAAAATAATTCCCGAA+AGG | + | chr3_4:53875596-53875615 | Msa0506980:intron | 35.0% | |
| GTAAAAACTATGAGCTGCTA+TGG | - | chr3_4:53875643-53875662 | None:intergenic | 35.0% | |
| !!! | CGTTAGATTTTTGGGATTAG+CGG | - | chr3_4:53875685-53875704 | None:intergenic | 35.0% |
| ! | ATTGCGAGCGTTAGATTTTT+GGG | - | chr3_4:53875693-53875712 | None:intergenic | 35.0% |
| ! | AATTGCGAGCGTTAGATTTT+TGG | - | chr3_4:53875694-53875713 | None:intergenic | 35.0% |
| !! | AGATATCTTGGTTTTTCGGA+TGG | + | chr3_4:53875779-53875798 | Msa0506980:intron | 35.0% |
| CATTTCTCTTCACTTAGTGT+AGG | - | chr3_4:53876020-53876039 | None:intergenic | 35.0% | |
| ACATTCTCATGAAATACGAG+TGG | - | chr3_4:53876300-53876319 | None:intergenic | 35.0% | |
| !!! | TTTTTATTTTCGCAGCCCTT+TGG | + | chr3_4:53876348-53876367 | Msa0506980:intron | 35.0% |
| ACTCTTTGGTGAGAATTTGT+TGG | + | chr3_4:53876404-53876423 | Msa0506980:intron | 35.0% | |
| !! | ATGTGGTGTTGATTTATTGG+TGG | - | chr3_4:53876583-53876602 | None:intergenic | 35.0% |
| ATATTTGCGTGAGCTTTCTA+AGG | - | chr3_4:53876849-53876868 | None:intergenic | 35.0% | |
| ! | TTGTGATTTGTGTAGAATCC+AGG | + | chr3_4:53877142-53877161 | Msa0506980:intron | 35.0% |
| ! | TGTGATTTGTGTAGAATCCA+GGG | + | chr3_4:53877143-53877162 | Msa0506980:intron | 35.0% |
| ! | AACTTTAGAAGAGAAAGCTG+TGG | + | chr3_4:53877224-53877243 | Msa0506980:CDS | 35.0% |
| AGAAAGCTGTGGTAAATCAA+TGG | + | chr3_4:53877235-53877254 | Msa0506980:CDS | 35.0% | |
| !! | TCTAAAAGCACTTATCTTGC+TGG | + | chr3_4:53877414-53877433 | Msa0506980:CDS | 35.0% |
| TCTTATTGAGGCAGCAAAAT+TGG | + | chr3_4:53877485-53877504 | Msa0506980:CDS | 35.0% | |
| CTTATTGAGGCAGCAAAATT+GGG | + | chr3_4:53877486-53877505 | Msa0506980:CDS | 35.0% | |
| TTGGAAGAAGTTGAAGGAAT+TGG | + | chr3_4:53877572-53877591 | Msa0506980:CDS | 35.0% | |
| AAGTTGAAGGAATTGGCATA+AGG | + | chr3_4:53877579-53877598 | Msa0506980:CDS | 35.0% | |
| AGTTGAAGGAATTGGCATAA+GGG | + | chr3_4:53877580-53877599 | Msa0506980:CDS | 35.0% | |
| ! | TTTCAGGTAACAAAAGAGCA+AGG | + | chr3_4:53875287-53875306 | Msa0506980:five_prime_UTR | 35.0% |
| TTCAGGTAACAAAAGAGCAA+GGG | + | chr3_4:53875288-53875307 | Msa0506980:five_prime_UTR | 35.0% | |
| ACAAAAGAGCAAGGGAAATA+TGG | + | chr3_4:53875296-53875315 | Msa0506980:exon | 35.0% | |
| ! | ATTCTACCTCTTTTTCCAAG+AGG | - | chr3_4:53875377-53875396 | None:intergenic | 35.0% |
| ATAGACTATATACTACCTGG+AGG | - | chr3_4:53875458-53875477 | None:intergenic | 35.0% | |
| ! | GTGTCGTTAATGATAAGCAA+CGG | + | chr3_4:53875541-53875560 | Msa0506980:intron | 35.0% |
| TGCGAAAAATAATTCCCGAA+AGG | + | chr3_4:53875596-53875615 | Msa0506980:intron | 35.0% | |
| GTAAAAACTATGAGCTGCTA+TGG | - | chr3_4:53875643-53875662 | None:intergenic | 35.0% | |
| !!! | CGTTAGATTTTTGGGATTAG+CGG | - | chr3_4:53875685-53875704 | None:intergenic | 35.0% |
| ! | ATTGCGAGCGTTAGATTTTT+GGG | - | chr3_4:53875693-53875712 | None:intergenic | 35.0% |
| ! | AATTGCGAGCGTTAGATTTT+TGG | - | chr3_4:53875694-53875713 | None:intergenic | 35.0% |
| !! | AGATATCTTGGTTTTTCGGA+TGG | + | chr3_4:53875779-53875798 | Msa0506980:intron | 35.0% |
| CATTTCTCTTCACTTAGTGT+AGG | - | chr3_4:53876020-53876039 | None:intergenic | 35.0% | |
| ACATTCTCATGAAATACGAG+TGG | - | chr3_4:53876300-53876319 | None:intergenic | 35.0% | |
| !!! | TTTTTATTTTCGCAGCCCTT+TGG | + | chr3_4:53876348-53876367 | Msa0506980:intron | 35.0% |
| ACTCTTTGGTGAGAATTTGT+TGG | + | chr3_4:53876404-53876423 | Msa0506980:intron | 35.0% | |
| !! | ATGTGGTGTTGATTTATTGG+TGG | - | chr3_4:53876583-53876602 | None:intergenic | 35.0% |
| ATATTTGCGTGAGCTTTCTA+AGG | - | chr3_4:53876849-53876868 | None:intergenic | 35.0% | |
| ! | TTGTGATTTGTGTAGAATCC+AGG | + | chr3_4:53877142-53877161 | Msa0506980:intron | 35.0% |
| ! | TGTGATTTGTGTAGAATCCA+GGG | + | chr3_4:53877143-53877162 | Msa0506980:intron | 35.0% |
| ! | AACTTTAGAAGAGAAAGCTG+TGG | + | chr3_4:53877224-53877243 | Msa0506980:CDS | 35.0% |
| AGAAAGCTGTGGTAAATCAA+TGG | + | chr3_4:53877235-53877254 | Msa0506980:CDS | 35.0% | |
| !! | TCTAAAAGCACTTATCTTGC+TGG | + | chr3_4:53877414-53877433 | Msa0506980:CDS | 35.0% |
| TCTTATTGAGGCAGCAAAAT+TGG | + | chr3_4:53877485-53877504 | Msa0506980:CDS | 35.0% | |
| CTTATTGAGGCAGCAAAATT+GGG | + | chr3_4:53877486-53877505 | Msa0506980:CDS | 35.0% | |
| TTGGAAGAAGTTGAAGGAAT+TGG | + | chr3_4:53877572-53877591 | Msa0506980:CDS | 35.0% | |
| AAAGAGCAAGGGAAATATGG+TGG | + | chr3_4:53875299-53875318 | Msa0506980:exon | 40.0% | |
| TATATACTACCTGGAGGAGA+AGG | - | chr3_4:53875452-53875471 | None:intergenic | 40.0% | |
| ! | TTTGGGATTAGCGGAATACA+AGG | - | chr3_4:53875676-53875695 | None:intergenic | 40.0% |
| ! | CAATTTGTTCGCAATAGCCT+CGG | + | chr3_4:53875709-53875728 | Msa0506980:intron | 40.0% |
| TAGCGAAGGAAATTATTCCG+AGG | - | chr3_4:53875729-53875748 | None:intergenic | 40.0% | |
| ACAACTGGAACTTGACCAAA+GGG | - | chr3_4:53876366-53876385 | None:intergenic | 40.0% | |
| TACAACTGGAACTTGACCAA+AGG | - | chr3_4:53876367-53876386 | None:intergenic | 40.0% | |
| AAATCACCATCCTCTACAAC+TGG | - | chr3_4:53876381-53876400 | None:intergenic | 40.0% | |
| GATGGTGATTTCAGACTCTT+TGG | + | chr3_4:53876390-53876409 | Msa0506980:CDS | 40.0% | |
| !! | AACAAAGAGAGAGCACCAAT+TGG | + | chr3_4:53876608-53876627 | Msa0506980:intron | 40.0% |
| !! | ACAAAGAGAGAGCACCAATT+GGG | + | chr3_4:53876609-53876628 | Msa0506980:intron | 40.0% |
| AACAGATCAGCAAGCCAATA+TGG | - | chr3_4:53876964-53876983 | None:intergenic | 40.0% | |
| TAGAATCCAGGGCTATTGTA+AGG | + | chr3_4:53877154-53877173 | Msa0506980:intron | 40.0% | |
| AAAGTTGTGCCAAGTAAGTC+AGG | - | chr3_4:53877210-53877229 | None:intergenic | 40.0% | |
| TGAGCTATAGTTATGTCTCC+AGG | - | chr3_4:53877342-53877361 | None:intergenic | 40.0% | |
| TGCTTGATGTGTATGAACGT+AGG | + | chr3_4:53877388-53877407 | Msa0506980:CDS | 40.0% | |
| TGCTGGTGATAAGTTCACTT+TGG | + | chr3_4:53877431-53877450 | Msa0506980:CDS | 40.0% | |
| GATGTTCAATTCCAGGAAGA+TGG | - | chr3_4:53877467-53877486 | None:intergenic | 40.0% | |
| TGGGACATTTGATTAGTGAG+AGG | + | chr3_4:53877505-53877524 | Msa0506980:CDS | 40.0% | |
| AGAGGAAGAATGTGAATGCT+TGG | + | chr3_4:53877523-53877542 | Msa0506980:CDS | 40.0% | |
| GAAGAATGTGAATGCTTGGT+GGG | + | chr3_4:53877527-53877546 | Msa0506980:CDS | 40.0% | |
| !! | GGTGGGAGAAAATTTCTAGT+AGG | + | chr3_4:53877544-53877563 | Msa0506980:CDS | 40.0% |
| !! | AAATTTCTAGTAGGCCAGCT+TGG | + | chr3_4:53877553-53877572 | Msa0506980:CDS | 40.0% |
| AAAGAGCAAGGGAAATATGG+TGG | + | chr3_4:53875299-53875318 | Msa0506980:exon | 40.0% | |
| TATATACTACCTGGAGGAGA+AGG | - | chr3_4:53875452-53875471 | None:intergenic | 40.0% | |
| ! | TTTGGGATTAGCGGAATACA+AGG | - | chr3_4:53875676-53875695 | None:intergenic | 40.0% |
| ! | CAATTTGTTCGCAATAGCCT+CGG | + | chr3_4:53875709-53875728 | Msa0506980:intron | 40.0% |
| TAGCGAAGGAAATTATTCCG+AGG | - | chr3_4:53875729-53875748 | None:intergenic | 40.0% | |
| ACAACTGGAACTTGACCAAA+GGG | - | chr3_4:53876366-53876385 | None:intergenic | 40.0% | |
| TACAACTGGAACTTGACCAA+AGG | - | chr3_4:53876367-53876386 | None:intergenic | 40.0% | |
| AAATCACCATCCTCTACAAC+TGG | - | chr3_4:53876381-53876400 | None:intergenic | 40.0% | |
| GATGGTGATTTCAGACTCTT+TGG | + | chr3_4:53876390-53876409 | Msa0506980:CDS | 40.0% | |
| !! | AACAAAGAGAGAGCACCAAT+TGG | + | chr3_4:53876608-53876627 | Msa0506980:intron | 40.0% |
| !! | ACAAAGAGAGAGCACCAATT+GGG | + | chr3_4:53876609-53876628 | Msa0506980:intron | 40.0% |
| AACAGATCAGCAAGCCAATA+TGG | - | chr3_4:53876964-53876983 | None:intergenic | 40.0% | |
| TAGAATCCAGGGCTATTGTA+AGG | + | chr3_4:53877154-53877173 | Msa0506980:intron | 40.0% | |
| AAAGTTGTGCCAAGTAAGTC+AGG | - | chr3_4:53877210-53877229 | None:intergenic | 40.0% | |
| TGAGCTATAGTTATGTCTCC+AGG | - | chr3_4:53877342-53877361 | None:intergenic | 40.0% | |
| TGCTTGATGTGTATGAACGT+AGG | + | chr3_4:53877388-53877407 | Msa0506980:CDS | 40.0% | |
| TGCTGGTGATAAGTTCACTT+TGG | + | chr3_4:53877431-53877450 | Msa0506980:CDS | 40.0% | |
| GATGTTCAATTCCAGGAAGA+TGG | - | chr3_4:53877467-53877486 | None:intergenic | 40.0% | |
| TGGGACATTTGATTAGTGAG+AGG | + | chr3_4:53877505-53877524 | Msa0506980:CDS | 40.0% | |
| AGAGGAAGAATGTGAATGCT+TGG | + | chr3_4:53877523-53877542 | Msa0506980:CDS | 40.0% | |
| GAAGAATGTGAATGCTTGGT+GGG | + | chr3_4:53877527-53877546 | Msa0506980:CDS | 40.0% | |
| !! | GGTGGGAGAAAATTTCTAGT+AGG | + | chr3_4:53877544-53877563 | Msa0506980:CDS | 40.0% |
| !! | AAATTTCTAGTAGGCCAGCT+TGG | + | chr3_4:53877553-53877572 | Msa0506980:CDS | 40.0% |
| TTAATGCAGCATGTCCTCAG+AGG | + | chr3_4:53875340-53875359 | Msa0506980:CDS | 45.0% | |
| TAATGCAGCATGTCCTCAGA+GGG | + | chr3_4:53875341-53875360 | Msa0506980:CDS | 45.0% | |
| TACGTGTGTCGCAAACCTTT+CGG | - | chr3_4:53875614-53875633 | None:intergenic | 45.0% | |
| TAGCGGAATACAAGGATGGT+TGG | - | chr3_4:53875668-53875687 | None:intergenic | 45.0% | |
| ! | GGATTAGCGGAATACAAGGA+TGG | - | chr3_4:53875672-53875691 | None:intergenic | 45.0% |
| TGGTCAAGTTCCAGTTGTAG+AGG | + | chr3_4:53876368-53876387 | Msa0506980:CDS | 45.0% | |
| CAAGTTCCAGTTGTAGAGGA+TGG | + | chr3_4:53876372-53876391 | Msa0506980:CDS | 45.0% | |
| !! | GTATCGATTAGGTACGGGTT+TGG | - | chr3_4:53876656-53876675 | None:intergenic | 45.0% |
| ACAGTACCTTACAATAGCCC+TGG | - | chr3_4:53877163-53877182 | None:intergenic | 45.0% | |
| CTACCAAAAATGGGTAAGCC+TGG | + | chr3_4:53877321-53877340 | Msa0506980:CDS | 45.0% | |
| ! | TCTCCAGGCTTACCCATTTT+TGG | - | chr3_4:53877327-53877346 | None:intergenic | 45.0% |
| GGAAGAATGTGAATGCTTGG+TGG | + | chr3_4:53877526-53877545 | Msa0506980:CDS | 45.0% | |
| TCCTTCAACTTCTTCCAAGC+TGG | - | chr3_4:53877570-53877589 | None:intergenic | 45.0% | |
| TTAATGCAGCATGTCCTCAG+AGG | + | chr3_4:53875340-53875359 | Msa0506980:CDS | 45.0% | |
| TAATGCAGCATGTCCTCAGA+GGG | + | chr3_4:53875341-53875360 | Msa0506980:CDS | 45.0% | |
| TACGTGTGTCGCAAACCTTT+CGG | - | chr3_4:53875614-53875633 | None:intergenic | 45.0% | |
| TAGCGGAATACAAGGATGGT+TGG | - | chr3_4:53875668-53875687 | None:intergenic | 45.0% | |
| ! | GGATTAGCGGAATACAAGGA+TGG | - | chr3_4:53875672-53875691 | None:intergenic | 45.0% |
| TGGTCAAGTTCCAGTTGTAG+AGG | + | chr3_4:53876368-53876387 | Msa0506980:CDS | 45.0% | |
| CAAGTTCCAGTTGTAGAGGA+TGG | + | chr3_4:53876372-53876391 | Msa0506980:CDS | 45.0% | |
| !! | GTATCGATTAGGTACGGGTT+TGG | - | chr3_4:53876656-53876675 | None:intergenic | 45.0% |
| ACAGTACCTTACAATAGCCC+TGG | - | chr3_4:53877163-53877182 | None:intergenic | 45.0% | |
| CTACCAAAAATGGGTAAGCC+TGG | + | chr3_4:53877321-53877340 | Msa0506980:CDS | 45.0% | |
| ! | TCTCCAGGCTTACCCATTTT+TGG | - | chr3_4:53877327-53877346 | None:intergenic | 45.0% |
| GGAAGAATGTGAATGCTTGG+TGG | + | chr3_4:53877526-53877545 | Msa0506980:CDS | 45.0% | |
| TCCTTCAACTTCTTCCAAGC+TGG | - | chr3_4:53877570-53877589 | None:intergenic | 45.0% | |
| GGCTTGCCTCTTGGAAAAAG+AGG | + | chr3_4:53875368-53875387 | Msa0506980:CDS | 50.0% | |
| ACGTGTGTCGCAAACCTTTC+GGG | - | chr3_4:53875613-53875632 | None:intergenic | 50.0% | |
| !! | AGCGGTGCTATTGATAGCGA+AGG | - | chr3_4:53875743-53875762 | None:intergenic | 50.0% |
| ! | TACGGGTTTGGTATCCCATG+TGG | - | chr3_4:53876644-53876663 | None:intergenic | 50.0% |
| TGCCAAGTAAGTCAGGACCA+CGG | - | chr3_4:53877203-53877222 | None:intergenic | 50.0% | |
| GCTGATCTTAGCCATCTTCC+TGG | + | chr3_4:53877453-53877472 | Msa0506980:CDS | 50.0% | |
| GCCAGCTTGGAAGAAGTTGA+AGG | + | chr3_4:53877566-53877585 | Msa0506980:CDS | 50.0% | |
| GGCTTGCCTCTTGGAAAAAG+AGG | + | chr3_4:53875368-53875387 | Msa0506980:CDS | 50.0% | |
| ACGTGTGTCGCAAACCTTTC+GGG | - | chr3_4:53875613-53875632 | None:intergenic | 50.0% | |
| !! | AGCGGTGCTATTGATAGCGA+AGG | - | chr3_4:53875743-53875762 | None:intergenic | 50.0% |
| ! | TACGGGTTTGGTATCCCATG+TGG | - | chr3_4:53876644-53876663 | None:intergenic | 50.0% |
| TGCCAAGTAAGTCAGGACCA+CGG | - | chr3_4:53877203-53877222 | None:intergenic | 50.0% | |
| GCTGATCTTAGCCATCTTCC+TGG | + | chr3_4:53877453-53877472 | Msa0506980:CDS | 50.0% | |
| GCCAGCTTGGAAGAAGTTGA+AGG | + | chr3_4:53877566-53877585 | Msa0506980:CDS | 50.0% | |
| AGCATGTCCTCAGAGGGTGA+TGG | + | chr3_4:53875347-53875366 | Msa0506980:CDS | 55.0% | |
| ACCTGAGTTCCTTCTCCTCC+AGG | + | chr3_4:53875440-53875459 | Msa0506980:CDS | 55.0% | |
| ACCTGGAGGAGAAGGAACTC+AGG | - | chr3_4:53875444-53875463 | None:intergenic | 55.0% | |
| GAGCACCAATTGGGACGACA+TGG | + | chr3_4:53876618-53876637 | Msa0506980:intron | 55.0% | |
| TGTGGCCATGTCGTCCCAAT+TGG | - | chr3_4:53876626-53876645 | None:intergenic | 55.0% | |
| ATTGGGACGACATGGCCACA+TGG | + | chr3_4:53876626-53876645 | Msa0506980:intron | 55.0% | |
| TTGGGACGACATGGCCACAT+GGG | + | chr3_4:53876627-53876646 | Msa0506980:intron | 55.0% | |
| GCAGCAAAGTATGCAGACCG+TGG | + | chr3_4:53877183-53877202 | Msa0506980:CDS | 55.0% | |
| GACCGTGGTCCTGACTTACT+TGG | + | chr3_4:53877198-53877217 | Msa0506980:CDS | 55.0% | |
| AGCATGTCCTCAGAGGGTGA+TGG | + | chr3_4:53875347-53875366 | Msa0506980:CDS | 55.0% | |
| ACCTGAGTTCCTTCTCCTCC+AGG | + | chr3_4:53875440-53875459 | Msa0506980:CDS | 55.0% | |
| ACCTGGAGGAGAAGGAACTC+AGG | - | chr3_4:53875444-53875463 | None:intergenic | 55.0% | |
| GAGCACCAATTGGGACGACA+TGG | + | chr3_4:53876618-53876637 | Msa0506980:intron | 55.0% | |
| TGTGGCCATGTCGTCCCAAT+TGG | - | chr3_4:53876626-53876645 | None:intergenic | 55.0% | |
| ATTGGGACGACATGGCCACA+TGG | + | chr3_4:53876626-53876645 | Msa0506980:intron | 55.0% | |
| TTGGGACGACATGGCCACAT+GGG | + | chr3_4:53876627-53876646 | Msa0506980:intron | 55.0% | |
| GCAGCAAAGTATGCAGACCG+TGG | + | chr3_4:53877183-53877202 | Msa0506980:CDS | 55.0% | |
| GACCGTGGTCCTGACTTACT+TGG | + | chr3_4:53877198-53877217 | Msa0506980:CDS | 55.0% | |
| AGGCAAGCCATCACCCTCTG+AGG | - | chr3_4:53875357-53875376 | None:intergenic | 60.0% | |
| ! | GAGGGTGATGGCTTGCCTCT+TGG | + | chr3_4:53875359-53875378 | Msa0506980:CDS | 60.0% |
| AGGCAAGCCATCACCCTCTG+AGG | - | chr3_4:53875357-53875376 | None:intergenic | 60.0% | |
| ! | GAGGGTGATGGCTTGCCTCT+TGG | + | chr3_4:53875359-53875378 | Msa0506980:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 53875282 | 53877599 | 53875282 | ID=Msa0506980;Name=Msa0506980 |
| chr3_4 | mRNA | 53875282 | 53877599 | 53875282 | ID=Msa0506980-mRNA-1;Parent=Msa0506980;Name=Msa0506980-mRNA-1;_AED=0.04;_eAED=0.04;_QI=33|1|0.66|1|1|1|3|0|212 |
| chr3_4 | exon | 53875282 | 53875461 | 53875282 | ID=Msa0506980-mRNA-1:exon:11939;Parent=Msa0506980-mRNA-1 |
| chr3_4 | exon | 53876363 | 53876411 | 53876363 | ID=Msa0506980-mRNA-1:exon:11940;Parent=Msa0506980-mRNA-1 |
| chr3_4 | exon | 53877157 | 53877599 | 53877157 | ID=Msa0506980-mRNA-1:exon:11941;Parent=Msa0506980-mRNA-1 |
| chr3_4 | five_prime_UTR | 53875282 | 53875314 | 53875282 | ID=Msa0506980-mRNA-1:five_prime_utr;Parent=Msa0506980-mRNA-1 |
| chr3_4 | CDS | 53875315 | 53875461 | 53875315 | ID=Msa0506980-mRNA-1:cds;Parent=Msa0506980-mRNA-1 |
| chr3_4 | CDS | 53876363 | 53876411 | 53876363 | ID=Msa0506980-mRNA-1:cds;Parent=Msa0506980-mRNA-1 |
| chr3_4 | CDS | 53877157 | 53877599 | 53877157 | ID=Msa0506980-mRNA-1:cds;Parent=Msa0506980-mRNA-1 |
| Gene Sequence |
| Protein sequence |
