AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1018710

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1018710 MtrunA17_Chr7g0234091 88.766 543 55 2 1 543 1 537 0.0 964
Msa1018710 MtrunA17_Chr7g0234111 84.530 543 78 2 1 543 1 537 0.0 921
Msa1018710 MtrunA17_Chr7g0234131 79.444 540 106 1 1 540 1 535 0.0 870
Msa1018710 MtrunA17_Chr7g0230651 63.073 371 131 1 114 484 12 376 3.81e-170 486
Msa1018710 MtrunA17_Chr6g0482131 44.142 478 246 5 81 539 37 512 3.24e-136 405
Msa1018710 MtrunA17_Chr4g0033271 43.326 487 251 7 74 539 29 511 1.45e-134 400
Msa1018710 MtrunA17_Chr4g0033191 43.243 481 254 4 81 543 44 523 1.94e-134 400
Msa1018710 MtrunA17_Chr6g0482071 42.387 486 260 5 73 539 29 513 1.37e-133 398
Msa1018710 MtrunA17_Chr7g0236731 78.543 247 52 1 161 406 27 273 1.97e-133 389
Msa1018710 MtrunA17_Chr4g0033331 43.154 482 251 5 81 542 40 518 8.86e-133 396
Msa1018710 MtrunA17_Chr4g0033401 42.857 483 253 5 81 543 35 514 1.98e-132 395
Msa1018710 MtrunA17_Chr4g0033201 43.396 477 251 5 81 539 37 512 2.88e-132 394
Msa1018710 MtrunA17_Chr6g0482081 43.487 476 249 7 81 537 37 511 1.31e-131 393
Msa1018710 MtrunA17_Chr2g0329191 42.917 480 248 7 81 539 35 509 3.92e-130 389
Msa1018710 MtrunA17_Chr4g0033321 41.975 486 253 6 81 543 34 513 5.48e-130 389
Msa1018710 MtrunA17_Chr3g0088441 42.116 482 256 5 81 542 39 517 6.07e-128 384
Msa1018710 MtrunA17_Chr4g0033311 41.909 482 257 5 81 542 40 518 1.33e-127 383
Msa1018710 MtrunA17_Chr2g0329201 41.929 477 258 4 81 539 32 507 1.84e-127 382
Msa1018710 MtrunA17_Chr4g0033341 42.797 479 251 7 81 540 70 544 1.60e-126 381
Msa1018710 MtrunA17_Chr4g0033231 40.452 487 242 7 73 539 35 493 5.03e-124 373
Msa1018710 MtrunA17_Chr4g0010501 40.994 483 260 7 75 539 19 494 3.44e-123 370
Msa1018710 MtrunA17_Chr4g0033261 40.120 501 250 7 69 539 13 493 5.96e-122 367
Msa1018710 MtrunA17_Chr4g0043091 39.121 478 265 8 81 537 29 501 2.05e-117 356
Msa1018710 MtrunA17_Chr4g0006111 40.041 487 249 7 75 539 60 525 3.87e-113 346
Msa1018710 MtrunA17_Chr3g0090131 39.659 469 263 8 81 537 22 482 4.15e-113 345
Msa1018710 MtrunA17_Chr3g0090111 38.854 471 263 9 81 537 20 479 1.17e-112 343
Msa1018710 MtrunA17_Chr3g0087261 39.331 478 265 7 81 539 38 509 2.07e-110 338
Msa1018710 MtrunA17_Chr2g0329321 37.888 483 243 7 81 539 39 488 2.04e-109 335
Msa1018710 MtrunA17_Chr7g0242681 39.530 468 257 10 85 537 43 499 2.67e-109 336
Msa1018710 MtrunA17_Chr4g0006131 37.747 506 272 11 57 540 18 502 1.88e-108 333
Msa1018710 MtrunA17_Chr4g0042171 37.945 477 271 7 82 537 26 498 2.03e-107 331
Msa1018710 MtrunA17_Chr3g0087271 40.246 487 257 8 76 539 35 510 6.18e-107 329
Msa1018710 MtrunA17_Chr6g0482941 38.347 472 267 8 85 539 48 512 1.15e-105 326
Msa1018710 MtrunA17_Chr7g0242691 37.975 474 269 9 81 539 32 495 2.38e-105 325
Msa1018710 MtrunA17_Chr6g0482951 38.316 475 263 8 85 539 48 512 8.87e-105 324
Msa1018710 MtrunA17_Chr5g0430451 39.220 487 240 7 81 539 40 498 7.29e-104 321
Msa1018710 MtrunA17_Chr4g0006971 38.593 469 261 9 85 537 32 489 8.86e-104 322
Msa1018710 MtrunA17_Chr7g0227561 49.271 343 111 6 6 341 1 287 3.99e-103 312
Msa1018710 MtrunA17_Chr2g0317841 39.540 478 261 11 81 537 33 503 2.32e-102 318
Msa1018710 MtrunA17_Chr2g0301231 42.788 416 197 10 141 539 1 392 3.53e-102 313
Msa1018710 MtrunA17_Chr2g0317821 38.320 488 253 10 81 537 33 503 5.81e-102 317
Msa1018710 MtrunA17_Chr4g0074551 37.053 475 274 9 85 539 55 524 1.85e-101 317
Msa1018710 MtrunA17_Chr4g0074561 36.786 473 277 6 85 537 40 510 4.93e-100 312
Msa1018710 MtrunA17_Chr1g0195611 38.478 473 254 13 85 537 32 487 1.21e-99 310
Msa1018710 MtrunA17_Chr5g0428831 37.632 473 259 12 85 537 32 488 8.64e-99 308
Msa1018710 MtrunA17_Chr2g0288021 35.510 490 285 10 73 539 28 509 1.55e-98 308
Msa1018710 MtrunA17_Chr2g0288071 36.952 479 262 9 89 539 76 542 2.86e-97 306
Msa1018710 MtrunA17_Chr1g0195641 38.601 386 208 10 85 454 32 404 1.05e-77 250
Msa1018710 MtrunA17_Chr5g0418871 42.282 298 154 5 101 384 4 297 5.48e-76 243
Msa1018710 MtrunA17_Chr3g0087201 36.950 341 191 7 213 537 10 342 1.21e-71 232
Msa1018710 MtrunA17_Chr3g0087191 45.455 154 77 2 70 216 12 165 4.84e-42 148
Msa1018710 MtrunA17_Chr4g0068871 25.743 404 221 13 137 526 183 521 1.74e-26 114
Msa1018710 MtrunA17_Chr7g0236741 78.571 56 12 0 485 540 10 65 7.01e-25 97.8
Msa1018710 MtrunA17_Chr8g0352881 47.917 96 50 0 293 388 57 152 3.16e-24 99.4
Msa1018710 MtrunA17_Chr7g0227591 68.421 57 18 0 485 541 13 69 7.98e-22 89.4
Msa1018710 MtrunA17_Chr7g0227581 67.241 58 19 0 348 405 1 58 1.55e-19 82.8
Msa1018710 MtrunA17_Chr5g0418861 38.824 85 51 1 455 538 7 91 1.38e-16 75.1
Msa1018710 MtrunA17_Chr7g0230641 57.447 47 18 1 71 117 8 52 8.97e-13 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1018710 AT2G44480.1 40.574 488 262 7 73 538 28 509 1.15e-122 370
Msa1018710 AT2G44480.3 40.574 488 262 7 73 538 59 540 2.05e-122 371
Msa1018710 AT2G44450.1 41.336 479 263 6 75 537 24 500 1.71e-120 364
Msa1018710 AT5G44640.1 40.164 488 275 6 66 538 17 502 4.23e-118 358
Msa1018710 AT3G60140.1 38.229 497 278 7 69 541 15 506 4.25e-116 355
Msa1018710 AT3G60130.1 40.803 473 253 7 85 537 35 500 1.01e-115 352
Msa1018710 AT5G42260.1 41.113 467 258 6 82 533 33 497 2.84e-115 351
Msa1018710 AT1G26560.1 38.333 480 267 8 81 537 33 506 2.84e-112 343
Msa1018710 AT2G44470.3 38.174 482 271 7 81 539 30 507 5.37e-112 345
Msa1018710 AT5G36890.2 39.832 477 259 9 81 540 17 482 4.44e-111 340
Msa1018710 AT5G36890.1 39.832 477 259 9 81 540 17 482 7.65e-111 339
Msa1018710 AT3G62750.1 41.266 458 252 8 85 537 28 473 2.60e-110 338
Msa1018710 AT2G44480.2 41.889 413 219 6 141 538 1 407 3.43e-110 335
Msa1018710 AT3G60120.1 38.809 487 258 9 82 539 16 491 3.71e-110 339
Msa1018710 AT3G62750.2 41.266 458 252 8 85 537 54 499 5.63e-110 338
Msa1018710 AT4G27830.1 39.959 483 263 10 70 537 14 484 1.43e-109 336
Msa1018710 AT5G24550.1 37.597 516 284 10 55 542 9 514 7.90e-109 335
Msa1018710 AT2G25630.1 38.641 471 255 6 82 537 32 483 4.98e-108 332
Msa1018710 AT1G51470.1 39.752 483 261 12 75 539 41 511 7.81e-108 332
Msa1018710 AT2G44490.1 37.372 487 270 9 82 540 16 495 1.23e-105 328
Msa1018710 AT1G47600.2 37.996 479 274 9 75 539 41 510 1.27e-105 326
Msa1018710 AT3G18080.1 37.759 482 271 10 81 542 40 512 1.80e-105 326
Msa1018710 AT1G47600.1 37.996 479 275 9 75 539 41 511 5.41e-105 325
Msa1018710 AT4G27820.1 40.803 473 244 12 84 537 27 482 1.14e-104 323
Msa1018710 AT2G44460.1 38.382 482 265 9 81 537 30 504 3.40e-104 325
Msa1018710 AT3G62740.1 38.696 460 266 7 85 537 28 478 1.41e-103 321
Msa1018710 AT3G18070.3 36.929 482 267 10 81 542 31 495 1.43e-103 320
Msa1018710 AT5G54570.1 36.008 486 281 9 76 537 26 505 1.76e-103 322
Msa1018710 AT3G18070.1 36.929 482 273 10 81 542 31 501 2.74e-103 320
Msa1018710 AT3G60130.2 40.426 423 238 5 125 537 30 448 3.64e-103 318
Msa1018710 AT5G24540.1 37.769 511 290 9 55 542 9 514 5.55e-103 320
Msa1018710 AT1G61820.1 36.381 514 283 13 64 541 3 508 9.27e-103 319
Msa1018710 AT1G02850.2 37.872 470 268 8 85 541 31 489 6.79e-102 316
Msa1018710 AT3G60130.3 40.189 423 228 6 125 537 30 437 3.54e-101 313
Msa1018710 AT1G61810.1 36.402 478 279 10 81 537 34 507 1.06e-100 314
Msa1018710 AT4G21760.2 36.653 472 271 9 85 537 59 521 3.23e-100 313
Msa1018710 AT3G09260.1 36.550 487 277 9 81 542 36 515 3.30e-100 313
Msa1018710 AT1G45191.4 37.764 474 268 10 76 537 25 483 3.63e-100 312
Msa1018710 AT3G21370.1 37.475 491 270 10 81 542 34 516 7.05e-100 312
Msa1018710 AT1G66280.1 36.595 511 292 11 55 542 14 515 8.74e-100 311
Msa1018710 AT3G03640.1 37.577 487 278 9 76 539 31 514 3.27e-99 310
Msa1018710 AT1G45191.2 36.875 480 270 9 76 537 25 489 2.13e-98 308
Msa1018710 AT1G45191.6 37.113 485 267 11 76 537 25 494 2.53e-98 308
Msa1018710 AT1G66270.1 36.111 504 288 10 63 542 22 515 2.68e-98 308
Msa1018710 AT1G45191.1 36.821 497 264 12 76 537 25 506 4.73e-98 307
Msa1018710 AT4G22100.1 37.029 478 284 9 70 537 12 482 6.38e-98 306
Msa1018710 AT1G02850.5 36.105 493 268 9 85 541 31 512 7.37e-98 306
Msa1018710 AT4G21760.1 36.441 472 262 8 85 537 59 511 9.14e-98 307
Msa1018710 AT4G27830.2 40.943 403 219 7 144 537 4 396 3.43e-97 301
Msa1018710 AT5G25980.2 36.820 478 275 11 81 537 51 522 1.00e-96 304
Msa1018710 AT1G60090.2 36.538 468 276 10 81 537 25 482 1.21e-96 303
Msa1018710 AT2G32860.2 34.915 527 314 10 34 537 51 571 2.01e-96 306
Msa1018710 AT3G62750.6 41.310 397 218 7 144 537 4 388 2.23e-96 299
Msa1018710 AT3G62750.5 41.310 397 218 7 144 537 4 388 2.23e-96 299
Msa1018710 AT1G02850.4 36.032 494 268 10 85 541 31 513 2.67e-96 303
Msa1018710 AT1G75940.1 36.680 488 268 11 82 537 39 517 4.15e-96 302
Msa1018710 AT2G32860.1 34.725 527 314 10 34 537 51 570 1.05e-95 304
Msa1018710 AT5G28510.1 36.680 488 280 9 81 542 40 524 2.38e-95 300
Msa1018710 AT1G66270.2 35.714 504 288 11 63 542 22 513 1.07e-94 298
Msa1018710 AT1G61810.3 35.914 465 273 10 81 524 34 494 4.86e-94 297
Msa1018710 AT1G60090.1 35.774 478 273 11 81 537 25 489 1.09e-93 295
Msa1018710 AT1G02850.1 36.596 470 247 9 85 541 31 462 6.81e-93 292
Msa1018710 AT3G60140.2 38.520 392 224 4 81 457 27 416 7.46e-93 291
Msa1018710 AT3G62750.4 40.887 406 224 7 85 486 54 447 1.19e-91 288
Msa1018710 AT5G54570.2 36.740 411 243 7 141 537 1 408 1.41e-91 288
Msa1018710 AT1G61810.5 37.713 411 238 8 141 537 1 407 1.84e-91 286
Msa1018710 AT2G44470.1 37.647 425 239 6 81 483 30 450 3.19e-91 287
Msa1018710 AT1G52400.3 35.616 511 279 13 61 537 21 515 1.44e-90 288
Msa1018710 AT1G52400.1 35.616 511 279 13 61 537 21 515 1.44e-90 288
Msa1018710 AT4G27820.2 40.580 414 212 11 141 537 1 397 1.80e-90 284
Msa1018710 AT4G27820.3 40.580 414 212 11 141 537 1 397 1.80e-90 284
Msa1018710 AT3G62740.2 38.519 405 234 6 85 483 28 423 2.24e-87 276
Msa1018710 AT5G54570.3 35.963 431 247 8 76 483 26 450 4.44e-87 276
Msa1018710 AT5G26000.1 34.545 495 278 12 74 537 32 511 8.66e-87 278
Msa1018710 AT5G25980.3 37.028 424 238 9 81 483 51 466 5.58e-85 271
Msa1018710 AT5G25980.1 37.028 424 238 9 81 483 51 466 5.58e-85 271
Msa1018710 AT5G24540.2 37.472 451 255 8 55 483 9 454 5.43e-84 268
Msa1018710 AT2G44480.4 43.260 319 164 5 73 377 59 374 7.41e-84 266
Msa1018710 AT3G62750.7 43.831 308 162 4 85 388 28 328 4.10e-83 263
Msa1018710 AT3G62750.8 43.831 308 162 4 85 388 28 328 4.10e-83 263
Msa1018710 AT3G62750.3 41.691 343 182 6 57 388 19 354 4.00e-82 263
Msa1018710 AT2G44470.2 38.395 349 198 4 81 412 30 378 3.09e-81 259
Msa1018710 AT5G48375.1 36.203 453 220 12 74 516 32 425 4.70e-80 258
Msa1018710 AT1G02850.3 36.881 404 210 7 85 453 31 424 1.16e-79 256
Msa1018710 AT1G61810.4 36.247 389 229 8 81 453 34 419 7.22e-78 251
Msa1018710 AT1G45191.3 40.625 320 177 5 76 386 25 340 1.71e-77 250
Msa1018710 AT1G45191.5 40.625 320 177 5 76 386 25 340 2.69e-77 249
Msa1018710 AT3G18070.4 39.432 317 177 5 81 386 31 343 2.19e-76 246
Msa1018710 AT5G26000.2 34.954 432 237 10 74 476 32 448 3.64e-76 248
Msa1018710 AT2G44450.2 38.177 351 208 4 194 537 1 349 8.31e-76 244
Msa1018710 AT1G52400.2 35.885 418 229 10 61 453 21 424 6.20e-74 242
Msa1018710 AT1G61820.3 35.657 373 215 9 187 541 4 369 1.43e-73 239
Msa1018710 AT1G60270.1 37.994 329 190 5 81 399 25 349 1.12e-72 236
Msa1018710 AT2G44460.2 37.260 365 203 8 192 537 1 358 1.06e-68 228
Msa1018710 AT3G18070.2 35.174 344 202 7 213 542 88 424 1.13e-62 212
Msa1018710 AT1G60270.2 40.230 261 145 4 146 399 6 262 1.51e-62 207
Msa1018710 AT2G44480.5 37.209 301 170 5 253 538 7 303 1.67e-61 205
Msa1018710 AT1G51490.1 39.159 309 172 8 89 388 29 330 1.45e-57 197
Msa1018710 AT3G18070.7 34.591 318 187 7 239 542 2 312 6.10e-55 188
Msa1018710 AT1G61810.2 36.496 274 157 6 81 340 34 304 3.21e-51 178
Msa1018710 AT5G16580.1 34.256 289 163 6 218 494 26 299 3.42e-47 167
Msa1018710 AT3G18070.5 35.178 253 147 5 213 454 88 334 1.65e-42 155
Msa1018710 AT3G18070.6 34.361 227 132 5 239 454 2 222 6.05e-35 131

Find 84 sgRNAs with CRISPR-Local

Find 423 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATATGTCTTACTTGGAATT+TGG 0.139650 7_1:+39147632 None:intergenic
TTTATAGATGGAACCTTAAA+AGG 0.174197 7_1:-39148281 Msa1018710:intron
TAATAAGCAGCAGTGTATTC+TGG 0.212627 7_1:-39150645 Msa1018710:intron
GTAGTAATCTTGTTTCTATT+TGG 0.243392 7_1:+39146900 None:intergenic
TGTTCGTCTTTCAATGGATT+TGG 0.245425 7_1:+39146246 None:intergenic
AAAATCTACATAACTGAAAA+TGG 0.259461 7_1:-39146393 Msa1018710:intron
TCAAACATAGCTTGGACTTC+TGG 0.264938 7_1:+39147780 None:intergenic
AACTTACTCAATTGCTGATT+TGG 0.278616 7_1:+39146188 None:intergenic
AAAGGAAGTACAGACTTTAT+TGG 0.293669 7_1:-39146960 Msa1018710:CDS
GTTCGTCTTTCAATGGATTT+GGG 0.327576 7_1:+39146247 None:intergenic
CCGTGTACAATGTTGGTAAT+TGG 0.356507 7_1:-39147755 Msa1018710:CDS
TACCAACAGACACAGCTAAA+TGG 0.374533 7_1:-39145335 Msa1018710:CDS
TATTACTCTATTCCAAGATA+TGG 0.384586 7_1:+39149267 None:intergenic
GGATGGATATTCTCATCATA+TGG 0.386896 7_1:-39145397 Msa1018710:CDS
ATTCGATGTTCGTCTTTCAA+TGG 0.409750 7_1:+39146240 None:intergenic
TGAGCAGCATCCACATCCTC+TGG 0.412953 7_1:+39147235 None:intergenic
AAGAAATTATATAATCCTTC+GGG 0.421198 7_1:+39146447 None:intergenic
TAAGAAATTATATAATCCTT+CGG 0.423754 7_1:+39146446 None:intergenic
ATCTATGTGGGAACGATGCC+TGG 0.425796 7_1:+39152705 None:intergenic
TATAGAGTCATGTGCATTAG+TGG 0.426298 7_1:+39152760 None:intergenic
GCAATTCAAGAGGGAGAAAT+CGG 0.429988 7_1:-39147301 Msa1018710:CDS
TAACCATCCCCATTTAAAAT+CGG 0.435958 7_1:+39147204 None:intergenic
AATAAGCAGCAGTGTATTCT+GGG 0.437860 7_1:-39150644 Msa1018710:intron
TTCATCAAGCTTTCCGAACC+AGG 0.444830 7_1:-39152723 Msa1018710:CDS
TGAGCACTACAAGAGATATA+AGG 0.453686 7_1:-39150598 Msa1018710:intron
AGCATCCACATCCTCTGGTT+TGG 0.456636 7_1:+39147240 None:intergenic
GAACTCCTATTCAAAACATA+TGG 0.457962 7_1:-39147837 Msa1018710:CDS
TGTGGGAACGATGCCTGGTT+CGG 0.461216 7_1:+39152710 None:intergenic
TGCTGGAACATCAGCCGCTC+AGG 0.464075 7_1:-39152672 Msa1018710:intron
CATGAAGGAGGAAGAGGGCT+TGG 0.471579 7_1:-39152548 Msa1018710:CDS
AAGACAAGAGTAATACAGAT+TGG 0.472279 7_1:-39152794 Msa1018710:CDS
GATGGATATTCTCATCATAT+GGG 0.474847 7_1:-39145396 Msa1018710:CDS
CATTTATTGTTTCAAATCGC+GGG 0.498063 7_1:+39145296 None:intergenic
CAGTTCCAAACCAGAGGATG+TGG 0.500390 7_1:-39147245 Msa1018710:CDS
AAATGCTCAAACCTTGTGCC+TGG 0.500647 7_1:+39153414 None:intergenic
AAGCCACAAGATAGCAAGAA+TGG 0.509190 7_1:+39153460 None:intergenic
ACACGGATTCAAACATAGCT+TGG 0.510241 7_1:+39147772 None:intergenic
AGGTGCAACATGGTCACAAA+AGG 0.513788 7_1:+39148071 None:intergenic
TTCTCCATCTAAGAAAACTC+TGG 0.516160 7_1:+39153518 None:intergenic
AATAGAAACAAGATTACTAC+TGG 0.523073 7_1:-39146897 Msa1018710:CDS
AGAGGGCTTGGTATATTTGA+CGG 0.523788 7_1:-39152536 Msa1018710:intron
GGATCTCATGAAGGAGGAAG+AGG 0.525860 7_1:-39152554 Msa1018710:CDS
TCCTCTGGTTTGGAACTGTA+AGG 0.526227 7_1:+39147250 None:intergenic
AAACCATTCTTGCTATCTTG+TGG 0.526724 7_1:-39153463 Msa1018710:CDS
CCAATTACCAACATTGTACA+CGG 0.528528 7_1:+39147755 None:intergenic
TACCATTTAGCTGTGTCTGT+TGG 0.531462 7_1:+39145333 None:intergenic
ATGTTCGTGGATACTTTGCA+TGG 0.535951 7_1:-39145446 Msa1018710:CDS
AACATTCGGGTCCAGGCACA+AGG 0.536095 7_1:-39153425 Msa1018710:intron
AAAGGAGGTATAAACAAAGA+AGG 0.536911 7_1:-39148263 Msa1018710:CDS
GATGCCTTGGCTATTTCAGA+AGG 0.539068 7_1:-39146864 Msa1018710:intron
CGTTGAGATGGTTTCTGTGA+GGG 0.540918 7_1:+39153071 None:intergenic
TTGTGATTGTAGATTGAAGG+TGG 0.543231 7_1:-39152575 Msa1018710:intron
AATGAGAAAGAAATGTTGAA+AGG 0.550913 7_1:-39146978 Msa1018710:CDS
ACTGTAGATATTAATGCAGA+AGG 0.559232 7_1:-39146615 Msa1018710:intron
AAAATAATGAGAAAGCTAGT+GGG 0.562146 7_1:-39147026 Msa1018710:CDS
ACATTTATTGTTTCAAATCG+CGG 0.564724 7_1:+39145295 None:intergenic
GTAGATAAATCACGTTGAGA+TGG 0.565758 7_1:+39153059 None:intergenic
ATTGAAGGTGGATCTCATGA+AGG 0.567066 7_1:-39152563 Msa1018710:CDS
ATGGTGATCGAGTGAAACAT+TGG 0.575940 7_1:-39147818 Msa1018710:CDS
AAGCTATAGCATGGGAGATG+AGG 0.578271 7_1:+39147670 None:intergenic
AGAGTAATACAGATTGGAGA+AGG 0.581797 7_1:-39152788 Msa1018710:CDS
AGTGATGGCGTAAATGTTCG+TGG 0.587594 7_1:-39145459 Msa1018710:CDS
GGATAATCTCCGTTGAACAA+TGG 0.588982 7_1:+39147050 None:intergenic
ATAACTTTGAAGCTATAGCA+TGG 0.591805 7_1:+39147661 None:intergenic
ACGTGATTTATCTACTCCAC+AGG 0.594966 7_1:-39153051 Msa1018710:intron
TTTACCTTCTGAAATAGCCA+AGG 0.595047 7_1:+39146860 None:intergenic
TAACTTTGAAGCTATAGCAT+GGG 0.595255 7_1:+39147662 None:intergenic
TTTATATAGGCAATTCAAGA+GGG 0.596111 7_1:-39147310 Msa1018710:intron
TTGTGCCTGGACCCGAATGT+TGG 0.603731 7_1:+39153427 None:intergenic
ATAGATGGAACCTTAAAAGG+AGG 0.607361 7_1:-39148278 Msa1018710:intron
TTTGAATCCGTGTACAATGT+TGG 0.616775 7_1:-39147762 Msa1018710:CDS
GGTAGATATGTCTATCCCGA+AGG 0.618017 7_1:-39146462 Msa1018710:CDS
CAATGTTGGTAATTGGTCAA+CGG 0.620194 7_1:-39147748 Msa1018710:CDS
GAAGAGCTAATGGATAGTCA+AGG 0.627428 7_1:+39148051 None:intergenic
TGTTCGTGGATACTTTGCAT+GGG 0.627585 7_1:-39145445 Msa1018710:CDS
TCCTTACAGTTCCAAACCAG+AGG 0.628128 7_1:-39147251 Msa1018710:CDS
GATCTCATGAAGGAGGAAGA+GGG 0.629006 7_1:-39152553 Msa1018710:CDS
AAATAATGAGAAAGCTAGTG+GGG 0.638767 7_1:-39147025 Msa1018710:CDS
TGGATAGTCAAGGTGCAACA+TGG 0.642084 7_1:+39148061 None:intergenic
ATGGATATTCTCATCATATG+GGG 0.646176 7_1:-39145395 Msa1018710:CDS
GAAGGTGGATCTCATGAAGG+AGG 0.648268 7_1:-39152560 Msa1018710:CDS
ATCAACGAGTTACTCGACAA+TGG 0.652625 7_1:-39148218 Msa1018710:intron
TCTTGGAATAGAGTAATACC+AGG 0.665387 7_1:-39149262 Msa1018710:intron
ACGTTGAGATGGTTTCTGTG+AGG 0.690914 7_1:+39153070 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATATATATATATATATA+TGG - chr7_1:39146486-39146505 Msa1018710:intron 0.0%
!! ATATATATATATATATATAT+GGG - chr7_1:39146487-39146506 Msa1018710:intron 0.0%
!! TATATATATATATATATATA+GGG + chr7_1:39146486-39146505 None:intergenic 0.0%
!! ATATATATATATATATATAT+AGG + chr7_1:39146487-39146506 None:intergenic 0.0%
!! AATATATAATTTACTTTACA+TGG + chr7_1:39145513-39145532 None:intergenic 10.0%
!!! CATATACTTTTTTTTTTAAA+TGG - chr7_1:39147318-39147337 Msa1018710:intron 10.0%
!!! GTATTGATAAATATTATTAT+AGG - chr7_1:39148314-39148333 Msa1018710:intron 10.0%
!!! AACTATAATATTTTTTTTAG+AGG + chr7_1:39148371-39148390 None:intergenic 10.0%
!!! TCTTTTCTTTTATTAAATTA+TGG - chr7_1:39148861-39148880 Msa1018710:intron 10.0%
!! TTATTTAATAATTCAAAATC+GGG + chr7_1:39149028-39149047 None:intergenic 10.0%
!!! AATTTAAGATTTTTGTTTTA+TGG + chr7_1:39149102-39149121 None:intergenic 10.0%
!! AAGTAAAAAAGTTTATTTAA+GGG + chr7_1:39149390-39149409 None:intergenic 10.0%
!! TAAGTAAAAAAGTTTATTTA+AGG + chr7_1:39149391-39149410 None:intergenic 10.0%
!! AAAAGGAATTTATTAATTAA+TGG - chr7_1:39149636-39149655 Msa1018710:intron 10.0%
!!! TTTTTTTTTTTACATAAAGT+TGG - chr7_1:39149824-39149843 Msa1018710:intron 10.0%
!!! TTTATGTAAAAATCAATTTT+AGG - chr7_1:39150944-39150963 Msa1018710:intron 10.0%
!!! TTAAAAATAACTTTTTACTT+TGG - chr7_1:39151256-39151275 Msa1018710:intron 10.0%
!!! TTCTACTTTTTTTTTTTTTT+TGG - chr7_1:39152098-39152117 Msa1018710:intron 10.0%
!!! AACTATTAACAATATTTTTT+TGG - chr7_1:39152803-39152822 Msa1018710:intron 10.0%
!! AAAATATACATAATATCAAA+AGG - chr7_1:39153237-39153256 Msa1018710:intron 10.0%
!!! CATTTACTTCTTTTATATTT+TGG - chr7_1:39145429-39145448 Msa1018710:CDS 15.0%
!!! TCAATGTTACTTAATTATAA+TGG + chr7_1:39145610-39145629 None:intergenic 15.0%
!!! TGTATTTTTTTTTTTTGTGT+TGG - chr7_1:39147347-39147366 Msa1018710:intron 15.0%
!!! GTATTTTTTTTTTTTGTGTT+GGG - chr7_1:39147348-39147367 Msa1018710:intron 15.0%
!!! TATTTTTTTTTTTTGTGTTG+GGG - chr7_1:39147349-39147368 Msa1018710:intron 15.0%
!!! AAATATGTAGGTTTTTTTTA+GGG - chr7_1:39147521-39147540 Msa1018710:intron 15.0%
!!! TAATTTTCTCATTCTAAAAA+GGG + chr7_1:39147722-39147741 None:intergenic 15.0%
!! AAACAAAACAAGAAATTATT+GGG + chr7_1:39148154-39148173 None:intergenic 15.0%
!! AAAACAAAACAAGAAATTAT+TGG + chr7_1:39148155-39148174 None:intergenic 15.0%
!!! ATATTATTATAGGTTTTTTG+TGG - chr7_1:39148324-39148343 Msa1018710:intron 15.0%
!!! TATTATTATAGGTTTTTTGT+GGG - chr7_1:39148325-39148344 Msa1018710:intron 15.0%
!! GAAGACATAAAAAATATTAT+AGG - chr7_1:39148424-39148443 Msa1018710:intron 15.0%
!! CAGATCATAAAAAATATTAT+AGG - chr7_1:39148462-39148481 Msa1018710:intron 15.0%
!! TATTTAATAATTCAAAATCG+GGG + chr7_1:39149027-39149046 None:intergenic 15.0%
!! TGATTTATTTACTAGATAAT+GGG + chr7_1:39149203-39149222 None:intergenic 15.0%
!! TTGATTTATTTACTAGATAA+TGG + chr7_1:39149204-39149223 None:intergenic 15.0%
!! AAAAATATCAACAAGATAAT+GGG + chr7_1:39149333-39149352 None:intergenic 15.0%
!! AGTAAAAAAGTTTATTTAAG+GGG + chr7_1:39149389-39149408 None:intergenic 15.0%
!!! TTTATTTGTTTTGATTTGAA+TGG - chr7_1:39149478-39149497 Msa1018710:intron 15.0%
!! ATGAAAGAAAAAAAAACTTA+AGG - chr7_1:39150303-39150322 Msa1018710:intron 15.0%
!! ATAATTATATGGTTATTCAA+AGG - chr7_1:39150358-39150377 Msa1018710:intron 15.0%
!! CGAATATAAAGATAAATATA+AGG + chr7_1:39150515-39150534 None:intergenic 15.0%
!!! TTCCATTAAACTTTTTATAT+AGG - chr7_1:39151502-39151521 Msa1018710:intron 15.0%
!! ATAAAATAATTGGTATACAA+AGG - chr7_1:39152021-39152040 Msa1018710:intron 15.0%
!!! AATTTGATTTGTAGAATTTA+TGG + chr7_1:39152080-39152099 None:intergenic 15.0%
!! TAAGAAATTATATAATCCTT+CGG + chr7_1:39152382-39152401 None:intergenic 15.0%
!! AAAACAATATTATACAAGTT+TGG + chr7_1:39152746-39152765 None:intergenic 15.0%
!!! TATTAAATATCTGTATCTTT+TGG + chr7_1:39153325-39153344 None:intergenic 15.0%
!!! ATAAATGTTCTTTTTGTAAT+TGG - chr7_1:39153545-39153564 Msa1018710:five_prime_UTR 15.0%
!! ACATTGATGTTTCATTAATA+TGG - chr7_1:39145623-39145642 Msa1018710:intron 20.0%
!! TATTATAATGTTACTATTGC+AGG - chr7_1:39145718-39145737 Msa1018710:intron 20.0%
!! TCAAACAAGATTGATATATT+TGG - chr7_1:39145922-39145941 Msa1018710:intron 20.0%
!! TAAAACAAAGTCATATAAGA+AGG + chr7_1:39145988-39146007 None:intergenic 20.0%
!!! TTTCAACACACTTTTTTTAT+TGG - chr7_1:39146357-39146376 Msa1018710:intron 20.0%
!!! TTATTTGAAATGAAAACTGA+AGG + chr7_1:39146866-39146885 None:intergenic 20.0%
!! TCTATAATAAAGATTGTTGT+TGG - chr7_1:39147095-39147114 Msa1018710:intron 20.0%
!!! ATATATATCCTTTTTCTTAC+CGG - chr7_1:39147287-39147306 Msa1018710:CDS 20.0%
!!! TATTATTTTTGACAAATGCT+TGG - chr7_1:39147468-39147487 Msa1018710:intron 20.0%
!!! GAAATATGTAGGTTTTTTTT+AGG - chr7_1:39147520-39147539 Msa1018710:intron 20.0%
!!! AATATGTAGGTTTTTTTTAG+GGG - chr7_1:39147522-39147541 Msa1018710:intron 20.0%
!!! CTAATTTTCTCATTCTAAAA+AGG + chr7_1:39147723-39147742 None:intergenic 20.0%
!!! TTTTTATTGGACAAAAACAA+TGG + chr7_1:39148017-39148036 None:intergenic 20.0%
!!! TACCTTTCTTATCTTTTTAT+TGG + chr7_1:39148030-39148049 None:intergenic 20.0%
!!! AAGTTAGATATTTTAGAGTT+TGG - chr7_1:39148292-39148311 Msa1018710:intron 20.0%
!!! TTTTATGTCTTCTTTGTTAT+TGG + chr7_1:39148416-39148435 None:intergenic 20.0%
!! AAAAATGAGATTGTTAAAAG+AGG - chr7_1:39148747-39148766 Msa1018710:intron 20.0%
!! AAAATGAGATTGTTAAAAGA+GGG - chr7_1:39148748-39148767 Msa1018710:intron 20.0%
!!! AAGATTTTTGTTTTATGGAA+CGG + chr7_1:39149097-39149116 None:intergenic 20.0%
!!! TCACCATAATTTAAGATAAT+GGG + chr7_1:39149238-39149257 None:intergenic 20.0%
!!! ATCACCATAATTTAAGATAA+TGG + chr7_1:39149239-39149258 None:intergenic 20.0%
!! CTTAAATTATGGTGATTTAT+TGG - chr7_1:39149243-39149262 Msa1018710:intron 20.0%
!!! TTTTATCAAAAACACTACTA+GGG + chr7_1:39149300-39149319 None:intergenic 20.0%
!! GAAAAATATCAACAAGATAA+TGG + chr7_1:39149334-39149353 None:intergenic 20.0%
!!! GATATTTTTCTTTGTTGTAA+TGG - chr7_1:39149344-39149363 Msa1018710:intron 20.0%
!! GTAAAAAAGTTTATTTAAGG+GGG + chr7_1:39149388-39149407 None:intergenic 20.0%
!! ATCTACTTATAGTTTACAAA+AGG - chr7_1:39149619-39149638 Msa1018710:intron 20.0%
!!! TTTTATTTCTGAAAATGAGT+AGG - chr7_1:39149732-39149751 Msa1018710:intron 20.0%
!!! TTCTTTTTTCTTCTATCATT+GGG + chr7_1:39149788-39149807 None:intergenic 20.0%
!!! ATTCTTTTTTCTTCTATCAT+TGG + chr7_1:39149789-39149808 None:intergenic 20.0%
!! ATAGAAGAAAAAAGAATTGA+TGG - chr7_1:39149792-39149811 Msa1018710:intron 20.0%
!! TTTAATATACTAGTATGTCT+TGG - chr7_1:39149890-39149909 Msa1018710:intron 20.0%
!!! TTACTCAAATAAAGTTCTAA+TGG - chr7_1:39150239-39150258 Msa1018710:intron 20.0%
!! ATGTTTAGGGAATAATTATA+TGG - chr7_1:39150347-39150366 Msa1018710:intron 20.0%
!! AGCATATGAAATATAGTTTA+AGG + chr7_1:39150444-39150463 None:intergenic 20.0%
!! AGGATATATTCAAACATTAT+TGG + chr7_1:39150470-39150489 None:intergenic 20.0%
!! CTTATTAAATATTGCAAGAA+AGG + chr7_1:39150490-39150509 None:intergenic 20.0%
!! AGTTATTGCAATGAATATTT+GGG + chr7_1:39150647-39150666 None:intergenic 20.0%
!! TAGTTATTGCAATGAATATT+TGG + chr7_1:39150648-39150667 None:intergenic 20.0%
!! TTTCAAAAATATGTCTTACT+TGG + chr7_1:39151203-39151222 None:intergenic 20.0%
!!! ATGTTACATATATACTCTTT+TGG - chr7_1:39151227-39151246 Msa1018710:intron 20.0%
!!! AAAATAACTTTTTACTTTGG+AGG - chr7_1:39151259-39151278 Msa1018710:intron 20.0%
!!! AAAGCAACTTTTTACTTTTT+AGG + chr7_1:39151299-39151318 None:intergenic 20.0%
!! TTATCAACATTAATCAAACT+AGG - chr7_1:39151439-39151458 Msa1018710:intron 20.0%
!! TCAAACTAGGTTATAAAATA+AGG - chr7_1:39151452-39151471 Msa1018710:intron 20.0%
!! TGCCTATATAAAAAGTTTAA+TGG + chr7_1:39151507-39151526 None:intergenic 20.0%
!!! AAAGATTAACCGATTTTAAA+TGG - chr7_1:39151612-39151631 Msa1018710:intron 20.0%
!!! AAGATTAACCGATTTTAAAT+GGG - chr7_1:39151613-39151632 Msa1018710:intron 20.0%
!!! TTCTCATTTTTAGTGAATTT+GGG + chr7_1:39151835-39151854 None:intergenic 20.0%
!!! TTTCTCATTTTTAGTGAATT+TGG + chr7_1:39151836-39151855 None:intergenic 20.0%
!! TTCTACTTATTTGATATGTA+AGG - chr7_1:39152130-39152149 Msa1018710:intron 20.0%
!! TCTACTTATTTGATATGTAA+GGG - chr7_1:39152131-39152150 Msa1018710:intron 20.0%
!!! AGAAGAATGATATTTGTTAA+AGG - chr7_1:39152276-39152295 Msa1018710:intron 20.0%
!!! GAAGAATGATATTTGTTAAA+GGG - chr7_1:39152277-39152296 Msa1018710:intron 20.0%
!! AAGAAATTATATAATCCTTC+GGG + chr7_1:39152381-39152400 None:intergenic 20.0%
!! AAAATCTACATAACTGAAAA+TGG - chr7_1:39152432-39152451 Msa1018710:intron 20.0%
!!! AAAAATATTGATCTCTTTTG+TGG + chr7_1:39152515-39152534 None:intergenic 20.0%
!!! TAATTCCTTTTCAAATTCTA+CGG + chr7_1:39152676-39152695 None:intergenic 20.0%
!!! TATCTAATGTTACTTTTCTA+AGG - chr7_1:39152694-39152713 Msa1018710:CDS 20.0%
!! AGACACACTATAAAATAAAT+AGG + chr7_1:39152720-39152739 None:intergenic 20.0%
!! TATCTCTATCAAAAAATATG+TGG + chr7_1:39152920-39152939 None:intergenic 20.0%
!!! TGTACTTGATTTTTTTTTTC+CGG + chr7_1:39152996-39153015 None:intergenic 20.0%
!! TAATCTCTTTCTAATAATCA+TGG - chr7_1:39153146-39153165 Msa1018710:intron 20.0%
!!! ATTTGATACGTTTGATTTTA+AGG - chr7_1:39153407-39153426 Msa1018710:intron 20.0%
!!! TATCATGTCAATTTTAATGA+TGG - chr7_1:39153456-39153475 Msa1018710:CDS 20.0%
!!! TTGTTTTGTTTTCCAACATT+CGG - chr7_1:39145386-39145405 Msa1018710:CDS 25.0%
!!! CTTTTTTAATCAAGCAAACA+TGG - chr7_1:39145484-39145503 Msa1018710:intron 25.0%
! CAATCACAAAAACTTACTAT+AGG + chr7_1:39146200-39146219 None:intergenic 25.0%
!! TTTTTGTGATTGTAGATTGA+AGG - chr7_1:39146247-39146266 Msa1018710:CDS 25.0%
! GTCATTGAAATAGATAATCA+TGG - chr7_1:39147166-39147185 Msa1018710:intron 25.0%
! TGCATAATATATACAAGGTT+CGG + chr7_1:39147383-39147402 None:intergenic 25.0%
! GACAATGCATAATATATACA+AGG + chr7_1:39147388-39147407 None:intergenic 25.0%
!! TTTTTCATCTCGAAATATGT+AGG - chr7_1:39147509-39147528 Msa1018710:intron 25.0%
!!! GTAGTAATTGGTTTTTAGAA+GGG - chr7_1:39147554-39147573 Msa1018710:intron 25.0%
! TCTAAATATCATCACATGTA+TGG - chr7_1:39147861-39147880 Msa1018710:CDS 25.0%
! GTCCAATAAAAAGATAAGAA+AGG - chr7_1:39148025-39148044 Msa1018710:CDS 25.0%
! TTACAAGAGTTGTACAAAAT+TGG - chr7_1:39148054-39148073 Msa1018710:CDS 25.0%
! ATTGTTAAAAGAGGGAATTA+TGG - chr7_1:39148756-39148775 Msa1018710:intron 25.0%
! TCTCCCATTATCTTAAATTA+TGG - chr7_1:39149232-39149251 Msa1018710:intron 25.0%
!! ATGGTGATTTATTGGTATTT+TGG - chr7_1:39149251-39149270 Msa1018710:intron 25.0%
!! CTTTTATCAAAAACACTACT+AGG + chr7_1:39149301-39149320 None:intergenic 25.0%
! GTACAAAAATTGAAGATTCT+TGG - chr7_1:39149515-39149534 Msa1018710:intron 25.0%
! TATTACTCTATTCCAAGATA+TGG + chr7_1:39149561-39149580 None:intergenic 25.0%
!!! AGTACATTCATTAGTTTTTG+TGG - chr7_1:39149667-39149686 Msa1018710:intron 25.0%
!!! TTTTACATAAAGTTGGTTGA+TGG - chr7_1:39149831-39149850 Msa1018710:intron 25.0%
! AGAGTCTTAGTATATATGAT+TGG - chr7_1:39149917-39149936 Msa1018710:intron 25.0%
!! GAGAAGTTTTACAACAATTA+TGG + chr7_1:39150018-39150037 None:intergenic 25.0%
!!! GGGATGTCATATTTTATTTT+CGG - chr7_1:39150055-39150074 Msa1018710:intron 25.0%
!! CAAATAAAGTTCTAATGGAA+AGG - chr7_1:39150244-39150263 Msa1018710:intron 25.0%
! TTGAACCAAACAATATGTTT+AGG - chr7_1:39150333-39150352 Msa1018710:intron 25.0%
! TGAACCAAACAATATGTTTA+GGG - chr7_1:39150334-39150353 Msa1018710:intron 25.0%
! TATTCCCTAAACATATTGTT+TGG + chr7_1:39150341-39150360 None:intergenic 25.0%
! ATGTGATTTGAGTAATGATT+TGG + chr7_1:39150401-39150420 None:intergenic 25.0%
! TAAGGTTCCATCTATAAAAT+TGG + chr7_1:39150542-39150561 None:intergenic 25.0%
! TTTATAGATGGAACCTTAAA+AGG - chr7_1:39150544-39150563 Msa1018710:intron 25.0%
!! TTTGTTTATACCTCCTTTTA+AGG + chr7_1:39150560-39150579 None:intergenic 25.0%
!!! AACTTTTTTTGAAGAGCTAA+TGG + chr7_1:39150787-39150806 None:intergenic 25.0%
!! TTAGCTCTTCAAAAAAAGTT+TGG - chr7_1:39150787-39150806 Msa1018710:intron 25.0%
! ATCCAGAAGAGATTATATAT+AGG + chr7_1:39150845-39150864 None:intergenic 25.0%
!!! CAATTTTAGGAAACATTTCA+AGG - chr7_1:39150957-39150976 Msa1018710:intron 25.0%
!!! CTGTACATATTTTAGTAGTT+TGG + chr7_1:39151110-39151129 None:intergenic 25.0%
! AATATGTCTTACTTGGAATT+TGG + chr7_1:39151196-39151215 None:intergenic 25.0%
! TATTACTATCACTATTATCG+AGG + chr7_1:39151371-39151390 None:intergenic 25.0%
!! TTTTATATAGGCAATTCAAG+AGG - chr7_1:39151514-39151533 Msa1018710:intron 25.0%
! TTTATATAGGCAATTCAAGA+GGG - chr7_1:39151515-39151534 Msa1018710:intron 25.0%
!!! AGATTAACCGATTTTAAATG+GGG - chr7_1:39151614-39151633 Msa1018710:intron 25.0%
! AATAAAACACTAAATGTGAG+TGG + chr7_1:39151670-39151689 None:intergenic 25.0%
!!! ACTAGCTTTCTCATTATTTT+TGG + chr7_1:39151799-39151818 None:intergenic 25.0%
! AAAAATAATGAGAAAGCTAG+TGG - chr7_1:39151798-39151817 Msa1018710:intron 25.0%
! AAAATAATGAGAAAGCTAGT+GGG - chr7_1:39151799-39151818 Msa1018710:intron 25.0%
! AATGAGAAAGAAATGTTGAA+AGG - chr7_1:39151847-39151866 Msa1018710:intron 25.0%
!!! GTAGTAATCTTGTTTCTATT+TGG + chr7_1:39151928-39151947 None:intergenic 25.0%
! AATAGAAACAAGATTACTAC+TGG - chr7_1:39151928-39151947 Msa1018710:intron 25.0%
!! GTTCACTATTGATATTTTGT+AGG - chr7_1:39152329-39152348 Msa1018710:intron 25.0%
!! GATATTTTGTAGGATCAATA+TGG - chr7_1:39152339-39152358 Msa1018710:intron 25.0%
! ATACGCAAGAATCAAATTAA+AGG + chr7_1:39152855-39152874 None:intergenic 25.0%
!!! TTTAATTTGATTCTTGCGTA+TGG - chr7_1:39152854-39152873 Msa1018710:intron 25.0%
! CATACATATAACATGATAAC+CGG - chr7_1:39152974-39152993 Msa1018710:intron 25.0%
!! AAGTGAGCAATACATTTTAT+GGG + chr7_1:39153178-39153197 None:intergenic 25.0%
!! AAAGTGAGCAATACATTTTA+TGG + chr7_1:39153179-39153198 None:intergenic 25.0%
! ACATTTATTGTTTCAAATCG+CGG + chr7_1:39153533-39153552 None:intergenic 25.0%
!!! TGTTTTGTTTTCCAACATTC+GGG - chr7_1:39145387-39145406 Msa1018710:CDS 30.0%
AAGATTGATTAGTACTCTTC+TGG - chr7_1:39145877-39145896 Msa1018710:intron 30.0%
AAGACAAGAGTAATACAGAT+TGG - chr7_1:39146031-39146050 Msa1018710:intron 30.0%
! TTCCCACATAGATTTTTGTT+TGG - chr7_1:39146130-39146149 Msa1018710:intron 30.0%
CACCAAACAAAAATCTATGT+GGG + chr7_1:39146135-39146154 None:intergenic 30.0%
TCAGGTACATGCTAAAAATT+TGG - chr7_1:39146171-39146190 Msa1018710:intron 30.0%
! TTTTGTGATTGTAGATCGAA+TGG - chr7_1:39146209-39146228 Msa1018710:CDS 30.0%
!! ACACCAACTTACTTTTATGA+AGG - chr7_1:39146611-39146630 Msa1018710:CDS 30.0%
ACACCTTCATAAAAGTAAGT+TGG + chr7_1:39146617-39146636 None:intergenic 30.0%
! ATAACTTCTTTCAGCTCTTT+TGG - chr7_1:39146814-39146833 Msa1018710:intron 30.0%
! TAACTTCTTTCAGCTCTTTT+GGG - chr7_1:39146815-39146834 Msa1018710:intron 30.0%
! AAAAGTATATGCATACCTTC+CGG + chr7_1:39147309-39147328 None:intergenic 30.0%
!! TATTTTTGACAAATGCTTGG+TGG - chr7_1:39147471-39147490 Msa1018710:intron 30.0%
!!! TTTTTTTTAGGGGTTGGAAT+AGG - chr7_1:39147532-39147551 Msa1018710:intron 30.0%
!!! GGTAGTAATTGGTTTTTAGA+AGG - chr7_1:39147553-39147572 Msa1018710:intron 30.0%
GAATGAGAAAATTAGAGTAG+CGG - chr7_1:39147728-39147747 Msa1018710:CDS 30.0%
! TCTTCTTTGTTACTTAGACA+TGG + chr7_1:39148591-39148610 None:intergenic 30.0%
ATGATGGTTTAAGAAGAGAA+TGG - chr7_1:39148788-39148807 Msa1018710:intron 30.0%
ATGATGGTTTAAGAAGAGAA+TGG - chr7_1:39148788-39148807 Msa1018710:intron 30.0%
! CTTACAGATTTTCCATATCT+TGG - chr7_1:39149546-39149565 Msa1018710:intron 30.0%
! GTTAGTTCAAAAGTTTTACC+TGG + chr7_1:39149584-39149603 None:intergenic 30.0%
!!! CATTCATTAGTTTTTGTGGA+AGG - chr7_1:39149671-39149690 Msa1018710:intron 30.0%
! TTCTGAAAATGAGTAGGTTT+AGG - chr7_1:39149738-39149757 Msa1018710:intron 30.0%
! TCTCAATTTTCATTGTAGTG+TGG - chr7_1:39150034-39150053 Msa1018710:intron 30.0%
! CTCAATTTTCATTGTAGTGT+GGG - chr7_1:39150035-39150054 Msa1018710:intron 30.0%
GAACCCTAGATCTATAATTT+GGG - chr7_1:39150138-39150157 Msa1018710:intron 30.0%
AACCCTAGATCTATAATTTG+GGG - chr7_1:39150139-39150158 Msa1018710:intron 30.0%
TTCCCCAAATTATAGATCTA+GGG + chr7_1:39150144-39150163 None:intergenic 30.0%
CACCTAATAAGCATAAATGT+AGG - chr7_1:39150192-39150211 Msa1018710:intron 30.0%
GTCCTACATTTATGCTTATT+AGG + chr7_1:39150197-39150216 None:intergenic 30.0%
! ACATATTGTTTGGTTCAACT+CGG + chr7_1:39150331-39150350 None:intergenic 30.0%
! TCGACAACCAATTTTATAGA+TGG - chr7_1:39150532-39150551 Msa1018710:intron 30.0%
! AAAGGAGGTATAAACAAAGA+AGG - chr7_1:39150562-39150581 Msa1018710:intron 30.0%
CTCCTATATATAATCTCTTC+TGG - chr7_1:39150840-39150859 Msa1018710:intron 30.0%
GAACTCCTATTCAAAACATA+TGG - chr7_1:39150988-39151007 Msa1018710:intron 30.0%
!! GATCACCATATGTTTTGAAT+AGG + chr7_1:39150996-39151015 None:intergenic 30.0%
!! TAACTTTGAAGCTATAGCAT+GGG + chr7_1:39151166-39151185 None:intergenic 30.0%
!! ATAACTTTGAAGCTATAGCA+TGG + chr7_1:39151167-39151186 None:intergenic 30.0%
!!! AAGTTGCTTTTAATTGAGAC+CGG - chr7_1:39151309-39151328 Msa1018710:intron 30.0%
! TAACCATCCCCATTTAAAAT+CGG + chr7_1:39151624-39151643 None:intergenic 30.0%
AAATAATGAGAAAGCTAGTG+GGG - chr7_1:39151800-39151819 Msa1018710:intron 30.0%
! AAAGGAAGTACAGACTTTAT+TGG - chr7_1:39151865-39151884 Msa1018710:intron 30.0%
ACTGTAGATATTAATGCAGA+AGG - chr7_1:39152210-39152229 Msa1018710:intron 30.0%
! ATTTTGTAGGATCAATATGG+TGG - chr7_1:39152342-39152361 Msa1018710:intron 30.0%
TCTACATAACTGAAAATGGT+TGG - chr7_1:39152436-39152455 Msa1018710:intron 30.0%
! AACTTACTCAATTGCTGATT+TGG + chr7_1:39152640-39152659 None:intergenic 30.0%
CTCTATCAAAAAATATGTGG+AGG + chr7_1:39152917-39152936 None:intergenic 30.0%
AAATGTATTGCTCACTTTGA+AGG - chr7_1:39153181-39153200 Msa1018710:intron 30.0%
! TATTTCTACATTGACAGTGA+TGG - chr7_1:39153351-39153370 Msa1018710:intron 30.0%
!! GATACGTTTGATTTTAAGGA+TGG - chr7_1:39153411-39153430 Msa1018710:intron 30.0%
GATGGATATTCTCATCATAT+GGG - chr7_1:39153429-39153448 Msa1018710:CDS 30.0%
ATGGATATTCTCATCATATG+GGG - chr7_1:39153430-39153449 Msa1018710:CDS 30.0%
CATTTATTGTTTCAAATCGC+GGG + chr7_1:39153532-39153551 None:intergenic 30.0%
! ACTTCCAGAGTTTTCTTAGA+TGG - chr7_1:39145303-39145322 Msa1018710:CDS 35.0%
TTCTCCATCTAAGAAAACTC+TGG + chr7_1:39145310-39145329 None:intergenic 35.0%
! AAACCATTCTTGCTATCTTG+TGG - chr7_1:39145362-39145381 Msa1018710:CDS 35.0%
GTAGATAAATCACGTTGAGA+TGG + chr7_1:39145769-39145788 None:intergenic 35.0%
CAATGACTAATAACTACCTG+TGG + chr7_1:39145793-39145812 None:intergenic 35.0%
GTAGTTATTAGTCATTGCCA+TGG - chr7_1:39145796-39145815 Msa1018710:intron 35.0%
ACTCAATATCATTGTGCCTA+TGG + chr7_1:39145828-39145847 None:intergenic 35.0%
AGAGTAATACAGATTGGAGA+AGG - chr7_1:39146037-39146056 Msa1018710:intron 35.0%
TATAGAGTCATGTGCATTAG+TGG + chr7_1:39146068-39146087 None:intergenic 35.0%
GCACCAAACAAAAATCTATG+TGG + chr7_1:39146136-39146155 None:intergenic 35.0%
!!! CATAGATTTTTGTTTGGTGC+TGG - chr7_1:39146136-39146155 Msa1018710:intron 35.0%
!!! ATTTTTAGCATGTACCTGAG+CGG + chr7_1:39146170-39146189 None:intergenic 35.0%
GGTACATGCTAAAAATTTGG+AGG - chr7_1:39146174-39146193 Msa1018710:intron 35.0%
TTGTGATTGTAGATTGAAGG+TGG - chr7_1:39146250-39146269 Msa1018710:CDS 35.0%
ATGTTGGTCCCATCTAAATT+TGG - chr7_1:39146400-39146419 Msa1018710:CDS 35.0%
CTAAAAGACACCTTCACAAA+AGG + chr7_1:39146562-39146581 None:intergenic 35.0%
! ATATCCTTTTTCTTACCGGA+AGG - chr7_1:39147291-39147310 Msa1018710:CDS 35.0%
!!! TGTAGGTTTTTTTTAGGGGT+TGG - chr7_1:39147526-39147545 Msa1018710:intron 35.0%
!! TTTTTAGAAGGGTTCCACTT+TGG - chr7_1:39147565-39147584 Msa1018710:intron 35.0%
ATACTTCAGTGACTTAGAGA+TGG + chr7_1:39147697-39147716 None:intergenic 35.0%
ATCAAGAGAGAGAAGAAATG+TGG + chr7_1:39147763-39147782 None:intergenic 35.0%
TAAGACACAAAAAAGGAGAG+AGG + chr7_1:39147790-39147809 None:intergenic 35.0%
!!! TCTCCTTTTTTGTGTCTTAG+AGG - chr7_1:39147791-39147810 Msa1018710:CDS 35.0%
!!! CTCCTTTTTTGTGTCTTAGA+GGG - chr7_1:39147792-39147811 Msa1018710:CDS 35.0%
CCTCAATATTGATCTTGCAT+GGG + chr7_1:39147831-39147850 None:intergenic 35.0%
CCATGCAAGATCAATATTGA+GGG - chr7_1:39147829-39147848 Msa1018710:CDS 35.0%
CATGCAAGATCAATATTGAG+GGG - chr7_1:39147830-39147849 Msa1018710:CDS 35.0%
AAGATCAATATTGAGGGGAT+GGG - chr7_1:39147835-39147854 Msa1018710:CDS 35.0%
TAATAAGCAGCAGTGTATTC+TGG - chr7_1:39148180-39148199 Msa1018710:intron 35.0%
AATAAGCAGCAGTGTATTCT+GGG - chr7_1:39148181-39148200 Msa1018710:intron 35.0%
TGAGCACTACAAGAGATATA+AGG - chr7_1:39148227-39148246 Msa1018710:CDS 35.0%
GTATGTATGTGTGTGTGTAT+TGG + chr7_1:39148522-39148541 None:intergenic 35.0%
AGATCAGAGATTTAGCAAAG+AGG + chr7_1:39148674-39148693 None:intergenic 35.0%
! GTTTATTTAAGGGGGTACAA+GGG + chr7_1:39149380-39149399 None:intergenic 35.0%
! AGTTTATTTAAGGGGGTACA+AGG + chr7_1:39149381-39149400 None:intergenic 35.0%
TCTTGGAATAGAGTAATACC+AGG - chr7_1:39149563-39149582 Msa1018710:intron 35.0%
GGAACCCTAGATCTATAATT+TGG - chr7_1:39150137-39150156 Msa1018710:intron 35.0%
CTTCCCCAAATTATAGATCT+AGG + chr7_1:39150145-39150164 None:intergenic 35.0%
ATAGATGGAACCTTAAAAGG+AGG - chr7_1:39150547-39150566 Msa1018710:intron 35.0%
TCAATACCTACACAGTCAAA+TGG + chr7_1:39150733-39150752 None:intergenic 35.0%
GCTCTTCAAAAAAAGTTTGG+TGG - chr7_1:39150790-39150809 Msa1018710:intron 35.0%
TTTGAATCCGTGTACAATGT+TGG - chr7_1:39151063-39151082 Msa1018710:intron 35.0%
CCAATTACCAACATTGTACA+CGG + chr7_1:39151073-39151092 None:intergenic 35.0%
!! CAATGTTGGTAATTGGTCAA+CGG - chr7_1:39151077-39151096 Msa1018710:intron 35.0%
!!! AGTTGCTTTTAATTGAGACC+GGG - chr7_1:39151310-39151329 Msa1018710:intron 35.0%
AGATTCAAAACATGACCGAA+GGG - chr7_1:39151336-39151355 Msa1018710:intron 35.0%
!! TAACCGATTTTAAATGGGGA+TGG - chr7_1:39151618-39151637 Msa1018710:intron 35.0%
! TTTTAAATGGGGATGGTTAG+TGG - chr7_1:39151625-39151644 Msa1018710:intron 35.0%
TAAACCACTCGAATTTCTAC+AGG - chr7_1:39151743-39151762 Msa1018710:intron 35.0%
AAACCACTCGAATTTCTACA+GGG - chr7_1:39151744-39151763 Msa1018710:intron 35.0%
!!! GTTTTAGAGCCATTGTTCAA+CGG - chr7_1:39151766-39151785 Msa1018710:intron 35.0%
!! TTTACCTTCTGAAATAGCCA+AGG + chr7_1:39151968-39151987 None:intergenic 35.0%
AATGCAGAAGGAAAAACTCT+TGG - chr7_1:39152222-39152241 Msa1018710:intron 35.0%
AGGAAAAACTCTTGGTTACT+TGG - chr7_1:39152230-39152249 Msa1018710:intron 35.0%
AATGGAATTCCTACAAAGAG+AGG + chr7_1:39152549-39152568 None:intergenic 35.0%
!! GGATTTGGGATTTTGATCAA+TGG + chr7_1:39152567-39152586 None:intergenic 35.0%
! GTTCGTCTTTCAATGGATTT+GGG + chr7_1:39152581-39152600 None:intergenic 35.0%
! TGTTCGTCTTTCAATGGATT+TGG + chr7_1:39152582-39152601 None:intergenic 35.0%
ATTCGATGTTCGTCTTTCAA+TGG + chr7_1:39152588-39152607 None:intergenic 35.0%
! CTTTTCAAATTCTACGGAAG+TGG + chr7_1:39152670-39152689 None:intergenic 35.0%
CACTTCCGTAGAATTTGAAA+AGG - chr7_1:39152668-39152687 Msa1018710:intron 35.0%
GGAGAAAATTCATTTCAGAG+AGG - chr7_1:39152875-39152894 Msa1018710:intron 35.0%
! AGAGATTAGTCACTGCTAAA+TGG - chr7_1:39152939-39152958 Msa1018710:intron 35.0%
GGATGGATATTCTCATCATA+TGG - chr7_1:39153428-39153447 Msa1018710:CDS 35.0%
AAGCCACAAGATAGCAAGAA+TGG + chr7_1:39145368-39145387 None:intergenic 40.0%
ACGTGATTTATCTACTCCAC+AGG - chr7_1:39145774-39145793 Msa1018710:intron 40.0%
!!! ATTGCCATGGTTTTAGCCAT+AGG - chr7_1:39145809-39145828 Msa1018710:intron 40.0%
ATTGAAGGTGGATCTCATGA+AGG - chr7_1:39146262-39146281 Msa1018710:CDS 40.0%
! AGAGGGCTTGGTATATTTGA+CGG - chr7_1:39146289-39146308 Msa1018710:intron 40.0%
AATCTACGTGAGTCTCATGT+TGG - chr7_1:39146384-39146403 Msa1018710:intron 40.0%
TTGGTCCCATCTAAATTTGG+TGG - chr7_1:39146403-39146422 Msa1018710:CDS 40.0%
TGGTCCCATCTAAATTTGGT+GGG - chr7_1:39146404-39146423 Msa1018710:CDS 40.0%
GAGACCCACCAAATTTAGAT+GGG + chr7_1:39146411-39146430 None:intergenic 40.0%
TGAGACCCACCAAATTTAGA+TGG + chr7_1:39146412-39146431 None:intergenic 40.0%
! GTGAATCAAAGAGAGTGTGT+TGG - chr7_1:39146433-39146452 Msa1018710:CDS 40.0%
! CTAGAAGACACCTTTTGTGA+AGG - chr7_1:39146549-39146568 Msa1018710:intron 40.0%
AAAGTGCAAATCACACCTTG+AGG - chr7_1:39146659-39146678 Msa1018710:intron 40.0%
! TTTTAGCAAGTCACACCTCA+AGG + chr7_1:39146677-39146696 None:intergenic 40.0%
TTGCTAAAAGACACCACCAA+AGG - chr7_1:39146688-39146707 Msa1018710:intron 40.0%
TGCTAAAAGACACCACCAAA+GGG - chr7_1:39146689-39146708 Msa1018710:intron 40.0%
CATACCTTCCGGTAAGAAAA+AGG + chr7_1:39147298-39147317 None:intergenic 40.0%
TGAGCGTAACTCAATTGGTA+AGG + chr7_1:39147410-39147429 None:intergenic 40.0%
TACCAATTGAGTTACGCTCA+CGG - chr7_1:39147410-39147429 Msa1018710:intron 40.0%
! TTTGACAAATGCTTGGTGGT+TGG - chr7_1:39147475-39147494 Msa1018710:intron 40.0%
GGGTTGGAATAGGTAGTAAT+TGG - chr7_1:39147542-39147561 Msa1018710:intron 40.0%
!! TTCCACTTTGGTGCCATTAA+TGG - chr7_1:39147577-39147596 Msa1018710:intron 40.0%
!! GAATTGGATGGTGCCATTAA+TGG + chr7_1:39147593-39147612 None:intergenic 40.0%
AGAGAGAAGAAATGTGGATG+GGG + chr7_1:39147757-39147776 None:intergenic 40.0%
GAGAGAGAAGAAATGTGGAT+GGG + chr7_1:39147758-39147777 None:intergenic 40.0%
AGAGAGAGAAGAAATGTGGA+TGG + chr7_1:39147759-39147778 None:intergenic 40.0%
!! CACCCTCTAAGACACAAAAA+AGG + chr7_1:39147797-39147816 None:intergenic 40.0%
CCCATGCAAGATCAATATTG+AGG - chr7_1:39147828-39147847 Msa1018710:CDS 40.0%
CCCTCAATATTGATCTTGCA+TGG + chr7_1:39147832-39147851 None:intergenic 40.0%
CAAGATCAATATTGAGGGGA+TGG - chr7_1:39147834-39147853 Msa1018710:CDS 40.0%
AGATCAATATTGAGGGGATG+GGG - chr7_1:39147836-39147855 Msa1018710:CDS 40.0%
ACGCGAGTATATGAGAAAGA+TGG + chr7_1:39147961-39147980 None:intergenic 40.0%
TAGAGATCTTTGTGCTCAGT+GGG + chr7_1:39148645-39148664 None:intergenic 40.0%
ATAGAGATCTTTGTGCTCAG+TGG + chr7_1:39148646-39148665 None:intergenic 40.0%
TCAGAGATTTAGCAAAGAGG+AGG + chr7_1:39148671-39148690 None:intergenic 40.0%
ACGAACCAAAATACGCATTG+TGG - chr7_1:39148696-39148715 Msa1018710:intron 40.0%
ACCAAAATACGCATTGTGGA+TGG - chr7_1:39148700-39148719 Msa1018710:intron 40.0%
ATTATGGCGTGTTTGGATGA+TGG - chr7_1:39148772-39148791 Msa1018710:intron 40.0%
GGTTTAAGAAGAGAATGGAG+TGG - chr7_1:39148793-39148812 Msa1018710:intron 40.0%
TTAAGAAGAGAATGGAGTGG+AGG - chr7_1:39148832-39148851 Msa1018710:intron 40.0%
TAATTCAAAATCGGGGTCGT+AGG + chr7_1:39149020-39149039 None:intergenic 40.0%
! CTACTAGGGCATCAAGAAAT+TGG + chr7_1:39149286-39149305 None:intergenic 40.0%
GTCACATGACTTGATACTCT+GGG + chr7_1:39149963-39149982 None:intergenic 40.0%
ATCAAGTCATGTGACCAGAT+AGG - chr7_1:39149968-39149987 Msa1018710:intron 40.0%
ACCAGATAGGACATTCAATG+TGG - chr7_1:39149981-39150000 Msa1018710:intron 40.0%
CCAGATAGGACATTCAATGT+GGG - chr7_1:39149982-39150001 Msa1018710:intron 40.0%
GGGAAGAAAGGATAGATGAA+TGG - chr7_1:39150116-39150135 Msa1018710:intron 40.0%
ATCAACGAGTTACTCGACAA+TGG - chr7_1:39150607-39150626 Msa1018710:CDS 40.0%
CATGATCCATTTGACTGTGT+AGG - chr7_1:39150724-39150743 Msa1018710:intron 40.0%
! GAAGAGCTAATGGATAGTCA+AGG + chr7_1:39150777-39150796 None:intergenic 40.0%
ATGGTGATCGAGTGAAACAT+TGG - chr7_1:39151007-39151026 Msa1018710:intron 40.0%
TCAAACATAGCTTGGACTTC+TGG + chr7_1:39151048-39151067 None:intergenic 40.0%
ACACGGATTCAAACATAGCT+TGG + chr7_1:39151056-39151075 None:intergenic 40.0%
!! CCGTGTACAATGTTGGTAAT+TGG - chr7_1:39151070-39151089 Msa1018710:intron 40.0%
!! TCATGTTTTGAATCTCGACC+CGG + chr7_1:39151331-39151350 None:intergenic 40.0%
GAGATTCAAAACATGACCGA+AGG - chr7_1:39151335-39151354 Msa1018710:intron 40.0%
GCAATTCAAGAGGGAGAAAT+CGG - chr7_1:39151524-39151543 Msa1018710:intron 40.0%
AAACCCTGTAGAAATTCGAG+TGG + chr7_1:39151750-39151769 None:intergenic 40.0%
GGATAATCTCCGTTGAACAA+TGG + chr7_1:39151778-39151797 None:intergenic 40.0%
!! TGGTGACAATTTTGATGCCT+TGG - chr7_1:39151948-39151967 Msa1018710:intron 40.0%
GTGTGAAATCCTCTCTTTGT+AGG - chr7_1:39152537-39152556 Msa1018710:CDS 40.0%
AATATGTGGAGGACACAAGA+TGG + chr7_1:39152906-39152925 None:intergenic 40.0%
! GATTAGTCACTGCTAAATGG+CGG - chr7_1:39152942-39152961 Msa1018710:intron 40.0%
ATGTTCGTGGATACTTTGCA+TGG - chr7_1:39153379-39153398 Msa1018710:intron 40.0%
TGTTCGTGGATACTTTGCAT+GGG - chr7_1:39153380-39153399 Msa1018710:intron 40.0%
TACCAACAGACACAGCTAAA+TGG - chr7_1:39153490-39153509 Msa1018710:CDS 40.0%
TACCATTTAGCTGTGTCTGT+TGG + chr7_1:39153495-39153514 None:intergenic 40.0%
AAATGCTCAAACCTTGTGCC+TGG + chr7_1:39145414-39145433 None:intergenic 45.0%
CGTTGAGATGGTTTCTGTGA+GGG + chr7_1:39145757-39145776 None:intergenic 45.0%
ACGTTGAGATGGTTTCTGTG+AGG + chr7_1:39145758-39145777 None:intergenic 45.0%
TGTGCCTATGGCTAAAACCA+TGG + chr7_1:39145816-39145835 None:intergenic 45.0%
TTCATCAAGCTTTCCGAACC+AGG - chr7_1:39146102-39146121 Msa1018710:intron 45.0%
GATCTCATGAAGGAGGAAGA+GGG - chr7_1:39146272-39146291 Msa1018710:intron 45.0%
TAAAAGACACCACCAAAGGG+TGG - chr7_1:39146692-39146711 Msa1018710:intron 45.0%
ACCAATTGAGTTACGCTCAC+GGG - chr7_1:39147411-39147430 Msa1018710:intron 45.0%
TGCCATTAATGGCACCAAAG+TGG + chr7_1:39147582-39147601 None:intergenic 45.0%
!! TGACTTAGAGATGGTGCCAT+TGG + chr7_1:39147688-39147707 None:intergenic 45.0%
TGTCTTAGAGGGTGAGAATG+TGG - chr7_1:39147803-39147822 Msa1018710:CDS 45.0%
GTCTTAGAGGGTGAGAATGT+GGG - chr7_1:39147804-39147823 Msa1018710:CDS 45.0%
!! TTGTGCTCAGTGGGTTGTTT+GGG + chr7_1:39148636-39148655 None:intergenic 45.0%
!! TTTGTGCTCAGTGGGTTGTT+TGG + chr7_1:39148637-39148656 None:intergenic 45.0%
! GCCATCCACAATGCGTATTT+TGG + chr7_1:39148704-39148723 None:intergenic 45.0%
AGAGGGAATTATGGCGTGTT+TGG - chr7_1:39148765-39148784 Msa1018710:intron 45.0%
AAGAGAATGGAGTGCGTGTT+TGG - chr7_1:39148801-39148820 Msa1018710:intron 45.0%
GGTCACATGACTTGATACTC+TGG + chr7_1:39149964-39149983 None:intergenic 45.0%
CCCACATTGAATGTCCTATC+TGG + chr7_1:39149985-39150004 None:intergenic 45.0%
! AAATGCTAGCTCTCTTGCTC+AGG - chr7_1:39150095-39150114 Msa1018710:intron 45.0%
! AATGCTAGCTCTCTTGCTCA+GGG - chr7_1:39150096-39150115 Msa1018710:intron 45.0%
AGGTGCAACATGGTCACAAA+AGG + chr7_1:39150757-39150776 None:intergenic 45.0%
TGGATAGTCAAGGTGCAACA+TGG + chr7_1:39150767-39150786 None:intergenic 45.0%
AAGCTATAGCATGGGAGATG+AGG + chr7_1:39151158-39151177 None:intergenic 45.0%
TCGAGGATTCAGAATCCCTT+CGG + chr7_1:39151354-39151373 None:intergenic 45.0%
TCCTTACAGTTCCAAACCAG+AGG - chr7_1:39151574-39151593 Msa1018710:intron 45.0%
!! TCCTCTGGTTTGGAACTGTA+AGG + chr7_1:39151578-39151597 None:intergenic 45.0%
! GATGCCTTGGCTATTTCAGA+AGG - chr7_1:39151961-39151980 Msa1018710:intron 45.0%
GGTAGATATGTCTATCCCGA+AGG - chr7_1:39152363-39152382 Msa1018710:intron 45.0%
! AGTGATGGCGTAAATGTTCG+TGG - chr7_1:39153366-39153385 Msa1018710:intron 45.0%
!! TTTATTTAATAATTCAAAAT+CGG + chr7_1:39149029-39149048 None:intergenic 5.0%
!!! TTTTTTAAAGATAAAATAAT+TGG - chr7_1:39152011-39152030 Msa1018710:intron 5.0%
!! ACTAAAATTATAAATATTAA+AGG + chr7_1:39153215-39153234 None:intergenic 5.0%
! GTTTTCCAACATTCGGGTCC+AGG - chr7_1:39145393-39145412 Msa1018710:CDS 50.0%
ATCTATGTGGGAACGATGCC+TGG + chr7_1:39146123-39146142 None:intergenic 50.0%
GAAGGTGGATCTCATGAAGG+AGG - chr7_1:39146265-39146284 Msa1018710:CDS 50.0%
GGATCTCATGAAGGAGGAAG+AGG - chr7_1:39146271-39146290 Msa1018710:intron 50.0%
TCTTGCTACAAGCCACCCTT+TGG + chr7_1:39146707-39146726 None:intergenic 50.0%
CCAATTGAGTTACGCTCACG+GGG - chr7_1:39147412-39147431 Msa1018710:intron 50.0%
! GTGGTGGAGATGGAATTGGA+TGG + chr7_1:39147605-39147624 None:intergenic 50.0%
! GTGTGTGGTGGAGATGGAAT+TGG + chr7_1:39147609-39147628 None:intergenic 50.0%
TGATGTGTGTGGGTTCGTGT+GGG + chr7_1:39147641-39147660 None:intergenic 50.0%
TTGATGTGTGTGGGTTCGTG+TGG + chr7_1:39147642-39147661 None:intergenic 50.0%
CACGAACCCACACACATCAA+CGG - chr7_1:39147642-39147661 Msa1018710:intron 50.0%
TCCTGACCGTTGATGTGTGT+GGG + chr7_1:39147651-39147670 None:intergenic 50.0%
ATCCTGACCGTTGATGTGTG+TGG + chr7_1:39147652-39147671 None:intergenic 50.0%
AACGGTCAGGATCTCAGCTA+TGG - chr7_1:39147660-39147679 Msa1018710:CDS 50.0%
GATCTCAGCTATGGCACCAA+TGG - chr7_1:39147669-39147688 Msa1018710:CDS 50.0%
!! TGTGCTCAGTGGGTTGTTTG+GGG + chr7_1:39148635-39148654 None:intergenic 50.0%
TGGAGTGCGTGTTTGGATGA+TGG - chr7_1:39148808-39148827 Msa1018710:intron 50.0%
CTCTCTTGCTCAGGGAAGAA+AGG - chr7_1:39150104-39150123 Msa1018710:intron 50.0%
CAGTTCCAAACCAGAGGATG+TGG - chr7_1:39151580-39151599 Msa1018710:intron 50.0%
AGCATCCACATCCTCTGGTT+TGG + chr7_1:39151588-39151607 None:intergenic 50.0%
TAGTCACTGCTAAATGGCGG+TGG - chr7_1:39152945-39152964 Msa1018710:intron 50.0%
TTGTGCCTGGACCCGAATGT+TGG + chr7_1:39145401-39145420 None:intergenic 55.0%
AACATTCGGGTCCAGGCACA+AGG - chr7_1:39145400-39145419 Msa1018710:CDS 55.0%
TGTGGGAACGATGCCTGGTT+CGG + chr7_1:39146118-39146137 None:intergenic 55.0%
CATGAAGGAGGAAGAGGGCT+TGG - chr7_1:39146277-39146296 Msa1018710:intron 55.0%
TGCTACAAGCCACCCTTTGG+TGG + chr7_1:39146704-39146723 None:intergenic 55.0%
CCCCGTGAGCGTAACTCAAT+TGG + chr7_1:39147415-39147434 None:intergenic 55.0%
! GTGTGTGTGTGTGGTGGAGA+TGG + chr7_1:39147615-39147634 None:intergenic 55.0%
TGTGGGGATGTGTGTGTGTG+TGG + chr7_1:39147624-39147643 None:intergenic 55.0%
GATGTGTGTGGGTTCGTGTG+GGG + chr7_1:39147640-39147659 None:intergenic 55.0%
ACCCACACACATCAACGGTC+AGG - chr7_1:39147647-39147666 Msa1018710:CDS 55.0%
!! TGCTCAGTGGGTTGTTTGGG+GGG + chr7_1:39148633-39148652 None:intergenic 55.0%
!! GTGCTCAGTGGGTTGTTTGG+GGG + chr7_1:39148634-39148653 None:intergenic 55.0%
TGAGCAGCATCCACATCCTC+TGG + chr7_1:39151593-39151612 None:intergenic 55.0%
TGCTGGAACATCAGCCGCTC+AGG - chr7_1:39146153-39146172 Msa1018710:intron 60.0%
GGGGATGTGTGTGTGTGTGG+TGG + chr7_1:39147621-39147640 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 39145276 39153571 39145276 ID=Msa1018710;Name=Msa1018710
chr7_1 mRNA 39145276 39153571 39145276 ID=Msa1018710-mRNA-1;Parent=Msa1018710;Name=Msa1018710-mRNA-1;_AED=0.15;_eAED=0.15;_QI=46|0.92|0.93|1|1|1|15|23|543
chr7_1 exon 39145276 39145479 39145276 ID=Msa1018710-mRNA-1:exon:7593;Parent=Msa1018710-mRNA-1
chr7_1 exon 39146195 39146288 39146195 ID=Msa1018710-mRNA-1:exon:7592;Parent=Msa1018710-mRNA-1
chr7_1 exon 39146394 39146496 39146394 ID=Msa1018710-mRNA-1:exon:7591;Parent=Msa1018710-mRNA-1
chr7_1 exon 39146596 39146630 39146596 ID=Msa1018710-mRNA-1:exon:7590;Parent=Msa1018710-mRNA-1
chr7_1 exon 39146865 39147082 39146865 ID=Msa1018710-mRNA-1:exon:7589;Parent=Msa1018710-mRNA-1
chr7_1 exon 39147208 39147323 39147208 ID=Msa1018710-mRNA-1:exon:7588;Parent=Msa1018710-mRNA-1
chr7_1 exon 39147644 39147881 39147644 ID=Msa1018710-mRNA-1:exon:7587;Parent=Msa1018710-mRNA-1
chr7_1 exon 39148014 39148101 39148014 ID=Msa1018710-mRNA-1:exon:7586;Parent=Msa1018710-mRNA-1
chr7_1 exon 39148219 39148296 39148219 ID=Msa1018710-mRNA-1:exon:7585;Parent=Msa1018710-mRNA-1
chr7_1 exon 39149263 39149338 39149263 ID=Msa1018710-mRNA-1:exon:7584;Parent=Msa1018710-mRNA-1
chr7_1 exon 39150599 39150657 39150599 ID=Msa1018710-mRNA-1:exon:7583;Parent=Msa1018710-mRNA-1
chr7_1 exon 39152537 39152585 39152537 ID=Msa1018710-mRNA-1:exon:7582;Parent=Msa1018710-mRNA-1
chr7_1 exon 39152673 39152813 39152673 ID=Msa1018710-mRNA-1:exon:7581;Parent=Msa1018710-mRNA-1
chr7_1 exon 39153052 39153107 39153052 ID=Msa1018710-mRNA-1:exon:7580;Parent=Msa1018710-mRNA-1
chr7_1 exon 39153426 39153571 39153426 ID=Msa1018710-mRNA-1:exon:7579;Parent=Msa1018710-mRNA-1
chr7_1 five_prime_UTR 39153526 39153571 39153526 ID=Msa1018710-mRNA-1:five_prime_utr;Parent=Msa1018710-mRNA-1
chr7_1 CDS 39153426 39153525 39153426 ID=Msa1018710-mRNA-1:cds;Parent=Msa1018710-mRNA-1
chr7_1 CDS 39153052 39153107 39153052 ID=Msa1018710-mRNA-1:cds;Parent=Msa1018710-mRNA-1
chr7_1 CDS 39152673 39152813 39152673 ID=Msa1018710-mRNA-1:cds;Parent=Msa1018710-mRNA-1
chr7_1 CDS 39152537 39152585 39152537 ID=Msa1018710-mRNA-1:cds;Parent=Msa1018710-mRNA-1
chr7_1 CDS 39150599 39150657 39150599 ID=Msa1018710-mRNA-1:cds;Parent=Msa1018710-mRNA-1
chr7_1 CDS 39149263 39149338 39149263 ID=Msa1018710-mRNA-1:cds;Parent=Msa1018710-mRNA-1
chr7_1 CDS 39148219 39148296 39148219 ID=Msa1018710-mRNA-1:cds;Parent=Msa1018710-mRNA-1
chr7_1 CDS 39148014 39148101 39148014 ID=Msa1018710-mRNA-1:cds;Parent=Msa1018710-mRNA-1
chr7_1 CDS 39147644 39147881 39147644 ID=Msa1018710-mRNA-1:cds;Parent=Msa1018710-mRNA-1
chr7_1 CDS 39147208 39147323 39147208 ID=Msa1018710-mRNA-1:cds;Parent=Msa1018710-mRNA-1
chr7_1 CDS 39146865 39147082 39146865 ID=Msa1018710-mRNA-1:cds;Parent=Msa1018710-mRNA-1
chr7_1 CDS 39146596 39146630 39146596 ID=Msa1018710-mRNA-1:cds;Parent=Msa1018710-mRNA-1
chr7_1 CDS 39146394 39146496 39146394 ID=Msa1018710-mRNA-1:cds;Parent=Msa1018710-mRNA-1
chr7_1 CDS 39146195 39146288 39146195 ID=Msa1018710-mRNA-1:cds;Parent=Msa1018710-mRNA-1
chr7_1 CDS 39145299 39145479 39145299 ID=Msa1018710-mRNA-1:cds;Parent=Msa1018710-mRNA-1
chr7_1 three_prime_UTR 39145276 39145298 39145276 ID=Msa1018710-mRNA-1:three_prime_utr;Parent=Msa1018710-mRNA-1
Gene Sequence

>Msa1018710

ATGGAGAAAATGAAGATTCTGTCATCTTTGAGAATTACTAAAACCATTCTTGCTATCTTGTGGCTTGTTTTGTTTTCCAACATTCGGGTCCAGGCACAAGGAATACTTCTACTTCCCTCACAGAAACCATCTCAACGTGATTTATCTACTCCACAGACAAGAGTAATACAGATTGGAGAAGGAGCTACCACTAATGCACATGACTCTATATTGAAATTTGTTAATTCATCAAGCTTTCCGAACCAGGCATCGTTCCCACATAGATTTTTGTTTGGTGCTGGAACATCAGCCGCTCAGATTGAAGGTGGATCTCATGAAGGAGGAAGAGGGCTTGGTATATTTGACGCAGTGTATTCTGGGTATGATAGATTTGTTACAAAGATTGAGCACTACAAGAGATATAAGAAAGATGTACAAAAATTGAAGATTCTTGGAGTAAATTCTTACAGATTTTCCATATCTTGGAATAGAGTAATACCAGATGGAACCTTAAAAGGAGGTATAAACAAAGAAGGTATCAACTTCTACAACAATTTGATCAACGAGTTACTCGACAATGGTATTGAACCTTTTGTGACCATGTTGCACCTTGACTATCCATTAGCTCTTCAAAAAAAGTTTGGTGGCTTCTCAAATCACTCTATTGTGAAACATTTCAAGGATTACAGTGAACTCCTATTCAAAACATATGGTGATCGAGTGAAACATTGGACTACAATTAATGAGCCAGAAGTCCAAGCTATGTTTGAATCCGTGTACAATGTTGGTAATTGGTCAACGGACGCATGCCAAACTACTAAAATATGTACAGAAGTATATACTAAACTTCATAACTTCCTCATCTCCCATGCTATAGCTTCAAAGTTATACAAGTCCAAATTCCAAGCAATTCAAGAGGGAGAAATCGGACTTGTTATTTCTTCAGAATCATATGTTCCTTACAGTTCCAAACCAGAGGATGTGGATGCTGCTCAAAGATTAACCGATTTTAAATGGGGATGGGTTTTAGAGCCATTGTTCAACGGAGATTATCCAAAAATAATGAGAAAGCTAGTGGGGAAAAGACTACCCAAATTCACTAAAAATGAGAAAGAAATGTTGAAAGGAAGTACAGACTTTATTGGAATCAATTATTATACTTCTCACTTTGTTAAAAATGAACCAAATAGAAACAAGATTACTACTGGTGACAATTTTGATGCCTTGGCTATTTCAGAAGATATTAATGCAGAAGGAAAAACTCTTGGTTACTTGGATCAATATGGTGGTAGATATGTCTATCCCGAAGGATTATATAATTTCTTACTCTACATTAACAAAAAGTACAAAAATCTCAAAATCTACATAACTGAAAATGGAATTCCATTGATCAAAATCCCAAATCCATTGAAAGACGAACATCGAATTGCTTTCATTGCTGCACATATAAATGCTACCAAATCAGCAATTGATGATGGCGTAAATGTTCGTGGATACTTTGCATGGGCAGCATTTGATACGTTTGATTTTAAGGATGGATATTCTCATCATATGGGGCTTTATCATGTCAATTTTAATGATGGTCTCAAACGTATACCAACAGACACAGCTAAATGGTACAAAAATTATTTGACCCGCGATTTGAAACAATAA
Protein sequence

>Msa1018710

MEKMKILSSLRITKTILAILWLVLFSNIRVQAQGILLLPSQKPSQRDLSTPQTRVIQIGEGATTNAHDSILKFVNSSSFPNQASFPHRFLFGAGTSAAQIEGGSHEGGRGLGIFDAVYSGYDRFVTKIEHYKRYKKDVQKLKILGVNSYRFSISWNRVIPDGTLKGGINKEGINFYNNLINELLDNGIEPFVTMLHLDYPLALQKKFGGFSNHSIVKHFKDYSELLFKTYGDRVKHWTTINEPEVQAMFESVYNVGNWSTDACQTTKICTEVYTKLHNFLISHAIASKLYKSKFQAIQEGEIGLVISSESYVPYSSKPEDVDAAQRLTDFKWGWVLEPLFNGDYPKIMRKLVGKRLPKFTKNEKEMLKGSTDFIGINYYTSHFVKNEPNRNKITTGDNFDALAISEDINAEGKTLGYLDQYGGRYVYPEGLYNFLLYINKKYKNLKIYITENGIPLIKIPNPLKDEHRIAFIAAHINATKSAIDDGVNVRGYFAWAAFDTFDFKDGYSHHMGLYHVNFNDGLKRIPTDTAKWYKNYLTRDLKQ*