AlfalfaGEDB | Msa0010560

M. sativa cultivar zhongmu-4 / Msa0010560

KEGG: K03327
GO: GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006855 GO:0008150 GO:0015238 GO:0015893 GO:0016020 GO:0022857 GO:0031090 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805
PFAM: PF01554.21

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0010560	XP_012570815.1	71.728	191	27	3	433	599	1	188	7.68e-74	259
Msa0010560	XP_012570815.1	74.262	474	75	5	1	430	1	471	0.0	665
Msa0010560	XP_012570815.1	82.635	167	28	1	600	766	300	465	7.31e-77	267

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0010560	sp\|Q9SX83\|DTX33_ARATH	60.341	469	139	5	6	430	8	473	0.0	543
Msa0010560	sp\|Q9SX83\|DTX33_ARATH	65.868	167	57	0	600	766	301	467	3.43e-64	225
Msa0010560	sp\|Q9SX83\|DTX33_ARATH	54.737	190	58	4	433	597	1	187	1.31e-54	199

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0010560	Msa0050990	0.977808	1.581075e-144	-8.615850e-47
Msa0010560	Msa0098440	0.800153	1.647067e-48	-8.615850e-47
Msa0010560	Msa0101300	0.960591	9.900929e-119	-8.615850e-47
Msa0010560	Msa0145520	0.812233	4.700354e-51	-8.615850e-47
Msa0010560	Msa0145600	0.841541	4.464143e-58	-8.615850e-47
Msa0010560	Msa0147560	0.823212	1.563777e-53	-8.615850e-47
Msa0010560	Msa0193890	0.822893	1.856261e-53	-8.615850e-47
Msa0010560	Msa0219190	0.819566	1.085783e-52	-8.615850e-47
Msa0010560	Msa0221290	0.818567	1.832871e-52	-8.615850e-47
Msa0010560	Msa0298240	0.816004	6.912971e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0010560	MtrunA17_Chr1g0154441	87.927	381	12	2	84	430	1	381	0.0	641
Msa0010560	MtrunA17_Chr1g0154441	97.006	167	5	0	600	766	209	375	2.72e-99	312
Msa0010560	MtrunA17_Chr1g0154441	97.938	97	2	0	503	599	1	97	1.46e-56	198
Msa0010560	MtrunA17_Chr8g0368001	50.569	439	173	3	36	430	51	489	6.26e-145	435
Msa0010560	MtrunA17_Chr8g0368001	60.526	152	36	1	469	596	51	202	1.31e-50	185
Msa0010560	MtrunA17_Chr8g0368001	45.783	166	90	0	601	766	318	483	8.28e-43	162
Msa0010560	MtrunA17_Chr5g0412771	46.322	503	212	5	2	458	23	513	1.43e-139	421
Msa0010560	MtrunA17_Chr5g0412771	53.988	163	51	1	459	597	47	209	6.12e-45	169
Msa0010560	MtrunA17_Chr5g0412771	48.214	168	87	0	599	766	322	489	6.58e-44	166
Msa0010560	MtrunA17_Chr1g0202761	43.983	482	217	6	1	430	1	481	2.56e-127	389

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0010560	AT1G47530.1	60.341	469	139	5	6	430	8	473	0.0	543
Msa0010560	AT1G47530.1	65.868	167	57	0	600	766	301	467	3.48e-65	225
Msa0010560	AT1G47530.1	54.737	190	58	4	433	597	1	187	1.33e-55	199
Msa0010560	AT1G47530.2	63.780	381	104	2	84	430	1	381	4.92e-163	477
Msa0010560	AT1G47530.2	65.868	167	57	0	600	766	209	375	3.52e-66	225
Msa0010560	AT1G47530.2	74.737	95	24	0	503	597	1	95	2.74e-41	156
Msa0010560	AT3G26590.1	48.764	445	184	3	30	430	39	483	5.26e-140	422
Msa0010560	AT3G26590.1	46.535	202	74	4	423	597	3	197	7.00e-46	172
Msa0010560	AT3G26590.1	49.102	167	85	0	600	766	311	477	7.42e-45	169
Msa0010560	AT1G23300.1	49.348	460	183	4	15	430	29	482	3.42e-139	420

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Find 176 sgRNAs with CRISPR-Local

Find 842 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTAAACAAATCTGCAA+AGG	0.586352	1_1:+15998994	None:intergenic
AAAAGTTCTTACAAGCACAA+AGG	0.640238	1_1:-15999222	Msa0010560:CDS
AAAAGTTCTTACAAGCACAA+AGG	0.665076	1_1:-15987470	Msa0010560:CDS
AAACTTAATTGGGGCTTAGT+TGG	0.382505	1_1:-15999124	Msa0010560:CDS
AAAGCATATGCAAATATTTG+TGG	0.422937	1_1:+15987507	None:intergenic
AAAGCATATGCAAATATTTG+TGG	0.422937	1_1:+15999259	None:intergenic
AAATCAGACGGTGCTTGGAG+TGG	0.570545	1_1:-15999031	Msa0010560:CDS
AACCAGACAAGACTGGTTGA+AGG	0.537386	1_1:+15986340	None:intergenic
AACCAGACAAGACTGGTTGA+AGG	0.537386	1_1:+15996662	None:intergenic
AAGAAGCTATGGAAAATAGC+TGG	0.552120	1_1:-15989325	Msa0010560:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATTGTTCACAAAATTGGAG+TGG	-	chr1_1:15985924-15985943	Msa0010560:intron	30.0%
GATAAAGCAGTTAAGATTGT+TGG	+	chr1_1:15985979-15985998	None:intergenic	30.0%
ATTGAAAACTCTGTTATTGC+TGG	-	chr1_1:15986072-15986091	Msa0010560:intron	30.0%
GAATTTACATGCAAAGATCA+TGG	-	chr1_1:15986450-15986469	Msa0010560:CDS	30.0%
AAAAGTTCTTACAAGCACAA+AGG	-	chr1_1:15986735-15986754	Msa0010560:CDS	30.0%
TTGATATCCATAACATCACT+AGG	+	chr1_1:15986766-15986785	None:intergenic	30.0%
GTGATGTTATGGATATCAAT+AGG	-	chr1_1:15986767-15986786	Msa0010560:intron	30.0%
AATATTAGAAGCCAACTAAG+AGG	+	chr1_1:15986812-15986831	None:intergenic	30.0%
CAATTATTCTCAACACATCA+TGG	-	chr1_1:15986861-15986880	Msa0010560:intron	30.0%
AGTGAATTTCGAAAATGTGA+TGG	-	chr1_1:15987084-15987103	Msa0010560:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_1	gene	15985841	16000138	15985841	ID=Msa0010560;Name=Msa0010560
chr1_1	mRNA	15985841	16000138	15985841	ID=Msa0010560-mRNA-1;Parent=Msa0010560;Name=Msa0010560-mRNA-1;_AED=0.21;_eAED=0.21;_QI=0\|0.12\|0\|1\|0.62\|0.64\|17\|0\|766
chr1_1	exon	15999896	16000138	15999896	ID=Msa0010560-mRNA-1:exon:5837;Parent=Msa0010560-mRNA-1
chr1_1	exon	15999404	15999599	15999404	ID=Msa0010560-mRNA-1:exon:5836;Parent=Msa0010560-mRNA-1
chr1_1	exon	15999191	15999304	15999191	ID=Msa0010560-mRNA-1:exon:5835;Parent=Msa0010560-mRNA-1
chr1_1	exon	15998965	15999181	15998965	ID=Msa0010560-mRNA-1:exon:5834;Parent=Msa0010560-mRNA-1
chr1_1	exon	15998154	15998210	15998154	ID=Msa0010560-mRNA-1:exon:5833;Parent=Msa0010560-mRNA-1
chr1_1	exon	15996665	15996903	15996665	ID=Msa0010560-mRNA-1:exon:5832;Parent=Msa0010560-mRNA-1
chr1_1	exon	15996445	15996563	15996445	ID=Msa0010560-mRNA-1:exon:5831;Parent=Msa0010560-mRNA-1
chr1_1	exon	15995934	15996020	15995934	ID=Msa0010560-mRNA-1:exon:5830;Parent=Msa0010560-mRNA-1
chr1_1	exon	15995776	15995794	15995776	ID=Msa0010560-mRNA-1:exon:5829;Parent=Msa0010560-mRNA-1
chr1_1	exon	15989258	15989466	15989258	ID=Msa0010560-mRNA-1:exon:5828;Parent=Msa0010560-mRNA-1
chr1_1	exon	15988718	15988913	15988718	ID=Msa0010560-mRNA-1:exon:5827;Parent=Msa0010560-mRNA-1
chr1_1	exon	15987461	15987552	15987461	ID=Msa0010560-mRNA-1:exon:5826;Parent=Msa0010560-mRNA-1
chr1_1	exon	15987218	15987225	15987218	ID=Msa0010560-mRNA-1:exon:5825;Parent=Msa0010560-mRNA-1
chr1_1	exon	15986711	15986767	15986711	ID=Msa0010560-mRNA-1:exon:5824;Parent=Msa0010560-mRNA-1
chr1_1	exon	15986343	15986581	15986343	ID=Msa0010560-mRNA-1:exon:5823;Parent=Msa0010560-mRNA-1
chr1_1	exon	15986123	15986241	15986123	ID=Msa0010560-mRNA-1:exon:5822;Parent=Msa0010560-mRNA-1
chr1_1	exon	15985841	15985927	15985841	ID=Msa0010560-mRNA-1:exon:5821;Parent=Msa0010560-mRNA-1
chr1_1	CDS	15999896	16000138	15999896	ID=Msa0010560-mRNA-1:cds;Parent=Msa0010560-mRNA-1
chr1_1	CDS	15999404	15999599	15999404	ID=Msa0010560-mRNA-1:cds;Parent=Msa0010560-mRNA-1
chr1_1	CDS	15999191	15999304	15999191	ID=Msa0010560-mRNA-1:cds;Parent=Msa0010560-mRNA-1
chr1_1	CDS	15998965	15999181	15998965	ID=Msa0010560-mRNA-1:cds;Parent=Msa0010560-mRNA-1
chr1_1	CDS	15998154	15998210	15998154	ID=Msa0010560-mRNA-1:cds;Parent=Msa0010560-mRNA-1
chr1_1	CDS	15996665	15996903	15996665	ID=Msa0010560-mRNA-1:cds;Parent=Msa0010560-mRNA-1
chr1_1	CDS	15996445	15996563	15996445	ID=Msa0010560-mRNA-1:cds;Parent=Msa0010560-mRNA-1
chr1_1	CDS	15995934	15996020	15995934	ID=Msa0010560-mRNA-1:cds;Parent=Msa0010560-mRNA-1
chr1_1	CDS	15995776	15995794	15995776	ID=Msa0010560-mRNA-1:cds;Parent=Msa0010560-mRNA-1
chr1_1	CDS	15989258	15989466	15989258	ID=Msa0010560-mRNA-1:cds;Parent=Msa0010560-mRNA-1
chr1_1	CDS	15988718	15988913	15988718	ID=Msa0010560-mRNA-1:cds;Parent=Msa0010560-mRNA-1
chr1_1	CDS	15987461	15987552	15987461	ID=Msa0010560-mRNA-1:cds;Parent=Msa0010560-mRNA-1
chr1_1	CDS	15987218	15987225	15987218	ID=Msa0010560-mRNA-1:cds;Parent=Msa0010560-mRNA-1
chr1_1	CDS	15986711	15986767	15986711	ID=Msa0010560-mRNA-1:cds;Parent=Msa0010560-mRNA-1
chr1_1	CDS	15986343	15986581	15986343	ID=Msa0010560-mRNA-1:cds;Parent=Msa0010560-mRNA-1
chr1_1	CDS	15986123	15986241	15986123	ID=Msa0010560-mRNA-1:cds;Parent=Msa0010560-mRNA-1
chr1_1	CDS	15985841	15985927	15985841	ID=Msa0010560-mRNA-1:cds;Parent=Msa0010560-mRNA-1

Gene Sequence

>Msa0010560

ATGTCTATGGACAGTCCTCTACTAGATAACAGTGTCCACTCTCCTCCTAGTGTTGGTCATCATGAGGAAGAGAAGCCACTTAAAATTGTTCACAAAATTGGAGTGGAGTCGAAGAAGCTATGGAAAATAGCTGGTCCAACAATCTTAACTGCTTTATCTCAGTTCTCACTAGGTGCATTGACTTCTACCTTTGTTGGCCATGTTAACGAGCTCGATCTTGCAGCTTTTTCTATTGAAAACTCTTTGGGTATGGGAAGTGCATTGGAGACACTATGTGGACAAGCATTTGGTGCTGGACATATAAGGATGATGGGAATTTACATGCAAAGATCATGGATTATCTTGGTGGCTACTGGCCTTTTATTGTTACCTTTTTATATTTGGGCAACTCCCCTCTTGAAGCTTGTTGGACAGACTGATGAGGTCGCAGAAGCTGCTGGCACGTTTGCTTTGTGGATGATACCACAAATATTTGCATATGCTTTGAACTTTCCAATTCAAAAGTTCTTACAAGCACAAAGGAAAGTCCTAGTGATGTTATGGATATCAATAGTGTTACATGTACCTCTTAGTTGGCTTCTAATATTGAAACTTAATTGGGGCTTAGTTGGAGCTGCAATTATTCTCAACACATCATGGTGGTTGATAGTCATTGGTCAACTTCTGTACATTTTCATAACCAAATCAGACGGTGCTTGGAGTGGATTCTCATGGCTAGCCTTTGCAGATTTGTTTAGTTTTTTGAAGCTTTCTATAGCTTCAGCTGTTATTATGAACATAAATGGTTGGGATATGATGATCGCGTTAGGGTTTAATGTAGCAATAAGTGTGAGAGTATCAAATGAACTTGGGGCAGGTGATTTTCGAGCTGCAAAGTTAGCAGTGATAGTGGTTTCCCTCACATCAATATCCATTGGTGTTGTTGCCATGATCATAGTACTAGCAACTAGAGACTACTTTCCTCAATTGTTCACTTCAAGCTATGAGGTTGCAAAGGAAACAACTAAACTTGCTGCTTTGCTTAGTATCACTGTACTTCTAAACAGCCTTCAACCAGTCTTGTCTGGTGTTGCTATTGGAGCTGGTTGGCAATCTCTTGTAGCTTACATAAATCTTGGATCCTACTATGTTGTTGGATTACCAGCTGGGATATTGTTGGGCTTCACATTTGGTTTTGGAGCAGAGGGTATTTGGTCAGGTCTGATTGGAGGCATAGTTGTGCAGACCACAATCCTTATAATTGTGACTTCATTAACCAACTGGAAAAAAGAGGCTGATGAAGCAGAAAGCCTTACCATGGCAATCGACGACAGTCCTCTACTAGATAACAGTGTCAACTCTCCTCCTAGTGTTGTTCATCATGAGGAAGAGAAGCCACTGAAAATTGTTCACAAAATTGGGGTGGAGTCGAAGAAGCTATGGAAAATAGCTGGTCCAACAATCATAACTGCATTATCTCAGTACTCGCTTGGTGCATTCACTTCTACGTTTGTTGGCCATTTGGGTATGGGAAGTGCATTGGAGACACTATGTGGACAAGCATTTGGTGCTGGACATATAAGGATGATGGGAATTTACATGCAAAGATCATGGATTATCTTGGTGGCTACTGGCCTTTTATTGTTACCTTTTTATATTTGGGCAACTCCCCTCTTGAAGCTTGTTGGACAGACTGATGAGATCGCAGAAGCTGCTGGCACATTTGCTTTGTGGATGATACCACAAATATTTGCATATGCTTTGAACTTTCCAATCCAAAAGTTCTTACAAGCACAAAGGAAAGTCCTGCTTCAGCTTATGAACATAAACGGTTGGGATATGATGATCGCGCTAGGGTTTAACGTTGCAATAAGTGTGAGAGTATCAAATGAACTTGGAGCAGGTGATTTTGGAGCTGCAAAGTTCGCAGTGATAGTAGTTTCCCTCACATCAATATCCATTGGTGTTGTTGCCATGATCATAGTACTAACAACTAGAGATTACTTTCCTCAATTGTTCACTTCAAGCTATGAGGTTGCAAAGGAAACAACTAAACTTGCTGCTTTGCTTAGTATCACAGTACTTCTAAACAGCCTTCAACCAGTCTTGTCTGGTGTTGCCATTGGAGCTGGTTGGCAATCTCTTGTAGCTTACATAAATCTTGGATCCTACTATGTTGTTGGATTACCAGCAGGGATATTGTTGGGCTTCACATTTGGTTTTGGAGCAGAGGGTATTTGGTCAGGTCTGATTGGAGGCATAGTTGTGCAGACCATAATCCTTATAATTGTTACTTCATTAACCAATTGGAAAAAAGAG

Protein sequence

>Msa0010560

MSMDSPLLDNSVHSPPSVGHHEEEKPLKIVHKIGVESKKLWKIAGPTILTALSQFSLGALTSTFVGHVNELDLAAFSIENSLGMGSALETLCGQAFGAGHIRMMGIYMQRSWIILVATGLLLLPFYIWATPLLKLVGQTDEVAEAAGTFALWMIPQIFAYALNFPIQKFLQAQRKVLVMLWISIVLHVPLSWLLILKLNWGLVGAAIILNTSWWLIVIGQLLYIFITKSDGAWSGFSWLAFADLFSFLKLSIASAVIMNINGWDMMIALGFNVAISVRVSNELGAGDFRAAKLAVIVVSLTSISIGVVAMIIVLATRDYFPQLFTSSYEVAKETTKLAALLSITVLLNSLQPVLSGVAIGAGWQSLVAYINLGSYYVVGLPAGILLGFTFGFGAEGIWSGLIGGIVVQTTILIIVTSLTNWKKEADEAESLTMAIDDSPLLDNSVNSPPSVVHHEEEKPLKIVHKIGVESKKLWKIAGPTIITALSQYSLGAFTSTFVGHLGMGSALETLCGQAFGAGHIRMMGIYMQRSWIILVATGLLLLPFYIWATPLLKLVGQTDEIAEAAGTFALWMIPQIFAYALNFPIQKFLQAQRKVLLQLMNINGWDMMIALGFNVAISVRVSNELGAGDFGAAKFAVIVVSLTSISIGVVAMIIVLTTRDYFPQLFTSSYEVAKETTKLAALLSITVLLNSLQPVLSGVAIGAGWQSLVAYINLGSYYVVGLPAGILLGFTFGFGAEGIWSGLIGGIVVQTIILIIVTSLTNWKKE