Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0529870 | XP_024637108.1 | 99.556 | 225 | 1 | 0 | 1 | 225 | 1 | 225 | 8.11e-163 | 458 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0529870 | sp|Q9LMP7|GOS11_ARATH | 78.222 | 225 | 47 | 2 | 1 | 225 | 1 | 223 | 6.22e-127 | 360 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0529870 | G7JD87 | 99.556 | 225 | 1 | 0 | 1 | 225 | 1 | 225 | 3.87e-163 | 458 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0079130 | Msa0529870 | 0.809336 | 1.990049e-50 | -8.615850e-47 |
| Msa0090970 | Msa0529870 | 0.801804 | 7.574564e-49 | -8.615850e-47 |
| Msa0190530 | Msa0529870 | 0.806589 | 7.644911e-50 | -8.615850e-47 |
| Msa0206830 | Msa0529870 | 0.808295 | 3.322025e-50 | -8.615850e-47 |
| Msa0218370 | Msa0529870 | 0.824319 | 8.611113e-54 | -8.615850e-47 |
| Msa0401560 | Msa0529870 | 0.831784 | 1.371409e-55 | -8.615850e-47 |
| Msa0414140 | Msa0529870 | 0.808691 | 2.734980e-50 | -8.615850e-47 |
| Msa0529870 | Msa0530290 | 0.802197 | 6.288400e-49 | -8.615850e-47 |
| Msa0529870 | Msa0662540 | 0.804324 | 2.281060e-49 | -8.615850e-47 |
| Msa0529870 | Msa0696540 | 0.800677 | 1.288214e-48 | -8.615850e-47 |
| Msa0529870 | Msa0705990 | 0.802401 | 5.708385e-49 | -8.615850e-47 |
| Msa0529870 | Msa0750850 | 0.805241 | 1.467703e-49 | -8.615850e-47 |
| Msa0529870 | Msa0756380 | 0.819905 | 9.083820e-53 | -8.615850e-47 |
| Msa0529870 | Msa0960390 | 0.800815 | 1.207463e-48 | -8.615850e-47 |
| Msa0529870 | Msa0970480 | 0.828340 | 9.490648e-55 | -8.615850e-47 |
| Msa0529870 | Msa0994370 | 0.804579 | 2.018571e-49 | -8.615850e-47 |
| Msa0529870 | Msa1029620 | 0.807219 | 5.624388e-50 | -8.615850e-47 |
| Msa0529870 | Msa1063420 | 0.821026 | 5.023777e-53 | -8.615850e-47 |
| Msa0529870 | Msa1121110 | 0.800608 | 1.330809e-48 | -8.615850e-47 |
| Msa0529870 | Msa1221330 | 0.803936 | 2.747936e-49 | -8.615850e-47 |
| Msa0529870 | Msa1270660 | 0.814837 | 1.257061e-51 | -8.615850e-47 |
| Msa0529870 | Msa1307180 | 0.801395 | 9.188510e-49 | -8.615850e-47 |
| Msa0529870 | Msa1332050 | 0.805034 | 1.621607e-49 | -8.615850e-47 |
| Msa0529870 | Msa1400930 | 0.800181 | 1.625813e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0529870 | MtrunA17_Chr4g0001201 | 99.057 | 212 | 2 | 0 | 14 | 225 | 2 | 213 | 2.18e-155 | 429 |
| Msa0529870 | MtrunA17_Chr2g0333751 | 84.444 | 225 | 33 | 1 | 1 | 225 | 1 | 223 | 2.16e-137 | 384 |
| Msa0529870 | MtrunA17_Chr4g0011831 | 35.417 | 240 | 134 | 5 | 1 | 225 | 7 | 240 | 4.89e-45 | 150 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0529870 | AT1G15880.1 | 78.222 | 225 | 47 | 2 | 1 | 225 | 1 | 223 | 6.32e-128 | 360 |
| Msa0529870 | AT2G45200.1 | 35.417 | 240 | 134 | 5 | 1 | 225 | 6 | 239 | 1.50e-43 | 147 |
| Msa0529870 | AT2G45200.2 | 33.205 | 259 | 132 | 6 | 1 | 225 | 6 | 257 | 8.50e-41 | 140 |
Find 59 sgRNAs with CRISPR-Local
Find 216 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAAATGAGGCTGTATATTT+TGG | 0.115943 | 4_1:-3658002 | Msa0529870:exon |
| TGATAGATGCATTCTCTTTC+AGG | 0.138922 | 4_1:+3659051 | None:intergenic |
| AATAGACAAGGAACACAAAA+AGG | 0.245501 | 4_1:+3657957 | None:intergenic |
| CACTGACATGTCCGGTATTC+CGG | 0.282446 | 4_1:+3659027 | None:intergenic |
| AAACATAAGAAAAGTGAAAA+AGG | 0.293065 | 4_1:-3661416 | Msa0529870:five_prime_UTR |
| GTCTTCCAGCGTTCAACATT+TGG | 0.323835 | 4_1:-3658655 | Msa0529870:CDS |
| CCAAAATATACAGCCTCATT+TGG | 0.339396 | 4_1:+3658002 | None:intergenic |
| TGCCACAAGGGAAAGTATTA+AGG | 0.357138 | 4_1:+3658062 | None:intergenic |
| TGATGATTGTTGGTTGGGTT+GGG | 0.374016 | 4_1:+3661332 | None:intergenic |
| TCTGATGATGATTGTTGGTT+GGG | 0.379817 | 4_1:+3661327 | None:intergenic |
| ATGATGATTGTTGGTTGGGT+TGG | 0.383656 | 4_1:+3661331 | None:intergenic |
| ATCATCTGGCGGCTCAGATA+TGG | 0.394492 | 4_1:-3659602 | Msa0529870:CDS |
| ATGGGATTCCCTTCGCAAAC+AGG | 0.405350 | 4_1:-3661239 | Msa0529870:intron |
| AAGAAAACTTGAAGCTCAAT+TGG | 0.407508 | 4_1:-3659767 | Msa0529870:CDS |
| TCTACCAATCTTTCAACAAA+AGG | 0.422252 | 4_1:-3659712 | Msa0529870:CDS |
| GCATCTGTGAGTTTACTTGT+TGG | 0.422941 | 4_1:+3659635 | None:intergenic |
| TTGAATCTGATGATGATTGT+TGG | 0.444558 | 4_1:+3661322 | None:intergenic |
| GACAAGATTCGACTTGGAAG+AGG | 0.446979 | 4_1:-3659099 | Msa0529870:CDS |
| TGGAGGTACCAACTACTTCA+TGG | 0.458718 | 4_1:-3661258 | Msa0529870:CDS |
| ATCTGATGATGATTGTTGGT+TGG | 0.460783 | 4_1:+3661326 | None:intergenic |
| GCATCTATCAGCCGGAATAC+CGG | 0.472953 | 4_1:-3659038 | Msa0529870:CDS |
| TAAACTCACAGATGCAAGCT+TGG | 0.474451 | 4_1:-3659627 | Msa0529870:CDS |
| ATGCAAGCTTGGGTATCATC+TGG | 0.498776 | 4_1:-3659616 | Msa0529870:CDS |
| CTTCCAAGTCGAATCTTGTC+CGG | 0.502514 | 4_1:+3659102 | None:intergenic |
| CACAGAGTGATGTAGAGTCT+TGG | 0.506993 | 4_1:-3659681 | Msa0529870:CDS |
| TTCCAGCGTTCAACATTTGG+TGG | 0.512613 | 4_1:-3658652 | Msa0529870:CDS |
| TCACAAGCACAAGCAACACT+AGG | 0.523148 | 4_1:-3658685 | Msa0529870:CDS |
| AATTGGAACCTGTTTGCGAA+GGG | 0.527546 | 4_1:+3661231 | None:intergenic |
| AAACTCACAGATGCAAGCTT+GGG | 0.538296 | 4_1:-3659626 | Msa0529870:CDS |
| CACAAGCACAAGCAACACTA+GGG | 0.539981 | 4_1:-3658684 | Msa0529870:CDS |
| AGACAGACCGTCTGCTCCCG+CGG | 0.542573 | 4_1:+3661369 | None:intergenic |
| GACAGACCGTCTGCTCCCGC+GGG | 0.544853 | 4_1:+3661370 | None:intergenic |
| ATTGTCCCCGCGGGAGCAGA+CGG | 0.547670 | 4_1:-3661376 | Msa0529870:five_prime_UTR |
| ATCTACTGGATAACCAAATG+AGG | 0.561812 | 4_1:-3658015 | Msa0529870:exon |
| GGAGGTACCAACTACTTCAT+GGG | 0.562555 | 4_1:-3661257 | Msa0529870:CDS |
| AGGGAATCCCATGAAGTAGT+TGG | 0.563473 | 4_1:+3661250 | None:intergenic |
| TAATTGGAACCTGTTTGCGA+AGG | 0.570672 | 4_1:+3661230 | None:intergenic |
| TGATATCTTGAAGAATCTCT+TGG | 0.571489 | 4_1:+3659557 | None:intergenic |
| AAGAGAATGCATCTATCAGC+CGG | 0.572204 | 4_1:-3659046 | Msa0529870:CDS |
| TACCTTAATACTTTCCCTTG+TGG | 0.577933 | 4_1:-3658064 | Msa0529870:CDS |
| TGACCGGACAAGATTCGACT+TGG | 0.590350 | 4_1:-3659105 | Msa0529870:CDS |
| ATTCCTGTGCTGCAGATGGA+CGG | 0.597836 | 4_1:-3658715 | Msa0529870:intron |
| GAAAATAATTCGTTTCAACA+TGG | 0.603322 | 4_1:+3657917 | None:intergenic |
| CGTTAGCAGTCGCCTCCCTA+CGG | 0.603946 | 4_1:-3658608 | Msa0529870:intron |
| TGAAGTAGTTGGTACCTCCA+TGG | 0.607254 | 4_1:+3661261 | None:intergenic |
| GTTATTTAGCCCAATAGACA+AGG | 0.615090 | 4_1:+3657945 | None:intergenic |
| ACAAGATTCGACTTGGAAGA+GGG | 0.619688 | 4_1:-3659098 | Msa0529870:CDS |
| TGCCACCAAATGTTGAACGC+TGG | 0.639751 | 4_1:+3658650 | None:intergenic |
| AGAAGCAAAATTGTCCCCGC+GGG | 0.644827 | 4_1:-3661385 | Msa0529870:five_prime_UTR |
| ATGTAGAGTCTTGGATTGAG+CGG | 0.645281 | 4_1:-3659672 | Msa0529870:CDS |
| ATGTGCATACAGATGCCACA+AGG | 0.649541 | 4_1:+3658049 | None:intergenic |
| AGATTCGACTTGGAAGAGGG+TGG | 0.664769 | 4_1:-3659095 | Msa0529870:CDS |
| CAAGCTTGGGTATCATCTGG+CGG | 0.666201 | 4_1:-3659613 | Msa0529870:CDS |
| GATTCTTCAAGATATCACTC+AGG | 0.673183 | 4_1:-3659551 | Msa0529870:intron |
| ATAAGAGACATACCGTAGGG+AGG | 0.681724 | 4_1:+3658596 | None:intergenic |
| TGTGCATACAGATGCCACAA+GGG | 0.686387 | 4_1:+3658050 | None:intergenic |
| ACAAGCACAAGCAACACTAG+GGG | 0.698539 | 4_1:-3658683 | Msa0529870:CDS |
| AAGAAGCAAAATTGTCCCCG+CGG | 0.723695 | 4_1:-3661386 | Msa0529870:five_prime_UTR |
| ACAGACCGTCTGCTCCCGCG+GGG | 0.752082 | 4_1:+3661371 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATCAATTATATGAATATT+AGG | - | chr4_1:3658330-3658349 | Msa0529870:intron | 10.0% |
| !!! | TTTAAATATTTGAAATGTTT+TGG | - | chr4_1:3658662-3658681 | Msa0529870:CDS | 10.0% |
| !! | AATTTACAACTTATAATTAT+AGG | + | chr4_1:3658983-3659002 | None:intergenic | 10.0% |
| !! | TAAATCAAGATATATAAATA+TGG | + | chr4_1:3659276-3659295 | None:intergenic | 10.0% |
| !!! | AAGTTTTGAAAAAAAAAATT+GGG | + | chr4_1:3659843-3659862 | None:intergenic | 10.0% |
| !!! | TAAGTTTTGAAAAAAAAAAT+TGG | + | chr4_1:3659844-3659863 | None:intergenic | 10.0% |
| !! | ACAAAAATATTCAATTCAAT+AGG | + | chr4_1:3657819-3657838 | None:intergenic | 15.0% |
| !!! | ATTGATTTTAACTTGAATAT+AGG | + | chr4_1:3658318-3658337 | None:intergenic | 15.0% |
| !!! | AAAATCGTTTCATATTTTTT+GGG | + | chr4_1:3661463-3661482 | None:intergenic | 15.0% |
| !! | AAACATAAGAAAAGTGAAAA+AGG | - | chr4_1:3657853-3657872 | Msa0529870:three_prime_UTR | 20.0% |
| !!! | TTTTCTCAATTTATCTTTGA+TGG | - | chr4_1:3658166-3658185 | Msa0529870:intron | 20.0% |
| !!! | TAACTTGTAAAGTGATTTTA+TGG | - | chr4_1:3658411-3658430 | Msa0529870:intron | 20.0% |
| !! | AAGATTGTTTAATATATCAC+CGG | + | chr4_1:3659221-3659240 | None:intergenic | 20.0% |
| !! | AACAATCTTGATTTCTAATT+AGG | - | chr4_1:3659232-3659251 | Msa0529870:intron | 20.0% |
| !! | AATAATGATCATAAAAGACT+AGG | - | chr4_1:3659330-3659349 | Msa0529870:intron | 20.0% |
| !!! | TGGAATTGGATATTTTTTAT+TGG | - | chr4_1:3659353-3659372 | Msa0529870:intron | 20.0% |
| !! | AACAATATAGTTTAATCACA+AGG | + | chr4_1:3659790-3659809 | None:intergenic | 20.0% |
| !! | CTTAAATGTAATTAAATTGC+AGG | - | chr4_1:3660068-3660087 | Msa0529870:intron | 20.0% |
| !!! | TTTAAAACTATCATTGTTCT+TGG | - | chr4_1:3660443-3660462 | Msa0529870:intron | 20.0% |
| !!! | AAATTTTAAGCACAGTAAAT+TGG | - | chr4_1:3660800-3660819 | Msa0529870:intron | 20.0% |
| !! | AATTACTGATCAAAATTGAA+TGG | + | chr4_1:3660987-3661006 | None:intergenic | 20.0% |
| !!! | AAATCGTTTCATATTTTTTG+GGG | + | chr4_1:3661462-3661481 | None:intergenic | 20.0% |
| !!! | CAAAATCGTTTCATATTTTT+TGG | + | chr4_1:3661464-3661483 | None:intergenic | 20.0% |
| !!! | TTTTTTTTGTTTTTCAGCCA+TGG | - | chr4_1:3657991-3658010 | Msa0529870:three_prime_UTR | 25.0% |
| ! | AACATAAAAACATGAGAAAG+GGG | + | chr4_1:3658069-3658088 | None:intergenic | 25.0% |
| ! | CAACATAAAAACATGAGAAA+GGG | + | chr4_1:3658070-3658089 | None:intergenic | 25.0% |
| ! | ACAACATAAAAACATGAGAA+AGG | + | chr4_1:3658071-3658090 | None:intergenic | 25.0% |
| ! | AAAATCGAAACTTTAACACA+CGG | + | chr4_1:3658135-3658154 | None:intergenic | 25.0% |
| !! | AAAGTTTCGATTTTTCTTTC+TGG | - | chr4_1:3658141-3658160 | Msa0529870:intron | 25.0% |
| !! | AAGTTTCGATTTTTCTTTCT+GGG | - | chr4_1:3658142-3658161 | Msa0529870:intron | 25.0% |
| ! | AATATTAGGAAAGTTTGATG+AGG | - | chr4_1:3658344-3658363 | Msa0529870:intron | 25.0% |
| !! | GAAATTAAGTCTGAAATGTT+TGG | + | chr4_1:3658474-3658493 | None:intergenic | 25.0% |
| ! | ACATTTCAGACTTAATTTCA+CGG | - | chr4_1:3658475-3658494 | Msa0529870:intron | 25.0% |
| !! | GTTTAAGTTAGAATTCATCA+TGG | - | chr4_1:3658516-3658535 | Msa0529870:intron | 25.0% |
| !! | TGTAAGTTTAATTTCACTCT+AGG | + | chr4_1:3658620-3658639 | None:intergenic | 25.0% |
| ! | AAACTTACACTCATTTCTTA+AGG | - | chr4_1:3658631-3658650 | Msa0529870:CDS | 25.0% |
| ! | TTATTTCGCAGACAAAAATT+AGG | + | chr4_1:3658753-3658772 | None:intergenic | 25.0% |
| !! | TTTTGTCTGCGAAATAAATA+AGG | - | chr4_1:3658756-3658775 | Msa0529870:intron | 25.0% |
| !! | TTGTTTAAAAGTACATGATC+AGG | - | chr4_1:3658827-3658846 | Msa0529870:intron | 25.0% |
| !! | TGTTTAAAAGTACATGATCA+GGG | - | chr4_1:3658828-3658847 | Msa0529870:intron | 25.0% |
| ! | GCATTAGATAGAAACTTTAT+AGG | - | chr4_1:3659040-3659059 | Msa0529870:CDS | 25.0% |
| ! | TGATCATGCTATTATCATTA+GGG | + | chr4_1:3659303-3659322 | None:intergenic | 25.0% |
| ! | ATGATCATGCTATTATCATT+AGG | + | chr4_1:3659304-3659323 | None:intergenic | 25.0% |
| !!! | ATTTTTTATTGGCTTGAAGA+AGG | - | chr4_1:3659364-3659383 | Msa0529870:intron | 25.0% |
| ! | AAATTGGGATTACAAATTTC+AGG | + | chr4_1:3659828-3659847 | None:intergenic | 25.0% |
| !!! | ACGATTTTAAAGAATTTGAC+CGG | - | chr4_1:3660148-3660167 | Msa0529870:intron | 25.0% |
| !! | TGGGAATATATGGATTAAAA+AGG | + | chr4_1:3660315-3660334 | None:intergenic | 25.0% |
| !!! | ACTTGTTATGTTAGAACTTT+CGG | - | chr4_1:3660400-3660419 | Msa0529870:intron | 25.0% |
| ! | CGAATTTCAAAGAAAAACAA+AGG | + | chr4_1:3660499-3660518 | None:intergenic | 25.0% |
| ! | ATTCGATACAATCTTCAATT+TGG | - | chr4_1:3660514-3660533 | Msa0529870:intron | 25.0% |
| ! | TTCGATACAATCTTCAATTT+GGG | - | chr4_1:3660515-3660534 | Msa0529870:intron | 25.0% |
| ! | GATGACTACTACTAAAAAAA+AGG | - | chr4_1:3660758-3660777 | Msa0529870:intron | 25.0% |
| !! | TCTGCTTTGAATAAAATTTC+AGG | - | chr4_1:3661139-3661158 | Msa0529870:intron | 25.0% |
| ! | AATAAAGCGAAAAAAGTCAA+TGG | - | chr4_1:3661181-3661200 | Msa0529870:intron | 25.0% |
| ! | GAAAATAATTCGTTTCAACA+TGG | + | chr4_1:3661355-3661374 | None:intergenic | 25.0% |
| !! | GTTGAAACGAATTATTTTCA+TGG | - | chr4_1:3661356-3661375 | Msa0529870:five_prime_UTR | 25.0% |
| !!! | AATCGTTTCATATTTTTTGG+GGG | + | chr4_1:3661461-3661480 | None:intergenic | 25.0% |
| !! | ATGAAACGATTTTGTGAATT+TGG | - | chr4_1:3661470-3661489 | Msa0529870:five_prime_UTR | 25.0% |
| !! | TGAAACGATTTTGTGAATTT+GGG | - | chr4_1:3661471-3661490 | Msa0529870:five_prime_UTR | 25.0% |
| CATAAGAAAAGTGAAAAAGG+AGG | - | chr4_1:3657856-3657875 | Msa0529870:three_prime_UTR | 30.0% | |
| ! | TTGAATCTGATGATGATTGT+TGG | + | chr4_1:3657950-3657969 | None:intergenic | 30.0% |
| ATGAGAAAGGGGATAATAAT+TGG | + | chr4_1:3658058-3658077 | None:intergenic | 30.0% | |
| AAATCGAAACTTTAACACAC+GGG | + | chr4_1:3658134-3658153 | None:intergenic | 30.0% | |
| CTCAATTTATCTTTGATGGA+TGG | - | chr4_1:3658170-3658189 | Msa0529870:intron | 30.0% | |
| GAGAATGATGAATTCATCAT+TGG | - | chr4_1:3658192-3658211 | Msa0529870:intron | 30.0% | |
| AACATGCACTAAGTTATGAT+AGG | + | chr4_1:3658248-3658267 | None:intergenic | 30.0% | |
| ATCATAACTTAGTGCATGTT+TGG | - | chr4_1:3658248-3658267 | Msa0529870:intron | 30.0% | |
| ! | CTTGTAAAGTGATTTTATGG+TGG | - | chr4_1:3658414-3658433 | Msa0529870:intron | 30.0% |
| ! | AAGTTTAATTTCACTCTAGG+AGG | + | chr4_1:3658617-3658636 | None:intergenic | 30.0% |
| AATTAGGTATACTTCTAACC+TGG | + | chr4_1:3658737-3658756 | None:intergenic | 30.0% | |
| GTACGATAATCTAGTTATCA+TGG | - | chr4_1:3658866-3658885 | Msa0529870:intron | 30.0% | |
| GATAATCTAGTTATCATGGA+TGG | - | chr4_1:3658870-3658889 | Msa0529870:intron | 30.0% | |
| !!! | TTAGGCGTTGTTTTTTTCTT+TGG | - | chr4_1:3659250-3659269 | Msa0529870:intron | 30.0% |
| AATGATCATAAAAGACTAGG+TGG | - | chr4_1:3659333-3659352 | Msa0529870:intron | 30.0% | |
| !!! | GTTGTTTTTATCTTCCTTTC+TGG | - | chr4_1:3659400-3659419 | Msa0529870:intron | 30.0% |
| AAGAAAACTTGAAGCTCAAT+TGG | - | chr4_1:3659502-3659521 | Msa0529870:intron | 30.0% | |
| TCTACCAATCTTTCAACAAA+AGG | - | chr4_1:3659557-3659576 | Msa0529870:CDS | 30.0% | |
| ! | ATCACCTTTTGTTGAAAGAT+TGG | + | chr4_1:3659564-3659583 | None:intergenic | 30.0% |
| TGATATCTTGAAGAATCTCT+TGG | + | chr4_1:3659715-3659734 | None:intergenic | 30.0% | |
| ACTCAGGTATTCAATGTTAA+TGG | - | chr4_1:3659734-3659753 | Msa0529870:CDS | 30.0% | |
| TTAGTGATATTGTAAGCTAG+TGG | - | chr4_1:3659861-3659880 | Msa0529870:intron | 30.0% | |
| AACAACACAGAAAGAACATA+AGG | - | chr4_1:3659906-3659925 | Msa0529870:intron | 30.0% | |
| CGTAGACAATGAACAAAATT+AGG | + | chr4_1:3659939-3659958 | None:intergenic | 30.0% | |
| TTTAATCCATATATTCCCAG+TGG | - | chr4_1:3660316-3660335 | Msa0529870:intron | 30.0% | |
| TTATGTTAGAACTTTCGGAA+TGG | - | chr4_1:3660405-3660424 | Msa0529870:intron | 30.0% | |
| CAGAACATTAAACAAACTAG+AGG | + | chr4_1:3661123-3661142 | None:intergenic | 30.0% | |
| !! | CATTTCTCATTTTGATCTAC+TGG | - | chr4_1:3661240-3661259 | Msa0529870:CDS | 30.0% |
| ATAGACAAGGAACACAAAAA+GGG | + | chr4_1:3661314-3661333 | None:intergenic | 30.0% | |
| AATAGACAAGGAACACAAAA+AGG | + | chr4_1:3661315-3661334 | None:intergenic | 30.0% | |
| ! | TTTTTGTGTTCCTTGTCTAT+TGG | - | chr4_1:3661314-3661333 | Msa0529870:five_prime_UTR | 30.0% |
| ! | TTTTGTGTTCCTTGTCTATT+GGG | - | chr4_1:3661315-3661334 | Msa0529870:five_prime_UTR | 30.0% |
| ! | GAAACGATTTTGTGAATTTG+GGG | - | chr4_1:3661472-3661491 | Msa0529870:five_prime_UTR | 30.0% |
| AAGAAAAGTGAAAAAGGAGG+AGG | - | chr4_1:3657859-3657878 | Msa0529870:three_prime_UTR | 35.0% | |
| AGAAAAGTGAAAAAGGAGGA+GGG | - | chr4_1:3657860-3657879 | Msa0529870:three_prime_UTR | 35.0% | |
| ! | TCTGATGATGATTGTTGGTT+GGG | + | chr4_1:3657945-3657964 | None:intergenic | 35.0% |
| ! | ATCTGATGATGATTGTTGGT+TGG | + | chr4_1:3657946-3657965 | None:intergenic | 35.0% |
| !!! | TTTTTGTTTTTCAGCCATGG+AGG | - | chr4_1:3657994-3658013 | Msa0529870:three_prime_UTR | 35.0% |
| GATCACAGAAAGCAAAAAAG+AGG | + | chr4_1:3658226-3658245 | None:intergenic | 35.0% | |
| ! | ACTTAGTGCATGTTTGGTTT+CGG | - | chr4_1:3658254-3658273 | Msa0529870:intron | 35.0% |
| TGATGAGGTCTTGCAAAAAT+TGG | - | chr4_1:3658359-3658378 | Msa0529870:intron | 35.0% | |
| TTCTCTTACGTAATAGTGAG+TGG | - | chr4_1:3658446-3658465 | Msa0529870:intron | 35.0% | |
| ! | TTTAATTTCACTCTAGGAGG+AGG | + | chr4_1:3658614-3658633 | None:intergenic | 35.0% |
| TGATTTGATGTAGAAATGCC+AGG | - | chr4_1:3658716-3658735 | Msa0529870:intron | 35.0% | |
| GACTCAAATTAACTCTCTGT+AGG | + | chr4_1:3658798-3658817 | None:intergenic | 35.0% | |
| !!! | GGTGTAGGAATTTGGTTTTT+TGG | - | chr4_1:3658891-3658910 | Msa0529870:intron | 35.0% |
| AGTAGTTACTAGAGTTGCAA+TGG | - | chr4_1:3659077-3659096 | Msa0529870:CDS | 35.0% | |
| CATAAAAGACTAGGTGGAAT+TGG | - | chr4_1:3659339-3659358 | Msa0529870:intron | 35.0% | |
| AACTTTCCGTTTCTTAGACA+AGG | - | chr4_1:3659429-3659448 | Msa0529870:intron | 35.0% | |
| ! | TTTTTCCCACAATCTTTTGC+AGG | - | chr4_1:3659478-3659497 | Msa0529870:intron | 35.0% |
| GATTCTTCAAGATATCACTC+AGG | - | chr4_1:3659718-3659737 | Msa0529870:CDS | 35.0% | |
| TGATAGATGCATTCTCTTTC+AGG | + | chr4_1:3660221-3660240 | None:intergenic | 35.0% | |
| TCCTAGCTAACATAACAATG+TGG | + | chr4_1:3660352-3660371 | None:intergenic | 35.0% | |
| AAAGGAATTCTTCGAAAAGC+AGG | + | chr4_1:3660481-3660500 | None:intergenic | 35.0% | |
| GATACAATCTTCAATTTGGG+TGG | - | chr4_1:3660518-3660537 | Msa0529870:intron | 35.0% | |
| ATGATAAGAGACATACCGTA+GGG | + | chr4_1:3660679-3660698 | None:intergenic | 35.0% | |
| !!! | TCTCTTATCATCGTCGATTT+TGG | - | chr4_1:3660688-3660707 | Msa0529870:intron | 35.0% |
| GAATTCCAAACATCAAGATC+TGG | + | chr4_1:3660931-3660950 | None:intergenic | 35.0% | |
| ! | GATCTTGATGTTTGGAATTC+AGG | - | chr4_1:3660931-3660950 | Msa0529870:intron | 35.0% |
| ! | GATGTTTGGAATTCAGGAAA+AGG | - | chr4_1:3660937-3660956 | Msa0529870:intron | 35.0% |
| TTATGTACGCGCTTCAAATT+TGG | - | chr4_1:3661026-3661045 | Msa0529870:intron | 35.0% | |
| TACCTTAATACTTTCCCTTG+TGG | - | chr4_1:3661205-3661224 | Msa0529870:intron | 35.0% | |
| ATCTACTGGATAACCAAATG+AGG | - | chr4_1:3661254-3661273 | Msa0529870:CDS | 35.0% | |
| CCAAAATATACAGCCTCATT+TGG | + | chr4_1:3661270-3661289 | None:intergenic | 35.0% | |
| ! | CCAAATGAGGCTGTATATTT+TGG | - | chr4_1:3661267-3661286 | Msa0529870:exon | 35.0% |
| !!! | ATGAGGCTGTATATTTTGGT+TGG | - | chr4_1:3661271-3661290 | Msa0529870:exon | 35.0% |
| GTTATTTAGCCCAATAGACA+AGG | + | chr4_1:3661327-3661346 | None:intergenic | 35.0% | |
| !!! | TCAGTGTTGCTTTTGTTACA+AGG | + | chr4_1:3661415-3661434 | None:intergenic | 35.0% |
| !! | TTTGGGGGAGTGTTAATATA+TGG | + | chr4_1:3661446-3661465 | None:intergenic | 35.0% |
| ! | TGATGATTGTTGGTTGGGTT+GGG | + | chr4_1:3657940-3657959 | None:intergenic | 40.0% |
| ! | ATGATGATTGTTGGTTGGGT+TGG | + | chr4_1:3657941-3657960 | None:intergenic | 40.0% |
| AATTGGAACCTGTTTGCGAA+GGG | + | chr4_1:3658041-3658060 | None:intergenic | 40.0% | |
| TAATTGGAACCTGTTTGCGA+AGG | + | chr4_1:3658042-3658061 | None:intergenic | 40.0% | |
| ! | CTTAGTGCATGTTTGGTTTC+GGG | - | chr4_1:3658255-3658274 | Msa0529870:intron | 40.0% |
| ! | TTAGTGCATGTTTGGTTTCG+GGG | - | chr4_1:3658256-3658275 | Msa0529870:intron | 40.0% |
| TTGGATGAGAATCTGTTGCT+AGG | - | chr4_1:3658681-3658700 | Msa0529870:CDS | 40.0% | |
| GAGAATCTGTTGCTAGGTTT+AGG | - | chr4_1:3658687-3658706 | Msa0529870:CDS | 40.0% | |
| CTAGTTATCATGGATGGTGT+AGG | - | chr4_1:3658876-3658895 | Msa0529870:intron | 40.0% | |
| TCATGGATGGTGTAGGAATT+TGG | - | chr4_1:3658883-3658902 | Msa0529870:intron | 40.0% | |
| ! | CAATGGAAAGCATGCAATTC+TGG | - | chr4_1:3659094-3659113 | Msa0529870:CDS | 40.0% |
| ! | GGAAAGTTTTCTTGCCAGAA+AGG | + | chr4_1:3659417-3659436 | None:intergenic | 40.0% |
| TCTTGCCTGCAAAAGATTGT+GGG | + | chr4_1:3659486-3659505 | None:intergenic | 40.0% | |
| TTCTTGCCTGCAAAAGATTG+TGG | + | chr4_1:3659487-3659506 | None:intergenic | 40.0% | |
| ATGTAGAGTCTTGGATTGAG+CGG | - | chr4_1:3659597-3659616 | Msa0529870:CDS | 40.0% | |
| GCATCTGTGAGTTTACTTGT+TGG | + | chr4_1:3659637-3659656 | None:intergenic | 40.0% | |
| TAAACTCACAGATGCAAGCT+TGG | - | chr4_1:3659642-3659661 | Msa0529870:CDS | 40.0% | |
| AAACTCACAGATGCAAGCTT+GGG | - | chr4_1:3659643-3659662 | Msa0529870:CDS | 40.0% | |
| !! | ACAAGATTCGACTTGGAAGA+GGG | - | chr4_1:3660171-3660190 | Msa0529870:intron | 40.0% |
| AAGAGAATGCATCTATCAGC+CGG | - | chr4_1:3660223-3660242 | Msa0529870:intron | 40.0% | |
| ! | TTTTGCATCACTGACATGTC+CGG | + | chr4_1:3660253-3660272 | None:intergenic | 40.0% |
| AGCATTCCACTGGGAATATA+TGG | + | chr4_1:3660325-3660344 | None:intergenic | 40.0% | |
| GCCACATTGTTATGTTAGCT+AGG | - | chr4_1:3660348-3660367 | Msa0529870:intron | 40.0% | |
| !! | CAATTTGGGTGGTCTTATTC+TGG | - | chr4_1:3660529-3660548 | Msa0529870:intron | 40.0% |
| GATGATAAGAGACATACCGT+AGG | + | chr4_1:3660680-3660699 | None:intergenic | 40.0% | |
| GCATATGTGAATGGCGAAAA+GGG | + | chr4_1:3660728-3660747 | None:intergenic | 40.0% | |
| TTCAGTCTCGCATATGTGAA+TGG | + | chr4_1:3660737-3660756 | None:intergenic | 40.0% | |
| AACTCGAAATATGAGCTGTG+TGG | - | chr4_1:3660837-3660856 | Msa0529870:intron | 40.0% | |
| ! | GCTGTGTGGTCTTGATTAAA+TGG | - | chr4_1:3660851-3660870 | Msa0529870:intron | 40.0% |
| GGAATCCAGATCTTGATGTT+TGG | - | chr4_1:3660923-3660942 | Msa0529870:intron | 40.0% | |
| TGCTCAAGCAATCCTACAAT+CGG | + | chr4_1:3661086-3661105 | None:intergenic | 40.0% | |
| TTGTAGGATTGCTTGAGCAT+AGG | - | chr4_1:3661087-3661106 | Msa0529870:intron | 40.0% | |
| TGCTTGAGCATAGGTAATTC+AGG | - | chr4_1:3661096-3661115 | Msa0529870:intron | 40.0% | |
| !! | TGCCACAAGGGAAAGTATTA+AGG | + | chr4_1:3661210-3661229 | None:intergenic | 40.0% |
| AAGAAGCAAAATTGTCCCCG+CGG | - | chr4_1:3657883-3657902 | Msa0529870:three_prime_UTR | 45.0% | |
| ! | TGAAGTAGTTGGTACCTCCA+TGG | + | chr4_1:3658011-3658030 | None:intergenic | 45.0% |
| !! | TGGAGGTACCAACTACTTCA+TGG | - | chr4_1:3658011-3658030 | Msa0529870:exon | 45.0% |
| !! | GGAGGTACCAACTACTTCAT+GGG | - | chr4_1:3658012-3658031 | Msa0529870:exon | 45.0% |
| AGGGAATCCCATGAAGTAGT+TGG | + | chr4_1:3658022-3658041 | None:intergenic | 45.0% | |
| !!! | TTTTTTTGGATGCCGAGTCC+CGG | - | chr4_1:3659183-3659202 | Msa0529870:intron | 45.0% |
| TATTCCATTACACCGGGACT+CGG | + | chr4_1:3659198-3659217 | None:intergenic | 45.0% | |
| TCACCGGTATTCCATTACAC+CGG | + | chr4_1:3659205-3659224 | None:intergenic | 45.0% | |
| TGCTCGCCTTGTCTAAGAAA+CGG | + | chr4_1:3659438-3659457 | None:intergenic | 45.0% | |
| CACAGAGTGATGTAGAGTCT+TGG | - | chr4_1:3659588-3659607 | Msa0529870:CDS | 45.0% | |
| ATGCAAGCTTGGGTATCATC+TGG | - | chr4_1:3659653-3659672 | Msa0529870:CDS | 45.0% | |
| CTTCCAAGTCGAATCTTGTC+CGG | + | chr4_1:3660170-3660189 | None:intergenic | 45.0% | |
| !! | GACAAGATTCGACTTGGAAG+AGG | - | chr4_1:3660170-3660189 | Msa0529870:intron | 45.0% |
| ! | TGTGGCTAAAGCATTCCACT+GGG | + | chr4_1:3660334-3660353 | None:intergenic | 45.0% |
| ! | ATGTGGCTAAAGCATTCCAC+TGG | + | chr4_1:3660335-3660354 | None:intergenic | 45.0% |
| TCACAAGCACAAGCAACACT+AGG | - | chr4_1:3660584-3660603 | Msa0529870:intron | 45.0% | |
| CACAAGCACAAGCAACACTA+GGG | - | chr4_1:3660585-3660604 | Msa0529870:intron | 45.0% | |
| ACAAGCACAAGCAACACTAG+GGG | - | chr4_1:3660586-3660605 | Msa0529870:intron | 45.0% | |
| GTCTTCCAGCGTTCAACATT+TGG | - | chr4_1:3660614-3660633 | Msa0529870:intron | 45.0% | |
| TTCCAGCGTTCAACATTTGG+TGG | - | chr4_1:3660617-3660636 | Msa0529870:intron | 45.0% | |
| ATAAGAGACATACCGTAGGG+AGG | + | chr4_1:3660676-3660695 | None:intergenic | 45.0% | |
| CGCATATGTGAATGGCGAAA+AGG | + | chr4_1:3660729-3660748 | None:intergenic | 45.0% | |
| ATGCAGGAAATTCGTGCAGT+CGG | + | chr4_1:3660890-3660909 | None:intergenic | 45.0% | |
| TGGATGAAATCTGTGACTGC+AGG | + | chr4_1:3660967-3660986 | None:intergenic | 45.0% | |
| CAATCCTACAATCGGTGCAT+TGG | + | chr4_1:3661078-3661097 | None:intergenic | 45.0% | |
| TGTGCATACAGATGCCACAA+GGG | + | chr4_1:3661222-3661241 | None:intergenic | 45.0% | |
| ATGTGCATACAGATGCCACA+AGG | + | chr4_1:3661223-3661242 | None:intergenic | 45.0% | |
| !!! | ATTTTTTAATATAGTTTTTT+TGG | - | chr4_1:3659169-3659188 | Msa0529870:CDS | 5.0% |
| AGAAGCAAAATTGTCCCCGC+GGG | - | chr4_1:3657884-3657903 | Msa0529870:three_prime_UTR | 50.0% | |
| ATGGGATTCCCTTCGCAAAC+AGG | - | chr4_1:3658030-3658049 | Msa0529870:CDS | 50.0% | |
| ! | GTCCCGGTGTAATGGAATAC+CGG | - | chr4_1:3659199-3659218 | Msa0529870:intron | 50.0% |
| CACCGGTATTCCATTACACC+GGG | + | chr4_1:3659204-3659223 | None:intergenic | 50.0% | |
| CAAGCTTGGGTATCATCTGG+CGG | - | chr4_1:3659656-3659675 | Msa0529870:CDS | 50.0% | |
| ATCATCTGGCGGCTCAGATA+TGG | - | chr4_1:3659667-3659686 | Msa0529870:CDS | 50.0% | |
| TGACCGGACAAGATTCGACT+TGG | - | chr4_1:3660164-3660183 | Msa0529870:intron | 50.0% | |
| !! | AGATTCGACTTGGAAGAGGG+TGG | - | chr4_1:3660174-3660193 | Msa0529870:intron | 50.0% |
| GCATCTATCAGCCGGAATAC+CGG | - | chr4_1:3660231-3660250 | Msa0529870:intron | 50.0% | |
| CACTGACATGTCCGGTATTC+CGG | + | chr4_1:3660245-3660264 | None:intergenic | 50.0% | |
| GGTTATTCCTGTGCTGCAGA+TGG | - | chr4_1:3660550-3660569 | Msa0529870:intron | 50.0% | |
| ATTCCTGTGCTGCAGATGGA+CGG | - | chr4_1:3660554-3660573 | Msa0529870:intron | 50.0% | |
| TGCCACCAAATGTTGAACGC+TGG | + | chr4_1:3660622-3660641 | None:intergenic | 50.0% | |
| ! | TTCCTGCATTTTCCGACTGC+AGG | - | chr4_1:3660901-3660920 | Msa0529870:intron | 50.0% |
| ! | TCCTGCATTTTCCGACTGCA+GGG | - | chr4_1:3660902-3660921 | Msa0529870:intron | 50.0% |
| AGATCTGGATTCCCTGCAGT+CGG | + | chr4_1:3660916-3660935 | None:intergenic | 50.0% | |
| !! | ACCTCCAATGCACCGATTGT+AGG | - | chr4_1:3661071-3661090 | Msa0529870:intron | 50.0% |
| TCCTACAATCGGTGCATTGG+AGG | + | chr4_1:3661075-3661094 | None:intergenic | 50.0% | |
| TCCCTGCAGTCGGAAAATGC+AGG | + | chr4_1:3660906-3660925 | None:intergenic | 55.0% | |
| GATGCCGAGTCCCGGTGTAA+TGG | - | chr4_1:3659191-3659210 | Msa0529870:intron | 60.0% | |
| ACACCGTCCATCTGCAGCAC+AGG | + | chr4_1:3660560-3660579 | None:intergenic | 60.0% | |
| CGTTAGCAGTCGCCTCCCTA+CGG | - | chr4_1:3660661-3660680 | Msa0529870:intron | 60.0% | |
| ATTGTCCCCGCGGGAGCAGA+CGG | - | chr4_1:3657893-3657912 | Msa0529870:three_prime_UTR | 65.0% | |
| AGACAGACCGTCTGCTCCCG+CGG | + | chr4_1:3657903-3657922 | None:intergenic | 65.0% | |
| ACAGACCGTCTGCTCCCGCG+GGG | + | chr4_1:3657901-3657920 | None:intergenic | 70.0% | |
| GACAGACCGTCTGCTCCCGC+GGG | + | chr4_1:3657902-3657921 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 3657785 | 3661506 | 3657785 | ID=Msa0529870;Name=Msa0529870 |
| chr4_1 | mRNA | 3657785 | 3661506 | 3657785 | ID=Msa0529870-mRNA-1;Parent=Msa0529870;Name=Msa0529870-mRNA-1;_AED=0.02;_eAED=0.02;_QI=225|1|1|1|0.75|0.8|5|232|225 |
| chr4_1 | exon | 3657785 | 3658130 | 3657785 | ID=Msa0529870-mRNA-1:exon:1072;Parent=Msa0529870-mRNA-1 |
| chr4_1 | exon | 3658609 | 3658722 | 3658609 | ID=Msa0529870-mRNA-1:exon:1071;Parent=Msa0529870-mRNA-1 |
| chr4_1 | exon | 3659034 | 3659201 | 3659034 | ID=Msa0529870-mRNA-1:exon:1070;Parent=Msa0529870-mRNA-1 |
| chr4_1 | exon | 3659552 | 3659791 | 3659552 | ID=Msa0529870-mRNA-1:exon:1069;Parent=Msa0529870-mRNA-1 |
| chr4_1 | exon | 3661240 | 3661506 | 3661240 | ID=Msa0529870-mRNA-1:exon:1068;Parent=Msa0529870-mRNA-1 |
| chr4_1 | five_prime_UTR | 3661282 | 3661506 | 3661282 | ID=Msa0529870-mRNA-1:five_prime_utr;Parent=Msa0529870-mRNA-1 |
| chr4_1 | CDS | 3661240 | 3661281 | 3661240 | ID=Msa0529870-mRNA-1:cds;Parent=Msa0529870-mRNA-1 |
| chr4_1 | CDS | 3659552 | 3659791 | 3659552 | ID=Msa0529870-mRNA-1:cds;Parent=Msa0529870-mRNA-1 |
| chr4_1 | CDS | 3659034 | 3659201 | 3659034 | ID=Msa0529870-mRNA-1:cds;Parent=Msa0529870-mRNA-1 |
| chr4_1 | CDS | 3658609 | 3658722 | 3658609 | ID=Msa0529870-mRNA-1:cds;Parent=Msa0529870-mRNA-1 |
| chr4_1 | CDS | 3658017 | 3658130 | 3658017 | ID=Msa0529870-mRNA-1:cds;Parent=Msa0529870-mRNA-1 |
| chr4_1 | three_prime_UTR | 3657785 | 3658016 | 3657785 | ID=Msa0529870-mRNA-1:three_prime_utr;Parent=Msa0529870-mRNA-1 |
| Gene Sequence |
| Protein sequence |
