AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0530290


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0530290 MtrunA17_Chr4g0003161 95.766 496 9 1 78 561 1 496 0.0 979
Msa0530290 MtrunA17_Chr4g0003161 90.361 83 8 0 1 83 1 83 3.33e-40 152
Msa0530290 MtrunA17_Chr2g0333241 74.442 493 90 3 78 558 1 469 0.0 744
Msa0530290 MtrunA17_Chr2g0333241 68.675 83 26 0 1 83 1 83 1.25e-29 122
Msa0530290 MtrunA17_Chr7g0253251 47.561 328 99 11 94 402 1 274 7.53e-77 245
Msa0530290 MtrunA17_Chr7g0253151 66.443 149 38 3 260 402 5 147 1.83e-55 184
Msa0530290 MtrunA17_Chr7g0266491 27.660 470 314 6 74 526 62 522 4.14e-55 195
Msa0530290 MtrunA17_Chr7g0253161 44.048 168 64 4 78 241 1 142 7.05e-35 129
Msa0530290 MtrunA17_Chr7g0253161 47.561 82 36 2 1 78 1 79 5.88e-16 75.9
Msa0530290 MtrunA17_Chr8g0350161 29.299 314 206 4 73 372 57 368 7.05e-33 129
Msa0530290 MtrunA17_Chr4g0073891 31.088 193 122 2 191 372 438 630 2.56e-25 110
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0530290 AT1G48900.1 84.787 493 63 1 78 558 1 493 0.0 874
Msa0530290 AT1G48900.1 74.699 83 21 0 1 83 1 83 3.18e-33 133
Msa0530290 AT5G49500.1 74.849 497 111 2 78 560 1 497 0.0 763
Msa0530290 AT5G49500.1 69.880 83 25 0 1 83 1 83 2.72e-30 124
Msa0530290 AT1G15310.1 75.052 485 93 4 78 550 1 469 0.0 739
Msa0530290 AT1G15310.1 73.494 83 22 0 1 83 1 83 4.35e-30 124
Msa0530290 AT1G48900.2 82.558 430 60 3 78 495 1 427 0.0 735
Msa0530290 AT1G48900.2 74.699 83 21 0 1 83 1 83 1.44e-33 133
Msa0530290 AT5G49500.2 77.027 370 73 1 203 560 6 375 0.0 590
Msa0530290 AT5G03940.1 28.868 433 284 6 66 480 62 488 5.81e-55 195
Msa0530290 AT5G66970.1 43.293 164 90 2 78 241 1 161 5.09e-34 127
Msa0530290 AT2G45770.1 29.430 316 203 5 73 372 54 365 1.09e-31 126
Msa0530290 AT4G30600.2 31.088 193 122 2 191 372 441 633 4.62e-25 110
Msa0530290 AT4G30600.1 31.088 193 122 2 191 372 441 633 4.62e-25 110

Find 126 sgRNAs with CRISPR-Local

Find 499 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTATTACTTTGCAGCTATA+TGG 0.228796 4_1:-4328654 Msa0530290:intron
ATTAACAATCTTCTTAATAT+TGG 0.234181 4_1:+4333466 None:intergenic
ATTAACAATCTTCTTAATAT+TGG 0.234181 4_1:+4334930 None:intergenic
AAGATGGTGCTCGCGGATTT+AGG 0.260211 4_1:-4333629 Msa0530290:CDS
AAGATGGTGCTCGCAGATTT+AGG 0.261055 4_1:-4335093 Msa0530290:CDS
CCATTTGTCAGTCGTCTATT+AGG 0.261155 4_1:-4328015 Msa0530290:intron
CGTGACTCATTCATGAGCTT+TGG 0.261469 4_1:+4327206 None:intergenic
GAACTCATTTCTCCCTTCTT+TGG 0.270678 4_1:+4327071 None:intergenic
TCAGGCCAGGGAGACTTGTC+TGG 0.286825 4_1:-4327815 Msa0530290:intron
GGAGTGAAAGCGGGCTTTCC+AGG 0.287292 4_1:+4330982 None:intergenic
CTGTCCTGATCCTTGCCTTT+TGG 0.304349 4_1:+4327420 None:intergenic
GAGGTTCTGGTCGACAAGTT+AGG 0.324653 4_1:-4327166 Msa0530290:CDS
GAAATCGATGGGATCTAATA+AGG 0.327013 4_1:-4326952 Msa0530290:CDS
GGCGAGCAGTAGGTTCTTAA+TGG 0.328753 4_1:-4326903 Msa0530290:exon
TGCAGCTTATTAAGCAGTTC+AGG 0.332627 4_1:+4327749 None:intergenic
CAACACTCTGTTTAAATGCT+TGG 0.344126 4_1:+4328343 None:intergenic
CCACAGATGCTAAAGCAAAT+TGG 0.344130 4_1:-4327002 Msa0530290:CDS
ATGCGTATAGCTCGAGGTTC+TGG 0.344763 4_1:-4327179 Msa0530290:CDS
GTGACTCATTCATGAGCTTT+GGG 0.360788 4_1:+4327207 None:intergenic
AATCTTGATGATCTTGTTGC+TGG 0.360807 4_1:-4334910 Msa0530290:CDS
AAAGCTAAGATCCCTTTCTA+TGG 0.370177 4_1:-4330520 Msa0530290:CDS
ATACCGTTGCTTCCGAAACT+TGG 0.375298 4_1:+4328507 None:intergenic
GTAATCTATGCAGTTTGAAT+TGG 0.391907 4_1:-4326810 Msa0530290:three_prime_UTR
TGAAGAAATGCGCCAAGTTT+CGG 0.395551 4_1:-4328519 Msa0530290:CDS
GACATTCATGTTTCGAGATA+AGG 0.395944 4_1:+4327049 None:intergenic
GATCCATTGGAACAACTTCA+TGG 0.399514 4_1:+4327777 None:intergenic
CTGATTCACAACAAATACTT+TGG 0.402378 4_1:+4326636 None:intergenic
AACACTCTGTTTAAATGCTT+GGG 0.406606 4_1:+4328344 None:intergenic
ATAGAAAGGGATCTTAGCTT+TGG 0.412663 4_1:+4330522 None:intergenic
CAATGAGCTCTGCAATATCT+TGG 0.413074 4_1:-4331007 Msa0530290:CDS
GTTTCAGAATATTCTTAAGA+TGG 0.414472 4_1:-4327690 Msa0530290:CDS
GTCATGTTTGTTGGTTTACA+AGG 0.417327 4_1:-4330937 Msa0530290:intron
CCTGTCATATTCATTGGAAC+TGG 0.418342 4_1:-4328075 Msa0530290:CDS
AAGGACATGATGGGAATGTT+TGG 0.422905 4_1:-4326933 Msa0530290:CDS
GCTAGTGTTGTCATGTTTGT+TGG 0.423842 4_1:-4330946 Msa0530290:CDS
AAGAGTCCTGTCATATTCAT+TGG 0.428242 4_1:-4328081 Msa0530290:CDS
ATGGGAATGTTTGGCGGCGG+TGG 0.436163 4_1:-4326924 Msa0530290:CDS
ACAAGCGTCTCGCAAAGATA+TGG 0.438419 4_1:-4327118 Msa0530290:CDS
CCAATTTGCTTTAGCATCTG+TGG 0.443903 4_1:+4327002 None:intergenic
GGCAATGAATTAATACCAAA+AGG 0.444277 4_1:-4327435 Msa0530290:CDS
CTGCCAAGGTAATTAACTAA+TGG 0.444851 4_1:+4326741 None:intergenic
TTTATCATCAAAAGAAAGGC+TGG 0.445583 4_1:-4330612 Msa0530290:CDS
TAGGGAAGTAATGGAGATGA+TGG 0.449379 4_1:-4327147 Msa0530290:CDS
TTTGTCATGGATAGCAGTAT+TGG 0.450799 4_1:-4328387 Msa0530290:CDS
TTAAACAGAGTGTTGCAGTT+GGG 0.452491 4_1:-4328335 Msa0530290:CDS
AGGTTCTGGTCGACAAGTTA+GGG 0.462023 4_1:-4327165 Msa0530290:CDS
ATTAATTCATTGCCAAATCC+TGG 0.467166 4_1:+4327444 None:intergenic
TAGTAAATATACAGCAATTG+AGG 0.468692 4_1:+4326674 None:intergenic
AGGGCTTAAAATACCAAAGA+AGG 0.470429 4_1:-4327084 Msa0530290:CDS
AGATCTTGTTATCTTTGTCA+TGG 0.480044 4_1:-4328400 Msa0530290:CDS
TTTCAGAATATTCTTAAGAT+GGG 0.482656 4_1:-4327689 Msa0530290:CDS
TTGTTGCTGGTCATAATAAA+CGG 0.482807 4_1:-4334897 Msa0530290:CDS
AATACCAAAAGGCAAGGATC+AGG 0.483853 4_1:-4327424 Msa0530290:CDS
CATGGATAGCAGTATTGGTC+AGG 0.485878 4_1:-4328382 Msa0530290:CDS
ATGACAAAGATAACAAGATC+TGG 0.486961 4_1:+4328402 None:intergenic
GGGATCTAATAAGGACATGA+TGG 0.488421 4_1:-4326943 Msa0530290:CDS
CTCTGCAATATCTTGGATCC+TGG 0.490760 4_1:-4331000 Msa0530290:CDS
CAAGACTACCTTCCATAGAA+AGG 0.491497 4_1:+4330508 None:intergenic
CTTATAATTGTTGATACTAG+TGG 0.492017 4_1:-4328569 Msa0530290:CDS
AATCTTGATGATCTTGCTGC+TGG 0.492553 4_1:-4333446 Msa0530290:CDS
CTAAAGCAAATTGGAGGAAT+GGG 0.493593 4_1:-4326993 Msa0530290:CDS
TGGCGGCGGTGGCGAGCAGT+AGG 0.495152 4_1:-4326913 Msa0530290:exon
GTACATAATCCTCAAGGTAA+AGG 0.502143 4_1:+4327718 None:intergenic
TAAACAGAGTGTTGCAGTTG+GGG 0.502364 4_1:-4328334 Msa0530290:CDS
AGTAAATATACAGCAATTGA+GGG 0.509697 4_1:+4326675 None:intergenic
AGGCAAGGATCAGGACAGCC+AGG 0.513089 4_1:-4327415 Msa0530290:CDS
GCTAAAGCAAATTGGAGGAA+TGG 0.513724 4_1:-4326994 Msa0530290:CDS
AGTTCAGGCTGTTGATCCAT+TGG 0.517338 4_1:+4327764 None:intergenic
CCTAATAGACGACTGACAAA+TGG 0.523880 4_1:+4328015 None:intergenic
CAGGCCAGGGAGACTTGTCT+GGG 0.527597 4_1:-4327814 Msa0530290:CDS
TTATAATTGTTGATACTAGT+GGG 0.532166 4_1:-4328568 Msa0530290:CDS
GAACTTCTCTCCACAGGAGA+AGG 0.533313 4_1:-4326570 Msa0530290:three_prime_UTR
AAGACTACCTTCCATAGAAA+GGG 0.535158 4_1:+4330509 None:intergenic
AATCCATGAAGTTGTTCCAA+TGG 0.540168 4_1:-4327780 Msa0530290:CDS
AAAATGGATGGCCATGCAAA+GGG 0.540546 4_1:-4328297 Msa0530290:CDS
GATGGCCATGCAAAGGGTGG+TGG 0.543431 4_1:-4328291 Msa0530290:CDS
CTAAGATCCCTTTCTATGGA+AGG 0.547864 4_1:-4330516 Msa0530290:intron
CCAGTTCCAATGAATATGAC+AGG 0.549067 4_1:+4328075 None:intergenic
AAGATATGGAGCAAAATGAA+AGG 0.553586 4_1:-4327104 Msa0530290:CDS
GCGCACCACCACCCTTTGCA+TGG 0.554323 4_1:+4328286 None:intergenic
GTATCTGCACATACTAGAGC+TGG 0.555721 4_1:+4330586 None:intergenic
GGGCCATTAGTTAATTACCT+TGG 0.556737 4_1:-4326744 Msa0530290:three_prime_UTR
ACAAAGCTTGATGAAATCGA+TGG 0.558585 4_1:-4326964 Msa0530290:CDS
TCTGACCGCAGAAATCTCAA+TGG 0.560687 4_1:-4326765 Msa0530290:three_prime_UTR
TGAACCCAGACAAGTCTCCC+TGG 0.565640 4_1:+4327810 None:intergenic
GAACTCTTATGAAGCACAAG+AGG 0.565713 4_1:+4326846 None:intergenic
AGATATGGAGCAAAATGAAA+GGG 0.567829 4_1:-4327103 Msa0530290:CDS
GACATGATGGGAATGTTTGG+CGG 0.570743 4_1:-4326930 Msa0530290:CDS
TTTAAACAGAGTGTTGCAGT+TGG 0.570851 4_1:-4328336 Msa0530290:CDS
CTGACCGCAGAAATCTCAAT+GGG 0.574030 4_1:-4326764 Msa0530290:three_prime_UTR
TCGACAAGTTAGGGAAGTAA+TGG 0.575282 4_1:-4327156 Msa0530290:CDS
TAAATCGAACTTCTCTCCAC+AGG 0.577966 4_1:-4326576 Msa0530290:three_prime_UTR
TGAATTAATACCAAAAGGCA+AGG 0.579961 4_1:-4327430 Msa0530290:CDS
CATTGGAACTGGAGAACACA+TGG 0.583180 4_1:-4328064 Msa0530290:CDS
CTGCTTAATAAGCTGCAAGA+AGG 0.584033 4_1:-4327743 Msa0530290:CDS
CAAAGCTTGATGAAATCGAT+GGG 0.588981 4_1:-4326963 Msa0530290:CDS
GGATCTAATAAGGACATGAT+GGG 0.588990 4_1:-4326942 Msa0530290:CDS
AACAAGCTTGAATTGAACAT+CGG 0.590449 4_1:+4333502 None:intergenic
TAATGGCTTATGCGCTGCCG+AGG 0.595769 4_1:-4326886 Msa0530290:three_prime_UTR
ATTTGCTTTAGCATCTGTGG+AGG 0.599015 4_1:+4327005 None:intergenic
ATGGTGCTCGCGGATTTAGG+AGG 0.600585 4_1:-4333626 Msa0530290:CDS
TGTGCAGATACATTCAGAGC+TGG 0.600759 4_1:-4330574 Msa0530290:CDS
AAGCAAATTGGAGGAATGGG+TGG 0.601558 4_1:-4326990 Msa0530290:CDS
CAGATGCTAAAGCAAATTGG+AGG 0.603876 4_1:-4326999 Msa0530290:CDS
GCGCCAAGTTTCGGAAGCAA+CGG 0.608253 4_1:-4328510 Msa0530290:intron
GGGCTTAAAATACCAAAGAA+GGG 0.608894 4_1:-4327083 Msa0530290:CDS
TTTGCTTTAGCATCTGTGGA+GGG 0.610701 4_1:+4327006 None:intergenic
GCTTTAGCATCTGTGGAGGG+AGG 0.611539 4_1:+4327009 None:intergenic
AGCAAATTGGAGGAATGGGT+GGG 0.615310 4_1:-4326989 Msa0530290:CDS
AAGAAGGAACCTTTACCTTG+AGG 0.616437 4_1:-4327727 Msa0530290:CDS
ATGGTGCTCGCAGATTTAGG+AGG 0.616535 4_1:-4335090 Msa0530290:CDS
CTGCTCGTACATAATCCTCA+AGG 0.625136 4_1:+4327712 None:intergenic
TGGTGCTCGCGGATTTAGGA+GGG 0.628314 4_1:-4333625 Msa0530290:CDS
CTTGATCAAGATGGTGCTCG+CGG 0.629888 4_1:-4333636 Msa0530290:intron
ATGATGGGAATGTTTGGCGG+CGG 0.634083 4_1:-4326927 Msa0530290:CDS
TAAGATGGGTCCCATGAGCG+AGG 0.637224 4_1:-4327675 Msa0530290:intron
CAAAGCTCATGAATGAGTCA+CGG 0.644435 4_1:-4327205 Msa0530290:CDS
TGGTGCTCGCAGATTTAGGA+GGG 0.645588 4_1:-4335089 Msa0530290:CDS
TGAGTATGAACCTTCTCCTG+TGG 0.659601 4_1:+4326560 None:intergenic
CCTGTGAAAATTGCTGTGGA+AGG 0.664105 4_1:-4328623 Msa0530290:CDS
AGATCCTGTGAAAATTGCTG+TGG 0.670741 4_1:-4328627 Msa0530290:CDS
ATGGCCCATTGAGATTTCTG+CGG 0.681516 4_1:+4326760 None:intergenic
ATGGATGGCCATGCAAAGGG+TGG 0.687249 4_1:-4328294 Msa0530290:CDS
CGGATGATGCGTATAGCTCG+AGG 0.687350 4_1:-4327185 Msa0530290:CDS
TAATTGTTGATACTAGTGGG+CGG 0.701070 4_1:-4328565 Msa0530290:CDS
AAGTAATCAGAAACAAACCT+CGG 0.701173 4_1:+4326869 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATTGTTTTTTTTTTAAGA+AGG - chr4_1:4332307-4332326 Msa0530290:intron 10.0%
!!! AATTGTTTTTTTTTTAAGAA+GGG - chr4_1:4332308-4332327 Msa0530290:intron 10.0%
!! AATTATATTAAACATAATAG+GGG + chr4_1:4334004-4334023 None:intergenic 10.0%
!! ATTAACAATCTTCTTAATAT+TGG + chr4_1:4326721-4326740 None:intergenic 15.0%
!! TGATAAACCAAATAAAATAT+TGG + chr4_1:4326813-4326832 None:intergenic 15.0%
!! ATTAACAATCTTCTTAATAT+TGG + chr4_1:4326721-4326740 None:intergenic 15.0%
!! AAACTATAAGAAAATTACAT+TGG + chr4_1:4329660-4329679 None:intergenic 15.0%
!! CATTGAAAATAAATAGTAAT+AGG + chr4_1:4330924-4330943 None:intergenic 15.0%
!!! CTATTACTATTTATTTTCAA+TGG - chr4_1:4330922-4330941 Msa0530290:intron 15.0%
!! ATAAAACAATATTAATCTGA+AGG + chr4_1:4331382-4331401 None:intergenic 15.0%
!!! TTGTTTTGTTATTTGAATTT+GGG - chr4_1:4331872-4331891 Msa0530290:intron 15.0%
!!! ATTGTTTTTTTTTTAAGAAG+GGG - chr4_1:4332309-4332328 Msa0530290:intron 15.0%
!!! AAAGAATGCTTTTTAATTTT+TGG + chr4_1:4332800-4332819 None:intergenic 15.0%
!! AAATATAATAGGATTATATC+AGG + chr4_1:4333405-4333424 None:intergenic 15.0%
!! AACATCATATTTATATAAGT+TGG + chr4_1:4333441-4333460 None:intergenic 15.0%
!! ATTATATTAAACATAATAGG+GGG + chr4_1:4334003-4334022 None:intergenic 15.0%
!!! TCTTTCTCCAATATTTTATT+TGG - chr4_1:4326803-4326822 Msa0530290:three_prime_UTR 20.0%
!! AGAAAATTGTAACATTTAGA+AGG + chr4_1:4327210-4327229 None:intergenic 20.0%
!! TAATCAACATTAACATTTGA+AGG + chr4_1:4327318-4327337 None:intergenic 20.0%
!! AAATTCACTCAAAAAAAAAG+AGG + chr4_1:4328268-4328287 None:intergenic 20.0%
!!! TTTTGAGTATATATCTAACT+AGG - chr4_1:4328585-4328604 Msa0530290:CDS 20.0%
!! TGATGAAATAAATAGTTTGA+GGG - chr4_1:4328649-4328668 Msa0530290:intron 20.0%
!! TTGATTGTGTAAAATTATTC+TGG - chr4_1:4328674-4328693 Msa0530290:intron 20.0%
!! TTGAATGCATTAATGTAAAA+AGG - chr4_1:4328731-4328750 Msa0530290:intron 20.0%
!!! AAGGTAAAGTGATTTATTTT+TGG - chr4_1:4329032-4329051 Msa0530290:intron 20.0%
!!! AAAATTGATTTTGACATGTT+TGG + chr4_1:4329542-4329561 None:intergenic 20.0%
!! TTTGGATATTTATGTATGTT+TGG + chr4_1:4329597-4329616 None:intergenic 20.0%
!! CATACATAAATATCCAAATT+TGG - chr4_1:4329599-4329618 Msa0530290:intron 20.0%
!!! TTATACCATTCTAAAATTTC+AGG + chr4_1:4329627-4329646 None:intergenic 20.0%
!!! ATTTTTAGTTCAGTTTGTAT+TGG + chr4_1:4329686-4329705 None:intergenic 20.0%
!! TGAAATTATATCACTATATC+AGG + chr4_1:4329759-4329778 None:intergenic 20.0%
!! TGATATAGTGATATAATTTC+AGG - chr4_1:4329758-4329777 Msa0530290:intron 20.0%
!! TTTAACAAATGGAATTGAAT+GGG + chr4_1:4330344-4330363 None:intergenic 20.0%
!!! TTTTAACAAATGGAATTGAA+TGG + chr4_1:4330345-4330364 None:intergenic 20.0%
!! AGTAGGTAATCATATTTAAT+CGG + chr4_1:4330744-4330763 None:intergenic 20.0%
!!! TATGCTTTTTGAATGATTTT+AGG - chr4_1:4330978-4330997 Msa0530290:CDS 20.0%
!! TATTAGATATGCTTTATACA+TGG - chr4_1:4331399-4331418 Msa0530290:intron 20.0%
!!! ATATTATATGGATTTTGTCA+TGG - chr4_1:4331473-4331492 Msa0530290:intron 20.0%
!!! TAATTGTTGTTTTTCTAACA+AGG - chr4_1:4331782-4331801 Msa0530290:intron 20.0%
!!! AATTGTTGTTTTTCTAACAA+GGG - chr4_1:4331783-4331802 Msa0530290:intron 20.0%
!!! GTTGTTTTGTTATTTGAATT+TGG - chr4_1:4331871-4331890 Msa0530290:intron 20.0%
!! GAAAATTTGAATTGAGTAAT+TGG - chr4_1:4331909-4331928 Msa0530290:intron 20.0%
!!! TGATTGTTGTTTTCTATTAA+GGG - chr4_1:4331979-4331998 Msa0530290:intron 20.0%
!!! TTGTTTTTTTTTTAAGAAGG+GGG - chr4_1:4332310-4332329 Msa0530290:intron 20.0%
!!! TTTTTTTTTTCTTTATCCCA+AGG - chr4_1:4332817-4332836 Msa0530290:intron 20.0%
!! TTATAATTGTTGATACTAGT+GGG - chr4_1:4333080-4333099 Msa0530290:intron 20.0%
!!! ATGATGATGATAACAAAAAA+AGG + chr4_1:4333495-4333514 None:intergenic 20.0%
!! TTAATATACATGCTTGAAAA+AGG + chr4_1:4333768-4333787 None:intergenic 20.0%
!! TTTCAGAATATTCTTAAGAT+GGG - chr4_1:4333959-4333978 Msa0530290:intron 20.0%
!!! AATTAATGGTTGATTTATGT+AGG - chr4_1:4334167-4334186 Msa0530290:intron 20.0%
!! AAAAAAAAAAAAAACTGCCA+AGG + chr4_1:4334924-4334943 None:intergenic 20.0%
! GTATCAATTAATTGTGTGTT+TGG - chr4_1:4326849-4326868 Msa0530290:three_prime_UTR 25.0%
! CAAATTCTCTATTCACAATA+TGG - chr4_1:4327074-4327093 Msa0530290:CDS 25.0%
! AAAATGTAGAAAAATGCACA+AGG + chr4_1:4327249-4327268 None:intergenic 25.0%
!!! TAATTGGAACAGTTTTATTG+AGG + chr4_1:4327389-4327408 None:intergenic 25.0%
! AAGAAGATCTTAAACTTGAA+TGG + chr4_1:4327480-4327499 None:intergenic 25.0%
! GATCTTCTTGATTTAAATAG+AGG - chr4_1:4327491-4327510 Msa0530290:intron 25.0%
!! ATGAATACAATCAACTTTTG+AGG + chr4_1:4327642-4327661 None:intergenic 25.0%
! ATATCTCAGATCAAGAATTT+GGG + chr4_1:4327988-4328007 None:intergenic 25.0%
! ATTATTTGTGTGTTCGATTA+TGG - chr4_1:4328317-4328336 Msa0530290:CDS 25.0%
! TTATTTGTGTGTTCGATTAT+GGG - chr4_1:4328318-4328337 Msa0530290:CDS 25.0%
!! TGATTGTGTAAAATTGATTC+TGG - chr4_1:4328370-4328389 Msa0530290:CDS 25.0%
! GTGATGAAATAAATAGTTTG+AGG - chr4_1:4328648-4328667 Msa0530290:intron 25.0%
!!! CTTCAAGTTAGAATCAATTT+TGG + chr4_1:4329219-4329238 None:intergenic 25.0%
! TCTAACTTGAAGCTAAAAAT+TGG - chr4_1:4329227-4329246 Msa0530290:intron 25.0%
!! GGATACATTCATCTAAAATT+GGG + chr4_1:4329300-4329319 None:intergenic 25.0%
! AATGTAAAGTGGTATATGTT+TGG - chr4_1:4329387-4329406 Msa0530290:intron 25.0%
! GTATATGTTTGGATACAATT+AGG - chr4_1:4329398-4329417 Msa0530290:intron 25.0%
!! GTTGATTCTAACTAAAAGTT+AGG + chr4_1:4329485-4329504 None:intergenic 25.0%
!! TTTAAGAGAATTGATTCTAG+AGG + chr4_1:4329568-4329587 None:intergenic 25.0%
! TAGAATCAATTCTCTTAAAG+TGG - chr4_1:4329569-4329588 Msa0530290:intron 25.0%
! AAAATTTCAGGAACCAAATT+TGG + chr4_1:4329615-4329634 None:intergenic 25.0%
!! TACAATTTGAGAGACTATTT+TGG - chr4_1:4329718-4329737 Msa0530290:intron 25.0%
! TATATTGTATTCTGCATTAG+AGG - chr4_1:4329820-4329839 Msa0530290:intron 25.0%
!!! GTTAGACTTTAGAGTTATTT+TGG - chr4_1:4329949-4329968 Msa0530290:intron 25.0%
!! GATTTCAACTTTTCTTTCAA+AGG + chr4_1:4330149-4330168 None:intergenic 25.0%
! CATATTTCATCCTTTGAATT+TGG - chr4_1:4330431-4330450 Msa0530290:intron 25.0%
! TTGATCTTAGAATTTAGAAG+AGG - chr4_1:4330480-4330499 Msa0530290:intron 25.0%
! TTAAACCACTAACAAAAACA+CGG + chr4_1:4330522-4330541 None:intergenic 25.0%
!!! TTATGAACTCTTTTGATTCT+AGG - chr4_1:4330611-4330630 Msa0530290:CDS 25.0%
! GTACAATATGAACAAAAAGT+AGG + chr4_1:4330761-4330780 None:intergenic 25.0%
!!! TTTTGAATGATTTTAGGATC+TGG - chr4_1:4330984-4331003 Msa0530290:CDS 25.0%
!!! TTTGAATGATTTTAGGATCT+GGG - chr4_1:4330985-4331004 Msa0530290:CDS 25.0%
!! GCATTTTATCATCAAAAGAA+AGG - chr4_1:4331032-4331051 Msa0530290:intron 25.0%
!! TTTACCCTTTTTATGAATTG+TGG - chr4_1:4331326-4331345 Msa0530290:intron 25.0%
!! TTACCCTTTTTATGAATTGT+GGG - chr4_1:4331327-4331346 Msa0530290:intron 25.0%
!! TAGTTTTCAAAACTATCAGA+CGG - chr4_1:4331514-4331533 Msa0530290:intron 25.0%
! ATTGTCTTTCCTAAATGAAT+CGG + chr4_1:4331561-4331580 None:intergenic 25.0%
! GAAAGACAATTATAATACGA+AGG - chr4_1:4331571-4331590 Msa0530290:intron 25.0%
! CATGTATAGTTGTTAGAAAT+TGG - chr4_1:4331611-4331630 Msa0530290:intron 25.0%
!!! ATGTCAATTTTTTCCTGAAA+AGG + chr4_1:4331690-4331709 None:intergenic 25.0%
!! TCAGGAAAAAATTGACATTT+TGG - chr4_1:4331692-4331711 Msa0530290:intron 25.0%
!!! AATTGACATTTTGGTTTTCT+AGG - chr4_1:4331701-4331720 Msa0530290:intron 25.0%
!!! ATTGACATTTTGGTTTTCTA+GGG - chr4_1:4331702-4331721 Msa0530290:intron 25.0%
!!! GTGATTGTTGTTTTCTATTA+AGG - chr4_1:4331978-4331997 Msa0530290:intron 25.0%
!! TCAGGAAAAAATCTACATTT+TGG - chr4_1:4332466-4332485 Msa0530290:intron 25.0%
!!! AATCTACATTTTGGTTTTCT+AGG - chr4_1:4332475-4332494 Msa0530290:intron 25.0%
!!! ATCTACATTTTGGTTTTCTA+GGG - chr4_1:4332476-4332495 Msa0530290:intron 25.0%
!!! ATGACATTTTGTGCTTTATT+TGG - chr4_1:4332503-4332522 Msa0530290:intron 25.0%
!!! TGACATTTTGTGCTTTATTT+GGG - chr4_1:4332504-4332523 Msa0530290:intron 25.0%
! GCAATGTTAAAAGTGATTAT+TGG + chr4_1:4332569-4332588 None:intergenic 25.0%
!!! TTTGCCTGAACATTTTTTTT+TGG - chr4_1:4332962-4332981 Msa0530290:intron 25.0%
! TCAACCAAAAAAAAATGTTC+AGG + chr4_1:4332969-4332988 None:intergenic 25.0%
!!! ACATTTTTTTTTGGTTGACT+TGG - chr4_1:4332971-4332990 Msa0530290:intron 25.0%
! CTTATAATTGTTGATACTAG+TGG - chr4_1:4333079-4333098 Msa0530290:intron 25.0%
!!! ATTTTTTTTGCTTAGTGTTG+CGG - chr4_1:4333539-4333558 Msa0530290:CDS 25.0%
! AAGTATATACATGCTTGAAA+AGG + chr4_1:4333707-4333726 None:intergenic 25.0%
!! TTCAAGCATGTATATACTTT+TGG - chr4_1:4333708-4333727 Msa0530290:intron 25.0%
! GATTAATATAAAGGGAAAAC+TGG + chr4_1:4333795-4333814 None:intergenic 25.0%
! GTTTCAGAATATTCTTAAGA+TGG - chr4_1:4333958-4333977 Msa0530290:intron 25.0%
!!! GGAAACAAAATAGTTTTACA+CGG + chr4_1:4334955-4334974 None:intergenic 25.0%
! AGTAAATATACAGCAATTGA+GGG + chr4_1:4334976-4334995 None:intergenic 25.0%
! TAGTAAATATACAGCAATTG+AGG + chr4_1:4334977-4334996 None:intergenic 25.0%
TTGTTGCTGGTCATAATAAA+CGG - chr4_1:4326751-4326770 Msa0530290:three_prime_UTR 30.0%
TAATTGTGTGTTTGGTTATG+CGG - chr4_1:4326857-4326876 Msa0530290:three_prime_UTR 30.0%
AAAGAACACAAAGAGATGAA+GGG + chr4_1:4327048-4327067 None:intergenic 30.0%
AAGGAATATTGCAGAAAATG+TGG + chr4_1:4327191-4327210 None:intergenic 30.0%
ACTGTTCCAATTATCTTTCT+TGG - chr4_1:4327396-4327415 Msa0530290:intron 30.0%
TCTTGACCAAGAAAGATAAT+TGG + chr4_1:4327405-4327424 None:intergenic 30.0%
! AACACGTTCGTTTTCATTTA+TGG - chr4_1:4327452-4327471 Msa0530290:CDS 30.0%
AACACGATTGTTTGAGAAAT+TGG + chr4_1:4327575-4327594 None:intergenic 30.0%
! TTCTCAAACAATCGTGTTTT+TGG - chr4_1:4327577-4327596 Msa0530290:intron 30.0%
AGGATTAATAATCTCAAGCA+AGG - chr4_1:4327680-4327699 Msa0530290:CDS 30.0%
GGATTAATAATCTCAAGCAA+GGG - chr4_1:4327681-4327700 Msa0530290:CDS 30.0%
!!! AAGTTTTTTGTGAGGAAGAT+CGG + chr4_1:4327948-4327967 None:intergenic 30.0%
!!! TTTGATGGAAGTTTTTTGTG+AGG + chr4_1:4327956-4327975 None:intergenic 30.0%
ATCAAGAATTTGGGGATTTA+GGG + chr4_1:4327979-4327998 None:intergenic 30.0%
TATCTCAGATCAAGAATTTG+GGG + chr4_1:4327987-4328006 None:intergenic 30.0%
GATATCTCAGATCAAGAATT+TGG + chr4_1:4327989-4328008 None:intergenic 30.0%
GATATCAATCTTGATCAAGA+TGG - chr4_1:4328003-4328022 Msa0530290:intron 30.0%
AACAAGCTTGAATTGAACAT+CGG + chr4_1:4326685-4326704 None:intergenic 30.0%
TATTTGTGTGTTCGATTATG+GGG - chr4_1:4328319-4328338 Msa0530290:CDS 30.0%
AAAGAAAAACGACATAAGGA+GGG + chr4_1:4328568-4328587 None:intergenic 30.0%
AAAAGAAAAACGACATAAGG+AGG + chr4_1:4328569-4328588 None:intergenic 30.0%
CTCAAAAGAAAAACGACATA+AGG + chr4_1:4328572-4328591 None:intergenic 30.0%
TGTTTCAATGTTTGATTCTG+TGG - chr4_1:4328626-4328645 Msa0530290:CDS 30.0%
! TCTAATTTGCAGCTAACAAT+TGG - chr4_1:4328872-4328891 Msa0530290:intron 30.0%
!!! TTGATTCTAGGATGGATTTT+TGG - chr4_1:4328900-4328919 Msa0530290:intron 30.0%
!! ACCTTCAACTCAATTTTAGT+CGG + chr4_1:4329017-4329036 None:intergenic 30.0%
! CAAGTTAGAATCAATTTTGG+AGG + chr4_1:4329216-4329235 None:intergenic 30.0%
!! AAATTGGAGCTTTTGATTCT+AGG - chr4_1:4329243-4329262 Msa0530290:intron 30.0%
! CGGATACATTCATCTAAAAT+TGG + chr4_1:4329301-4329320 None:intergenic 30.0%
!! CTTTTAGTTAGAATCAACTC+TGG - chr4_1:4329487-4329506 Msa0530290:intron 30.0%
!! TGGTTCCTGAAATTTTAGAA+TGG - chr4_1:4329619-4329638 Msa0530290:intron 30.0%
! TTGAATGGGCTTCTAATTTA+TGG + chr4_1:4330330-4330349 None:intergenic 30.0%
TGTACTTCTTCCAAATTCAA+AGG + chr4_1:4330444-4330463 None:intergenic 30.0%
!!! ACACTAGCTTTTCCTTTTTT+GGG + chr4_1:4330690-4330709 None:intergenic 30.0%
!!! AACACTAGCTTTTCCTTTTT+TGG + chr4_1:4330691-4330710 None:intergenic 30.0%
TCAATTGATGCAAATGATAC+TGG - chr4_1:4330789-4330808 Msa0530290:intron 30.0%
! GCATTTTGTCAAGAAATATC+TGG - chr4_1:4330876-4330895 Msa0530290:intron 30.0%
AGTAATAGGCAAACAATGAT+TGG + chr4_1:4330910-4330929 None:intergenic 30.0%
! TGCATATTTTGTACATGTAG+TGG + chr4_1:4331015-4331034 None:intergenic 30.0%
TTTATCATCAAAAGAAAGGC+TGG - chr4_1:4331036-4331055 Msa0530290:intron 30.0%
CTTCCCACAATTCATAAAAA+GGG + chr4_1:4331333-4331352 None:intergenic 30.0%
ACTTCCCACAATTCATAAAA+AGG + chr4_1:4331334-4331353 None:intergenic 30.0%
GCGAAGACAGTTATATTATA+TGG - chr4_1:4331461-4331480 Msa0530290:intron 30.0%
TCTAGATTAGAAGTTAACGT+CGG - chr4_1:4331647-4331666 Msa0530290:intron 30.0%
!! AGTTGTATTTGAGTTGAAGA+TGG - chr4_1:4331947-4331966 Msa0530290:intron 30.0%
ATTTACTACTCTAGATACAG+CGG + chr4_1:4332063-4332082 None:intergenic 30.0%
!! AATTTGCACTCTGAAATTGT+AGG - chr4_1:4332087-4332106 Msa0530290:intron 30.0%
TTGCCTATTCACAAATTTCA+GGG + chr4_1:4332129-4332148 None:intergenic 30.0%
TTTGCCTATTCACAAATTTC+AGG + chr4_1:4332130-4332149 None:intergenic 30.0%
TTGTGAATAGGCAAATTTCA+AGG - chr4_1:4332135-4332154 Msa0530290:intron 30.0%
TTGTCTAGTCACAAATTTCA+AGG - chr4_1:4332182-4332201 Msa0530290:intron 30.0%
GAAGGACAATTATGATATGA+AGG - chr4_1:4332345-4332364 Msa0530290:intron 30.0%
CGTGTATAGTTGTTAGAAAT+TGG - chr4_1:4332385-4332404 Msa0530290:intron 30.0%
TCTAGATTAGAAGTTAACGT+CGG - chr4_1:4331647-4331666 Msa0530290:intron 30.0%
ATTGAAAAGGCTAGAACATT+TGG + chr4_1:4332627-4332646 None:intergenic 30.0%
AAGGACATAAGCAATTGAAA+AGG + chr4_1:4332640-4332659 None:intergenic 30.0%
TGTCCTTTCTTGCAATAAAA+TGG - chr4_1:4332653-4332672 Msa0530290:intron 30.0%
!!! TTGCCATTTTATTGCAAGAA+AGG + chr4_1:4332659-4332678 None:intergenic 30.0%
ATAAAATGGCAAGAAGACTA+AGG - chr4_1:4332667-4332686 Msa0530290:intron 30.0%
TATTAAAAAACCCTGTGGAT+CGG - chr4_1:4332702-4332721 Msa0530290:intron 30.0%
ATGCTATGTTATTGTTCTGT+TGG - chr4_1:4332752-4332771 Msa0530290:intron 30.0%
AGAAATCCAAATAGATCCTT+GGG + chr4_1:4332836-4332855 None:intergenic 30.0%
AACTAAAGAAAGAGGAGAAA+TGG + chr4_1:4332869-4332888 None:intergenic 30.0%
!! ACAACATAATGATGGACTAT+GGG + chr4_1:4332910-4332929 None:intergenic 30.0%
TTGAATGGACAACATAATGA+TGG + chr4_1:4332918-4332937 None:intergenic 30.0%
!!! TATTAGAGACTACTAGCTTT+TGG + chr4_1:4333201-4333220 None:intergenic 30.0%
ATGACAAAGATAACAAGATC+TGG + chr4_1:4333249-4333268 None:intergenic 30.0%
! AGATCTTGTTATCTTTGTCA+TGG - chr4_1:4333248-4333267 Msa0530290:intron 30.0%
AACACTCTGTTTAAATGCTT+GGG + chr4_1:4333307-4333326 None:intergenic 30.0%
GTCATTATCACAAAAATGGA+TGG - chr4_1:4333339-4333358 Msa0530290:intron 30.0%
CATATCCTAAAACCAATGTT+GGG + chr4_1:4333741-4333760 None:intergenic 30.0%
ACATATCCTAAAACCAATGT+TGG + chr4_1:4333742-4333761 None:intergenic 30.0%
ATATACATGCTTGAAAAAGG+TGG + chr4_1:4333765-4333784 None:intergenic 30.0%
CGACTGGAGATTAATATAAA+GGG + chr4_1:4333803-4333822 None:intergenic 30.0%
CCTTTATATTAATCTCCAGT+CGG - chr4_1:4333801-4333820 Msa0530290:intron 30.0%
!! AAAGTATTTTTCCACCAAGT+GGG + chr4_1:4334059-4334078 None:intergenic 30.0%
ATTAATTCATTGCCAAATCC+TGG + chr4_1:4334207-4334226 None:intergenic 30.0%
GGCAATGAATTAATACCAAA+AGG - chr4_1:4334213-4334232 Msa0530290:intron 30.0%
TGAATTAATACCAAAAGGCA+AGG - chr4_1:4334218-4334237 Msa0530290:intron 30.0%
AATTAAAGGTTAGCATGTGA+AGG + chr4_1:4334390-4334409 None:intergenic 30.0%
TGAAACACGATAGCAATTAA+AGG + chr4_1:4334404-4334423 None:intergenic 30.0%
AAGATATGGAGCAAAATGAA+AGG - chr4_1:4334544-4334563 Msa0530290:intron 30.0%
AGATATGGAGCAAAATGAAA+GGG - chr4_1:4334545-4334564 Msa0530290:intron 30.0%
AAGTAATCAGAAACAAACCT+CGG + chr4_1:4334782-4334801 None:intergenic 30.0%
GTAATCTATGCAGTTTGAAT+TGG - chr4_1:4334838-4334857 Msa0530290:intron 30.0%
CTGATTCACAACAAATACTT+TGG + chr4_1:4335015-4335034 None:intergenic 30.0%
! AATCTTGATGATCTTGTTGC+TGG - chr4_1:4326738-4326757 Msa0530290:three_prime_UTR 35.0%
!! GATGAAAAAGCGTTACTTGT+CGG + chr4_1:4326785-4326804 None:intergenic 35.0%
CCTAAAACCCAAACCAAATA+GGG + chr4_1:4326989-4327008 None:intergenic 35.0%
ACCTAAAACCCAAACCAAAT+AGG + chr4_1:4326990-4327009 None:intergenic 35.0%
!!! TTTGGTTTGGGTTTTAGGTT+TGG - chr4_1:4326991-4327010 Msa0530290:CDS 35.0%
AAGAACACAAAGAGATGAAG+GGG + chr4_1:4327047-4327066 None:intergenic 35.0%
GAAAGAACACAAAGAGATGA+AGG + chr4_1:4327049-4327068 None:intergenic 35.0%
AGATCAATACAATGAGCTCT+TGG - chr4_1:4327422-4327441 Msa0530290:CDS 35.0%
AATGAAAACGAACGTGTTCT+TGG + chr4_1:4327450-4327469 None:intergenic 35.0%
! TTGATTTAAATAGAGGTGCG+TGG - chr4_1:4327498-4327517 Msa0530290:intron 35.0%
! TGATTTAAATAGAGGTGCGT+GGG - chr4_1:4327499-4327518 Msa0530290:intron 35.0%
ACGATTGTTTGAGAAATTGG+AGG + chr4_1:4327572-4327591 None:intergenic 35.0%
! AAGGTCTTGTCATACATCAA+TGG + chr4_1:4327609-4327628 None:intergenic 35.0%
TGATGTATGACAAGACCTTA+AGG - chr4_1:4327610-4327629 Msa0530290:intron 35.0%
TATGACAAGACCTTAAGGAA+AGG - chr4_1:4327615-4327634 Msa0530290:intron 35.0%
GATTGCTTTACTAAGATACG+AGG - chr4_1:4327719-4327738 Msa0530290:CDS 35.0%
TTACTAAGATACGAGGACTT+TGG - chr4_1:4327726-4327745 Msa0530290:CDS 35.0%
TACTAAGATACGAGGACTTT+GGG - chr4_1:4327727-4327746 Msa0530290:CDS 35.0%
GATCAAGAATTTGGGGATTT+AGG + chr4_1:4327980-4327999 None:intergenic 35.0%
ATGGTAAAGTGATCTGTGTT+CGG - chr4_1:4328407-4328426 Msa0530290:CDS 35.0%
AAGTGAGTCGAACGATAAAT+TGG - chr4_1:4328444-4328463 Msa0530290:intron 35.0%
GAGGGTAAAATTAACTCTAC+TGG + chr4_1:4328546-4328565 None:intergenic 35.0%
! CTGGCTTAAAAGTGTGTTTA+AGG - chr4_1:4328693-4328712 Msa0530290:intron 35.0%
TCTAACATGCAGCTGAAAAT+TGG + chr4_1:4328806-4328825 None:intergenic 35.0%
!! CAATTGGAGCTTTTGATTCT+AGG - chr4_1:4328888-4328907 Msa0530290:intron 35.0%
!!! CGATACCAATTTTTAGTGTG+TGG - chr4_1:4328962-4328981 Msa0530290:intron 35.0%
TGTCACCACACACTAAAAAT+TGG + chr4_1:4328970-4328989 None:intergenic 35.0%
!! TCCGACTAAAATTGAGTTGA+AGG - chr4_1:4329013-4329032 Msa0530290:intron 35.0%
! GTAGCCAAAATTGATTCTAC+AGG - chr4_1:4329139-4329158 Msa0530290:intron 35.0%
CACAACAGAATCAAACACAA+CGG + chr4_1:4329321-4329340 None:intergenic 35.0%
! GAAGTGAGTTGAATGTAAAG+TGG - chr4_1:4329376-4329395 Msa0530290:intron 35.0%
TTAGTTAGAATCAACTCTGG+AGG - chr4_1:4329490-4329509 Msa0530290:intron 35.0%
GGATGTTCTCTGGTATAATT+TGG + chr4_1:4329521-4329540 None:intergenic 35.0%
!! TATAATTTCAGGCACCGAAT+TGG - chr4_1:4329769-4329788 Msa0530290:intron 35.0%
!! ATAATTTCAGGCACCGAATT+GGG - chr4_1:4329770-4329789 Msa0530290:intron 35.0%
! TATTCTGCATTAGAGGCTTT+TGG - chr4_1:4329827-4329846 Msa0530290:intron 35.0%
GCACATGTATAAGTGTTCAA+GGG + chr4_1:4330039-4330058 None:intergenic 35.0%
AGCACATGTATAAGTGTTCA+AGG + chr4_1:4330040-4330059 None:intergenic 35.0%
GCTTGGTAAAAAGTTTATCC+AGG + chr4_1:4330127-4330146 None:intergenic 35.0%
! CAACTTTTCTTTCAAAGGCT+TGG + chr4_1:4330144-4330163 None:intergenic 35.0%
!!! TGCTCTCAAACTTTTTCAAC+AGG - chr4_1:4330208-4330227 Msa0530290:intron 35.0%
! TTTGGAAGAAGTACAAGTCT+AGG - chr4_1:4330449-4330468 Msa0530290:intron 35.0%
CTTAGAATTTAGAAGAGGCT+TGG - chr4_1:4330485-4330504 Msa0530290:intron 35.0%
!! GTCATGTTTGTTGGTTTACA+AGG - chr4_1:4330711-4330730 Msa0530290:intron 35.0%
ATAGGCAAACAATGATTGGA+AGG + chr4_1:4330906-4330925 None:intergenic 35.0%
ATAGAAAGGGATCTTAGCTT+TGG + chr4_1:4331129-4331148 None:intergenic 35.0%
AAAGCTAAGATCCCTTTCTA+TGG - chr4_1:4331128-4331147 Msa0530290:intron 35.0%
AAGACTACCTTCCATAGAAA+GGG + chr4_1:4331142-4331161 None:intergenic 35.0%
AATTGTGGGAAGTGAAATGA+TGG - chr4_1:4331341-4331360 Msa0530290:intron 35.0%
GAAGTCAAGGTTATAGATGT+AGG - chr4_1:4331433-4331452 Msa0530290:intron 35.0%
ACGGATAATATTCCATGAGA+AGG - chr4_1:4331533-4331552 Msa0530290:intron 35.0%
CGGATAATATTCCATGAGAA+GGG - chr4_1:4331534-4331553 Msa0530290:intron 35.0%
AGTTGTATCTGAGTTCAAGA+TGG - chr4_1:4331750-4331769 Msa0530290:intron 35.0%
TGAGTTCAAGATGGTTAGAT+TGG - chr4_1:4331759-4331778 Msa0530290:intron 35.0%
!! TTGAGTTGAAGATGGTTACA+TGG - chr4_1:4331955-4331974 Msa0530290:intron 35.0%
! TGAGTTGAAGATGGTTACAT+GGG - chr4_1:4331956-4331975 Msa0530290:intron 35.0%
TTTACTACTCTAGATACAGC+GGG + chr4_1:4332062-4332081 None:intergenic 35.0%
TACCCCTGAAATTTGTGAAT+AGG - chr4_1:4332123-4332142 Msa0530290:intron 35.0%
TGCCTATTCACAAATTTCAG+GGG + chr4_1:4332128-4332147 None:intergenic 35.0%
TGAATAGGCAAATTTCAAGG+TGG - chr4_1:4332138-4332157 Msa0530290:intron 35.0%
CAAGGTGGTAATTCAAAATC+AGG - chr4_1:4332153-4332172 Msa0530290:intron 35.0%
! GAGTTAGTCAACTTCTTTTC+AGG - chr4_1:4332448-4332467 Msa0530290:intron 35.0%
AAAAGGCTAGAACATTTGGT+AGG + chr4_1:4332623-4332642 None:intergenic 35.0%
TAGCCTATTAAAAAACCCTG+TGG - chr4_1:4332697-4332716 Msa0530290:intron 35.0%
!!! GATCCACAGGGTTTTTTAAT+AGG + chr4_1:4332703-4332722 None:intergenic 35.0%
CTTTATCCCAAGGATCTATT+TGG - chr4_1:4332827-4332846 Msa0530290:intron 35.0%
GAGAAATCCAAATAGATCCT+TGG + chr4_1:4332837-4332856 None:intergenic 35.0%
!!! CTCCTCTTTCTTTAGTTTTG+CGG - chr4_1:4332872-4332891 Msa0530290:intron 35.0%
!!! TTTCTTTAGTTTTGCGGTGA+GGG - chr4_1:4332878-4332897 Msa0530290:intron 35.0%
!! GACAACATAATGATGGACTA+TGG + chr4_1:4332911-4332930 None:intergenic 35.0%
TAGAGAAGCAAAGAGTTGAA+TGG + chr4_1:4332933-4332952 None:intergenic 35.0%
CCATATAGCTGCAAAGTAAT+AGG + chr4_1:4332997-4333016 None:intergenic 35.0%
CCTATTACTTTGCAGCTATA+TGG - chr4_1:4332994-4333013 Msa0530290:intron 35.0%
TAATTGTTGATACTAGTGGG+CGG - chr4_1:4333083-4333102 Msa0530290:intron 35.0%
! AGATCTGGTTTCTGAATCAA+CGG + chr4_1:4333234-4333253 None:intergenic 35.0%
TTTGTCATGGATAGCAGTAT+TGG - chr4_1:4333261-4333280 Msa0530290:intron 35.0%
CAACACTCTGTTTAAATGCT+TGG + chr4_1:4333308-4333327 None:intergenic 35.0%
!! TTTAAACAGAGTGTTGCAGT+TGG - chr4_1:4333312-4333331 Msa0530290:intron 35.0%
!! TTAAACAGAGTGTTGCAGTT+GGG - chr4_1:4333313-4333332 Msa0530290:intron 35.0%
GGCTGTCATTATCACAAAAA+TGG - chr4_1:4333335-4333354 Msa0530290:intron 35.0%
AAGAGTCCTGTCATATTCAT+TGG - chr4_1:4333567-4333586 Msa0530290:CDS 35.0%
! GTCTATTAGGTGTGTACTTT+TGG - chr4_1:4333646-4333665 Msa0530290:intron 35.0%
CATATCCTAAAACCAATGTC+GGG + chr4_1:4333679-4333698 None:intergenic 35.0%
GCATATCCTAAAACCAATGT+CGG + chr4_1:4333680-4333699 None:intergenic 35.0%
TATACATGCTTGAAAAGGTG+AGG + chr4_1:4333702-4333721 None:intergenic 35.0%
!!! TTTGGTTTTTGTCCCAACAT+TGG - chr4_1:4333726-4333745 Msa0530290:intron 35.0%
!!! TTTGTCCCAACATTGGTTTT+AGG - chr4_1:4333733-4333752 Msa0530290:intron 35.0%
CCGACTGGAGATTAATATAA+AGG + chr4_1:4333804-4333823 None:intergenic 35.0%
! TTAATCTCCAGTCGGTATTT+TGG - chr4_1:4333809-4333828 Msa0530290:intron 35.0%
AATCCATGAAGTTGTTCCAA+TGG - chr4_1:4333868-4333887 Msa0530290:intron 35.0%
GTACATAATCCTCAAGGTAA+AGG + chr4_1:4333933-4333952 None:intergenic 35.0%
! AAGTATTTTTCCACCAAGTG+GGG + chr4_1:4334058-4334077 None:intergenic 35.0%
!! CAAAGTATTTTTCCACCAAG+TGG + chr4_1:4334060-4334079 None:intergenic 35.0%
! CACTTGGTGGAAAAATACTT+TGG - chr4_1:4334058-4334077 Msa0530290:intron 35.0%
TCTCATTTGATGCACTAAAC+TGG - chr4_1:4334098-4334117 Msa0530290:intron 35.0%
ATTTGATGCACTAAACTGGA+TGG - chr4_1:4334102-4334121 Msa0530290:intron 35.0%
! GCTACTCTCTGATTTTCTTT+GGG - chr4_1:4334139-4334158 Msa0530290:intron 35.0%
! CTACTCTCTGATTTTCTTTG+GGG - chr4_1:4334140-4334159 Msa0530290:intron 35.0%
! TACTCTCTGATTTTCTTTGG+GGG - chr4_1:4334141-4334160 Msa0530290:intron 35.0%
! TTCTTTGGGGGACTAATTAA+TGG - chr4_1:4334153-4334172 Msa0530290:intron 35.0%
!!! TAGGTTTTTTCTATGCTACC+AGG - chr4_1:4334186-4334205 Msa0530290:intron 35.0%
! TTTTCTATGCTACCAGGATT+TGG - chr4_1:4334192-4334211 Msa0530290:intron 35.0%
! TGTAACGCTTAATTTTTGCC+TGG + chr4_1:4334254-4334273 None:intergenic 35.0%
TAAGCGTTACATGACAATGA+TGG - chr4_1:4334263-4334282 Msa0530290:intron 35.0%
ATGGACTCAATGACAAATGA+AGG - chr4_1:4334282-4334301 Msa0530290:intron 35.0%
AGGGCTTAAAATACCAAAGA+AGG - chr4_1:4334564-4334583 Msa0530290:intron 35.0%
GGGCTTAAAATACCAAAGAA+GGG - chr4_1:4334565-4334584 Msa0530290:intron 35.0%
GACATTCATGTTTCGAGATA+AGG + chr4_1:4334602-4334621 None:intergenic 35.0%
CTAAAGCAAATTGGAGGAAT+GGG - chr4_1:4334655-4334674 Msa0530290:intron 35.0%
ACAAAGCTTGATGAAATCGA+TGG - chr4_1:4334684-4334703 Msa0530290:intron 35.0%
CAAAGCTTGATGAAATCGAT+GGG - chr4_1:4334685-4334704 Msa0530290:intron 35.0%
GAAATCGATGGGATCTAATA+AGG - chr4_1:4334696-4334715 Msa0530290:intron 35.0%
GGATCTAATAAGGACATGAT+GGG - chr4_1:4334706-4334725 Msa0530290:intron 35.0%
CTGCCAAGGTAATTAACTAA+TGG + chr4_1:4334910-4334929 None:intergenic 35.0%
!!! CCCTATTTGGTTTGGGTTTT+AGG - chr4_1:4326986-4327005 Msa0530290:CDS 40.0%
ATTGCAACAAGATTCACTCG+TGG + chr4_1:4327291-4327310 None:intergenic 40.0%
CACTATGTGCATCCTAATGA+AGG - chr4_1:4327342-4327361 Msa0530290:intron 40.0%
!! CTTTTGAGGACCTTTCCTTA+AGG + chr4_1:4327628-4327647 None:intergenic 40.0%
ATGTTGCTAATCTGCGTTGT+AGG - chr4_1:4327660-4327679 Msa0530290:intron 40.0%
! TTTGGGGATTTAGGGTTTGA+TGG + chr4_1:4327971-4327990 None:intergenic 40.0%
! AATCTTGATGATCTTGCTGC+TGG - chr4_1:4328202-4328221 Msa0530290:intron 40.0%
!! GAGGAAAAAGCGTTACTTGT+TGG + chr4_1:4328249-4328268 None:intergenic 40.0%
TCTGGCTAAAAGCGAGTTAA+TGG - chr4_1:4328388-4328407 Msa0530290:CDS 40.0%
AAAAACGACATAAGGAGGGA+GGG + chr4_1:4328564-4328583 None:intergenic 40.0%
!! TGGAGCTTTTGATTCTAGGA+TGG - chr4_1:4328892-4328911 Msa0530290:intron 40.0%
! TGCGCCTGTAGAATCAATTT+TGG + chr4_1:4329146-4329165 None:intergenic 40.0%
TGACATGTTTGGATGTTCTC+TGG + chr4_1:4329531-4329550 None:intergenic 40.0%
!! TAATTTCAGGCACCGAATTG+GGG - chr4_1:4329771-4329790 Msa0530290:intron 40.0%
AAAAGAGTGAACCCCCAATT+CGG + chr4_1:4329786-4329805 None:intergenic 40.0%
GTGCTTTGATCTATGAGACA+TGG - chr4_1:4329918-4329937 Msa0530290:intron 40.0%
CTTAAGCGCTAATTGACTGA+TGG - chr4_1:4329986-4330005 Msa0530290:intron 40.0%
GTTTATCCAGGCGAACTTTA+AGG + chr4_1:4330115-4330134 None:intergenic 40.0%
AGCATTCGTAAGCAAAAGAG+AGG + chr4_1:4330391-4330410 None:intergenic 40.0%
CAATGAGCTCTGCAATATCT+TGG - chr4_1:4330641-4330660 Msa0530290:CDS 40.0%
!!! TCCTTTTTTGGGAGTGAAAG+CGG + chr4_1:4330679-4330698 None:intergenic 40.0%
GCTAGTGTTGTCATGTTTGT+TGG - chr4_1:4330702-4330721 Msa0530290:intron 40.0%
! AATGCATTGTCACTTGCTGA+TGG - chr4_1:4330948-4330967 Msa0530290:CDS 40.0%
CTAAGATCCCTTTCTATGGA+AGG - chr4_1:4331132-4331151 Msa0530290:intron 40.0%
CAAGACTACCTTCCATAGAA+AGG + chr4_1:4331143-4331162 None:intergenic 40.0%
CTTTCTATGGAAGGTAGTCT+TGG - chr4_1:4331141-4331160 Msa0530290:intron 40.0%
! GAGTTAGTCAACTCCTTTTC+AGG - chr4_1:4331674-4331693 Msa0530290:intron 40.0%
AATTCATCCCCTGAAGTTGT+AGG + chr4_1:4332223-4332242 None:intergenic 40.0%
TACAACTTCAGGGGATGAAT+TGG - chr4_1:4332222-4332241 Msa0530290:intron 40.0%
ACAACTTCAGGGGATGAATT+GGG - chr4_1:4332223-4332242 Msa0530290:intron 40.0%
! TTTGGGATAATGAATCACCG+TGG - chr4_1:4332521-4332540 Msa0530290:intron 40.0%
! TTTTAACATTGCCGAGTCCA+AGG - chr4_1:4332577-4332596 Msa0530290:intron 40.0%
CCAAATATAAGCCTTGGACT+CGG + chr4_1:4332591-4332610 None:intergenic 40.0%
GGGAAACCAAATATAAGCCT+TGG + chr4_1:4332597-4332616 None:intergenic 40.0%
GGCAAGAAGACTAAGGAAAT+TGG - chr4_1:4332674-4332693 Msa0530290:intron 40.0%
CACCGCAAAACTAAAGAAAG+AGG + chr4_1:4332877-4332896 None:intergenic 40.0%
!!! CTTTCTTTAGTTTTGCGGTG+AGG - chr4_1:4332877-4332896 Msa0530290:intron 40.0%
!!! TTCTTTAGTTTTGCGGTGAG+GGG - chr4_1:4332879-4332898 Msa0530290:intron 40.0%
AGATCCTGTGAAAATTGCTG+TGG - chr4_1:4333021-4333040 Msa0530290:intron 40.0%
TGAAGAAATGCGCCAAGTTT+CGG - chr4_1:4333129-4333148 Msa0530290:intron 40.0%
!! TAAACAGAGTGTTGCAGTTG+GGG - chr4_1:4333314-4333333 Msa0530290:intron 40.0%
AAAAATGGATGGCCATGCAA+AGG - chr4_1:4333350-4333369 Msa0530290:intron 40.0%
AAAATGGATGGCCATGCAAA+GGG - chr4_1:4333351-4333370 Msa0530290:intron 40.0%
CCAGTTCCAATGAATATGAC+AGG + chr4_1:4333576-4333595 None:intergenic 40.0%
CCTGTCATATTCATTGGAAC+TGG - chr4_1:4333573-4333592 Msa0530290:CDS 40.0%
CCTAATAGACGACTGACAAA+TGG + chr4_1:4333636-4333655 None:intergenic 40.0%
CCATTTGTCAGTCGTCTATT+AGG - chr4_1:4333633-4333652 Msa0530290:intron 40.0%
GATCCATTGGAACAACTTCA+TGG + chr4_1:4333874-4333893 None:intergenic 40.0%
TGCAGCTTATTAAGCAGTTC+AGG + chr4_1:4333902-4333921 None:intergenic 40.0%
CTGCTTAATAAGCTGCAAGA+AGG - chr4_1:4333905-4333924 Msa0530290:intron 40.0%
AAGAAGGAACCTTTACCTTG+AGG - chr4_1:4333921-4333940 Msa0530290:intron 40.0%
ATTTACATTTGACCCCCACT+TGG - chr4_1:4334042-4334061 Msa0530290:intron 40.0%
! AGTATTTTTCCACCAAGTGG+GGG + chr4_1:4334057-4334076 None:intergenic 40.0%
! GGCTACTCTCTGATTTTCTT+TGG - chr4_1:4334138-4334157 Msa0530290:intron 40.0%
AATACCAAAAGGCAAGGATC+AGG - chr4_1:4334224-4334243 Msa0530290:intron 40.0%
TTGCTATCGTGTTTCAGAGT+TGG - chr4_1:4334408-4334427 Msa0530290:intron 40.0%
GTGACTCATTCATGAGCTTT+GGG + chr4_1:4334444-4334463 None:intergenic 40.0%
CAAAGCTCATGAATGAGTCA+CGG - chr4_1:4334443-4334462 Msa0530290:intron 40.0%
TCGACAAGTTAGGGAAGTAA+TGG - chr4_1:4334492-4334511 Msa0530290:intron 40.0%
! TAGGGAAGTAATGGAGATGA+TGG - chr4_1:4334501-4334520 Msa0530290:intron 40.0%
GAACTCATTTCTCCCTTCTT+TGG + chr4_1:4334580-4334599 None:intergenic 40.0%
TTTGCTTTAGCATCTGTGGA+GGG + chr4_1:4334645-4334664 None:intergenic 40.0%
ATTTGCTTTAGCATCTGTGG+AGG + chr4_1:4334646-4334665 None:intergenic 40.0%
! CCAATTTGCTTTAGCATCTG+TGG + chr4_1:4334649-4334668 None:intergenic 40.0%
CCACAGATGCTAAAGCAAAT+TGG - chr4_1:4334646-4334665 Msa0530290:intron 40.0%
CAGATGCTAAAGCAAATTGG+AGG - chr4_1:4334649-4334668 Msa0530290:intron 40.0%
GCTAAAGCAAATTGGAGGAA+TGG - chr4_1:4334654-4334673 Msa0530290:intron 40.0%
GGGATCTAATAAGGACATGA+TGG - chr4_1:4334705-4334724 Msa0530290:intron 40.0%
! AAGGACATGATGGGAATGTT+TGG - chr4_1:4334715-4334734 Msa0530290:intron 40.0%
GAACTCTTATGAAGCACAAG+AGG + chr4_1:4334805-4334824 None:intergenic 40.0%
GGGCCATTAGTTAATTACCT+TGG - chr4_1:4334904-4334923 Msa0530290:CDS 40.0%
TAAATCGAACTTCTCTCCAC+AGG - chr4_1:4335072-4335091 Msa0530290:CDS 40.0%
! AGCGAGTTGAATGTAACGAG+TGG - chr4_1:4326936-4326955 Msa0530290:CDS 45.0%
! ACATTTTACCTCACCCAGAC+CGG - chr4_1:4326959-4326978 Msa0530290:CDS 45.0%
! CCAAACCAAATAGGGTACTC+CGG + chr4_1:4326981-4327000 None:intergenic 45.0%
! CGGAGTACCCTATTTGGTTT+GGG - chr4_1:4326979-4326998 Msa0530290:CDS 45.0%
GCAGAGATGGAACCTTCATT+AGG + chr4_1:4327357-4327376 None:intergenic 45.0%
GAGGTGCAATTTAGCAGAGA+TGG + chr4_1:4327370-4327389 None:intergenic 45.0%
AAGAGTTTCTTCGACGCGAA+TGG + chr4_1:4327922-4327941 None:intergenic 45.0%
GAAAAACGACATAAGGAGGG+AGG + chr4_1:4328565-4328584 None:intergenic 45.0%
!! AATTTCAGGCACCGAATTGG+GGG - chr4_1:4329772-4329791 Msa0530290:intron 45.0%
GTGTTCAAGGGAGCTTTCAA+AGG + chr4_1:4330027-4330046 None:intergenic 45.0%
ATGCATCCTTAAAGTTCGCC+TGG - chr4_1:4330106-4330125 Msa0530290:intron 45.0%
!! CGTTGCCGTGTTTTTGTTAG+TGG - chr4_1:4330514-4330533 Msa0530290:intron 45.0%
CTCTGCAATATCTTGGATCC+TGG - chr4_1:4330648-4330667 Msa0530290:CDS 45.0%
!!! CCTTTTTTGGGAGTGAAAGC+GGG + chr4_1:4330678-4330697 None:intergenic 45.0%
GTATCTGCACATACTAGAGC+TGG + chr4_1:4331065-4331084 None:intergenic 45.0%
TGTGCAGATACATTCAGAGC+TGG - chr4_1:4331074-4331093 Msa0530290:intron 45.0%
TGTGGGAAGTGAAATGATGG+AGG - chr4_1:4331344-4331363 Msa0530290:intron 45.0%
! GGCTTTTGACAACGAAGTCA+AGG - chr4_1:4331420-4331439 Msa0530290:intron 45.0%
!! CACTCTGAAATTGTAGGCGT+CGG - chr4_1:4332093-4332112 Msa0530290:intron 45.0%
!! ACTCTGAAATTGTAGGCGTC+GGG - chr4_1:4332094-4332113 Msa0530290:intron 45.0%
CAACTTCAGGGGATGAATTG+GGG - chr4_1:4332224-4332243 Msa0530290:intron 45.0%
AAGAAGGGGGCGATTCATTT+CGG - chr4_1:4332323-4332342 Msa0530290:intron 45.0%
TAATGAATCACCGTGGACAG+TGG - chr4_1:4332528-4332547 Msa0530290:intron 45.0%
CCGAGTCCAAGGCTTATATT+TGG - chr4_1:4332588-4332607 Msa0530290:intron 45.0%
CTAGAACATTTGGTAGGAGC+GGG + chr4_1:4332617-4332636 None:intergenic 45.0%
GCTAGAACATTTGGTAGGAG+CGG + chr4_1:4332618-4332637 None:intergenic 45.0%
TAGTCTATCACCGATCCACA+GGG + chr4_1:4332715-4332734 None:intergenic 45.0%
! CCTTCCACAGCAATTTTCAC+AGG + chr4_1:4333028-4333047 None:intergenic 45.0%
CCTGTGAAAATTGCTGTGGA+AGG - chr4_1:4333025-4333044 Msa0530290:intron 45.0%
ATACCGTTGCTTCCGAAACT+TGG + chr4_1:4333144-4333163 None:intergenic 45.0%
!! CATGGATAGCAGTATTGGTC+AGG - chr4_1:4333266-4333285 Msa0530290:intron 45.0%
TATCACGACACAGCAAACAC+AGG + chr4_1:4333471-4333490 None:intergenic 45.0%
CATTGGAACTGGAGAACACA+TGG - chr4_1:4333584-4333603 Msa0530290:CDS 45.0%
! TTTGGTTTCTGTCCCGACAT+TGG - chr4_1:4333664-4333683 Msa0530290:intron 45.0%
!!! TCTGTCCCGACATTGGTTTT+AGG - chr4_1:4333671-4333690 Msa0530290:intron 45.0%
!! TCCAGTCGGTATTTTGGATC+AGG - chr4_1:4333815-4333834 Msa0530290:intron 45.0%
AGTTCAGGCTGTTGATCCAT+TGG + chr4_1:4333887-4333906 None:intergenic 45.0%
CTGCTCGTACATAATCCTCA+AGG + chr4_1:4333939-4333958 None:intergenic 45.0%
ACTGGATGGCTGTGTATTGA+AGG - chr4_1:4334116-4334135 Msa0530290:intron 45.0%
CTGGATGGCTGTGTATTGAA+GGG - chr4_1:4334117-4334136 Msa0530290:intron 45.0%
CGTGACTCATTCATGAGCTT+TGG + chr4_1:4334445-4334464 None:intergenic 45.0%
! AGGTTCTGGTCGACAAGTTA+GGG - chr4_1:4334483-4334502 Msa0530290:intron 45.0%
ACAAGCGTCTCGCAAAGATA+TGG - chr4_1:4334530-4334549 Msa0530290:intron 45.0%
AAGCAAATTGGAGGAATGGG+TGG - chr4_1:4334658-4334677 Msa0530290:intron 45.0%
AGCAAATTGGAGGAATGGGT+GGG - chr4_1:4334659-4334678 Msa0530290:intron 45.0%
! GACATGATGGGAATGTTTGG+CGG - chr4_1:4334718-4334737 Msa0530290:intron 45.0%
TCTGACCGCAGAAATCTCAA+TGG - chr4_1:4334883-4334902 Msa0530290:CDS 45.0%
CTGACCGCAGAAATCTCAAT+GGG - chr4_1:4334884-4334903 Msa0530290:CDS 45.0%
ATGGCCCATTGAGATTTCTG+CGG + chr4_1:4334891-4334910 None:intergenic 45.0%
TGAGTATGAACCTTCTCCTG+TGG + chr4_1:4335091-4335110 None:intergenic 45.0%
!!! GATTTTATTTTATTTTTTTA+GGG + chr4_1:4327789-4327808 None:intergenic 5.0%
!!! AGATTTTATTTTATTTTTTT+AGG + chr4_1:4327790-4327809 None:intergenic 5.0%
!!! ATAAATATTATTTTAACAAA+TGG + chr4_1:4330355-4330374 None:intergenic 5.0%
!! TTATATCATATAAATATAAT+AGG + chr4_1:4333416-4333435 None:intergenic 5.0%
!! AAATTATATTAAACATAATA+GGG + chr4_1:4334005-4334024 None:intergenic 5.0%
!! TAAATTATATTAAACATAAT+AGG + chr4_1:4334006-4334025 None:intergenic 5.0%
!!! TTTTTTTTTTTTGTATTATT+TGG - chr4_1:4334322-4334341 Msa0530290:intron 5.0%
!!! TTTTTTTTTTTGTATTATTT+GGG - chr4_1:4334323-4334342 Msa0530290:intron 5.0%
ATGGTGCTCGCAGATTTAGG+AGG - chr4_1:4326558-4326577 Msa0530290:three_prime_UTR 50.0%
TGGTGCTCGCAGATTTAGGA+GGG - chr4_1:4326559-4326578 Msa0530290:three_prime_UTR 50.0%
! CAAATAGGGTACTCCGGTCT+GGG + chr4_1:4326975-4326994 None:intergenic 50.0%
! CCGGAGTACCCTATTTGGTT+TGG - chr4_1:4326978-4326997 Msa0530290:CDS 50.0%
! ATGAAGGGGTGTACGTAGGT+CGG + chr4_1:4327033-4327052 None:intergenic 50.0%
! AGAGATGAAGGGGTGTACGT+AGG + chr4_1:4327037-4327056 None:intergenic 50.0%
GCAACAAGATTCACTCGTGG+TGG + chr4_1:4327288-4327307 None:intergenic 50.0%
CTTGATCAAGATGGTGCTCG+CGG - chr4_1:4328012-4328031 Msa0530290:intron 50.0%
AAGATGGTGCTCGCGGATTT+AGG - chr4_1:4328019-4328038 Msa0530290:CDS 50.0%
CCCGCTTTCACTCCCAAAAA+AGG - chr4_1:4330675-4330694 Msa0530290:intron 50.0%
TGTTCGACGCCTACAACTTC+AGG - chr4_1:4332211-4332230 Msa0530290:intron 50.0%
GTTCGACGCCTACAACTTCA+GGG - chr4_1:4332212-4332231 Msa0530290:intron 50.0%
TTCGACGCCTACAACTTCAG+GGG - chr4_1:4332213-4332232 Msa0530290:intron 50.0%
GTAGTCTATCACCGATCCAC+AGG + chr4_1:4332716-4332735 None:intergenic 50.0%
!!! TTTAGTTTTGCGGTGAGGGG+AGG - chr4_1:4332882-4332901 Msa0530290:intron 50.0%
!!! TGGTCAGGCTGCTTTTGATC+AGG - chr4_1:4333281-4333300 Msa0530290:intron 50.0%
GCCTGATCCAAAATACCGAC+TGG + chr4_1:4333819-4333838 None:intergenic 50.0%
!! TCGGTATTTTGGATCAGGCC+AGG - chr4_1:4333820-4333839 Msa0530290:intron 50.0%
!! CGGTATTTTGGATCAGGCCA+GGG - chr4_1:4333821-4333840 Msa0530290:intron 50.0%
TACATTTGACCCCCACTTGG+TGG - chr4_1:4334045-4334064 Msa0530290:intron 50.0%
! CTGTCCTGATCCTTGCCTTT+TGG + chr4_1:4334231-4334250 None:intergenic 50.0%
ATGCGTATAGCTCGAGGTTC+TGG - chr4_1:4334469-4334488 Msa0530290:intron 50.0%
! GAGGTTCTGGTCGACAAGTT+AGG - chr4_1:4334482-4334501 Msa0530290:intron 50.0%
! GAGGGAGGATTTTGCTCATG+TGG + chr4_1:4334627-4334646 None:intergenic 50.0%
! ATGATGGGAATGTTTGGCGG+CGG - chr4_1:4334721-4334740 Msa0530290:intron 50.0%
GGCGAGCAGTAGGTTCTTAA+TGG - chr4_1:4334745-4334764 Msa0530290:intron 50.0%
GAACTTCTCTCCACAGGAGA+AGG - chr4_1:4335078-4335097 Msa0530290:CDS 50.0%
! CCAAATAGGGTACTCCGGTC+TGG + chr4_1:4326976-4326995 None:intergenic 55.0%
! CCAGACCGGAGTACCCTATT+TGG - chr4_1:4326973-4326992 Msa0530290:CDS 55.0%
! GGGTGTACGTAGGTCGGTTT+GGG + chr4_1:4327027-4327046 None:intergenic 55.0%
ATGGTGCTCGCGGATTTAGG+AGG - chr4_1:4328022-4328041 Msa0530290:CDS 55.0%
TGGTGCTCGCGGATTTAGGA+GGG - chr4_1:4328023-4328042 Msa0530290:CDS 55.0%
AGGGGGCGATTCATTTCGGA+AGG - chr4_1:4332327-4332346 Msa0530290:intron 55.0%
ACCGTGGACAGTGGTGAGAT+TGG - chr4_1:4332537-4332556 Msa0530290:intron 55.0%
CCCAATCTCACCACTGTCCA+CGG + chr4_1:4332541-4332560 None:intergenic 55.0%
CCGTGGACAGTGGTGAGATT+GGG - chr4_1:4332538-4332557 Msa0530290:intron 55.0%
CGTGGACAGTGGTGAGATTG+GGG - chr4_1:4332539-4332558 Msa0530290:intron 55.0%
GCGCCAAGTTTCGGAAGCAA+CGG - chr4_1:4333138-4333157 Msa0530290:intron 55.0%
ATGGATGGCCATGCAAAGGG+TGG - chr4_1:4333354-4333373 Msa0530290:intron 55.0%
TGAACCCAGACAAGTCTCCC+TGG + chr4_1:4333841-4333860 None:intergenic 55.0%
TAAGATGGGTCCCATGAGCG+AGG - chr4_1:4333973-4333992 Msa0530290:intron 55.0%
AGGGGGTTAACCTCGCTCAT+GGG + chr4_1:4333986-4334005 None:intergenic 55.0%
TAGGGGGTTAACCTCGCTCA+TGG + chr4_1:4333987-4334006 None:intergenic 55.0%
CGGATGATGCGTATAGCTCG+AGG - chr4_1:4334463-4334482 Msa0530290:intron 55.0%
GCTTTAGCATCTGTGGAGGG+AGG + chr4_1:4334642-4334661 None:intergenic 55.0%
TAATGGCTTATGCGCTGCCG+AGG - chr4_1:4334762-4334781 Msa0530290:intron 55.0%
GGGGTGTACGTAGGTCGGTT+TGG + chr4_1:4327028-4327047 None:intergenic 60.0%
! GGAGTGAAAGCGGGCTTTCC+AGG + chr4_1:4330669-4330688 None:intergenic 60.0%
GATGGCCATGCAAAGGGTGG+TGG - chr4_1:4333357-4333376 Msa0530290:intron 60.0%
TCAGGCCAGGGAGACTTGTC+TGG - chr4_1:4333833-4333852 Msa0530290:intron 60.0%
CAGGCCAGGGAGACTTGTCT+GGG - chr4_1:4333834-4333853 Msa0530290:intron 60.0%
AGGCAAGGATCAGGACAGCC+AGG - chr4_1:4334233-4334252 Msa0530290:intron 60.0%
ATGGGAATGTTTGGCGGCGG+TGG - chr4_1:4334724-4334743 Msa0530290:intron 60.0%
! AGGGTACTCCGGTCTGGGTG+AGG + chr4_1:4326970-4326989 None:intergenic 65.0%
GCGCACCACCACCCTTTGCA+TGG + chr4_1:4333365-4333384 None:intergenic 65.0%
TGGCGGCGGTGGCGAGCAGT+AGG - chr4_1:4334735-4334754 Msa0530290:intron 75.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 4326558 4335112 4326558 ID=Msa0530290;Name=Msa0530290
chr4_1 mRNA 4326558 4335112 4326558 ID=Msa0530290-mRNA-1;Parent=Msa0530290;Name=Msa0530290-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0.77|0.7|1|1|1|10|356|561
chr4_1 exon 4326558 4327245 4326558 ID=Msa0530290-mRNA-1:exon:1321;Parent=Msa0530290-mRNA-1
chr4_1 exon 4327403 4327481 4327403 ID=Msa0530290-mRNA-1:exon:1320;Parent=Msa0530290-mRNA-1
chr4_1 exon 4327676 4327833 4327676 ID=Msa0530290-mRNA-1:exon:1319;Parent=Msa0530290-mRNA-1
chr4_1 exon 4328016 4328116 4328016 ID=Msa0530290-mRNA-1:exon:1318;Parent=Msa0530290-mRNA-1
chr4_1 exon 4328279 4328427 4328279 ID=Msa0530290-mRNA-1:exon:1317;Parent=Msa0530290-mRNA-1
chr4_1 exon 4328511 4328661 4328511 ID=Msa0530290-mRNA-1:exon:1316;Parent=Msa0530290-mRNA-1
chr4_1 exon 4330517 4330670 4330517 ID=Msa0530290-mRNA-1:exon:1315;Parent=Msa0530290-mRNA-1
chr4_1 exon 4330938 4331037 4330938 ID=Msa0530290-mRNA-1:exon:1314;Parent=Msa0530290-mRNA-1
chr4_1 exon 4333418 4333648 4333418 ID=Msa0530290-mRNA-1:exon:1313;Parent=Msa0530290-mRNA-1
chr4_1 exon 4334882 4335112 4334882 ID=Msa0530290-mRNA-1:exon:1312;Parent=Msa0530290-mRNA-1
chr4_1 CDS 4334882 4335112 4334882 ID=Msa0530290-mRNA-1:cds;Parent=Msa0530290-mRNA-1
chr4_1 CDS 4333418 4333648 4333418 ID=Msa0530290-mRNA-1:cds;Parent=Msa0530290-mRNA-1
chr4_1 CDS 4330938 4331037 4330938 ID=Msa0530290-mRNA-1:cds;Parent=Msa0530290-mRNA-1
chr4_1 CDS 4330517 4330670 4330517 ID=Msa0530290-mRNA-1:cds;Parent=Msa0530290-mRNA-1
chr4_1 CDS 4328511 4328661 4328511 ID=Msa0530290-mRNA-1:cds;Parent=Msa0530290-mRNA-1
chr4_1 CDS 4328279 4328427 4328279 ID=Msa0530290-mRNA-1:cds;Parent=Msa0530290-mRNA-1
chr4_1 CDS 4328016 4328116 4328016 ID=Msa0530290-mRNA-1:cds;Parent=Msa0530290-mRNA-1
chr4_1 CDS 4327676 4327833 4327676 ID=Msa0530290-mRNA-1:cds;Parent=Msa0530290-mRNA-1
chr4_1 CDS 4327403 4327481 4327403 ID=Msa0530290-mRNA-1:cds;Parent=Msa0530290-mRNA-1
chr4_1 CDS 4326914 4327245 4326914 ID=Msa0530290-mRNA-1:cds;Parent=Msa0530290-mRNA-1
chr4_1 three_prime_UTR 4326558 4326913 4326558 ID=Msa0530290-mRNA-1:three_prime_utr;Parent=Msa0530290-mRNA-1
Gene Sequence

>Msa0530290

ATGGTGCTCGCAGATTTAGGAGGGAGCATCACGCGTGCTTTAAAGCAAATGAGTAATGCAGCAATCATCGATGAAAATGTATTGAACGAATGTCTCAATGAAATCACTCGTGCTCTTCTTCAATCTGATGTTCAATTCAAGCTTGTTAGAGATATGCAAACCAATATTAAGAAGATTGTTAATCTTGATGATCTTGTTGCTGGTCATAATAAACGGAGAATCATCCGACAAATGGTGCTCGCGGATTTAGGAGGGAGCATTACGCGTGCTCTAAAGCAGATGAGCAATGCAACAATCATCGATGAAAAAGTTTTGAACGAATGTCTCAATGAAATCACTCGCGCTCTTCTTCAATCCGATGTTCAATTCAAGCTTGTTAGAGATATGCAAACCAATATTAAGAAGATTGTTAATCTTGATGATCTTGCTGCTGGTCATAATAAACGTAGAATCATCCAACAAGCTGTGTTCAATGAGCTCTGCAATATCTTGGATCCTGGAAAGCCCGCTTTCACTCCCAAAAAAGGAAAAGCTAGTGTTGTCATGTTTGTTGGTTTACAAGGATCTGGGAAAACCACTACATGTACAAAATATGCATTTTATCATCAAAAGAAAGGCTGGAAGCCAGCTCTAGTATGTGCAGATACATTCAGAGCTGGTGCGTTTGATCAGTTGAAGCAAAATGCAACCAAAGCTAAGATCCCTTTCTATGGAAGCTATATGGAGTCAGATCCTGTGAAAATTGCTGTGGAAGGTGTTGAAAGATTCAAGAAAGAAAACTGTGATCTTATAATTGTTGATACTAGTGGGCGGCACAAACAAGAAGCTGCTCTTTTTGAAGAAATGCGCCAAGTTTCGGAAGCAACGAAACCAGATCTTGTTATCTTTGTCATGGATAGCAGTATTGGTCAGGCTGCTTTTGATCAGGCCCAAGCATTTAAACAGAGTGTTGCAGTTGGGGCTGTCATTATCACAAAAATGGATGGCCATGCAAAGGGTGGTGGTGCGCTTAGTGCTGTTGCGGCTACAAAGAGTCCTGTCATATTCATTGGAACTGGAGAACACATGGATGAATTTGAAGTTTTTGATGTTAAACCATTTGTCAGTCGTCTATTAGGCCAGGGAGACTTGTCTGGGTTCATGAACAAAATCCATGAAGTTGTTCCAATGGATCAACAGCCTGAACTGCTTAATAAGCTGCAAGAAGGAACCTTTACCTTGAGGATTATGTACGAGCAGTTTCAGAATATTCTTAAGATGGGTCCCATGAGCGAGGTTTTTTCTATGCTACCAGGATTTGGCAATGAATTAATACCAAAAGGCAAGGATCAGGACAGCCAGGCAAAAATTAAGCAGTTGGATAGTTCAAACCCAAAGCTCATGAATGAGTCACGGATGATGCGTATAGCTCGAGGTTCTGGTCGACAAGTTAGGGAAGTAATGGAGATGATGGAAGAGTACAAGCGTCTCGCAAAGATATGGAGCAAAATGAAAGGGCTTAAAATACCAAAGAAGGGAGAAATGAGTTCCTTATCTCGAAACATGAATGTCAACCACATGAGCAAAATCCTCCCTCCACAGATGCTAAAGCAAATTGGAGGAATGGGTGGGTTACAAAGCTTGATGAAATCGATGGGATCTAATAAGGACATGATGGGAATGTTTGGCGGCGGTGGCGAGCAGTAG

Protein sequence

>Msa0530290

MVLADLGGSITRALKQMSNAAIIDENVLNECLNEITRALLQSDVQFKLVRDMQTNIKKIVNLDDLVAGHNKRRIIRQMVLADLGGSITRALKQMSNATIIDEKVLNECLNEITRALLQSDVQFKLVRDMQTNIKKIVNLDDLAAGHNKRRIIQQAVFNELCNILDPGKPAFTPKKGKASVVMFVGLQGSGKTTTCTKYAFYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYMESDPVKIAVEGVERFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATKPDLVIFVMDSSIGQAAFDQAQAFKQSVAVGAVIITKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGQGDLSGFMNKIHEVVPMDQQPELLNKLQEGTFTLRIMYEQFQNILKMGPMSEVFSMLPGFGNELIPKGKDQDSQAKIKQLDSSNPKLMNESRMMRIARGSGRQVREVMEMMEEYKRLAKIWSKMKGLKIPKKGEMSSLSRNMNVNHMSKILPPQMLKQIGGMGGLQSLMKSMGSNKDMMGMFGGGGEQ*