AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0696540

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0696540 MtrunA17_Chr4g0048931 95.041 1230 60 1 1 1229 1 1230 0.0 2314
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0696540 AT1G61690.1 47.045 1286 508 37 1 1228 1 1171 0.0 906
Msa0696540 AT1G20110.1 44.262 61 31 2 16 73 450 510 6.62e-11 67.0

Find 274 sgRNAs with CRISPR-Local

Find 432 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTTTGCGTCAAGAAATTT+TGG 0.135004 4_4:-66495452 Msa0696540:CDS
CTTCTTTACGAGGGAATAAT+TGG 0.166408 4_4:-66500070 Msa0696540:CDS
CAGTTGGGCTTCCAGATTCT+TGG 0.186211 4_4:+66495963 None:intergenic
GGCCATCTCTCCGTAGCTTT+AGG 0.215556 4_4:+66495170 None:intergenic
GCCATCTCTCCGTAGCTTTA+GGG 0.246953 4_4:+66495171 None:intergenic
TATCTTGGCTTCCAATGTTT+TGG 0.251942 4_4:+66496335 None:intergenic
TTTGTCAAAGGTTTGAGATT+TGG 0.253265 4_4:+66497130 None:intergenic
GTACTAGTAGCTTCCTTAAC+AGG 0.257183 4_4:+66496105 None:intergenic
TTGGTTAGGGTTCTCGATTT+TGG 0.275780 4_4:+66494922 None:intergenic
GAAATTCTCAACCAGATTCT+TGG 0.290064 4_4:-66498130 Msa0696540:CDS
AATTCAATGCTTACTAATCT+AGG 0.296937 4_4:-66496171 Msa0696540:CDS
AGCTGGTGCTTTGGAATCAC+TGG 0.301108 4_4:-66497180 Msa0696540:CDS
CCCTCTCTTAAAAGCTTTCA+AGG 0.313296 4_4:+66497838 None:intergenic
GCCATTTCTGATAATCTTGA+TGG 0.313917 4_4:-66497245 Msa0696540:CDS
CTGAATTCATTGTTAACATC+TGG 0.325263 4_4:-66494776 Msa0696540:CDS
TGCTCATGATCATGCAGATT+TGG 0.328715 4_4:+66497293 None:intergenic
ATCCACCGCATCTGACTTAT+CGG 0.329738 4_4:+66495069 None:intergenic
CAATCGTCATCGACGAATAC+TGG 0.333635 4_4:-66496711 Msa0696540:CDS
ACAAAACGAGTGCACGATTC+CGG 0.339098 4_4:+66500245 None:intergenic
GATGCTCATCATGTGCAAAA+TGG 0.344797 4_4:+66495839 None:intergenic
AATCGCCTCATTTAAAATAA+AGG 0.344828 4_4:+66494497 None:intergenic
CCCTGAGTTAGCTGGTGCTT+TGG 0.345146 4_4:-66497189 Msa0696540:CDS
TCATCAACTGCCACATCAAC+TGG 0.345429 4_4:+66496243 None:intergenic
AAAGTCAGCAAACTTGAGTT+TGG 0.346435 4_4:-66497588 Msa0696540:CDS
AACGGCTTTGCAGCAGCATT+CGG 0.347511 4_4:+66495250 None:intergenic
ACGGCTTTGCAGCAGCATTC+GGG 0.356227 4_4:+66495251 None:intergenic
AGCAATGGCGATATTGAAAA+AGG 0.361303 4_4:-66497033 Msa0696540:CDS
TTGCGACAGGGACGCAGGGC+TGG 0.361700 4_4:-66498323 Msa0696540:CDS
AGCGGGTCCTACTATTCCTT+TGG 0.366228 4_4:-66495617 Msa0696540:CDS
AGAGCTGGGATGGTCTGATT+TGG 0.366288 4_4:-66497630 Msa0696540:CDS
AACTGAAACAACGAATAGTA+TGG 0.379012 4_4:-66497963 Msa0696540:CDS
AGCATCCATCTCTTCTATCT+TGG 0.379511 4_4:+66496320 None:intergenic
TCTTTCACTCCTTACGGACT+TGG 0.380081 4_4:-66496598 Msa0696540:CDS
CATATGCCAGATCTACTTAC+TGG 0.381048 4_4:-66495718 Msa0696540:CDS
TGCAGAGGAAGTCCTTAAAA+TGG 0.381959 4_4:-66496358 Msa0696540:CDS
AGTTTGAGTTCTGAAATTAC+TGG 0.385842 4_4:-66496927 Msa0696540:CDS
AAAACTATCAGCTTGAATAA+AGG 0.385999 4_4:+66494709 None:intergenic
TGCAAAAGTTTCTGCAATCA+AGG 0.386217 4_4:+66497550 None:intergenic
GCACTCACCTCAGCAGATAA+TGG 0.391318 4_4:+66495817 None:intergenic
ATCACTCGTCGTGCAAGAAC+CGG 0.392721 4_4:-66500264 Msa0696540:five_prime_UTR
GTTCTTCCAGTTGCTTCTCT+AGG 0.393214 4_4:+66497399 None:intergenic
ATTGAGAAGGGAAGGGAAAA+TGG 0.395881 4_4:-66496808 Msa0696540:CDS
TCAGCAACAAGTCCTTGTTT+TGG 0.397436 4_4:+66495926 None:intergenic
GGCTCTCAAAATCTTCCAGT+TGG 0.398361 4_4:+66495947 None:intergenic
GAAGAACAGGAACTCCTTGC+TGG 0.401130 4_4:-66497383 Msa0696540:CDS
TGATGTGTTGGAAACATTGC+TGG 0.402289 4_4:+66495300 None:intergenic
CGTTGATGCCTCCAATTGCC+AGG 0.402559 4_4:-66500045 Msa0696540:CDS
TGAGAGGCAAGCAGATGCTT+TGG 0.402822 4_4:-66497807 Msa0696540:CDS
ACCATCAAGATTATCAGAAA+TGG 0.406595 4_4:+66497244 None:intergenic
CTCAGAAAAGTATCATCAAC+TGG 0.408151 4_4:+66496501 None:intergenic
CAAGTGAAAATCTCACAAAA+AGG 0.409098 4_4:-66495792 Msa0696540:CDS
GCTCTCAAAATCTTCCAGTT+GGG 0.415509 4_4:+66495948 None:intergenic
TGCAAAGACAGGTGAAGAAA+AGG 0.415846 4_4:-66497531 Msa0696540:CDS
ACATTTGACTGGTTTGTGTT+TGG 0.416861 4_4:+66495505 None:intergenic
AGAATTTCATCTTCATCTCT+AGG 0.417922 4_4:+66498145 None:intergenic
TTGCTGGTGGAGGCAGTGTT+TGG 0.418174 4_4:+66495316 None:intergenic
AGCGGAACAACCCTGGCAAT+TGG 0.421722 4_4:+66500034 None:intergenic
AGAGAAGCAACTGGAAGAAC+AGG 0.422268 4_4:-66497396 Msa0696540:CDS
CAAGAATCTGGAAGCCCAAC+TGG 0.425253 4_4:-66495962 Msa0696540:CDS
AAGTCAATGCTGCTACTTCA+AGG 0.427028 4_4:-66494743 Msa0696540:three_prime_UTR
CTAGTACTGTCACAACTTCA+AGG 0.427339 4_4:-66496089 Msa0696540:CDS
TTCCCTCGTAAAGAAGGCTT+TGG 0.427802 4_4:+66500077 None:intergenic
ACGCAAAGCCATTCTTTGTT+GGG 0.429998 4_4:+66498415 None:intergenic
AGTGACCGATGAGGATTTGA+TGG 0.430553 4_4:-66497213 Msa0696540:CDS
TGCGACAGGGACGCAGGGCT+GGG 0.431204 4_4:-66498322 Msa0696540:CDS
TACTTCAGAACTTCAAGAGC+TGG 0.434040 4_4:-66497645 Msa0696540:CDS
CACGCAAAGCCATTCTTTGT+TGG 0.435300 4_4:+66498414 None:intergenic
AAGAATGGCTTTGCGTGGAC+AGG 0.438151 4_4:-66498408 Msa0696540:CDS
TGTGCAAAATGGGAGTTTGC+AGG 0.440792 4_4:+66495850 None:intergenic
TGTTCCAGATTATGCTTCTC+AGG 0.442874 4_4:-66495482 Msa0696540:CDS
TGAAGCGCAGTTGGAGGAGT+TGG 0.444540 4_4:-66495104 Msa0696540:CDS
TGACCGTTTCAAGTTGCAAC+AGG 0.444966 4_4:-66495218 Msa0696540:CDS
CAACCTCAGTCTTGTCAATC+CGG 0.445432 4_4:+66497504 None:intergenic
GGCCTGTCGAAGTTCGTCCC+TGG 0.446077 4_4:+66495378 None:intergenic
CAATTATTCCCTCGTAAAGA+AGG 0.446224 4_4:+66500071 None:intergenic
TTAGAGAAGAGGTTGGAGGA+TGG 0.449154 4_4:-66495349 Msa0696540:CDS
GCGGTTAGTTTGAAACGATC+AGG 0.449589 4_4:-66494854 Msa0696540:CDS
GCTCTCTTTGAATCATCAAC+CGG 0.451246 4_4:+66496859 None:intergenic
AGCATATCTTTCACTCCTTA+CGG 0.451437 4_4:-66496604 Msa0696540:CDS
GTTGGAGGAGTTGGCTGCTC+AGG 0.452082 4_4:-66495095 Msa0696540:CDS
CCATTACCAGTAAGTAGATC+TGG 0.452648 4_4:+66495712 None:intergenic
AAAGACATTTCTGTTGAGTC+TGG 0.453344 4_4:-66497716 Msa0696540:CDS
TCGTCCTGAGAAGCATAATC+TGG 0.454913 4_4:+66495478 None:intergenic
TTGAACAACATTTGATGTGT+TGG 0.459609 4_4:+66495288 None:intergenic
AAAGGAAGGCACTTGCTTTG+AGG 0.464115 4_4:-66496029 Msa0696540:CDS
TTATCTGCTCTGAAAGCTAC+TGG 0.464175 4_4:-66495010 Msa0696540:CDS
GAGAACTCTTAGCGTTGAAA+AGG 0.464290 4_4:-66496047 Msa0696540:CDS
GTAAGCATTGAATTCAATGC+TGG 0.472004 4_4:+66496180 None:intergenic
ATTGCTCATAGCTCCTCAAC+TGG 0.473098 4_4:-66495751 Msa0696540:CDS
TCCCTTCCCGTCTTAAAGCA+AGG 0.473525 4_4:+66496391 None:intergenic
GTTACGTCAGCAAGCTTTAG+CGG 0.475113 4_4:-66497909 Msa0696540:CDS
AATCTGGAACAACATTTGAC+TGG 0.475130 4_4:+66495494 None:intergenic
CCAGATCTACTTACTGGTAA+TGG 0.475511 4_4:-66495712 Msa0696540:CDS
AAATTTCTTGACGCAAAGAA+AGG 0.475848 4_4:+66495455 None:intergenic
AGCGCGATTTGAGTTGCGAC+AGG 0.475901 4_4:-66498336 Msa0696540:CDS
CAGAAGATGTTAGCGAAGAT+CGG 0.476728 4_4:-66500107 Msa0696540:exon
AGCAGAAGCTGAGTTAGAAC+GGG 0.476768 4_4:-66495137 Msa0696540:CDS
CAGCTTCTGCTTCCTCTGTT+CGG 0.477351 4_4:+66495149 None:intergenic
GTTAACCTTGCGATTGATGA+AGG 0.479727 4_4:+66500004 None:intergenic
CCCTTCCCGTCTTAAAGCAA+GGG 0.482007 4_4:+66496392 None:intergenic
GCTTGCTGACGTAACTCATC+AGG 0.482310 4_4:+66497917 None:intergenic
TCAGAGCAGATAAGAGTTGA+GGG 0.485201 4_4:+66495020 None:intergenic
ACTCCTGTTGCAACTTGAAA+CGG 0.485424 4_4:+66495215 None:intergenic
CATAAAAGAAGAACCTGTTA+AGG 0.489001 4_4:-66496118 Msa0696540:CDS
GGATTGTTCGAAGATTTAGA+AGG 0.489464 4_4:+66496552 None:intergenic
GCATCTTCTTCAAGTACTAC+AGG 0.490304 4_4:-66498028 Msa0696540:CDS
GGCACTTGCTTTGAGGCGCA+AGG 0.490504 4_4:-66496022 Msa0696540:CDS
CCTCGTAAAGAAGGCTTTGG+TGG 0.490657 4_4:+66500080 None:intergenic
GCAAAGACAGGTGAAGAAAA+GGG 0.490919 4_4:-66497530 Msa0696540:CDS
CAGGGACGCAGGGCTGGGAG+AGG 0.492123 4_4:-66498317 Msa0696540:intron
TGAATTCATTGTTAACATCT+GGG 0.492329 4_4:-66494775 Msa0696540:CDS
TGAATGTTGTATCATATGTT+TGG 0.492344 4_4:-66494523 Msa0696540:three_prime_UTR
GAGGAGTCCAAAGGAATAGT+AGG 0.493103 4_4:+66495610 None:intergenic
CTTTCACTCCTTACGGACTT+GGG 0.493296 4_4:-66496597 Msa0696540:CDS
GCCTCTTCTAGCTTCTTACA+AGG 0.494213 4_4:+66498359 None:intergenic
AGGAAAACAAGCTGAAGCCT+TGG 0.495773 4_4:-66494834 Msa0696540:CDS
AAACGGTCACGACTAGTAAA+CGG 0.495896 4_4:+66495232 None:intergenic
TTCTTTACGAGGGAATAATT+GGG 0.496857 4_4:-66500069 Msa0696540:CDS
AGAAGGTTCTTGCATTGAGA+AGG 0.498127 4_4:-66496821 Msa0696540:CDS
ATGCAGCGCTAACTGATCTC+TGG 0.498371 4_4:+66498047 None:intergenic
CACTCCTTACGGACTTGGGT+TGG 0.500597 4_4:-66496593 Msa0696540:CDS
TAAGCTTGCAGAAGCTAAAG+AGG 0.501280 4_4:-66497441 Msa0696540:CDS
TCATCTGAAAATTGTAAATG+TGG 0.502699 4_4:-66494564 Msa0696540:three_prime_UTR
GTGCTTTGGAATCACTGGGT+TGG 0.504177 4_4:-66497175 Msa0696540:CDS
AGAAGATGTTAGCGAAGATC+GGG 0.504948 4_4:-66500106 Msa0696540:exon
GAAGAATAATGTACAGGTTG+AGG 0.507140 4_4:-66496295 Msa0696540:CDS
GGCAATTGAAGCGCAGTTGG+AGG 0.509228 4_4:-66495110 Msa0696540:CDS
TGAGCATCAGCTGATGGAGA+TGG 0.510663 4_4:-66496748 Msa0696540:CDS
CAACCTCTTCTCTAACAGCT+TGG 0.511169 4_4:+66495357 None:intergenic
GCCACTACGACCTTTGTCAC+TGG 0.511282 4_4:+66498069 None:intergenic
ATGCTCATCATGTGCAAAAT+GGG 0.511451 4_4:+66495840 None:intergenic
TATAAAATTCTGAAAGGAGA+CGG 0.512824 4_4:-66497875 Msa0696540:CDS
TGAAAATTGAAACTATTGAA+TGG 0.513382 4_4:+66494584 None:intergenic
TCCAAAGCACCAGCTAACTC+AGG 0.514575 4_4:+66497188 None:intergenic
AAGCAGAAGCTGAGTTAGAA+CGG 0.518122 4_4:-66495138 Msa0696540:CDS
CAGAACTTCAAGAGCTGGGA+TGG 0.518671 4_4:-66497640 Msa0696540:CDS
CCTTAAAATGGCCAAAACAT+TGG 0.518990 4_4:-66496346 Msa0696540:CDS
TTGAGTTGCGACAGGGACGC+AGG 0.519807 4_4:-66498328 Msa0696540:CDS
TAGCAACGCTTCTTTGTCAA+AGG 0.522640 4_4:+66497118 None:intergenic
AGCCAGGGACGAACTTCGAC+AGG 0.523706 4_4:-66495380 Msa0696540:CDS
TTTAAGACGGGAAGGGAAAA+CGG 0.523794 4_4:-66496385 Msa0696540:CDS
TCCTCAGACTGGTAAAGATA+AGG 0.524696 4_4:-66497675 Msa0696540:CDS
AAGTTGTACCCAACAAAGAA+TGG 0.524769 4_4:-66498423 Msa0696540:CDS
AGAGAGGGAAGGAGCTTGAG+AGG 0.525287 4_4:-66497823 Msa0696540:CDS
GAAAGTGACTTAAACAACAC+TGG 0.526972 4_4:-66496999 Msa0696540:CDS
TTGATGGACCCTGAGTTAGC+TGG 0.527871 4_4:-66497197 Msa0696540:CDS
AAAGGCCCTTGCTTTAAGAC+GGG 0.530144 4_4:-66496397 Msa0696540:CDS
GAATACAAATGTCATCTGAA+TGG 0.530151 4_4:+66494445 None:intergenic
TGTTTCTGCTGTAGTAGAAG+AGG 0.530908 4_4:+66500176 None:intergenic
GTCAGCAAACTTGAGTTTGG+AGG 0.531192 4_4:-66497585 Msa0696540:CDS
GCTGGTGCTTTGGAATCACT+GGG 0.535449 4_4:-66497179 Msa0696540:CDS
GGCACGTCGAAGAGCATCCA+AGG 0.535888 4_4:+66494817 None:intergenic
AAGGAAAACTAACAGAAGCC+AGG 0.536128 4_4:-66495396 Msa0696540:CDS
TTCAGAGCAGATAAGAGTTG+AGG 0.537619 4_4:+66495019 None:intergenic
CAGCACCACTGTAGAAGGTG+TGG 0.537683 4_4:-66498461 Msa0696540:CDS
ATGTGGCAGTTGATGAAGAA+AGG 0.539322 4_4:-66496236 Msa0696540:CDS
ATAAAATTCTGAAAGGAGAC+GGG 0.540491 4_4:-66497874 Msa0696540:CDS
AAATAATAATGCCGCTTCCA+CGG 0.543317 4_4:-66496895 Msa0696540:CDS
AAAGTAAAGCAGAAATTCAG+AGG 0.543735 4_4:-66496440 Msa0696540:CDS
AACGTCAAGCCCTAAAGCTA+CGG 0.544391 4_4:-66495180 Msa0696540:CDS
GAAAGGCCCTTGCTTTAAGA+CGG 0.545586 4_4:-66496398 Msa0696540:CDS
ACTTCAGAACTTCAAGAGCT+GGG 0.547171 4_4:-66497644 Msa0696540:CDS
GGGAGAAATAGAAGAGGCTG+AGG 0.548311 4_4:-66496001 Msa0696540:CDS
TGAATTGAGCGGAACAACCC+TGG 0.551547 4_4:+66500027 None:intergenic
GAATAGTATGGCTGTTGATG+TGG 0.551719 4_4:-66497951 Msa0696540:CDS
GAAGGTTCTTGCATTGAGAA+GGG 0.551906 4_4:-66496820 Msa0696540:CDS
GACTTCTACTCGCTGCATGC+AGG 0.553919 4_4:+66496682 None:intergenic
GCCCTTGCTTTAAGACGGGA+AGG 0.554192 4_4:-66496393 Msa0696540:CDS
CAAGGTTCACATATACGTAC+AGG 0.556070 4_4:+66498377 None:intergenic
GTAAGGAGTGAAAGATATGC+TGG 0.556679 4_4:+66496606 None:intergenic
GCAGTTGCTTTGAAAAGAGA+AGG 0.558654 4_4:-66495415 Msa0696540:CDS
GTTCTTGCATTGAGAAGGGA+AGG 0.558660 4_4:-66496816 Msa0696540:CDS
AGCTGAGTTAGAACGGGCAA+AGG 0.559624 4_4:-66495131 Msa0696540:CDS
AATCTAGGATGGAAGGATGA+AGG 0.560283 4_4:-66496156 Msa0696540:CDS
AAAGGCAATTGAAGCGCAGT+TGG 0.560739 4_4:-66495113 Msa0696540:CDS
TTCAGTTAATTCATCTCAAG+CGG 0.560902 4_4:-66495635 Msa0696540:CDS
CTTGTTGCTGAATGCATCCA+AGG 0.561407 4_4:-66495914 Msa0696540:CDS
GCTTACTAATCTAGGATGGA+AGG 0.561754 4_4:-66496163 Msa0696540:CDS
GCCCTAAAGCTACGGAGAGA+TGG 0.561928 4_4:-66495172 Msa0696540:CDS
AGCACCACTGTAGAAGGTGT+GGG 0.564062 4_4:-66498460 Msa0696540:CDS
CTTCAATTCTCCAGTTGATG+TGG 0.564266 4_4:-66496253 Msa0696540:CDS
CCACCAAAGCCTTCTTTACG+AGG 0.565763 4_4:-66500080 Msa0696540:CDS
GGACATGGTTGTTTCAGAAG+AGG 0.567833 4_4:-66496214 Msa0696540:CDS
TTCAGCTAAGGAAAGCGGCT+CGG 0.568308 4_4:-66497781 Msa0696540:CDS
GGCTCTAACGTTGAAGCGTG+AGG 0.568601 4_4:-66497465 Msa0696540:CDS
AGGGAAAACGGAGGATGCAG+AGG 0.569218 4_4:-66496373 Msa0696540:CDS
CATTCCAACCCAAGTCCGTA+AGG 0.571820 4_4:+66496589 None:intergenic
TCAGCAAACTTGAGTTTGGA+GGG 0.572121 4_4:-66497584 Msa0696540:CDS
ACAAAGTCACTTCCTCAGAC+TGG 0.572322 4_4:-66497686 Msa0696540:CDS
CAGGTGAAGAAAAGGGCAGC+CGG 0.572523 4_4:-66497523 Msa0696540:CDS
CCTCTAGTTGAGGAAGGAAG+TGG 0.572860 4_4:-66496660 Msa0696540:CDS
ATGCATAGAGTGGCCAGTTG+AGG 0.573144 4_4:+66495738 None:intergenic
GGAAGCCAAGATAGAAGAGA+TGG 0.573762 4_4:-66496325 Msa0696540:CDS
GGAACAACCCTGGCAATTGG+AGG 0.574373 4_4:+66500037 None:intergenic
TGTAAATGTGGTTCTAAACA+TGG 0.576409 4_4:-66494552 Msa0696540:three_prime_UTR
CGGCTTTGCAGCAGCATTCG+GGG 0.576851 4_4:+66495252 None:intergenic
TGCTCTGAAGAATAATGTAC+AGG 0.578058 4_4:-66496301 Msa0696540:CDS
ATCAGCATTAATACGCGGCA+TGG 0.578083 4_4:-66497336 Msa0696540:CDS
ATTCACCTTCATCAATCGCA+AGG 0.579513 4_4:-66500009 Msa0696540:intron
ATGCTTTGGAAATTCAGCTA+AGG 0.580873 4_4:-66497793 Msa0696540:CDS
TTATCATCATATGTCTTCGA+AGG 0.581242 4_4:+66496531 None:intergenic
AGAATGGCTTTGCGTGGACA+GGG 0.583680 4_4:-66498407 Msa0696540:CDS
CAATGCTTACTAATCTAGGA+TGG 0.583962 4_4:-66496167 Msa0696540:CDS
GCTCTTAATCAAAAGCGAGC+AGG 0.584439 4_4:-66497068 Msa0696540:CDS
TAAGCATTGAATTCAATGCT+GGG 0.587214 4_4:+66496181 None:intergenic
TGCCGATAAGTCAGATGCGG+TGG 0.587474 4_4:-66495071 Msa0696540:CDS
AGTAAGTATAAAATTCTGAA+AGG 0.588864 4_4:-66497881 Msa0696540:CDS
AGGCCAAGCTGTTAGAGAAG+AGG 0.593828 4_4:-66495360 Msa0696540:CDS
AGAAGTCCTCTAGTTGAGGA+AGG 0.594048 4_4:-66496666 Msa0696540:CDS
TCCTTATCTTTACCAGTCTG+AGG 0.594057 4_4:+66497674 None:intergenic
CACCAAAGCCTTCTTTACGA+GGG 0.594410 4_4:-66500079 Msa0696540:CDS
GCTGTTAGAGAAGAGGTTGG+AGG 0.596896 4_4:-66495353 Msa0696540:CDS
GTTGATGCCTCCAATTGCCA+GGG 0.598442 4_4:-66500044 Msa0696540:CDS
GAGTAGAAGTCCTCTAGTTG+AGG 0.600375 4_4:-66496670 Msa0696540:CDS
GGAAATTCAGCTAAGGAAAG+CGG 0.600558 4_4:-66497786 Msa0696540:CDS
TCAGTTAATTCATCTCAAGC+GGG 0.600749 4_4:-66495634 Msa0696540:CDS
AGTTCTTGAGCATCAGCTGA+TGG 0.601408 4_4:-66496754 Msa0696540:CDS
TGAGTTGCGACAGGGACGCA+GGG 0.605256 4_4:-66498327 Msa0696540:CDS
GTTCCGTCTGAATCATCTCA+CGG 0.608299 4_4:-66495880 Msa0696540:CDS
AGGTAATACTGAAGAAGCAA+TGG 0.609705 4_4:-66497048 Msa0696540:CDS
GCACTTGCTTTGAGGCGCAA+GGG 0.610522 4_4:-66496021 Msa0696540:CDS
ACTATCAGCTTGAATAAAGG+AGG 0.611918 4_4:+66494712 None:intergenic
CAAGCTGTTAGAGAAGAGGT+TGG 0.612824 4_4:-66495356 Msa0696540:CDS
AGGAAAACTAACAGAAGCCA+GGG 0.615723 4_4:-66495395 Msa0696540:CDS
AAGCAATCAACCAGTGACAA+AGG 0.616395 4_4:-66498079 Msa0696540:CDS
GTTGGAAACATTGCTGGTGG+AGG 0.616993 4_4:+66495306 None:intergenic
TGTGGCAGTTGATGAAGAAA+GGG 0.617619 4_4:-66496235 Msa0696540:CDS
CAACAAAGAATGGCTTTGCG+TGG 0.621792 4_4:-66498413 Msa0696540:CDS
GTCACAACTTCAAGGAACAA+AGG 0.622653 4_4:-66496081 Msa0696540:CDS
AAAGTGACTTAAACAACACT+GGG 0.624537 4_4:-66496998 Msa0696540:CDS
ACGTAACTCATCAGGAGTGG+TGG 0.624698 4_4:+66497925 None:intergenic
GCACCACTGTAGAAGGTGTG+GGG 0.625379 4_4:-66498459 Msa0696540:CDS
GCTCTAACGTTGAAGCGTGA+GGG 0.625690 4_4:-66497464 Msa0696540:CDS
AGGGTCCATCAAATCCTCAT+CGG 0.627532 4_4:+66497208 None:intergenic
CCACTTCCTTCCTCAACTAG+AGG 0.628017 4_4:+66496660 None:intergenic
ACGGAGAGATGGCCGAACAG+AGG 0.628540 4_4:-66495161 Msa0696540:CDS
TTTCCGTGAGATGATTCAGA+CGG 0.629170 4_4:+66495877 None:intergenic
AATCTGCATGATCATGAGCA+TGG 0.631390 4_4:-66497290 Msa0696540:CDS
CAGAATCTTCAGCACCAGCA+AGG 0.632957 4_4:+66497369 None:intergenic
ACTCTTAGCGTTGAAAAGGA+AGG 0.636692 4_4:-66496043 Msa0696540:CDS
ACCTTGTAAGAAGCTAGAAG+AGG 0.636754 4_4:-66498360 Msa0696540:CDS
GTTGCCTTCTGGAAACATGT+CGG 0.637060 4_4:-66497750 Msa0696540:CDS
GAAAGGAGACGGGAAATCTG+AGG 0.642954 4_4:-66497864 Msa0696540:CDS
CCAAAGCACCAGCTAACTCA+GGG 0.645234 4_4:+66497189 None:intergenic
ACCAGTGACAAAGGTCGTAG+TGG 0.645600 4_4:-66498070 Msa0696540:CDS
AATTCAGTCATTGAAAAGAG+AGG 0.645693 4_4:-66497090 Msa0696540:CDS
CCCTTGCTTTAAGACGGGAA+GGG 0.647794 4_4:-66496392 Msa0696540:CDS
AATAGTATGGCTGTTGATGT+GGG 0.649232 4_4:-66497950 Msa0696540:CDS
CACCACTGTAGAAGGTGTGG+GGG 0.651612 4_4:-66498458 Msa0696540:CDS
GCGCGATTTGAGTTGCGACA+GGG 0.652062 4_4:-66498335 Msa0696540:CDS
AGATTCACTGAGGAGTCCAA+AGG 0.654296 4_4:+66495601 None:intergenic
TAGTAGAAGAGGATTAACGA+AGG 0.654716 4_4:+66500187 None:intergenic
AAGTAAAGCAGAAATTCAGA+GGG 0.660938 4_4:-66496439 Msa0696540:CDS
GATCTGGCATATGCATAGAG+TGG 0.663140 4_4:+66495728 None:intergenic
GGTGGATGATGTGAGTGTTG+AGG 0.663208 4_4:-66495053 Msa0696540:CDS
TTCGTCGATGACGATTGACT+CGG 0.671976 4_4:+66496717 None:intergenic
CTGACGTAACTCATCAGGAG+TGG 0.672100 4_4:+66497922 None:intergenic
TTCTTGCATTGAGAAGGGAA+GGG 0.677335 4_4:-66496815 Msa0696540:CDS
ATATCCGACATGTTTCCAGA+AGG 0.678237 4_4:+66497746 None:intergenic
CCAGATTCTTGGTCAAAACG+AGG 0.680619 4_4:-66498119 Msa0696540:CDS
GCGCAAGGGAGAAATAGAAG+AGG 0.680799 4_4:-66496007 Msa0696540:CDS
TGTGTTGGAAACATTGCTGG+TGG 0.682302 4_4:+66495303 None:intergenic
GGATGCCGATAAGTCAGATG+CGG 0.687597 4_4:-66495074 Msa0696540:CDS
AAAAGTTTCTGCAATCAAGG+AGG 0.697378 4_4:+66497553 None:intergenic
TAATTTAGAAGTGACCGATG+AGG 0.698604 4_4:-66497222 Msa0696540:CDS
ATGAAGCAGAAGAAGAAATG+CGG 0.709038 4_4:-66496785 Msa0696540:CDS
GTCTTGGCTGAGATTCACTG+AGG 0.710997 4_4:+66495591 None:intergenic
AGTTGATGAAGAAAGGGACA+TGG 0.716294 4_4:-66496229 Msa0696540:CDS
TGAGCATCCATTATCTGCTG+AGG 0.716468 4_4:-66495824 Msa0696540:CDS
CAGCCGGATTGACAAGACTG+AGG 0.720198 4_4:-66497507 Msa0696540:CDS
ATTGATGAAGGTGAATTGAG+CGG 0.728556 4_4:+66500016 None:intergenic
GAGCTATCAGCATTAATACG+CGG 0.732772 4_4:-66497341 Msa0696540:CDS
AAGACGGGAAGGGAAAACGG+AGG 0.744098 4_4:-66496382 Msa0696540:CDS
TAATAATGCCGCTTCCACGG+TGG 0.746076 4_4:-66496892 Msa0696540:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AACTAATTTTACAATATTTA+AGG + chr4_4:66495893-66495912 None:intergenic 10.0%
!! TAAATATTGTAAAATTAGTT+AGG - chr4_4:66495893-66495912 Msa0696540:CDS 10.0%
!! TTGATAAAACAATTAAAACT+GGG + chr4_4:66496081-66496100 None:intergenic 15.0%
!! TTTGATAAAACAATTAAAAC+TGG + chr4_4:66496082-66496101 None:intergenic 15.0%
!! CAAAATTCCAAAATTTAATT+GGG + chr4_4:66496257-66496276 None:intergenic 15.0%
!! TCAAAATTCCAAAATTTAAT+TGG + chr4_4:66496258-66496277 None:intergenic 15.0%
!! TAAATGATAGAGAACAATAT+AGG - chr4_4:66494910-66494929 Msa0696540:CDS 20.0%
!! AAAGAACTATAAAGAGAAAA+TGG + chr4_4:66495471-66495490 None:intergenic 20.0%
!!! ACAAAATAGGCTTTTAAATA+AGG + chr4_4:66495540-66495559 None:intergenic 20.0%
!! ACTTATGTAATGAAGAAAAT+AGG + chr4_4:66495744-66495763 None:intergenic 20.0%
!!! TTCATTACATAAGTTTTGTT+TGG - chr4_4:66495750-66495769 Msa0696540:CDS 20.0%
!!! TCTCTTCATTTAATTTTCTA+TGG - chr4_4:66495835-66495854 Msa0696540:CDS 20.0%
!! AAGTGAAAATTGTATAGATT+TGG + chr4_4:66495939-66495958 None:intergenic 20.0%
!! GTTAATTTCATGATTCTATA+TGG - chr4_4:66496150-66496169 Msa0696540:CDS 20.0%
!! AGTAAGTATAAAATTCTGAA+AGG - chr4_4:66496869-66496888 Msa0696540:CDS 20.0%
!!! TTTTGATTTTGATAATCTCT+TGG - chr4_4:66497483-66497502 Msa0696540:CDS 20.0%
!! AATTAAAGAAGAAAAACTGA+AGG - chr4_4:66499874-66499893 Msa0696540:intron 20.0%
!! TGAAAATTGAAACTATTGAA+TGG + chr4_4:66500169-66500188 None:intergenic 20.0%
!!! CAACACTATTTTGTTGATTT+TGG - chr4_4:66494595-66494614 Msa0696540:three_prime_UTR 25.0%
! AATTACTCTTGTTAATGCAA+CGG + chr4_4:66495024-66495043 None:intergenic 25.0%
! AAATGACAAGTTGTTAAACA+TGG + chr4_4:66495102-66495121 None:intergenic 25.0%
! TAAAAAGTGAATTGTCTCTA+GGG + chr4_4:66495203-66495222 None:intergenic 25.0%
! ATAAAAAGTGAATTGTCTCT+AGG + chr4_4:66495204-66495223 None:intergenic 25.0%
! CATTGAATAACTAATGTATC+TGG - chr4_4:66495227-66495246 Msa0696540:CDS 25.0%
!! TAGGCTTTTAAATAAGGTTA+AGG + chr4_4:66495534-66495553 None:intergenic 25.0%
!! TAAAAGCCTATTTTGTGATA+AGG - chr4_4:66495544-66495563 Msa0696540:CDS 25.0%
! TAAAGACCTTATCACAAAAT+AGG + chr4_4:66495553-66495572 None:intergenic 25.0%
!!! GTTAGTTTTGTTAGGTTTAA+AGG - chr4_4:66495659-66495678 Msa0696540:CDS 25.0%
!! TTGTTAGGTTTAAAGGTTTT+TGG - chr4_4:66495666-66495685 Msa0696540:CDS 25.0%
! GAAAATTAAATGAAGAGAAG+AGG + chr4_4:66495833-66495852 None:intergenic 25.0%
! TGAAAATTGTATAGATTTGG+TGG + chr4_4:66495936-66495955 None:intergenic 25.0%
!! TATACCTTTAGTTTAACCAA+AGG + chr4_4:66496122-66496141 None:intergenic 25.0%
! CAGATTATAATAAGCAAACA+TGG + chr4_4:66496209-66496228 None:intergenic 25.0%
!!! ATGGTTTTAACAAAAATGAG+GGG + chr4_4:66496463-66496482 None:intergenic 25.0%
!!! CATGGTTTTAACAAAAATGA+GGG + chr4_4:66496464-66496483 None:intergenic 25.0%
!!! TCATGGTTTTAACAAAAATG+AGG + chr4_4:66496465-66496484 None:intergenic 25.0%
!! TATAAAATTCTGAAAGGAGA+CGG - chr4_4:66496875-66496894 Msa0696540:CDS 25.0%
!! GATTTGGAAAATGTATTTTC+AGG + chr4_4:66497607-66497626 None:intergenic 25.0%
!!! ATTTCTGCTTTACTTTTTCT+TGG + chr4_4:66498306-66498325 None:intergenic 25.0%
! AATTCAATGCTTACTAATCT+AGG - chr4_4:66498579-66498598 Msa0696540:intron 25.0%
! CAAAAAGAAGAATATAAAGC+AGG - chr4_4:66499092-66499111 Msa0696540:intron 25.0%
!!! GAATGTTGTTTTTGTATATC+TGG + chr4_4:66499184-66499203 None:intergenic 25.0%
!!! AAGAAATTTTGGCTCATAAA+AGG - chr4_4:66499309-66499328 Msa0696540:intron 25.0%
! TGAATTCATTGTTAACATCT+GGG - chr4_4:66499975-66499994 Msa0696540:intron 25.0%
! AAAACTATCAGCTTGAATAA+AGG + chr4_4:66500044-66500063 None:intergenic 25.0%
!! AATTTGTGCATTTTCATTGA+AGG - chr4_4:66500087-66500106 Msa0696540:CDS 25.0%
! TCATCTGAAAATTGTAAATG+TGG - chr4_4:66500186-66500205 Msa0696540:five_prime_UTR 25.0%
! TGAATGTTGTATCATATGTT+TGG - chr4_4:66500227-66500246 Msa0696540:five_prime_UTR 25.0%
!! AATCGCCTCATTTAAAATAA+AGG + chr4_4:66500256-66500275 None:intergenic 25.0%
TTCTTTACGAGGGAATAATT+GGG - chr4_4:66494681-66494700 Msa0696540:three_prime_UTR 30.0%
AGTCACTGAAATTCAAATCA+TGG + chr4_4:66494849-66494868 None:intergenic 30.0%
CAATGTAATTCATCGGTATA+TGG + chr4_4:66494987-66495006 None:intergenic 30.0%
TTAGCAGCAATGTAATTCAT+CGG + chr4_4:66494994-66495013 None:intergenic 30.0%
! AATTTTGCTTGTTTCATCGT+AGG - chr4_4:66495147-66495166 Msa0696540:CDS 30.0%
TGAAACACAAACAATATAGC+CGG + chr4_4:66495348-66495367 None:intergenic 30.0%
TATCAACAAGTAAGCTCATA+GGG - chr4_4:66495617-66495636 Msa0696540:CDS 30.0%
!!! TTGAGTAGGTTAGTTTTGTT+AGG - chr4_4:66495651-66495670 Msa0696540:CDS 30.0%
!! TAGGTTTAAAGGTTTTTGGA+TGG - chr4_4:66495670-66495689 Msa0696540:CDS 30.0%
CAAAAGTCTGTTTAGCTAAA+AGG + chr4_4:66495709-66495728 None:intergenic 30.0%
GTAATGAAGAAAATAGGTCA+AGG + chr4_4:66495738-66495757 None:intergenic 30.0%
!!! ACATAAGTTTTGTTTGGTCT+AGG - chr4_4:66495756-66495775 Msa0696540:CDS 30.0%
TAGGTTTGAGTACATTAGTT+TGG - chr4_4:66495775-66495794 Msa0696540:CDS 30.0%
! TTGAGTACATTAGTTTGGTT+TGG - chr4_4:66495780-66495799 Msa0696540:CDS 30.0%
GGAAGCTAAACATACAATTA+GGG + chr4_4:66496023-66496042 None:intergenic 30.0%
TAGTGAGTTATCCAATCTAA+GGG + chr4_4:66496044-66496063 None:intergenic 30.0%
ATAGTGAGTTATCCAATCTA+AGG + chr4_4:66496045-66496064 None:intergenic 30.0%
TTTAAGCTTCATAGAACCTT+TGG - chr4_4:66496103-66496122 Msa0696540:CDS 30.0%
AGAACCTTTGGTTAAACTAA+AGG - chr4_4:66496115-66496134 Msa0696540:CDS 30.0%
TATATGGAAAACGAGATCTT+GGG - chr4_4:66496166-66496185 Msa0696540:CDS 30.0%
TTTAATTGGGACAAAGGATT+TGG + chr4_4:66496244-66496263 None:intergenic 30.0%
CCAAAATTTAATTGGGACAA+AGG + chr4_4:66496250-66496269 None:intergenic 30.0%
! CCTTTGTCCCAATTAAATTT+TGG - chr4_4:66496247-66496266 Msa0696540:CDS 30.0%
!!! TGGTTTTAACAAAAATGAGG+GGG + chr4_4:66496462-66496481 None:intergenic 30.0%
AGAGTGAATATTCAAAAGCA+TGG + chr4_4:66496557-66496576 None:intergenic 30.0%
ATATTCACTCTAATTTCTCC+AGG - chr4_4:66496566-66496585 Msa0696540:CDS 30.0%
AGAATTTCATCTTCATCTCT+AGG + chr4_4:66496608-66496627 None:intergenic 30.0%
! TACTACAGGATTTTCTATTC+AGG - chr4_4:66496736-66496755 Msa0696540:CDS 30.0%
AACTGAAACAACGAATAGTA+TGG - chr4_4:66496787-66496806 Msa0696540:CDS 30.0%
! ATAAAATTCTGAAAGGAGAC+GGG - chr4_4:66496876-66496895 Msa0696540:CDS 30.0%
ACCATCAAGATTATCAGAAA+TGG + chr4_4:66497509-66497528 None:intergenic 30.0%
! TTTGTCAAAGGTTTGAGATT+TGG + chr4_4:66497623-66497642 None:intergenic 30.0%
AATTCAGTCATTGAAAAGAG+AGG - chr4_4:66497660-66497679 Msa0696540:CDS 30.0%
AAAGTGACTTAAACAACACT+GGG - chr4_4:66497752-66497771 Msa0696540:CDS 30.0%
!! AGTTTGAGTTCTGAAATTAC+TGG - chr4_4:66497823-66497842 Msa0696540:CDS 30.0%
! GCTTTTGAATTCGAAAAAGA+AGG - chr4_4:66497912-66497931 Msa0696540:CDS 30.0%
TTATCATCATATGTCTTCGA+AGG + chr4_4:66498222-66498241 None:intergenic 30.0%
AAAGTAAAGCAGAAATTCAG+AGG - chr4_4:66498310-66498329 Msa0696540:intron 30.0%
AAGTAAAGCAGAAATTCAGA+GGG - chr4_4:66498311-66498330 Msa0696540:intron 30.0%
ACTCTTGAGCTTAAAAAGAA+AGG - chr4_4:66498335-66498354 Msa0696540:CDS 30.0%
!! TAAGCATTGAATTCAATGCT+GGG + chr4_4:66498572-66498591 None:intergenic 30.0%
! CTTAACAGGTTCTTCTTTTA+TGG + chr4_4:66498634-66498653 None:intergenic 30.0%
CATAAAAGAAGAACCTGTTA+AGG - chr4_4:66498632-66498651 Msa0696540:intron 30.0%
!! GGCTGAGGAAATTTTAAAAA+AGG - chr4_4:66498764-66498783 Msa0696540:intron 30.0%
TTTAAAAAAGGCCAAGAATC+TGG - chr4_4:66498776-66498795 Msa0696540:intron 30.0%
CAAGTGAAAATCTCACAAAA+AGG - chr4_4:66498958-66498977 Msa0696540:intron 30.0%
TTCAGTTAATTCATCTCAAG+CGG - chr4_4:66499115-66499134 Msa0696540:intron 30.0%
!! TGTTTTTGTATATCTGGTCT+TGG + chr4_4:66499178-66499197 None:intergenic 30.0%
! AGTCACTTCTTTTCTTCTTT+GGG + chr4_4:66499210-66499229 None:intergenic 30.0%
AAATTTCTTGACGCAAAGAA+AGG + chr4_4:66499298-66499317 None:intergenic 30.0%
! TTCTTTGCGTCAAGAAATTT+TGG - chr4_4:66499298-66499317 Msa0696540:intron 30.0%
!!! AATTTTGGCTCATAAAAGGA+AGG - chr4_4:66499313-66499332 Msa0696540:intron 30.0%
TTGAACAACATTTGATGTGT+TGG + chr4_4:66499465-66499484 None:intergenic 30.0%
TAAAGAAGAAAAACTGAAGG+CGG - chr4_4:66499877-66499896 Msa0696540:intron 30.0%
! CAGCTTCTTTTCATACATTT+TGG + chr4_4:66499957-66499976 None:intergenic 30.0%
CTGAATTCATTGTTAACATC+TGG - chr4_4:66499974-66499993 Msa0696540:intron 30.0%
!! TGTAAATGTGGTTCTAAACA+TGG - chr4_4:66500198-66500217 Msa0696540:five_prime_UTR 30.0%
!!! GGTGTCCTTTATTTTAAATG+AGG - chr4_4:66500248-66500267 Msa0696540:five_prime_UTR 30.0%
TAGTAGAAGAGGATTAACGA+AGG + chr4_4:66494566-66494585 None:intergenic 35.0%
CAATTATTCCCTCGTAAAGA+AGG + chr4_4:66494682-66494701 None:intergenic 35.0%
CTTCTTTACGAGGGAATAAT+TGG - chr4_4:66494680-66494699 Msa0696540:three_prime_UTR 35.0%
ATTGATGAAGGTGAATTGAG+CGG + chr4_4:66494737-66494756 None:intergenic 35.0%
ATTAGCACAATCGAAGAATG+GGG + chr4_4:66494773-66494792 None:intergenic 35.0%
GATTAGCACAATCGAAGAAT+GGG + chr4_4:66494774-66494793 None:intergenic 35.0%
AGATTAGCACAATCGAAGAA+TGG + chr4_4:66494775-66494794 None:intergenic 35.0%
! GTAACAGAGTCTTTGATGAT+TGG + chr4_4:66494819-66494838 None:intergenic 35.0%
GTGAATTGTCTCCTATAGTA+AGG - chr4_4:66495270-66495289 Msa0696540:CDS 35.0%
! GAGAATCAATTTTTCATGCC+CGG - chr4_4:66495326-66495345 Msa0696540:CDS 35.0%
GAAACACAAACAATATAGCC+GGG + chr4_4:66495347-66495366 None:intergenic 35.0%
!! ACCAAGCTTTGAAAAAAGCT+GGG + chr4_4:66495507-66495526 None:intergenic 35.0%
!! AACCAAGCTTTGAAAAAAGC+TGG + chr4_4:66495508-66495527 None:intergenic 35.0%
!!! GCTTTTTTCAAAGCTTGGTT+TGG - chr4_4:66495508-66495527 Msa0696540:CDS 35.0%
AGGTCTTTAGATAAGTGATG+AGG - chr4_4:66495564-66495583 Msa0696540:CDS 35.0%
AGGTCTATAGATAAGTGATG+AGG - chr4_4:66495593-66495612 Msa0696540:CDS 35.0%
CTATCAACAAGTAAGCTCAT+AGG - chr4_4:66495616-66495635 Msa0696540:CDS 35.0%
!! AAGGTTTTTGGATGGTCTAA+AGG - chr4_4:66495678-66495697 Msa0696540:CDS 35.0%
GCTAAACATACAATTAGGGA+CGG + chr4_4:66496019-66496038 None:intergenic 35.0%
GGGAAGCTAAACATACAATT+AGG + chr4_4:66496024-66496043 None:intergenic 35.0%
! ATGTTTAGCTTCCCTTAGAT+TGG - chr4_4:66496030-66496049 Msa0696540:CDS 35.0%
CTATATGGAAAACGAGATCT+TGG - chr4_4:66496165-66496184 Msa0696540:CDS 35.0%
AAGTTGTACCCAACAAAGAA+TGG - chr4_4:66496327-66496346 Msa0696540:CDS 35.0%
GAAATTCTCAACCAGATTCT+TGG - chr4_4:66496620-66496639 Msa0696540:CDS 35.0%
! AACGAGGAACTTCTTTTATC+AGG - chr4_4:66496647-66496666 Msa0696540:CDS 35.0%
AATAGTATGGCTGTTGATGT+GGG - chr4_4:66496800-66496819 Msa0696540:CDS 35.0%
!! CCTTGAAAGCTTTTAAGAGA+GGG - chr4_4:66496912-66496931 Msa0696540:CDS 35.0%
!! ATGCTTTGGAAATTCAGCTA+AGG - chr4_4:66496957-66496976 Msa0696540:CDS 35.0%
AAAGACATTTCTGTTGAGTC+TGG - chr4_4:66497034-66497053 Msa0696540:CDS 35.0%
AAAGTCAGCAAACTTGAGTT+TGG - chr4_4:66497162-66497181 Msa0696540:CDS 35.0%
AAAAGTTTCTGCAATCAAGG+AGG + chr4_4:66497200-66497219 None:intergenic 35.0%
TGCAAAAGTTTCTGCAATCA+AGG + chr4_4:66497203-66497222 None:intergenic 35.0%
GGTTGTTGCTATGAAAAAGA+AGG - chr4_4:66497264-66497283 Msa0696540:CDS 35.0%
AAAAATCCTAGAGAAGCAAC+TGG - chr4_4:66497345-66497364 Msa0696540:CDS 35.0%
GCCATTTCTGATAATCTTGA+TGG - chr4_4:66497505-66497524 Msa0696540:CDS 35.0%
TAATTTAGAAGTGACCGATG+AGG - chr4_4:66497528-66497547 Msa0696540:CDS 35.0%
AGGTAATACTGAAGAAGCAA+TGG - chr4_4:66497702-66497721 Msa0696540:CDS 35.0%
AGCAATGGCGATATTGAAAA+AGG - chr4_4:66497717-66497736 Msa0696540:CDS 35.0%
GAAAGTGACTTAAACAACAC+TGG - chr4_4:66497751-66497770 Msa0696540:CDS 35.0%
TTGCAAAAAGTTACTCCTGT+TGG - chr4_4:66497796-66497815 Msa0696540:CDS 35.0%
TGCAAAAAGTTACTCCTGTT+GGG - chr4_4:66497797-66497816 Msa0696540:CDS 35.0%
! AAATAATAATGCCGCTTCCA+CGG - chr4_4:66497855-66497874 Msa0696540:CDS 35.0%
ATGAAGCAGAAGAAGAAATG+CGG - chr4_4:66497965-66497984 Msa0696540:CDS 35.0%
AGCATATCTTTCACTCCTTA+CGG - chr4_4:66498146-66498165 Msa0696540:CDS 35.0%
GGATTGTTCGAAGATTTAGA+AGG + chr4_4:66498201-66498220 None:intergenic 35.0%
!! CTCAGAAAAGTATCATCAAC+TGG + chr4_4:66498252-66498271 None:intergenic 35.0%
!!! CCAATGTTTTGGCCATTTTA+AGG + chr4_4:66498407-66498426 None:intergenic 35.0%
CCTTAAAATGGCCAAAACAT+TGG - chr4_4:66498404-66498423 Msa0696540:CDS 35.0%
! TATCTTGGCTTCCAATGTTT+TGG + chr4_4:66498418-66498437 None:intergenic 35.0%
!! TGCTCTGAAGAATAATGTAC+AGG - chr4_4:66498449-66498468 Msa0696540:CDS 35.0%
GAAGAATAATGTACAGGTTG+AGG - chr4_4:66498455-66498474 Msa0696540:CDS 35.0%
!! GTAAGCATTGAATTCAATGC+TGG + chr4_4:66498573-66498592 None:intergenic 35.0%
CAATGCTTACTAATCTAGGA+TGG - chr4_4:66498583-66498602 Msa0696540:intron 35.0%
! AGGTTCTTCTTTTATGGTCA+CGG + chr4_4:66498628-66498647 None:intergenic 35.0%
!! AGATTTTGAGAGCCAAAACA+AGG - chr4_4:66498812-66498831 Msa0696540:intron 35.0%
!!! CGGAACAGATTTTTTATCCT+TGG + chr4_4:66498856-66498875 None:intergenic 35.0%
ATGCTCATCATGTGCAAAAT+GGG + chr4_4:66498913-66498932 None:intergenic 35.0%
TCAGTTAATTCATCTCAAGC+GGG - chr4_4:66499116-66499135 Msa0696540:intron 35.0%
! CAGTCACTTCTTTTCTTCTT+TGG + chr4_4:66499211-66499230 None:intergenic 35.0%
!! ACATTTGACTGGTTTGTGTT+TGG + chr4_4:66499248-66499267 None:intergenic 35.0%
! AATCTGGAACAACATTTGAC+TGG + chr4_4:66499259-66499278 None:intergenic 35.0%
!!! TCACAGTCTCTTGTTTTTCT+GGG + chr4_4:66499799-66499818 None:intergenic 35.0%
!!! TTCACAGTCTCTTGTTTTTC+TGG + chr4_4:66499800-66499819 None:intergenic 35.0%
! GCTGAATTTTCTCTTGGTTA+GGG + chr4_4:66499844-66499863 None:intergenic 35.0%
! AGCTGAATTTTCTCTTGGTT+AGG + chr4_4:66499845-66499864 None:intergenic 35.0%
!! CTTCTAGCTGAATTTTCTCT+TGG + chr4_4:66499850-66499869 None:intergenic 35.0%
ACTATCAGCTTGAATAAAGG+AGG + chr4_4:66500041-66500060 None:intergenic 35.0%
! TTGTGCATTTTCATTGAAGG+AGG - chr4_4:66500090-66500109 Msa0696540:CDS 35.0%
! TGTTTCTGCTGTAGTAGAAG+AGG + chr4_4:66494577-66494596 None:intergenic 40.0%
CAGAAGATGTTAGCGAAGAT+CGG - chr4_4:66494643-66494662 Msa0696540:three_prime_UTR 40.0%
AGAAGATGTTAGCGAAGATC+GGG - chr4_4:66494644-66494663 Msa0696540:three_prime_UTR 40.0%
ATTCACCTTCATCAATCGCA+AGG - chr4_4:66494741-66494760 Msa0696540:three_prime_UTR 40.0%
GTTAACCTTGCGATTGATGA+AGG + chr4_4:66494749-66494768 None:intergenic 40.0%
TTAGCACAATCGAAGAATGG+GGG + chr4_4:66494772-66494791 None:intergenic 40.0%
TCTCCTATAGTAAGGAACGA+AGG - chr4_4:66495278-66495297 Msa0696540:CDS 40.0%
CTACCTTCGTTCCTTACTAT+AGG + chr4_4:66495284-66495303 None:intergenic 40.0%
TTCACACCTTAATGCATTGC+AGG - chr4_4:66495364-66495383 Msa0696540:CDS 40.0%
TAGGTTTGATGTATGGAGTC+AGG + chr4_4:66495433-66495452 None:intergenic 40.0%
CACGTGTTAGGTTTGATGTA+TGG + chr4_4:66495440-66495459 None:intergenic 40.0%
!!! ACCCAGCTTTTTTCAAAGCT+TGG - chr4_4:66495503-66495522 Msa0696540:CDS 40.0%
GATAAGTGATGAGGCTATCA+AGG - chr4_4:66495573-66495592 Msa0696540:CDS 40.0%
GGGTCGATATATACTTGAGT+AGG - chr4_4:66495637-66495656 Msa0696540:CDS 40.0%
TCCTGAAAGAGTAAGCCATA+AGG - chr4_4:66495968-66495987 Msa0696540:CDS 40.0%
ACCTTATGGCTTACTCTTTC+AGG + chr4_4:66495972-66495991 None:intergenic 40.0%
AGTAAGCCATAAGGTCATTG+AGG - chr4_4:66495977-66495996 Msa0696540:CDS 40.0%
!! TTTTTCAGCACCACTGTAGA+AGG - chr4_4:66496284-66496303 Msa0696540:CDS 40.0%
ACGCAAAGCCATTCTTTGTT+GGG + chr4_4:66496338-66496357 None:intergenic 40.0%
CAAGGTTCACATATACGTAC+AGG + chr4_4:66496376-66496395 None:intergenic 40.0%
ACCTTGTAAGAAGCTAGAAG+AGG - chr4_4:66496390-66496409 Msa0696540:CDS 40.0%
!! CAAGCACAGGTTGATTATCA+TGG + chr4_4:66496482-66496501 None:intergenic 40.0%
AAGCAATCAACCAGTGACAA+AGG - chr4_4:66496671-66496690 Msa0696540:CDS 40.0%
GCATCTTCTTCAAGTACTAC+AGG - chr4_4:66496722-66496741 Msa0696540:CDS 40.0%
GAATAGTATGGCTGTTGATG+TGG - chr4_4:66496799-66496818 Msa0696540:CDS 40.0%
!! GCCTTGAAAGCTTTTAAGAG+AGG - chr4_4:66496911-66496930 Msa0696540:CDS 40.0%
CCCTCTCTTAAAAGCTTTCA+AGG + chr4_4:66496915-66496934 None:intergenic 40.0%
!! GAAAGCTTTTAAGAGAGGGA+AGG - chr4_4:66496916-66496935 Msa0696540:CDS 40.0%
GGAAATTCAGCTAAGGAAAG+CGG - chr4_4:66496964-66496983 Msa0696540:CDS 40.0%
ATATCCGACATGTTTCCAGA+AGG + chr4_4:66497007-66497026 None:intergenic 40.0%
TCCTCAGACTGGTAAAGATA+AGG - chr4_4:66497075-66497094 Msa0696540:CDS 40.0%
TCCTTATCTTTACCAGTCTG+AGG + chr4_4:66497079-66497098 None:intergenic 40.0%
TACTTCAGAACTTCAAGAGC+TGG - chr4_4:66497105-66497124 Msa0696540:CDS 40.0%
ACTTCAGAACTTCAAGAGCT+GGG - chr4_4:66497106-66497125 Msa0696540:CDS 40.0%
TCAGCAAACTTGAGTTTGGA+GGG - chr4_4:66497166-66497185 Msa0696540:CDS 40.0%
! GCAGAAACTTTTGCAAAGAC+AGG - chr4_4:66497208-66497227 Msa0696540:CDS 40.0%
TGCAAAGACAGGTGAAGAAA+AGG - chr4_4:66497219-66497238 Msa0696540:CDS 40.0%
GCAAAGACAGGTGAAGAAAA+GGG - chr4_4:66497220-66497239 Msa0696540:CDS 40.0%
TAAGCTTGCAGAAGCTAAAG+AGG - chr4_4:66497309-66497328 Msa0696540:CDS 40.0%
GAGCTATCAGCATTAATACG+CGG - chr4_4:66497409-66497428 Msa0696540:CDS 40.0%
TGCTCATGATCATGCAGATT+TGG + chr4_4:66497460-66497479 None:intergenic 40.0%
AATCTGCATGATCATGAGCA+TGG - chr4_4:66497460-66497479 Msa0696540:CDS 40.0%
TAGCAACGCTTCTTTGTCAA+AGG + chr4_4:66497635-66497654 None:intergenic 40.0%
! GAACTCAAACTTTTCCCAAC+AGG + chr4_4:66497814-66497833 None:intergenic 40.0%
!! TGAATCATCAACCGGCTTTT+TGG + chr4_4:66497886-66497905 None:intergenic 40.0%
GCTCTCTTTGAATCATCAAC+CGG + chr4_4:66497894-66497913 None:intergenic 40.0%
AGAAGGTTCTTGCATTGAGA+AGG - chr4_4:66497929-66497948 Msa0696540:CDS 40.0%
GAAGGTTCTTGCATTGAGAA+GGG - chr4_4:66497930-66497949 Msa0696540:CDS 40.0%
TTCTTGCATTGAGAAGGGAA+GGG - chr4_4:66497935-66497954 Msa0696540:CDS 40.0%
ATTGAGAAGGGAAGGGAAAA+TGG - chr4_4:66497942-66497961 Msa0696540:CDS 40.0%
GTAAGGAGTGAAAGATATGC+TGG + chr4_4:66498147-66498166 None:intergenic 40.0%
! TTTAAGACGGGAAGGGAAAA+CGG - chr4_4:66498365-66498384 Msa0696540:CDS 40.0%
TGCAGAGGAAGTCCTTAAAA+TGG - chr4_4:66498392-66498411 Msa0696540:CDS 40.0%
AGCATCCATCTCTTCTATCT+TGG + chr4_4:66498433-66498452 None:intergenic 40.0%
! CTTCAATTCTCCAGTTGATG+TGG - chr4_4:66498497-66498516 Msa0696540:intron 40.0%
!! ATGTGGCAGTTGATGAAGAA+AGG - chr4_4:66498514-66498533 Msa0696540:intron 40.0%
!! TGTGGCAGTTGATGAAGAAA+GGG - chr4_4:66498515-66498534 Msa0696540:intron 40.0%
!! AGTTGATGAAGAAAGGGACA+TGG - chr4_4:66498521-66498540 Msa0696540:intron 40.0%
! GCTTACTAATCTAGGATGGA+AGG - chr4_4:66498587-66498606 Msa0696540:intron 40.0%
! AATCTAGGATGGAAGGATGA+AGG - chr4_4:66498594-66498613 Msa0696540:intron 40.0%
! GGTTCTTCTTTTATGGTCAC+GGG + chr4_4:66498627-66498646 None:intergenic 40.0%
GTACTAGTAGCTTCCTTAAC+AGG + chr4_4:66498648-66498667 None:intergenic 40.0%
CTAGTACTGTCACAACTTCA+AGG - chr4_4:66498661-66498680 Msa0696540:intron 40.0%
GTCACAACTTCAAGGAACAA+AGG - chr4_4:66498669-66498688 Msa0696540:intron 40.0%
! GAGAACTCTTAGCGTTGAAA+AGG - chr4_4:66498703-66498722 Msa0696540:intron 40.0%
! ACTCTTAGCGTTGAAAAGGA+AGG - chr4_4:66498707-66498726 Msa0696540:intron 40.0%
GCTCTCAAAATCTTCCAGTT+GGG + chr4_4:66498805-66498824 None:intergenic 40.0%
!! TCAGCAACAAGTCCTTGTTT+TGG + chr4_4:66498827-66498846 None:intergenic 40.0%
TTTCCGTGAGATGATTCAGA+CGG + chr4_4:66498876-66498895 None:intergenic 40.0%
GATGCTCATCATGTGCAAAA+TGG + chr4_4:66498914-66498933 None:intergenic 40.0%
CATATGCCAGATCTACTTAC+TGG - chr4_4:66499032-66499051 Msa0696540:intron 40.0%
CCATTACCAGTAAGTAGATC+TGG + chr4_4:66499041-66499060 None:intergenic 40.0%
CCAGATCTACTTACTGGTAA+TGG - chr4_4:66499038-66499057 Msa0696540:intron 40.0%
TGTTCCAGATTATGCTTCTC+AGG - chr4_4:66499268-66499287 Msa0696540:intron 40.0%
!! GCAGTTGCTTTGAAAAGAGA+AGG - chr4_4:66499335-66499354 Msa0696540:intron 40.0%
AAGGAAAACTAACAGAAGCC+AGG - chr4_4:66499354-66499373 Msa0696540:intron 40.0%
AGGAAAACTAACAGAAGCCA+GGG - chr4_4:66499355-66499374 Msa0696540:intron 40.0%
AAACGGTCACGACTAGTAAA+CGG + chr4_4:66499521-66499540 None:intergenic 40.0%
ACTCCTGTTGCAACTTGAAA+CGG + chr4_4:66499538-66499557 None:intergenic 40.0%
AAGCAGAAGCTGAGTTAGAA+CGG - chr4_4:66499612-66499631 Msa0696540:intron 40.0%
TCAGAGCAGATAAGAGTTGA+GGG + chr4_4:66499733-66499752 None:intergenic 40.0%
TTCAGAGCAGATAAGAGTTG+AGG + chr4_4:66499734-66499753 None:intergenic 40.0%
!! TTATCTGCTCTGAAAGCTAC+TGG - chr4_4:66499740-66499759 Msa0696540:intron 40.0%
! TTGGTTAGGGTTCTCGATTT+TGG + chr4_4:66499831-66499850 None:intergenic 40.0%
! AAGTCAATGCTGCTACTTCA+AGG - chr4_4:66500007-66500026 Msa0696540:intron 40.0%
ACAAAACGAGTGCACGATTC+CGG + chr4_4:66494508-66494527 None:intergenic 45.0%
CACCAAAGCCTTCTTTACGA+GGG - chr4_4:66494671-66494690 Msa0696540:three_prime_UTR 45.0%
TTCCCTCGTAAAGAAGGCTT+TGG + chr4_4:66494676-66494695 None:intergenic 45.0%
TAGCACAATCGAAGAATGGG+GGG + chr4_4:66494771-66494790 None:intergenic 45.0%
TGATCTGCTAGGTTAAAGGC+GGG + chr4_4:66494960-66494979 None:intergenic 45.0%
CTGATCTGCTAGGTTAAAGG+CGG + chr4_4:66494961-66494980 None:intergenic 45.0%
GCCTTTAACCTAGCAGATCA+GGG - chr4_4:66494960-66494979 Msa0696540:CDS 45.0%
ACCCTGATCTGCTAGGTTAA+AGG + chr4_4:66494964-66494983 None:intergenic 45.0%
TATATGGACCCTGATCTGCT+AGG + chr4_4:66494971-66494990 None:intergenic 45.0%
CACCTTAATGCATTGCAGGT+AGG - chr4_4:66495368-66495387 Msa0696540:CDS 45.0%
CTCCTACCTGCAATGCATTA+AGG + chr4_4:66495373-66495392 None:intergenic 45.0%
TAATGCATTGCAGGTAGGAG+TGG - chr4_4:66495373-66495392 Msa0696540:CDS 45.0%
TTGCAGGTAGGAGTGGAAAT+AGG - chr4_4:66495380-66495399 Msa0696540:CDS 45.0%
ATGGATCAAGCTCACGTGTT+AGG + chr4_4:66495452-66495471 None:intergenic 45.0%
ACCACTCCTCAATGACCTTA+TGG + chr4_4:66495986-66496005 None:intergenic 45.0%
GAAAACGAGATCTTGGGTAC+TGG - chr4_4:66496172-66496191 Msa0696540:CDS 45.0%
CACGCAAAGCCATTCTTTGT+TGG + chr4_4:66496339-66496358 None:intergenic 45.0%
! CAACAAAGAATGGCTTTGCG+TGG - chr4_4:66496337-66496356 Msa0696540:CDS 45.0%
!! GCCTCTTCTAGCTTCTTACA+AGG + chr4_4:66496394-66496413 None:intergenic 45.0%
ACTCTAACACAAGCAAGCAC+AGG + chr4_4:66496495-66496514 None:intergenic 45.0%
!! CCTCGTTTTGACCAAGAATC+TGG + chr4_4:66496634-66496653 None:intergenic 45.0%
CCAGATTCTTGGTCAAAACG+AGG - chr4_4:66496631-66496650 Msa0696540:CDS 45.0%
! GTTACGTCAGCAAGCTTTAG+CGG - chr4_4:66496841-66496860 Msa0696540:CDS 45.0%
CGGAAAAAGTTGTTGCCTTC+TGG - chr4_4:66496989-66497008 Msa0696540:CDS 45.0%
! GTTGCCTTCTGGAAACATGT+CGG - chr4_4:66497000-66497019 Msa0696540:CDS 45.0%
ACAAAGTCACTTCCTCAGAC+TGG - chr4_4:66497064-66497083 Msa0696540:CDS 45.0%
GTCAGCAAACTTGAGTTTGG+AGG - chr4_4:66497165-66497184 Msa0696540:CDS 45.0%
! CAACCTCAGTCTTGTCAATC+CGG + chr4_4:66497249-66497268 None:intergenic 45.0%
GTTCTTCCAGTTGCTTCTCT+AGG + chr4_4:66497354-66497373 None:intergenic 45.0%
AGAGAAGCAACTGGAAGAAC+AGG - chr4_4:66497354-66497373 Msa0696540:CDS 45.0%
ATCAGCATTAATACGCGGCA+TGG - chr4_4:66497414-66497433 Msa0696540:CDS 45.0%
AGTGACCGATGAGGATTTGA+TGG - chr4_4:66497537-66497556 Msa0696540:CDS 45.0%
AGGGTCCATCAAATCCTCAT+CGG + chr4_4:66497545-66497564 None:intergenic 45.0%
GCTCTTAATCAAAAGCGAGC+AGG - chr4_4:66497682-66497701 Msa0696540:CDS 45.0%
GTTCTTGCATTGAGAAGGGA+AGG - chr4_4:66497934-66497953 Msa0696540:CDS 45.0%
AGTTCTTGAGCATCAGCTGA+TGG - chr4_4:66497996-66498015 Msa0696540:CDS 45.0%
TTCGTCGATGACGATTGACT+CGG + chr4_4:66498036-66498055 None:intergenic 45.0%
CAATCGTCATCGACGAATAC+TGG - chr4_4:66498039-66498058 Msa0696540:CDS 45.0%
GAGTAGAAGTCCTCTAGTTG+AGG - chr4_4:66498080-66498099 Msa0696540:CDS 45.0%
AGAAGTCCTCTAGTTGAGGA+AGG - chr4_4:66498084-66498103 Msa0696540:CDS 45.0%
TCTTTCACTCCTTACGGACT+TGG - chr4_4:66498152-66498171 Msa0696540:CDS 45.0%
CTTTCACTCCTTACGGACTT+GGG - chr4_4:66498153-66498172 Msa0696540:CDS 45.0%
!! GAAAGGCCCTTGCTTTAAGA+CGG - chr4_4:66498352-66498371 Msa0696540:CDS 45.0%
!! AAAGGCCCTTGCTTTAAGAC+GGG - chr4_4:66498353-66498372 Msa0696540:CDS 45.0%
GGAAGCCAAGATAGAAGAGA+TGG - chr4_4:66498425-66498444 Msa0696540:CDS 45.0%
TCATCAACTGCCACATCAAC+TGG + chr4_4:66498510-66498529 None:intergenic 45.0%
! GGACATGGTTGTTTCAGAAG+AGG - chr4_4:66498536-66498555 Msa0696540:intron 45.0%
!! AAAGGAAGGCACTTGCTTTG+AGG - chr4_4:66498721-66498740 Msa0696540:intron 45.0%
GGCTCTCAAAATCTTCCAGT+TGG + chr4_4:66498806-66498825 None:intergenic 45.0%
CTTGTTGCTGAATGCATCCA+AGG - chr4_4:66498836-66498855 Msa0696540:intron 45.0%
GTTCCGTCTGAATCATCTCA+CGG - chr4_4:66498870-66498889 Msa0696540:intron 45.0%
TGTGCAAAATGGGAGTTTGC+AGG + chr4_4:66498903-66498922 None:intergenic 45.0%
TGAGCATCCATTATCTGCTG+AGG - chr4_4:66498926-66498945 Msa0696540:intron 45.0%
ATTGCTCATAGCTCCTCAAC+TGG - chr4_4:66498999-66499018 Msa0696540:intron 45.0%
GATCTGGCATATGCATAGAG+TGG + chr4_4:66499025-66499044 None:intergenic 45.0%
GAGGAGTCCAAAGGAATAGT+AGG + chr4_4:66499143-66499162 None:intergenic 45.0%
AGATTCACTGAGGAGTCCAA+AGG + chr4_4:66499152-66499171 None:intergenic 45.0%
! TCGTCCTGAGAAGCATAATC+TGG + chr4_4:66499275-66499294 None:intergenic 45.0%
CAACCTCTTCTCTAACAGCT+TGG + chr4_4:66499396-66499415 None:intergenic 45.0%
CAAGCTGTTAGAGAAGAGGT+TGG - chr4_4:66499394-66499413 Msa0696540:intron 45.0%
TTAGAGAAGAGGTTGGAGGA+TGG - chr4_4:66499401-66499420 Msa0696540:intron 45.0%
!! TGACCGTTTCAAGTTGCAAC+AGG - chr4_4:66499532-66499551 Msa0696540:intron 45.0%
AACGTCAAGCCCTAAAGCTA+CGG - chr4_4:66499570-66499589 Msa0696540:intron 45.0%
AGCAGAAGCTGAGTTAGAAC+GGG - chr4_4:66499613-66499632 Msa0696540:intron 45.0%
AAAGGCAATTGAAGCGCAGT+TGG - chr4_4:66499637-66499656 Msa0696540:intron 45.0%
ATCCACCGCATCTGACTTAT+CGG + chr4_4:66499684-66499703 None:intergenic 45.0%
!! AGGGTTCTCGATTTTGGCAA+CGG + chr4_4:66499825-66499844 None:intergenic 45.0%
!! GCGGTTAGTTTGAAACGATC+AGG - chr4_4:66499896-66499915 Msa0696540:intron 45.0%
AGGAAAACAAGCTGAAGCCT+TGG - chr4_4:66499916-66499935 Msa0696540:intron 45.0%
ATCACTCGTCGTGCAAGAAC+CGG - chr4_4:66494486-66494505 Msa0696540:three_prime_UTR 50.0%
! CCTCGTAAAGAAGGCTTTGG+TGG + chr4_4:66494673-66494692 None:intergenic 50.0%
CCACCAAAGCCTTCTTTACG+AGG - chr4_4:66494670-66494689 Msa0696540:three_prime_UTR 50.0%
GTTGATGCCTCCAATTGCCA+GGG - chr4_4:66494706-66494725 Msa0696540:three_prime_UTR 50.0%
TGAATTGAGCGGAACAACCC+TGG + chr4_4:66494726-66494745 None:intergenic 50.0%
TAAAGGCGGGTAAGGTTGCA+CGG + chr4_4:66494947-66494966 None:intergenic 50.0%
TGCTAGGTTAAAGGCGGGTA+AGG + chr4_4:66494955-66494974 None:intergenic 50.0%
CGCCTTTAACCTAGCAGATC+AGG - chr4_4:66494959-66494978 Msa0696540:CDS 50.0%
GCCATAAGGTCATTGAGGAG+TGG - chr4_4:66495982-66496001 Msa0696540:CDS 50.0%
!! ACGAGATCTTGGGTACTGGA+AGG - chr4_4:66496176-66496195 Msa0696540:CDS 50.0%
!! AGATCTTGGGTACTGGAAGG+TGG - chr4_4:66496179-66496198 Msa0696540:CDS 50.0%
! AGCACCACTGTAGAAGGTGT+GGG - chr4_4:66496290-66496309 Msa0696540:CDS 50.0%
! AGGTGTGGGGGTCTATTTTG+CGG - chr4_4:66496304-66496323 Msa0696540:CDS 50.0%
! AAGAATGGCTTTGCGTGGAC+AGG - chr4_4:66496342-66496361 Msa0696540:CDS 50.0%
! AGAATGGCTTTGCGTGGACA+GGG - chr4_4:66496343-66496362 Msa0696540:CDS 50.0%
!! GGTGCTGATTTCAAGCTTCC+TGG + chr4_4:66496587-66496606 None:intergenic 50.0%
ACCAGTGACAAAGGTCGTAG+TGG - chr4_4:66496680-66496699 Msa0696540:CDS 50.0%
ATGCAGCGCTAACTGATCTC+TGG + chr4_4:66496706-66496725 None:intergenic 50.0%
ACGTAACTCATCAGGAGTGG+TGG + chr4_4:66496828-66496847 None:intergenic 50.0%
CTGACGTAACTCATCAGGAG+TGG + chr4_4:66496831-66496850 None:intergenic 50.0%
! GCTTGCTGACGTAACTCATC+AGG + chr4_4:66496836-66496855 None:intergenic 50.0%
GAAAGGAGACGGGAAATCTG+AGG - chr4_4:66496886-66496905 Msa0696540:CDS 50.0%
TGAGAGGCAAGCAGATGCTT+TGG - chr4_4:66496943-66496962 Msa0696540:CDS 50.0%
TTCAGCTAAGGAAAGCGGCT+CGG - chr4_4:66496969-66496988 Msa0696540:CDS 50.0%
CAGAACTTCAAGAGCTGGGA+TGG - chr4_4:66497110-66497129 Msa0696540:CDS 50.0%
AGAGCTGGGATGGTCTGATT+TGG - chr4_4:66497120-66497139 Msa0696540:CDS 50.0%
GCTCTAACGTTGAAGCGTGA+GGG - chr4_4:66497286-66497305 Msa0696540:CDS 50.0%
GAAGAACAGGAACTCCTTGC+TGG - chr4_4:66497367-66497386 Msa0696540:CDS 50.0%
CAGAATCTTCAGCACCAGCA+AGG + chr4_4:66497384-66497403 None:intergenic 50.0%
! TTGATGGACCCTGAGTTAGC+TGG - chr4_4:66497553-66497572 Msa0696540:CDS 50.0%
! CCAAAGCACCAGCTAACTCA+GGG + chr4_4:66497564-66497583 None:intergenic 50.0%
! TCCAAAGCACCAGCTAACTC+AGG + chr4_4:66497565-66497584 None:intergenic 50.0%
!! AGCTGGTGCTTTGGAATCAC+TGG - chr4_4:66497570-66497589 Msa0696540:CDS 50.0%
!! GCTGGTGCTTTGGAATCACT+GGG - chr4_4:66497571-66497590 Msa0696540:CDS 50.0%
!! GTGCTTTGGAATCACTGGGT+TGG - chr4_4:66497575-66497594 Msa0696540:CDS 50.0%
! TAATAATGCCGCTTCCACGG+TGG - chr4_4:66497858-66497877 Msa0696540:CDS 50.0%
TGAGCATCAGCTGATGGAGA+TGG - chr4_4:66498002-66498021 Msa0696540:CDS 50.0%
CCACTTCCTTCCTCAACTAG+AGG + chr4_4:66498093-66498112 None:intergenic 50.0%
CCTCTAGTTGAGGAAGGAAG+TGG - chr4_4:66498090-66498109 Msa0696540:CDS 50.0%
CATTCCAACCCAAGTCCGTA+AGG + chr4_4:66498164-66498183 None:intergenic 50.0%
CCCTTCCCGTCTTAAAGCAA+GGG + chr4_4:66498361-66498380 None:intergenic 50.0%
!! CCCTTGCTTTAAGACGGGAA+GGG - chr4_4:66498358-66498377 Msa0696540:CDS 50.0%
TCCCTTCCCGTCTTAAAGCA+AGG + chr4_4:66498362-66498381 None:intergenic 50.0%
GCGCAAGGGAGAAATAGAAG+AGG - chr4_4:66498743-66498762 Msa0696540:intron 50.0%
GGGAGAAATAGAAGAGGCTG+AGG - chr4_4:66498749-66498768 Msa0696540:intron 50.0%
CAGTTGGGCTTCCAGATTCT+TGG + chr4_4:66498790-66498809 None:intergenic 50.0%
CAAGAATCTGGAAGCCCAAC+TGG - chr4_4:66498788-66498807 Msa0696540:intron 50.0%
GCACTCACCTCAGCAGATAA+TGG + chr4_4:66498936-66498955 None:intergenic 50.0%
ATGCATAGAGTGGCCAGTTG+AGG + chr4_4:66499015-66499034 None:intergenic 50.0%
AGCGGGTCCTACTATTCCTT+TGG - chr4_4:66499133-66499152 Msa0696540:intron 50.0%
GTCTTGGCTGAGATTCACTG+AGG + chr4_4:66499162-66499181 None:intergenic 50.0%
AGGCCAAGCTGTTAGAGAAG+AGG - chr4_4:66499390-66499409 Msa0696540:intron 50.0%
GCTGTTAGAGAAGAGGTTGG+AGG - chr4_4:66499397-66499416 Msa0696540:intron 50.0%
AACGGCTTTGCAGCAGCATT+CGG + chr4_4:66499503-66499522 None:intergenic 50.0%
! GCCATCTCTCCGTAGCTTTA+GGG + chr4_4:66499582-66499601 None:intergenic 50.0%
CAGCTTCTGCTTCCTCTGTT+CGG + chr4_4:66499604-66499623 None:intergenic 50.0%
AGCTGAGTTAGAACGGGCAA+AGG - chr4_4:66499619-66499638 Msa0696540:intron 50.0%
GGATGCCGATAAGTCAGATG+CGG - chr4_4:66499676-66499695 Msa0696540:intron 50.0%
! GGTGGATGATGTGAGTGTTG+AGG - chr4_4:66499697-66499716 Msa0696540:intron 50.0%
!! GGGTTCTCGATTTTGGCAAC+GGG + chr4_4:66499824-66499843 None:intergenic 50.0%
CGTTGATGCCTCCAATTGCC+AGG - chr4_4:66494705-66494724 Msa0696540:three_prime_UTR 55.0%
GGAACAACCCTGGCAATTGG+AGG + chr4_4:66494716-66494735 None:intergenic 55.0%
AGCGGAACAACCCTGGCAAT+TGG + chr4_4:66494719-66494738 None:intergenic 55.0%
CAGCACCACTGTAGAAGGTG+TGG - chr4_4:66496289-66496308 Msa0696540:CDS 55.0%
! GCACCACTGTAGAAGGTGTG+GGG - chr4_4:66496291-66496310 Msa0696540:CDS 55.0%
! CACCACTGTAGAAGGTGTGG+GGG - chr4_4:66496292-66496311 Msa0696540:CDS 55.0%
!! AGCGCGATTTGAGTTGCGAC+AGG - chr4_4:66496414-66496433 Msa0696540:CDS 55.0%
!! GCGCGATTTGAGTTGCGACA+GGG - chr4_4:66496415-66496434 Msa0696540:CDS 55.0%
GCCACTACGACCTTTGTCAC+TGG + chr4_4:66496684-66496703 None:intergenic 55.0%
AGAGAGGGAAGGAGCTTGAG+AGG - chr4_4:66496927-66496946 Msa0696540:CDS 55.0%
CAGGTGAAGAAAAGGGCAGC+CGG - chr4_4:66497227-66497246 Msa0696540:CDS 55.0%
CAGCCGGATTGACAAGACTG+AGG - chr4_4:66497243-66497262 Msa0696540:CDS 55.0%
! GGCTCTAACGTTGAAGCGTG+AGG - chr4_4:66497285-66497304 Msa0696540:CDS 55.0%
CCCTGAGTTAGCTGGTGCTT+TGG - chr4_4:66497561-66497580 Msa0696540:CDS 55.0%
!!! TTTTGGTGCCACCGTGGAAG+CGG + chr4_4:66497869-66497888 None:intergenic 55.0%
GACTTCTACTCGCTGCATGC+AGG + chr4_4:66498071-66498090 None:intergenic 55.0%
CACTCCTTACGGACTTGGGT+TGG - chr4_4:66498157-66498176 Msa0696540:CDS 55.0%
!! GCCCTTGCTTTAAGACGGGA+AGG - chr4_4:66498357-66498376 Msa0696540:CDS 55.0%
AAGACGGGAAGGGAAAACGG+AGG - chr4_4:66498368-66498387 Msa0696540:CDS 55.0%
AGGGAAAACGGAGGATGCAG+AGG - chr4_4:66498377-66498396 Msa0696540:CDS 55.0%
!! GCACTTGCTTTGAGGCGCAA+GGG - chr4_4:66498729-66498748 Msa0696540:intron 55.0%
TTGCTGGTGGAGGCAGTGTT+TGG + chr4_4:66499437-66499456 None:intergenic 55.0%
ACGGCTTTGCAGCAGCATTC+GGG + chr4_4:66499502-66499521 None:intergenic 55.0%
GCCCTAAAGCTACGGAGAGA+TGG - chr4_4:66499578-66499597 Msa0696540:intron 55.0%
GGCCATCTCTCCGTAGCTTT+AGG + chr4_4:66499583-66499602 None:intergenic 55.0%
GGCAATTGAAGCGCAGTTGG+AGG - chr4_4:66499640-66499659 Msa0696540:intron 55.0%
TGAAGCGCAGTTGGAGGAGT+TGG - chr4_4:66499646-66499665 Msa0696540:intron 55.0%
TGCCGATAAGTCAGATGCGG+TGG - chr4_4:66499679-66499698 Msa0696540:intron 55.0%
GACCCCCACACCTTCTACAG+TGG + chr4_4:66496297-66496316 None:intergenic 60.0%
! TTGAGTTGCGACAGGGACGC+AGG - chr4_4:66496422-66496441 Msa0696540:CDS 60.0%
TGAGTTGCGACAGGGACGCA+GGG - chr4_4:66496423-66496442 Msa0696540:CDS 60.0%
CCACGGTGGCACCAAAAAGC+CGG - chr4_4:66497872-66497891 Msa0696540:CDS 60.0%
!! GGCACTTGCTTTGAGGCGCA+AGG - chr4_4:66498728-66498747 Msa0696540:intron 60.0%
AGCCAGGGACGAACTTCGAC+AGG - chr4_4:66499370-66499389 Msa0696540:intron 60.0%
CGGCTTTGCAGCAGCATTCG+GGG + chr4_4:66499501-66499520 None:intergenic 60.0%
ACGGAGAGATGGCCGAACAG+AGG - chr4_4:66499589-66499608 Msa0696540:intron 60.0%
GTTGGAGGAGTTGGCTGCTC+AGG - chr4_4:66499655-66499674 Msa0696540:intron 60.0%
!! GGCACGTCGAAGAGCATCCA+AGG + chr4_4:66499936-66499955 None:intergenic 60.0%
!!! CCGGCTTTTTGGTGCCACCG+TGG + chr4_4:66497875-66497894 None:intergenic 65.0%
GGCCTGTCGAAGTTCGTCCC+TGG + chr4_4:66499375-66499394 None:intergenic 65.0%
TTGCGACAGGGACGCAGGGC+TGG - chr4_4:66496427-66496446 Msa0696540:CDS 70.0%
TGCGACAGGGACGCAGGGCT+GGG - chr4_4:66496428-66496447 Msa0696540:CDS 70.0%
CAGGGACGCAGGGCTGGGAG+AGG - chr4_4:66496433-66496452 Msa0696540:CDS 75.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 66494460 66500312 66494460 ID=Msa0696540;Name=Msa0696540
chr4_4 mRNA 66494460 66500312 66494460 ID=Msa0696540-mRNA-1;Parent=Msa0696540;Name=Msa0696540-mRNA-1;_AED=0.00;_eAED=0.00;_QI=189|1|1|1|1|1|3|312|1229
chr4_4 exon 66494460 66498184 66494460 ID=Msa0696540-mRNA-1:exon:19351;Parent=Msa0696540-mRNA-1
chr4_4 exon 66498318 66498480 66498318 ID=Msa0696540-mRNA-1:exon:19350;Parent=Msa0696540-mRNA-1
chr4_4 exon 66500010 66500312 66500010 ID=Msa0696540-mRNA-1:exon:19349;Parent=Msa0696540-mRNA-1
chr4_4 five_prime_UTR 66500124 66500312 66500124 ID=Msa0696540-mRNA-1:five_prime_utr;Parent=Msa0696540-mRNA-1
chr4_4 CDS 66500010 66500123 66500010 ID=Msa0696540-mRNA-1:cds;Parent=Msa0696540-mRNA-1
chr4_4 CDS 66498318 66498480 66498318 ID=Msa0696540-mRNA-1:cds;Parent=Msa0696540-mRNA-1
chr4_4 CDS 66494772 66498184 66494772 ID=Msa0696540-mRNA-1:cds;Parent=Msa0696540-mRNA-1
chr4_4 three_prime_UTR 66494460 66494771 66494460 ID=Msa0696540-mRNA-1:three_prime_utr;Parent=Msa0696540-mRNA-1
Gene Sequence

>Msa0696540

ATGTTAGCGAAGATCGGGTTGCCACCAAAGCCTTCTTTACGAGGGAATAATTGGGTCGTTGATGCCTCCAATTGCCAGGGTTGTTCCGCTCAATTCACCTTCATCAATCGCAAGCACCACTGTAGAAGGTGTGGGGGTCTATTTTGCGGAAGTTGTACCCAACAAAGAATGGCTTTGCGTGGACAGGGTGATTCGCCTGTACGTATATGTGAACCTTGTAAGAAGCTAGAAGAGGCAGCGCGATTTGAGTTGCGACAGGGACGCAGGGCTGGGAGAGGAAGCTTGAAATCAGCACCTAGAGATGAAGATGAAATTCTCAACCAGATTCTTGGTCAAAACGAGGAACTTCTTTTATCAGGAAAGCAATCAACCAGTGACAAAGGTCGTAGTGGCCAGAGATCAGTTAGCGCTGCATCTTCTTCAAGTACTACAGGATTTTCTATTCAGGACGAAGAAGATATACAAAAGATTATATCAACTGAAACAACGAATAGTATGGCTGTTGATGTGGGATCCACCACTCCTGATGAGTTACGTCAGCAAGCTTTAGCGGAAAAAAGTAAGTATAAAATTCTGAAAGGAGACGGGAAATCTGAGGAAGCCTTGAAAGCTTTTAAGAGAGGGAAGGAGCTTGAGAGGCAAGCAGATGCTTTGGAAATTCAGCTAAGGAAAGCGGCTCGGAAAAAGTTGTTGCCTTCTGGAAACATGTCGGATATGCACAACAAAGACATTTCTGTTGAGTCTGGCAGAAAAACAAAGTCACTTCCTCAGACTGGTAAAGATAAGGATGATCTTACTTCAGAACTTCAAGAGCTGGGATGGTCTGATTTGGAACTACACAAAGAAGATAGAAAGTCAGCAAACTTGAGTTTGGAGGGTGAACTCTCCTCCTTGATTGCAGAAACTTTTGCAAAGACAGGTGAAGAAAAGGGCAGCCGGATTGACAAGACTGAGGTTGTTGCTATGAAAAAGAAGGCTCTAACGTTGAAGCGTGAGGGTAAGCTTGCAGAAGCTAAAGAGGAATTGAAAAAAGCAAAAATCCTAGAGAAGCAACTGGAAGAACAGGAACTCCTTGCTGGTGCTGAAGATTCTGATGATGAGCTATCAGCATTAATACGCGGCATGGATGATGATGATAAAGAATTTCCAAATCTGCATGATCATGAGCATGGTTTTGATTTTGATAATCTCTTGGCCATTTCTGATAATCTTGATGGTAATTTAGAAGTGACCGATGAGGATTTGATGGACCCTGAGTTAGCTGGTGCTTTGGAATCACTGGGTTGGACTGAACCTGAAAATACATTTTCCAAATCTCAAACCTTTGACAAAGAAGCGTTGCTAAGTGAAATTCAGTCATTGAAAAGAGAGGCTCTTAATCAAAAGCGAGCAGGTAATACTGAAGAAGCAATGGCGATATTGAAAAAGGCGAAGTTATTAGAAAGTGACTTAAACAACACTGGGTCTGATGACGATAATACTATGTTGCAAAAAGTTACTCCTGTTGGGAAAAGTTTGAGTTCTGAAATTACTGGTAATGATAGAAATAATAATGCCGCTTCCACGGTGGCACCAAAAAGCCGGTTGATGATTCAAAGAGAGCTTTTGAATTCGAAAAAGAAGGTTCTTGCATTGAGAAGGGAAGGGAAAATGGATGAAGCAGAAGAAGAAATGCGGAAGAGTGCAGTTCTTGAGCATCAGCTGATGGAGATGGACAATGCTCCGAGTCAATCGTCATCGACGAATACTGGTAATGTCCTGCATGCAGCGAGTAGAAGTCCTCTAGTTGAGGAAGGAAGTGGCGATGATGTAACAGATAAAGATATGTCTGATCCAGCATATCTTTCACTCCTTACGGACTTGGGTTGGAATGATGACAATGATAAACCTTCTAAATCTTCGAACAATCCTTCGAAGACATATGATGATAACTTTGTTCCAGTTGATGATACTTTTCTGAGTAAGCATTCTACAACTATGTTTGTTGAAGCACCAAGAAAAAGTAAAGCAGAAATTCAGAGGGAACTCTTGAGCTTAAAAAGAAAGGCCCTTGCTTTAAGACGGGAAGGGAAAACGGAGGATGCAGAGGAAGTCCTTAAAATGGCCAAAACATTGGAAGCCAAGATAGAAGAGATGGATGCTCTGAAGAATAATGTACAGGTTGAGGCTCTTAAGAAGAAAGAACTCTTCAATTCTCCAGTTGATGTGGCAGTTGATGAAGAAAGGGACATGGTTGTTTCAGAAGAGGATATGCATGACCCAGCATTGAATTCAATGCTTACTAATCTAGGATGGAAGGATGAAGGATTTGAGCCCGTGACCATAAAAGAAGAACCTGTTAAGGAAGCTACTAGTACTGTCACAACTTCAAGGAACAAAGGAGAGATTCAAAGAGAACTCTTAGCGTTGAAAAGGAAGGCACTTGCTTTGAGGCGCAAGGGAGAAATAGAAGAGGCTGAGGAAATTTTAAAAAAGGCCAAGAATCTGGAAGCCCAACTGGAAGATTTTGAGAGCCAAAACAAGGACTTGTTGCTGAATGCATCCAAGGATAAAAAATCTGTTCCGTCTGAATCATCTCACGGAAAAAGTCCTGCAAACTCCCATTTTGCACATGATGAGCATCCATTATCTGCTGAGGTGAGTGCTTCAAGTGAAAATCTCACAAAAAGGATGAAAGTCGAAAATATCATTGCTCATAGCTCCTCAACTGGCCACTCTATGCATATGCCAGATCTACTTACTGGTAATGGCTGTAGCAGTTCTGAAATTTTGTCTCAAAAACAAAAAGAAGAATATAAAGCAGGTTCAGTTAATTCATCTCAAGCGGGTCCTACTATTCCTTTGGACTCCTCAGTGAATCTCAGCCAAGACCAGATATACAAAAACAACATTCAAACCCAAAGAAGAAAAGAAGTGACTGATGTTGATGAAAAGCCAAACACAAACCAGTCAAATGTTGTTCCAGATTATGCTTCTCAGGACGACCTTTCTTTGCGTCAAGAAATTTTGGCTCATAAAAGGAAGGCAGTTGCTTTGAAAAGAGAAGGAAAACTAACAGAAGCCAGGGACGAACTTCGACAGGCCAAGCTGTTAGAGAAGAGGTTGGAGGATGGAAGTATGCAACCAAACACTGCCTCCACCAGCAATGTTTCCAACACATCAAATGTTGTTCAAAAGAAACAAGATTCCCCGAATGCTGCTGCAAAGCCGTTTACTAGTCGTGACCGTTTCAAGTTGCAACAGGAGTCTCTAGCACACAAACGTCAAGCCCTAAAGCTACGGAGAGATGGCCGAACAGAGGAAGCAGAAGCTGAGTTAGAACGGGCAAAGGCAATTGAAGCGCAGTTGGAGGAGTTGGCTGCTCAGGATGCCGATAAGTCAGATGCGGTGGATGATGTGAGTGTTGAGGATTTTCTTGACCCTCAACTCTTATCTGCTCTGAAAGCTACTGGACTTGCAGATTTAACTGTTGTATCTAATAAAAGCCCAGAAAAACAAGAGACTGTGAAACCCGTTGCCAAAATCGAGAACCCTAACCAAGAGAAAATTCAGCTAGAAGAAAGAATTAAAGAAGAAAAACTGAAGGCGGTTAGTTTGAAACGATCAGGAAAACAAGCTGAAGCCTTGGATGCTCTTCGACGTGCCAAAATGTATGAAAAGAAGCTGAATTCATTGTTAACATCTGGGTGA
Protein sequence

>Msa0696540

MLAKIGLPPKPSLRGNNWVVDASNCQGCSAQFTFINRKHHCRRCGGLFCGSCTQQRMALRGQGDSPVRICEPCKKLEEAARFELRQGRRAGRGSLKSAPRDEDEILNQILGQNEELLLSGKQSTSDKGRSGQRSVSAASSSSTTGFSIQDEEDIQKIISTETTNSMAVDVGSTTPDELRQQALAEKSKYKILKGDGKSEEALKAFKRGKELERQADALEIQLRKAARKKLLPSGNMSDMHNKDISVESGRKTKSLPQTGKDKDDLTSELQELGWSDLELHKEDRKSANLSLEGELSSLIAETFAKTGEEKGSRIDKTEVVAMKKKALTLKREGKLAEAKEELKKAKILEKQLEEQELLAGAEDSDDELSALIRGMDDDDKEFPNLHDHEHGFDFDNLLAISDNLDGNLEVTDEDLMDPELAGALESLGWTEPENTFSKSQTFDKEALLSEIQSLKREALNQKRAGNTEEAMAILKKAKLLESDLNNTGSDDDNTMLQKVTPVGKSLSSEITGNDRNNNAASTVAPKSRLMIQRELLNSKKKVLALRREGKMDEAEEEMRKSAVLEHQLMEMDNAPSQSSSTNTGNVLHAASRSPLVEEGSGDDVTDKDMSDPAYLSLLTDLGWNDDNDKPSKSSNNPSKTYDDNFVPVDDTFLSKHSTTMFVEAPRKSKAEIQRELLSLKRKALALRREGKTEDAEEVLKMAKTLEAKIEEMDALKNNVQVEALKKKELFNSPVDVAVDEERDMVVSEEDMHDPALNSMLTNLGWKDEGFEPVTIKEEPVKEATSTVTTSRNKGEIQRELLALKRKALALRRKGEIEEAEEILKKAKNLEAQLEDFESQNKDLLLNASKDKKSVPSESSHGKSPANSHFAHDEHPLSAEVSASSENLTKRMKVENIIAHSSSTGHSMHMPDLLTGNGCSSSEILSQKQKEEYKAGSVNSSQAGPTIPLDSSVNLSQDQIYKNNIQTQRRKEVTDVDEKPNTNQSNVVPDYASQDDLSLRQEILAHKRKAVALKREGKLTEARDELRQAKLLEKRLEDGSMQPNTASTSNVSNTSNVVQKKQDSPNAAAKPFTSRDRFKLQQESLAHKRQALKLRRDGRTEEAEAELERAKAIEAQLEELAAQDADKSDAVDDVSVEDFLDPQLLSALKATGLADLTVVSNKSPEKQETVKPVAKIENPNQEKIQLEERIKEEKLKAVSLKRSGKQAEALDALRRAKMYEKKLNSLLTSG*