Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0538930 | XP_003605489.2 | 98.281 | 349 | 4 | 1 | 1 | 349 | 1 | 347 | 0.0 | 691 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0538930 | sp|F4HT21|IAN9_ARATH | 58.213 | 347 | 133 | 3 | 2 | 348 | 6 | 340 | 5.28e-130 | 378 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0538930 | G7JN49 | 98.281 | 349 | 4 | 1 | 1 | 349 | 1 | 347 | 0.0 | 691 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006070 | Msa0538930 | 0.805193 | 1.502223e-49 | -8.615850e-47 |
| Msa0012040 | Msa0538930 | 0.814538 | 1.464145e-51 | -8.615850e-47 |
| Msa0328810 | Msa0538930 | 0.814908 | 1.212150e-51 | -8.615850e-47 |
| Msa0538930 | Msa0545120 | 0.808844 | 2.536779e-50 | -8.615850e-47 |
| Msa0538930 | Msa0558690 | 0.811268 | 7.620106e-51 | -8.615850e-47 |
| Msa0538930 | Msa0569500 | 0.853468 | 2.342692e-61 | -8.615850e-47 |
| Msa0538930 | Msa0610430 | 0.813470 | 2.518665e-51 | -8.615850e-47 |
| Msa0538930 | Msa0634700 | 0.830239 | 3.285380e-55 | -8.615850e-47 |
| Msa0538930 | Msa0672570 | 0.892512 | 1.482166e-74 | -8.615850e-47 |
| Msa0538930 | Msa0673460 | 0.890320 | 1.095658e-73 | -8.615850e-47 |
| Msa0538930 | Msa0717020 | 0.806227 | 9.112098e-50 | -8.615850e-47 |
| Msa0538930 | Msa0736190 | 0.802057 | 6.720648e-49 | -8.615850e-47 |
| Msa0538930 | Msa0773840 | 0.815185 | 1.052273e-51 | -8.615850e-47 |
| Msa0538930 | Msa0798860 | 0.812010 | 5.256319e-51 | -8.615850e-47 |
| Msa0538930 | Msa0815990 | 0.805962 | 1.036003e-49 | -8.615850e-47 |
| Msa0538930 | Msa1014540 | 0.802543 | 5.337672e-49 | -8.615850e-47 |
| Msa0538930 | Msa1061680 | 0.812383 | 4.357484e-51 | -8.615850e-47 |
| Msa0538930 | Msa1082500 | 0.822610 | 2.160557e-53 | -8.615850e-47 |
| Msa0538930 | Msa1143270 | 0.800531 | 1.379668e-48 | -8.615850e-47 |
| Msa0538930 | Msa1279210 | 0.804173 | 2.452322e-49 | -8.615850e-47 |
| Msa0538930 | Msa1306750 | 0.800625 | 1.319824e-48 | -8.615850e-47 |
| Msa0538930 | Msa1372760 | 0.803029 | 4.237092e-49 | -8.615850e-47 |
| Msa0538930 | Msa1390050 | 0.806266 | 8.940839e-50 | -8.615850e-47 |
| Msa0538930 | Msa1407060 | 0.803286 | 3.748918e-49 | -8.615850e-47 |
| Msa0538930 | Msa1430680 | 0.813333 | 2.699562e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0538930 | MtrunA17_Chr4g0014101 | 98.281 | 349 | 4 | 1 | 1 | 349 | 1 | 347 | 0.0 | 691 |
| Msa0538930 | MtrunA17_Chr4g0014111 | 89.474 | 285 | 28 | 1 | 1 | 283 | 1 | 285 | 0.0 | 512 |
| Msa0538930 | MtrunA17_Chr4g0014141 | 70.286 | 350 | 92 | 3 | 2 | 349 | 1 | 340 | 1.31e-178 | 498 |
| Msa0538930 | MtrunA17_Chr4g0014161 | 71.171 | 333 | 88 | 2 | 9 | 341 | 10 | 334 | 1.75e-169 | 476 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0538930 | AT1G33970.1 | 58.213 | 347 | 133 | 3 | 2 | 348 | 6 | 340 | 5.36e-131 | 378 |
| Msa0538930 | AT1G33970.2 | 58.213 | 347 | 133 | 3 | 2 | 348 | 6 | 340 | 5.36e-131 | 378 |
| Msa0538930 | AT1G33970.4 | 58.213 | 347 | 133 | 3 | 2 | 348 | 6 | 340 | 5.36e-131 | 378 |
| Msa0538930 | AT1G33970.5 | 58.213 | 347 | 133 | 3 | 2 | 348 | 6 | 340 | 5.36e-131 | 378 |
| Msa0538930 | AT1G33970.3 | 59.574 | 282 | 102 | 3 | 2 | 283 | 6 | 275 | 1.89e-108 | 318 |
| Msa0538930 | AT1G33950.1 | 48.951 | 286 | 143 | 2 | 15 | 300 | 2 | 284 | 3.61e-92 | 278 |
| Msa0538930 | AT1G33960.1 | 51.689 | 296 | 135 | 4 | 26 | 316 | 39 | 331 | 3.72e-92 | 280 |
| Msa0538930 | AT1G33960.2 | 51.689 | 296 | 135 | 4 | 26 | 316 | 63 | 355 | 9.30e-92 | 279 |
| Msa0538930 | AT1G33900.1 | 46.284 | 296 | 148 | 4 | 25 | 319 | 14 | 299 | 5.05e-90 | 273 |
| Msa0538930 | AT4G09940.1 | 45.631 | 309 | 160 | 7 | 21 | 326 | 39 | 342 | 1.89e-88 | 271 |
| Msa0538930 | AT1G33930.1 | 45.946 | 296 | 151 | 2 | 9 | 298 | 9 | 301 | 1.20e-87 | 267 |
| Msa0538930 | AT4G09940.2 | 45.631 | 309 | 160 | 7 | 21 | 326 | 82 | 385 | 1.23e-87 | 271 |
| Msa0538930 | AT1G33950.2 | 48.601 | 286 | 138 | 4 | 15 | 300 | 2 | 278 | 2.77e-86 | 263 |
| Msa0538930 | AT4G09950.1 | 45.562 | 338 | 173 | 9 | 17 | 349 | 5 | 336 | 2.22e-85 | 261 |
| Msa0538930 | AT2G26820.2 | 47.518 | 282 | 139 | 4 | 30 | 309 | 6 | 280 | 1.79e-82 | 254 |
| Msa0538930 | AT2G26820.4 | 45.513 | 312 | 160 | 5 | 30 | 338 | 6 | 310 | 5.33e-82 | 254 |
| Msa0538930 | AT2G26820.3 | 45.513 | 312 | 160 | 5 | 30 | 338 | 6 | 310 | 1.07e-80 | 254 |
| Msa0538930 | AT2G26820.1 | 47.518 | 282 | 139 | 4 | 30 | 309 | 6 | 280 | 1.83e-80 | 253 |
| Msa0538930 | AT1G33890.1 | 44.964 | 278 | 149 | 2 | 23 | 299 | 6 | 280 | 2.29e-78 | 243 |
| Msa0538930 | AT1G33890.2 | 44.964 | 278 | 149 | 2 | 23 | 299 | 6 | 280 | 2.29e-78 | 243 |
| Msa0538930 | AT1G33910.1 | 46.403 | 278 | 138 | 5 | 23 | 298 | 6 | 274 | 3.38e-76 | 237 |
| Msa0538930 | AT4G09930.1 | 41.143 | 350 | 189 | 9 | 2 | 349 | 1 | 335 | 2.28e-75 | 236 |
| Msa0538930 | AT1G33830.1 | 50.725 | 207 | 102 | 0 | 31 | 237 | 10 | 216 | 2.92e-70 | 219 |
| Msa0538930 | AT1G33870.1 | 45.020 | 251 | 134 | 3 | 54 | 304 | 1 | 247 | 5.80e-69 | 216 |
| Msa0538930 | AT4G09950.2 | 43.223 | 273 | 144 | 9 | 82 | 349 | 7 | 273 | 3.90e-57 | 187 |
| Msa0538930 | AT1G33880.2 | 41.827 | 208 | 115 | 2 | 29 | 236 | 23 | 224 | 5.28e-57 | 185 |
| Msa0538930 | AT1G33880.1 | 41.827 | 208 | 115 | 2 | 29 | 236 | 23 | 224 | 5.28e-57 | 185 |
Find 83 sgRNAs with CRISPR-Local
Find 291 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGCAGCTTGCAGACATTATT+TGG | 0.116982 | 4_1:+18850610 | Msa0538930:CDS |
| ATCTACATTGTATATATTAA+AGG | 0.207178 | 4_1:-18853567 | None:intergenic |
| TCTGCTGGATCTGAGTTTAT+TGG | 0.235468 | 4_1:+18850481 | Msa0538930:CDS |
| GATACACTTGACGATTATTT+AGG | 0.266607 | 4_1:+18850697 | Msa0538930:CDS |
| CTGCTGGATCTGAGTTTATT+GGG | 0.278196 | 4_1:+18850482 | Msa0538930:CDS |
| GCAAATAACTCATCTGTATA+AGG | 0.299412 | 4_1:-18851410 | None:intergenic |
| TGAAGCTCGGACAGTGGTTT+TGG | 0.303565 | 4_1:+18849512 | Msa0538930:CDS |
| GATTGGGAATTCGCGTCGTC+TGG | 0.337974 | 4_1:+18849459 | Msa0538930:CDS |
| TAATAGTATTCTTGGGAAAA+AGG | 0.341397 | 4_1:+18849569 | Msa0538930:CDS |
| CTCCGCAAGCGAGGTGATAA+GGG | 0.358423 | 4_1:+18853387 | Msa0538930:CDS |
| GCAACCGGTAATAGTATTCT+TGG | 0.374174 | 4_1:+18849561 | Msa0538930:CDS |
| TTTCCCAAGAATACTATTAC+CGG | 0.377468 | 4_1:-18849565 | None:intergenic |
| GCAAAGAAAGGTTGATTCCT+TGG | 0.380823 | 4_1:+18851555 | Msa0538930:CDS |
| GAAGCTATGTTGAAGATGAT+TGG | 0.381049 | 4_1:+18849442 | Msa0538930:CDS |
| TCAGTGATTTGGATTTATGA+TGG | 0.381338 | 4_1:+18849416 | Msa0538930:intron |
| CAGTGATTTGGATTTATGAT+GGG | 0.391340 | 4_1:+18849417 | Msa0538930:intron |
| GTAGATTGAGTCAAAGTTGA+AGG | 0.398135 | 4_1:+18853221 | Msa0538930:intron |
| GTTGGGGTTATCGTGTTGCT+TGG | 0.403004 | 4_1:+18848492 | None:intergenic |
| GGTTGCACTCTTCCCATTGC+CGG | 0.411306 | 4_1:-18849544 | None:intergenic |
| ACTCCGCAAGCGAGGTGATA+AGG | 0.415841 | 4_1:+18853386 | Msa0538930:CDS |
| GGATTATTTGAAGTTTCTGC+TGG | 0.441692 | 4_1:+18850466 | Msa0538930:intron |
| AAGTCGAGGGCAAGCTCGTC+CGG | 0.442258 | 4_1:+18849597 | Msa0538930:CDS |
| AGCAGAAGACAGTGCAAAGT+TGG | 0.445685 | 4_1:+18853299 | Msa0538930:CDS |
| CGCAACAAGATTTCATAATC+CGG | 0.445861 | 4_1:-18853480 | None:intergenic |
| CTATATGATTGTGGTCTTCA+CGG | 0.447172 | 4_1:+18850648 | Msa0538930:CDS |
| TTGGTTGGACGTACCGGCAA+TGG | 0.448150 | 4_1:+18849531 | Msa0538930:CDS |
| TTGGGGTTATCGTGTTGCTT+GGG | 0.454277 | 4_1:+18848493 | None:intergenic |
| GCATATGCAGCAAACATATG+AGG | 0.468304 | 4_1:+18851615 | Msa0538930:CDS |
| TGAGTTATTTGCAGAACTAA+AGG | 0.472581 | 4_1:+18851421 | Msa0538930:CDS |
| AAGCTATGTTGAAGATGATT+GGG | 0.476526 | 4_1:+18849443 | Msa0538930:CDS |
| GGCAATGGGAAGAGTGCAAC+CGG | 0.490727 | 4_1:+18849546 | Msa0538930:CDS |
| CAACCGGTAATAGTATTCTT+GGG | 0.491758 | 4_1:+18849562 | Msa0538930:CDS |
| CTTTGCTTCTCTCACTTCGC+AGG | 0.505478 | 4_1:+18848554 | Msa0538930:five_prime_UTR |
| TACAAGGCTTGAGAAACAAT+TGG | 0.506471 | 4_1:+18853251 | Msa0538930:CDS |
| TCTCTTTGACAACAAGACTA+AGG | 0.507101 | 4_1:+18851310 | Msa0538930:CDS |
| TGCATAGACTTTGCCAAGGA+TGG | 0.507813 | 4_1:+18850520 | Msa0538930:CDS |
| AGAAAGGTTGATTCCTTGGA+AGG | 0.509028 | 4_1:+18851559 | Msa0538930:CDS |
| TATATGATTGTGGTCTTCAC+GGG | 0.509376 | 4_1:+18850649 | Msa0538930:CDS |
| ATTTGCAGAACTAAAGGTAG+AGG | 0.510227 | 4_1:+18851427 | Msa0538930:CDS |
| TGGTTGGACGTACCGGCAAT+GGG | 0.511384 | 4_1:+18849532 | Msa0538930:CDS |
| AAGGACGAAAAGAAGCGATC+TGG | 0.516709 | 4_1:+18851329 | Msa0538930:CDS |
| TCCTTCTGAATATCCTTCCA+AGG | 0.521923 | 4_1:-18851572 | None:intergenic |
| GACAGATAACACCACAAGAA+TGG | 0.522190 | 4_1:-18850551 | None:intergenic |
| TGAATGTCCAGAGTCTTTGA+AGG | 0.532393 | 4_1:+18850723 | Msa0538930:CDS |
| TCAAAGACTCTGGACATTCA+CGG | 0.540421 | 4_1:-18850720 | None:intergenic |
| AATGGCATGGATACCATCCT+TGG | 0.542900 | 4_1:-18850533 | None:intergenic |
| AGTGATTTGGATTTATGATG+GGG | 0.544950 | 4_1:+18849418 | Msa0538930:intron |
| TGATAGTATCACAGAATGGC+GGG | 0.545440 | 4_1:+18851384 | Msa0538930:CDS |
| GATTGTGGTCTTCACGGGAG+GGG | 0.549312 | 4_1:+18850654 | Msa0538930:CDS |
| GTCAATGTCATTGACACTCC+AGG | 0.552195 | 4_1:+18849672 | Msa0538930:CDS |
| TAGCAAATCCTCTCTTTGTG+TGG | 0.559170 | 4_1:+18851275 | Msa0538930:intron |
| AGCAAATCCTCTCTTTGTGT+GGG | 0.561083 | 4_1:+18851276 | Msa0538930:intron |
| AAATAAGTGTGCAGTAGTCA+CGG | 0.567614 | 4_1:-18853515 | None:intergenic |
| TGATTGTGGTCTTCACGGGA+GGG | 0.573707 | 4_1:+18850653 | Msa0538930:CDS |
| AGCTAATGAAGCTCGGACAG+TGG | 0.575504 | 4_1:+18849506 | Msa0538930:CDS |
| GCTAAAACATATTACTGAGA+TGG | 0.577150 | 4_1:+18851642 | Msa0538930:CDS |
| CTTGCTACTAGATCATAGAA+TGG | 0.577281 | 4_1:-18853418 | None:intergenic |
| AGATTTCAGCTAATGAAGCT+CGG | 0.577288 | 4_1:+18849499 | Msa0538930:CDS |
| AGCAGTCTGCATTTCACAAG+AGG | 0.579383 | 4_1:-18849628 | None:intergenic |
| TGATTTGGATTTATGATGGG+GGG | 0.579601 | 4_1:+18849420 | Msa0538930:exon |
| ACGATGAAATACGAAAACTA+AGG | 0.582337 | 4_1:+18853337 | Msa0538930:CDS |
| CATGAAGAACTCCGCAAGCG+AGG | 0.587165 | 4_1:+18853378 | Msa0538930:CDS |
| TCCTTGGAAGGATATTCAGA+AGG | 0.590769 | 4_1:+18851571 | Msa0538930:CDS |
| AACGATTCCCACACAAAGAG+AGG | 0.592811 | 4_1:-18851283 | None:intergenic |
| ATGATTGTGGTCTTCACGGG+AGG | 0.597619 | 4_1:+18850652 | Msa0538930:CDS |
| GATTGTTGACTATATGATTG+TGG | 0.602009 | 4_1:+18850639 | Msa0538930:CDS |
| GTGATTTGGATTTATGATGG+GGG | 0.609123 | 4_1:+18849419 | Msa0538930:intron |
| AGTTGAAGGAGGCAACTACA+AGG | 0.610652 | 4_1:+18853235 | Msa0538930:CDS |
| ACTGCATAGAGAGCAAAGAA+AGG | 0.612802 | 4_1:+18851543 | Msa0538930:CDS |
| AACATGATAGTATCACAGAA+TGG | 0.613239 | 4_1:+18851380 | Msa0538930:CDS |
| TCCGCAAGCGAGGTGATAAG+GGG | 0.625525 | 4_1:+18853388 | Msa0538930:CDS |
| TGGTATCCATGCCATTCTTG+TGG | 0.626101 | 4_1:+18850540 | Msa0538930:CDS |
| ACTAAGGAAGCATCTTGAGA+AGG | 0.630580 | 4_1:+18853353 | Msa0538930:CDS |
| CAGACTGCTGAGTTGAGTGA+TGG | 0.635531 | 4_1:+18849642 | Msa0538930:CDS |
| TTCACAAGAGGAAGTGACAC+CGG | 0.638052 | 4_1:-18849616 | None:intergenic |
| ATAACACCACAAGAATGGCA+TGG | 0.647650 | 4_1:-18850546 | None:intergenic |
| GTCGTCTGGATCAGCTAGCG+AGG | 0.653145 | 4_1:+18849473 | Msa0538930:CDS |
| GATTGAGTCAAAGTTGAAGG+AGG | 0.654673 | 4_1:+18853224 | Msa0538930:intron |
| ATGATAGTATCACAGAATGG+CGG | 0.664615 | 4_1:+18851383 | Msa0538930:CDS |
| CCGCAAGCGAGGTGATAAGG+GGG | 0.671834 | 4_1:+18853389 | Msa0538930:CDS |
| TGTCAGATCACGATTTAGCG+AGG | 0.673590 | 4_1:+18850570 | Msa0538930:CDS |
| CAAGTGCATAGACTTTGCCA+AGG | 0.679540 | 4_1:+18850516 | Msa0538930:CDS |
| CGCAAGCGAGGTGATAAGGG+GGG | 0.685418 | 4_1:+18853390 | Msa0538930:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATTTTCTCAAATTATTAT+CGG | + | chr4_1:18848968-18848987 | Msa0538930:intron | 10.0% |
| !!! | AATTATTAATTTTTCTATAG+AGG | - | chr4_1:18851223-18851242 | None:intergenic | 10.0% |
| !!! | TGACATTTTATTTTATTTTT+TGG | + | chr4_1:18851741-18851760 | Msa0538930:intron | 10.0% |
| !!! | ATTTAGATTTTATCAAAAAT+TGG | + | chr4_1:18852818-18852837 | Msa0538930:intron | 10.0% |
| !!! | AAACAACGTTAAATTTTTTT+AGG | + | chr4_1:18849870-18849889 | Msa0538930:intron | 15.0% |
| !!! | AACAACGTTAAATTTTTTTA+GGG | + | chr4_1:18849871-18849890 | Msa0538930:intron | 15.0% |
| !!! | TTTTAAAAAACTTCTACTTT+TGG | - | chr4_1:18850802-18850821 | None:intergenic | 15.0% |
| !!! | AATTTTTTCCAGATAAAATA+AGG | - | chr4_1:18851061-18851080 | None:intergenic | 15.0% |
| !!! | TATTTTATCTGGAAAAAATT+AGG | + | chr4_1:18851061-18851080 | Msa0538930:intron | 15.0% |
| !!! | TAATTTTGTTGATCTTTAAT+TGG | + | chr4_1:18851238-18851257 | Msa0538930:intron | 15.0% |
| !! | TTTAATAAGGAAAACAATTA+TGG | + | chr4_1:18852150-18852169 | Msa0538930:intron | 15.0% |
| !!! | ATTCAATTTTTACATTATCT+AGG | - | chr4_1:18852449-18852468 | None:intergenic | 15.0% |
| !! | ATCTACATTGTATATATTAA+AGG | - | chr4_1:18853570-18853589 | None:intergenic | 15.0% |
| !! | AATACATAATTGAAGAGTAA+AGG | - | chr4_1:18848655-18848674 | None:intergenic | 20.0% |
| !!! | TCTTGATTCAACAATTTTTT+TGG | + | chr4_1:18848836-18848855 | Msa0538930:intron | 20.0% |
| !! | TGGTTAAGTTTCTTAATTAT+TGG | + | chr4_1:18848856-18848875 | Msa0538930:intron | 20.0% |
| !!! | ACCAAAATTTGTTGAATTAA+AGG | - | chr4_1:18849270-18849289 | None:intergenic | 20.0% |
| !!! | TGGTTAAGTTTGTTATTTAT+TGG | + | chr4_1:18849286-18849305 | Msa0538930:intron | 20.0% |
| !!! | AAAAAATCATCAAGTTGTTA+TGG | - | chr4_1:18849380-18849399 | None:intergenic | 20.0% |
| !!! | TTAATTTCTTTTCAGTGATT+TGG | + | chr4_1:18849405-18849424 | Msa0538930:intron | 20.0% |
| !!! | TTTGAAGGTATTTTTAGTAT+GGG | + | chr4_1:18850738-18850757 | Msa0538930:intron | 20.0% |
| !! | AGAAAAAACATATATCACAA+AGG | - | chr4_1:18850831-18850850 | None:intergenic | 20.0% |
| !!! | TTTGTGATATATGTTTTTTC+TGG | + | chr4_1:18850830-18850849 | Msa0538930:intron | 20.0% |
| !! | TTCATATATTTATTGCAGAA+AGG | + | chr4_1:18851511-18851530 | Msa0538930:intron | 20.0% |
| !! | TCAAAAAATATAGACAGAAA+AGG | - | chr4_1:18851670-18851689 | None:intergenic | 20.0% |
| !! | CTAACTTAATAAGAAAGTTT+AGG | + | chr4_1:18851809-18851828 | Msa0538930:intron | 20.0% |
| !! | CTAAGTTAATAAGAAAGTTT+AGG | + | chr4_1:18851845-18851864 | Msa0538930:intron | 20.0% |
| !! | AGTATCAGAAATTAAGTAAT+GGG | + | chr4_1:18851990-18852009 | Msa0538930:intron | 20.0% |
| !!! | TATATTCTTTTTGCATTTCA+TGG | + | chr4_1:18852017-18852036 | Msa0538930:intron | 20.0% |
| !!! | ATATTCTTTTTGCATTTCAT+GGG | + | chr4_1:18852018-18852037 | Msa0538930:intron | 20.0% |
| !!! | TTGTTTTCCTTATTAAAAGT+TGG | - | chr4_1:18852147-18852166 | None:intergenic | 20.0% |
| !! | ATAAATTATCAAACCAAGTT+TGG | + | chr4_1:18852343-18852362 | Msa0538930:intron | 20.0% |
| !!! | AATTTTTACATTATCTAGGA+AGG | - | chr4_1:18852445-18852464 | None:intergenic | 20.0% |
| !! | AAATATTGAAATGTGCATTA+GGG | + | chr4_1:18852526-18852545 | Msa0538930:intron | 20.0% |
| !!! | TAGATTTTATCAAAAATTGG+AGG | + | chr4_1:18852821-18852840 | Msa0538930:intron | 20.0% |
| !! | TTTGTGTTTGATCAATTATA+TGG | + | chr4_1:18853194-18853213 | Msa0538930:intron | 20.0% |
| ! | AATGAAACAAAATCGCTATA+GGG | - | chr4_1:18848736-18848755 | None:intergenic | 25.0% |
| ! | TAATGAAACAAAATCGCTAT+AGG | - | chr4_1:18848737-18848756 | None:intergenic | 25.0% |
| !!! | ATCAAGATTTTGTTGTTGTT+AGG | - | chr4_1:18849106-18849125 | None:intergenic | 25.0% |
| !! | GCCTTTAATTCAACAAATTT+TGG | + | chr4_1:18849266-18849285 | Msa0538930:intron | 25.0% |
| ! | TAATAGTATTCTTGGGAAAA+AGG | + | chr4_1:18849569-18849588 | Msa0538930:CDS | 25.0% |
| !!! | TTAACGTTGTTTTATTTCCA+GGG | - | chr4_1:18849862-18849881 | None:intergenic | 25.0% |
| !!! | TTTAACGTTGTTTTATTTCC+AGG | - | chr4_1:18849863-18849882 | None:intergenic | 25.0% |
| ! | TTTCATGTTTCTTACAAGAT+TGG | + | chr4_1:18850060-18850079 | Msa0538930:intron | 25.0% |
| !! | CCTTTGAGAATAAAAATCAT+CGG | - | chr4_1:18850116-18850135 | None:intergenic | 25.0% |
| ! | TCAAAGGAACTTTACAAATT+TGG | + | chr4_1:18850235-18850254 | Msa0538930:intron | 25.0% |
| !! | TTTAACCTGAAAAGTTTTAC+AGG | + | chr4_1:18850445-18850464 | Msa0538930:intron | 25.0% |
| !! | ATAATCCTGTAAAACTTTTC+AGG | - | chr4_1:18850453-18850472 | None:intergenic | 25.0% |
| !!! | CTTTGAAGGTATTTTTAGTA+TGG | + | chr4_1:18850737-18850756 | Msa0538930:intron | 25.0% |
| ! | TGTTCTATCTTGTAATCTTA+TGG | + | chr4_1:18850980-18850999 | Msa0538930:intron | 25.0% |
| ! | AATACGAGAGAAAAATTACA+GGG | - | chr4_1:18851026-18851045 | None:intergenic | 25.0% |
| ! | AAATACGAGAGAAAAATTAC+AGG | - | chr4_1:18851027-18851046 | None:intergenic | 25.0% |
| !! | TTTTCCAGATAAAATAAGGA+AGG | - | chr4_1:18851057-18851076 | None:intergenic | 25.0% |
| ! | TGTTTGCATGTTGATATAAT+TGG | + | chr4_1:18851131-18851150 | Msa0538930:intron | 25.0% |
| !! | GCTTGAATATCTAGAATTAT+AGG | + | chr4_1:18851180-18851199 | Msa0538930:intron | 25.0% |
| !! | CAATCTTGTTTCTTAAATCT+TGG | + | chr4_1:18851465-18851484 | Msa0538930:intron | 25.0% |
| ! | CAGTATCAGAAATTAAGTAA+TGG | + | chr4_1:18851989-18852008 | Msa0538930:intron | 25.0% |
| !! | ATGTTTGTTACAAATTCACA+AGG | - | chr4_1:18852059-18852078 | None:intergenic | 25.0% |
| ! | AATAAGGAAAACAATTATGG+AGG | + | chr4_1:18852153-18852172 | Msa0538930:intron | 25.0% |
| ! | ATAAGGAAAACAATTATGGA+GGG | + | chr4_1:18852154-18852173 | Msa0538930:intron | 25.0% |
| ! | TAGCAAAATGAATTCACTTT+GGG | + | chr4_1:18852472-18852491 | Msa0538930:intron | 25.0% |
| ! | GAAATATTGAAATGTGCATT+AGG | + | chr4_1:18852525-18852544 | Msa0538930:intron | 25.0% |
| ! | GTTCAAATATACTCTATTCT+TGG | - | chr4_1:18852692-18852711 | None:intergenic | 25.0% |
| ! | TGAGATGAAAAAAGAACTTA+TGG | + | chr4_1:18852896-18852915 | Msa0538930:intron | 25.0% |
| !! | TATACCAAGCTTTATCAAAA+TGG | + | chr4_1:18852922-18852941 | Msa0538930:intron | 25.0% |
| ! | TATGCTTATACATTCTACTT+TGG | + | chr4_1:18853064-18853083 | Msa0538930:intron | 25.0% |
| ! | TTCTAAGCTTGAACTATATT+TGG | + | chr4_1:18853090-18853109 | Msa0538930:intron | 25.0% |
| !!! | GATTTGCTTAAATTTTCTTC+CGG | + | chr4_1:18853461-18853480 | Msa0538930:three_prime_UTR | 25.0% |
| AAACGATGATGATCAATGAT+TGG | - | chr4_1:18848608-18848627 | None:intergenic | 30.0% | |
| ! | TGAATTTCTCGACTCTTTTT+AGG | + | chr4_1:18848777-18848796 | Msa0538930:intron | 30.0% |
| ! | GAATTTCTCGACTCTTTTTA+GGG | + | chr4_1:18848778-18848797 | Msa0538930:intron | 30.0% |
| TTGAAAGTAATCACATGTGT+CGG | - | chr4_1:18848943-18848962 | None:intergenic | 30.0% | |
| TATGGTGACACTAAACAATA+TGG | - | chr4_1:18849362-18849381 | None:intergenic | 30.0% | |
| ! | TCAGTGATTTGGATTTATGA+TGG | + | chr4_1:18849416-18849435 | Msa0538930:intron | 30.0% |
| ! | CAGTGATTTGGATTTATGAT+GGG | + | chr4_1:18849417-18849436 | Msa0538930:intron | 30.0% |
| ! | AGTGATTTGGATTTATGATG+GGG | + | chr4_1:18849418-18849437 | Msa0538930:intron | 30.0% |
| AAGCTATGTTGAAGATGATT+GGG | + | chr4_1:18849443-18849462 | Msa0538930:CDS | 30.0% | |
| TTTCCCAAGAATACTATTAC+CGG | - | chr4_1:18849568-18849587 | None:intergenic | 30.0% | |
| ! | TAATTTGCCATGTATTTACC+TGG | - | chr4_1:18849693-18849712 | None:intergenic | 30.0% |
| AGGTAAATACATGGCAAATT+AGG | + | chr4_1:18849692-18849711 | Msa0538930:intron | 30.0% | |
| AACACACACAGGTAATAATT+GGG | - | chr4_1:18849776-18849795 | None:intergenic | 30.0% | |
| AAACATGAAAATCATCTCCT+GGG | - | chr4_1:18850050-18850069 | None:intergenic | 30.0% | |
| ! | CCGATGATTTTTATTCTCAA+AGG | + | chr4_1:18850113-18850132 | Msa0538930:intron | 30.0% |
| ! | GATTTTTATTCTCAAAGGAG+AGG | + | chr4_1:18850118-18850137 | Msa0538930:intron | 30.0% |
| ! | GAAAGTAGATTTTGTGAGAT+GGG | + | chr4_1:18850153-18850172 | Msa0538930:intron | 30.0% |
| ATCCCCTAGAATAATATTCT+TGG | + | chr4_1:18850276-18850295 | Msa0538930:intron | 30.0% | |
| TGCCAAGAATATTATTCTAG+GGG | - | chr4_1:18850281-18850300 | None:intergenic | 30.0% | |
| CTGCCAAGAATATTATTCTA+GGG | - | chr4_1:18850282-18850301 | None:intergenic | 30.0% | |
| !!! | TTTTTGGAATGTCATTCACA+AGG | + | chr4_1:18850307-18850326 | Msa0538930:intron | 30.0% |
| ! | GATTGTTGACTATATGATTG+TGG | + | chr4_1:18850639-18850658 | Msa0538930:CDS | 30.0% |
| GATACACTTGACGATTATTT+AGG | + | chr4_1:18850697-18850716 | Msa0538930:CDS | 30.0% | |
| AAAAATACCTTCAAAGACTC+TGG | - | chr4_1:18850733-18850752 | None:intergenic | 30.0% | |
| AAATTCCCATTTGAACCATT+TGG | + | chr4_1:18850877-18850896 | Msa0538930:intron | 30.0% | |
| AATCTCCAAATGGTTCAAAT+GGG | - | chr4_1:18850885-18850904 | None:intergenic | 30.0% | |
| AAATCTCCAAATGGTTCAAA+TGG | - | chr4_1:18850886-18850905 | None:intergenic | 30.0% | |
| !! | CACTGTTTTAAATCTCCAAA+TGG | - | chr4_1:18850895-18850914 | None:intergenic | 30.0% |
| TTAAAACAGTGATATGCAGA+AGG | + | chr4_1:18850904-18850923 | Msa0538930:intron | 30.0% | |
| !!! | AATGCCTTCCTTATTTTATC+TGG | + | chr4_1:18851050-18851069 | Msa0538930:intron | 30.0% |
| AACATGATAGTATCACAGAA+TGG | + | chr4_1:18851380-18851399 | Msa0538930:CDS | 30.0% | |
| GCAAATAACTCATCTGTATA+AGG | - | chr4_1:18851413-18851432 | None:intergenic | 30.0% | |
| TGAGTTATTTGCAGAACTAA+AGG | + | chr4_1:18851421-18851440 | Msa0538930:CDS | 30.0% | |
| GCTAAAACATATTACTGAGA+TGG | + | chr4_1:18851642-18851661 | Msa0538930:CDS | 30.0% | |
| ! | GTACGAACCAACTTTTAATA+AGG | + | chr4_1:18852137-18852156 | Msa0538930:intron | 30.0% |
| ATCTCATTGTTTATTCCTTG+TGG | - | chr4_1:18852186-18852205 | None:intergenic | 30.0% | |
| AACTGCCAATAACTAATCTA+CGG | - | chr4_1:18852209-18852228 | None:intergenic | 30.0% | |
| CATCTTGATCATAAATCTCA+AGG | + | chr4_1:18852371-18852390 | Msa0538930:intron | 30.0% | |
| CTAGCAAAATGAATTCACTT+TGG | + | chr4_1:18852471-18852490 | Msa0538930:intron | 30.0% | |
| CATAACTCATTACAAACTCA+TGG | - | chr4_1:18852596-18852615 | None:intergenic | 30.0% | |
| AGTTATGAAAACTGCAAGAT+GGG | + | chr4_1:18852609-18852628 | Msa0538930:intron | 30.0% | |
| GTAGGAAAAAAAGAAGATTG+AGG | + | chr4_1:18852631-18852650 | Msa0538930:intron | 30.0% | |
| ACAATTTCTACAGAGTAGAA+TGG | + | chr4_1:18852743-18852762 | Msa0538930:intron | 30.0% | |
| CAATTTCTACAGAGTAGAAT+GGG | + | chr4_1:18852744-18852763 | Msa0538930:intron | 30.0% | |
| CAAAATCAAACATTGTACGA+GGG | - | chr4_1:18852872-18852891 | None:intergenic | 30.0% | |
| !! | CTATCCATTTTGATAAAGCT+TGG | - | chr4_1:18852929-18852948 | None:intergenic | 30.0% |
| ! | CAAGCTTTATCAAAATGGAT+AGG | + | chr4_1:18852927-18852946 | Msa0538930:intron | 30.0% |
| GTCATGCGAATATTATTTAG+AGG | - | chr4_1:18853124-18853143 | None:intergenic | 30.0% | |
| ACGATGAAATACGAAAACTA+AGG | + | chr4_1:18853337-18853356 | Msa0538930:CDS | 30.0% | |
| TAAAGGATGATGTAGCTAAG+AGG | - | chr4_1:18848638-18848657 | None:intergenic | 35.0% | |
| TAGTAACTAGCTACGAATCA+AGG | - | chr4_1:18849033-18849052 | None:intergenic | 35.0% | |
| GAATTAAAGGCTCTTAAGCA+CGG | - | chr4_1:18849257-18849276 | None:intergenic | 35.0% | |
| ! | GTGATTTGGATTTATGATGG+GGG | + | chr4_1:18849419-18849438 | Msa0538930:intron | 35.0% |
| ! | TGATTTGGATTTATGATGGG+GGG | + | chr4_1:18849420-18849439 | Msa0538930:exon | 35.0% |
| GAAGCTATGTTGAAGATGAT+TGG | + | chr4_1:18849442-18849461 | Msa0538930:CDS | 35.0% | |
| AGATTTCAGCTAATGAAGCT+CGG | + | chr4_1:18849499-18849518 | Msa0538930:CDS | 35.0% | |
| CAACCGGTAATAGTATTCTT+GGG | + | chr4_1:18849562-18849581 | Msa0538930:CDS | 35.0% | |
| GAAAAAGGTCTTTAAGTCGA+GGG | + | chr4_1:18849584-18849603 | Msa0538930:CDS | 35.0% | |
| ATACATGGCAAATTAGGCTA+TGG | + | chr4_1:18849698-18849717 | Msa0538930:intron | 35.0% | |
| CAACACACACAGGTAATAAT+TGG | - | chr4_1:18849777-18849796 | None:intergenic | 35.0% | |
| CTAACAAAAACAACACACAC+AGG | - | chr4_1:18849787-18849806 | None:intergenic | 35.0% | |
| !! | TGTTTTTGTTAGTGCTTCGT+AGG | + | chr4_1:18849795-18849814 | Msa0538930:intron | 35.0% |
| !! | TTTTAGGGACAGCTTATCAT+AGG | + | chr4_1:18849886-18849905 | Msa0538930:intron | 35.0% |
| TATCCTACAAAACACAGACA+CGG | - | chr4_1:18849934-18849953 | None:intergenic | 35.0% | |
| GAAACATGAAAATCATCTCC+TGG | - | chr4_1:18850051-18850070 | None:intergenic | 35.0% | |
| TTTATTCTCAAAGGAGAGGT+TGG | + | chr4_1:18850122-18850141 | Msa0538930:intron | 35.0% | |
| TTATTCTCAAAGGAGAGGTT+GGG | + | chr4_1:18850123-18850142 | Msa0538930:intron | 35.0% | |
| ! | GGAAAGTAGATTTTGTGAGA+TGG | + | chr4_1:18850152-18850171 | Msa0538930:intron | 35.0% |
| ! | TTTGAACTTTTCCAAAAGCG+GGG | - | chr4_1:18850220-18850239 | None:intergenic | 35.0% |
| ! | CTTTGAACTTTTCCAAAAGC+GGG | - | chr4_1:18850221-18850240 | None:intergenic | 35.0% |
| ! | CCTTTGAACTTTTCCAAAAG+CGG | - | chr4_1:18850222-18850241 | None:intergenic | 35.0% |
| CCTGCCAAGAATATTATTCT+AGG | - | chr4_1:18850283-18850302 | None:intergenic | 35.0% | |
| CCTAGAATAATATTCTTGGC+AGG | + | chr4_1:18850280-18850299 | Msa0538930:intron | 35.0% | |
| !!! | ATTCTTGGCAGGATGTTTTT+TGG | + | chr4_1:18850291-18850310 | Msa0538930:intron | 35.0% |
| CATAACTCAAACAAAGCCAT+AGG | - | chr4_1:18850363-18850382 | None:intergenic | 35.0% | |
| !! | CAAACTTTTCAAGACGTAGA+AGG | - | chr4_1:18850419-18850438 | None:intergenic | 35.0% |
| ! | GGATTATTTGAAGTTTCTGC+TGG | + | chr4_1:18850466-18850485 | Msa0538930:intron | 35.0% |
| CTATATGATTGTGGTCTTCA+CGG | + | chr4_1:18850648-18850667 | Msa0538930:CDS | 35.0% | |
| TATATGATTGTGGTCTTCAC+GGG | + | chr4_1:18850649-18850668 | Msa0538930:CDS | 35.0% | |
| !! | AAATGTTAACTTGTGCCCTT+GGG | + | chr4_1:18850761-18850780 | Msa0538930:intron | 35.0% |
| !! | TGTAGGTTATTAGCCTTTCT+TGG | + | chr4_1:18850948-18850967 | Msa0538930:intron | 35.0% |
| AACAGCAAAACAACCAAGAA+AGG | - | chr4_1:18850964-18850983 | None:intergenic | 35.0% | |
| TCTCTTTGACAACAAGACTA+AGG | + | chr4_1:18851310-18851329 | Msa0538930:CDS | 35.0% | |
| ATGATAGTATCACAGAATGG+CGG | + | chr4_1:18851383-18851402 | Msa0538930:CDS | 35.0% | |
| ATTTGCAGAACTAAAGGTAG+AGG | + | chr4_1:18851427-18851446 | Msa0538930:CDS | 35.0% | |
| TATATACATGCATGACTGCA+TGG | + | chr4_1:18851780-18851799 | Msa0538930:intron | 35.0% | |
| CTGCAATGAATGCAACTATT+TGG | - | chr4_1:18851907-18851926 | None:intergenic | 35.0% | |
| TCATTGCAGTTAGCTATTGT+TGG | + | chr4_1:18851918-18851937 | Msa0538930:intron | 35.0% | |
| !!! | GTTTTGACTCAATGTCACTT+AGG | + | chr4_1:18851942-18851961 | Msa0538930:intron | 35.0% |
| ! | TTTTGCATTTCATGGGTCAT+TGG | + | chr4_1:18852025-18852044 | Msa0538930:intron | 35.0% |
| TTACAAATTCACAAGGCCAT+TGG | - | chr4_1:18852052-18852071 | None:intergenic | 35.0% | |
| AAACAGTACACACCCAAAAA+TGG | - | chr4_1:18852099-18852118 | None:intergenic | 35.0% | |
| ! | GAGATCCGTAGATTAGTTAT+TGG | + | chr4_1:18852201-18852220 | Msa0538930:intron | 35.0% |
| TAGTTATTGGCAGTTCCTAT+AGG | + | chr4_1:18852214-18852233 | Msa0538930:intron | 35.0% | |
| !! | AGAACTTTTGGTAGCTAAGT+AGG | + | chr4_1:18852241-18852260 | Msa0538930:intron | 35.0% |
| !! | GAACTTTTGGTAGCTAAGTA+GGG | + | chr4_1:18852242-18852261 | Msa0538930:intron | 35.0% |
| !! | AACTTTTGGTAGCTAAGTAG+GGG | + | chr4_1:18852243-18852262 | Msa0538930:intron | 35.0% |
| TAAGTAGGGGAAATTGTACT+GGG | + | chr4_1:18852256-18852275 | Msa0538930:intron | 35.0% | |
| !! | GATCTACTTGCATTTTGATC+AGG | - | chr4_1:18852304-18852323 | None:intergenic | 35.0% |
| TGCAAGTAGATCTTGATCAA+TGG | + | chr4_1:18852312-18852331 | Msa0538930:intron | 35.0% | |
| GCAAGTAGATCTTGATCAAT+GGG | + | chr4_1:18852313-18852332 | Msa0538930:intron | 35.0% | |
| TACATTATCTAGGAAGGAGT+TGG | - | chr4_1:18852439-18852458 | None:intergenic | 35.0% | |
| CATTACAAACTCATGGAATC+AGG | - | chr4_1:18852589-18852608 | None:intergenic | 35.0% | |
| GAGTTATGAAAACTGCAAGA+TGG | + | chr4_1:18852608-18852627 | Msa0538930:intron | 35.0% | |
| CCAAAATCAAACATTGTACG+AGG | - | chr4_1:18852873-18852892 | None:intergenic | 35.0% | |
| !! | CCTCGTACAATGTTTGATTT+TGG | + | chr4_1:18852870-18852889 | Msa0538930:intron | 35.0% |
| GGAGATAAAATCAAATTCGC+AGG | + | chr4_1:18852948-18852967 | Msa0538930:intron | 35.0% | |
| GTAGATTGAGTCAAAGTTGA+AGG | + | chr4_1:18853221-18853240 | Msa0538930:intron | 35.0% | |
| TACAAGGCTTGAGAAACAAT+TGG | + | chr4_1:18853251-18853270 | Msa0538930:CDS | 35.0% | |
| CTTGCTACTAGATCATAGAA+TGG | - | chr4_1:18853421-18853440 | None:intergenic | 35.0% | |
| CGCAACAAGATTTCATAATC+CGG | - | chr4_1:18853483-18853502 | None:intergenic | 35.0% | |
| AAATAAGTGTGCAGTAGTCA+CGG | - | chr4_1:18853518-18853537 | None:intergenic | 35.0% | |
| GCAACCGGTAATAGTATTCT+TGG | + | chr4_1:18849561-18849580 | Msa0538930:CDS | 40.0% | |
| GGAAAAAGGTCTTTAAGTCG+AGG | + | chr4_1:18849583-18849602 | Msa0538930:CDS | 40.0% | |
| TGACACTCCAGGTAAATACA+TGG | + | chr4_1:18849683-18849702 | Msa0538930:intron | 40.0% | |
| ACGGACACCAAAAACGAAAT+GGG | - | chr4_1:18849915-18849934 | None:intergenic | 40.0% | |
| ! | GATTAGTCGAGTTTAAACCG+AGG | + | chr4_1:18849975-18849994 | Msa0538930:intron | 40.0% |
| GCTTATGATAAGTTGTGCCT+CGG | - | chr4_1:18849995-18850014 | None:intergenic | 40.0% | |
| !!! | GGGTTTTGAAGGAATGTGAA+TGG | - | chr4_1:18850021-18850040 | None:intergenic | 40.0% |
| AATCATCTCCTGGGTGTAAA+GGG | - | chr4_1:18850041-18850060 | None:intergenic | 40.0% | |
| AAATCATCTCCTGGGTGTAA+AGG | - | chr4_1:18850042-18850061 | None:intergenic | 40.0% | |
| !! | CCGCTTTTGGAAAAGTTCAA+AGG | + | chr4_1:18850219-18850238 | Msa0538930:intron | 40.0% |
| !! | CCATAGGTGTTACTTGTTTC+AGG | - | chr4_1:18850347-18850366 | None:intergenic | 40.0% |
| CCTGAAACAAGTAACACCTA+TGG | + | chr4_1:18850344-18850363 | Msa0538930:intron | 40.0% | |
| TCTGCTGGATCTGAGTTTAT+TGG | + | chr4_1:18850481-18850500 | Msa0538930:CDS | 40.0% | |
| CTGCTGGATCTGAGTTTATT+GGG | + | chr4_1:18850482-18850501 | Msa0538930:CDS | 40.0% | |
| ATAACACCACAAGAATGGCA+TGG | - | chr4_1:18850549-18850568 | None:intergenic | 40.0% | |
| GACAGATAACACCACAAGAA+TGG | - | chr4_1:18850554-18850573 | None:intergenic | 40.0% | |
| TCAAAGACTCTGGACATTCA+CGG | - | chr4_1:18850723-18850742 | None:intergenic | 40.0% | |
| TGAATGTCCAGAGTCTTTGA+AGG | + | chr4_1:18850723-18850742 | Msa0538930:CDS | 40.0% | |
| !! | GAAATGTTAACTTGTGCCCT+TGG | + | chr4_1:18850760-18850779 | Msa0538930:intron | 40.0% |
| !! | AATGTTAACTTGTGCCCTTG+GGG | + | chr4_1:18850762-18850781 | Msa0538930:intron | 40.0% |
| TTCCTTAACTTATGCCCCAA+GGG | - | chr4_1:18850779-18850798 | None:intergenic | 40.0% | |
| GTGAACTCTATGCTCTATGT+AGG | + | chr4_1:18850931-18850950 | Msa0538930:intron | 40.0% | |
| TAGCAAATCCTCTCTTTGTG+TGG | + | chr4_1:18851275-18851294 | Msa0538930:intron | 40.0% | |
| AGCAAATCCTCTCTTTGTGT+GGG | + | chr4_1:18851276-18851295 | Msa0538930:intron | 40.0% | |
| TGATAGTATCACAGAATGGC+GGG | + | chr4_1:18851384-18851403 | Msa0538930:CDS | 40.0% | |
| ACTGCATAGAGAGCAAAGAA+AGG | + | chr4_1:18851543-18851562 | Msa0538930:CDS | 40.0% | |
| ! | GCAAAGAAAGGTTGATTCCT+TGG | + | chr4_1:18851555-18851574 | Msa0538930:CDS | 40.0% |
| ! | AGAAAGGTTGATTCCTTGGA+AGG | + | chr4_1:18851559-18851578 | Msa0538930:CDS | 40.0% |
| TCCTTGGAAGGATATTCAGA+AGG | + | chr4_1:18851571-18851590 | Msa0538930:CDS | 40.0% | |
| TCCTTCTGAATATCCTTCCA+AGG | - | chr4_1:18851575-18851594 | None:intergenic | 40.0% | |
| GCATATGCAGCAAACATATG+AGG | + | chr4_1:18851615-18851634 | Msa0538930:CDS | 40.0% | |
| ! | TAGACACGTGCATCCATTTT+TGG | + | chr4_1:18852083-18852102 | Msa0538930:intron | 40.0% |
| !! | AGACACGTGCATCCATTTTT+GGG | + | chr4_1:18852084-18852103 | Msa0538930:intron | 40.0% |
| ! | CCAAAAGTTCTGACTCCTAT+AGG | - | chr4_1:18852232-18852251 | None:intergenic | 40.0% |
| ! | CCTATAGGAGTCAGAACTTT+TGG | + | chr4_1:18852229-18852248 | Msa0538930:intron | 40.0% |
| CTAAGTAGGGGAAATTGTAC+TGG | + | chr4_1:18852255-18852274 | Msa0538930:intron | 40.0% | |
| TCAAGATGTGATGCCAAACT+TGG | - | chr4_1:18852359-18852378 | None:intergenic | 40.0% | |
| !! | GAATTCACTTTGGGTTGAGA+TGG | + | chr4_1:18852481-18852500 | Msa0538930:intron | 40.0% |
| ATGAAAACTGCAAGATGGGT+AGG | + | chr4_1:18852613-18852632 | Msa0538930:intron | 40.0% | |
| ! | CTGAAGTTCTGACTCTTGTT+GGG | + | chr4_1:18852654-18852673 | Msa0538930:intron | 40.0% |
| CAGGAGAAACTATCAAGAGT+AGG | + | chr4_1:18852967-18852986 | Msa0538930:intron | 40.0% | |
| GATTGAGTCAAAGTTGAAGG+AGG | + | chr4_1:18853224-18853243 | Msa0538930:intron | 40.0% | |
| !! | ACTAAGGAAGCATCTTGAGA+AGG | + | chr4_1:18853353-18853372 | Msa0538930:CDS | 40.0% |
| ACACCGACACTTCTGAACAA+AGG | + | chr4_1:18848912-18848931 | Msa0538930:intron | 45.0% | |
| ! | ACGCCTTTGTTCAGAAGTGT+CGG | - | chr4_1:18848918-18848937 | None:intergenic | 45.0% |
| ! | GCACTGACACTTCTGATCAA+AGG | + | chr4_1:18849133-18849152 | Msa0538930:intron | 45.0% |
| TACATGTGTTGTGTCCGTGT+AGG | - | chr4_1:18849171-18849190 | None:intergenic | 45.0% | |
| ATAGAGACATGGACACGACA+CGG | - | chr4_1:18849234-18849253 | None:intergenic | 45.0% | |
| CTTAAGCACGGATAGAGACA+TGG | - | chr4_1:18849245-18849264 | None:intergenic | 45.0% | |
| TTCACAAGAGGAAGTGACAC+CGG | - | chr4_1:18849619-18849638 | None:intergenic | 45.0% | |
| AGCAGTCTGCATTTCACAAG+AGG | - | chr4_1:18849631-18849650 | None:intergenic | 45.0% | |
| GTCAATGTCATTGACACTCC+AGG | + | chr4_1:18849672-18849691 | Msa0538930:CDS | 45.0% | |
| CATTAGTCGAGTTTGAACCC+TGG | + | chr4_1:18849842-18849861 | Msa0538930:intron | 45.0% | |
| ! | TAGGCACCCCATTTCGTTTT+TGG | + | chr4_1:18849905-18849924 | Msa0538930:intron | 45.0% |
| CGGACACCAAAAACGAAATG+GGG | - | chr4_1:18849914-18849933 | None:intergenic | 45.0% | |
| CACGGACACCAAAAACGAAA+TGG | - | chr4_1:18849916-18849935 | None:intergenic | 45.0% | |
| ! | TGTCCGTGTCTGTGTTTTGT+AGG | + | chr4_1:18849928-18849947 | Msa0538930:intron | 45.0% |
| !! | CTGGGTGTAAAGGGTTTTGA+AGG | - | chr4_1:18850032-18850051 | None:intergenic | 45.0% |
| CTTCAAAACCCTTTACACCC+AGG | + | chr4_1:18850030-18850049 | Msa0538930:intron | 45.0% | |
| ! | TTTAACCTCAACCCCGCTTT+TGG | + | chr4_1:18850206-18850225 | Msa0538930:intron | 45.0% |
| CAAGTGCATAGACTTTGCCA+AGG | + | chr4_1:18850516-18850535 | Msa0538930:CDS | 45.0% | |
| TGCATAGACTTTGCCAAGGA+TGG | + | chr4_1:18850520-18850539 | Msa0538930:CDS | 45.0% | |
| AATGGCATGGATACCATCCT+TGG | - | chr4_1:18850536-18850555 | None:intergenic | 45.0% | |
| TGGTATCCATGCCATTCTTG+TGG | + | chr4_1:18850540-18850559 | Msa0538930:CDS | 45.0% | |
| TGTCAGATCACGATTTAGCG+AGG | + | chr4_1:18850570-18850589 | Msa0538930:CDS | 45.0% | |
| CGCAGCTTGCAGACATTATT+TGG | + | chr4_1:18850610-18850629 | Msa0538930:CDS | 45.0% | |
| GTTCCTTAACTTATGCCCCA+AGG | - | chr4_1:18850780-18850799 | None:intergenic | 45.0% | |
| AACGATTCCCACACAAAGAG+AGG | - | chr4_1:18851286-18851305 | None:intergenic | 45.0% | |
| AAGGACGAAAAGAAGCGATC+TGG | + | chr4_1:18851329-18851348 | Msa0538930:CDS | 45.0% | |
| TTCATGGGTCATTGGTCCAA+TGG | + | chr4_1:18852033-18852052 | Msa0538930:intron | 45.0% | |
| !! | TATGGAGGGTATCTTCCACA+AGG | + | chr4_1:18852168-18852187 | Msa0538930:intron | 45.0% |
| TAGGGGAAATTGTACTGGGA+AGG | + | chr4_1:18852260-18852279 | Msa0538930:intron | 45.0% | |
| ! | AGGAAGGAGTTGGTTGAGTA+AGG | - | chr4_1:18852429-18852448 | None:intergenic | 45.0% |
| TGCATTAGGGATCAGAATGC+AGG | + | chr4_1:18852539-18852558 | Msa0538930:intron | 45.0% | |
| ! | GCTGAAGTTCTGACTCTTGT+TGG | + | chr4_1:18852653-18852672 | Msa0538930:intron | 45.0% |
| ! | AAGTTCTGACTCTTGTTGGG+TGG | + | chr4_1:18852657-18852676 | Msa0538930:intron | 45.0% |
| ! | AGTTCTGACTCTTGTTGGGT+GGG | + | chr4_1:18852658-18852677 | Msa0538930:intron | 45.0% |
| AGTTGAAGGAGGCAACTACA+AGG | + | chr4_1:18853235-18853254 | Msa0538930:CDS | 45.0% | |
| AGCAGAAGACAGTGCAAAGT+TGG | + | chr4_1:18853299-18853318 | Msa0538930:CDS | 45.0% | |
| CTTTGCTTCTCTCACTTCGC+AGG | + | chr4_1:18848554-18848573 | Msa0538930:five_prime_UTR | 50.0% | |
| GTTGTGTCCGTGTAGGACAA+TGG | - | chr4_1:18849164-18849183 | None:intergenic | 50.0% | |
| AGCTAATGAAGCTCGGACAG+TGG | + | chr4_1:18849506-18849525 | Msa0538930:CDS | 50.0% | |
| ! | TGAAGCTCGGACAGTGGTTT+TGG | + | chr4_1:18849512-18849531 | Msa0538930:CDS | 50.0% |
| !!! | GTGGTTTTGGTTGGACGTAC+CGG | + | chr4_1:18849525-18849544 | Msa0538930:CDS | 50.0% |
| ! | CAGACTGCTGAGTTGAGTGA+TGG | + | chr4_1:18849642-18849661 | Msa0538930:CDS | 50.0% |
| AAAGGAGAGGTTGGGCTGTT+GGG | + | chr4_1:18850131-18850150 | Msa0538930:intron | 50.0% | |
| ! | CTTTTCCAAAAGCGGGGTTG+AGG | - | chr4_1:18850214-18850233 | None:intergenic | 50.0% |
| ATGATTGTGGTCTTCACGGG+AGG | + | chr4_1:18850652-18850671 | Msa0538930:CDS | 50.0% | |
| TGATTGTGGTCTTCACGGGA+GGG | + | chr4_1:18850653-18850672 | Msa0538930:CDS | 50.0% | |
| TGCCCTTGGGGCATAAGTTA+AGG | + | chr4_1:18850774-18850793 | Msa0538930:intron | 50.0% | |
| GTTCTGACTCTTGTTGGGTG+GGG | + | chr4_1:18852659-18852678 | Msa0538930:intron | 50.0% | |
| TTCTGACTCTTGTTGGGTGG+GGG | + | chr4_1:18852660-18852679 | Msa0538930:intron | 50.0% | |
| GGCGTGTCCATTGTCCTACA+CGG | + | chr4_1:18849154-18849173 | Msa0538930:intron | 55.0% | |
| GATTGGGAATTCGCGTCGTC+TGG | + | chr4_1:18849459-18849478 | Msa0538930:CDS | 55.0% | |
| !!! | GCTCGGACAGTGGTTTTGGT+TGG | + | chr4_1:18849516-18849535 | Msa0538930:CDS | 55.0% |
| ! | TTGGTTGGACGTACCGGCAA+TGG | + | chr4_1:18849531-18849550 | Msa0538930:CDS | 55.0% |
| ! | TGGTTGGACGTACCGGCAAT+GGG | + | chr4_1:18849532-18849551 | Msa0538930:CDS | 55.0% |
| GGTTGCACTCTTCCCATTGC+CGG | - | chr4_1:18849547-18849566 | None:intergenic | 55.0% | |
| ! | GGCAATGGGAAGAGTGCAAC+CGG | + | chr4_1:18849546-18849565 | Msa0538930:CDS | 55.0% |
| CAAAGGAGAGGTTGGGCTGT+TGG | + | chr4_1:18850130-18850149 | Msa0538930:intron | 55.0% | |
| GATTGTGGTCTTCACGGGAG+GGG | + | chr4_1:18850654-18850673 | Msa0538930:CDS | 55.0% | |
| CATGAAGAACTCCGCAAGCG+AGG | + | chr4_1:18853378-18853397 | Msa0538930:CDS | 55.0% | |
| ACTCCGCAAGCGAGGTGATA+AGG | + | chr4_1:18853386-18853405 | Msa0538930:CDS | 55.0% | |
| CTCCGCAAGCGAGGTGATAA+GGG | + | chr4_1:18853387-18853406 | Msa0538930:CDS | 55.0% | |
| TCCGCAAGCGAGGTGATAAG+GGG | + | chr4_1:18853388-18853407 | Msa0538930:CDS | 55.0% | |
| GTCGTCTGGATCAGCTAGCG+AGG | + | chr4_1:18849473-18849492 | Msa0538930:CDS | 60.0% | |
| AAGTCGAGGGCAAGCTCGTC+CGG | + | chr4_1:18849597-18849616 | Msa0538930:CDS | 60.0% | |
| GACTCTTGTTGGGTGGGGGA+AGG | + | chr4_1:18852664-18852683 | Msa0538930:intron | 60.0% | |
| CCCCCTTATCACCTCGCTTG+CGG | - | chr4_1:18853392-18853411 | None:intergenic | 60.0% | |
| CCGCAAGCGAGGTGATAAGG+GGG | + | chr4_1:18853389-18853408 | Msa0538930:CDS | 60.0% | |
| CGCAAGCGAGGTGATAAGGG+GGG | + | chr4_1:18853390-18853409 | Msa0538930:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 18848506 | 18853599 | 18848506 | ID=Msa0538930;Name=Msa0538930 |
| chr4_1 | mRNA | 18848506 | 18853599 | 18848506 | ID=Msa0538930-mRNA-1;Parent=Msa0538930;Name=Msa0538930-mRNA-1;_AED=0.03;_eAED=0.03;_QI=82|0.8|0.83|1|0.8|0.66|6|171|349 |
| chr4_1 | exon | 18848506 | 18848575 | 18848506 | ID=Msa0538930-mRNA-1:exon:5534;Parent=Msa0538930-mRNA-1 |
| chr4_1 | exon | 18849420 | 18849693 | 18849420 | ID=Msa0538930-mRNA-1:exon:5535;Parent=Msa0538930-mRNA-1 |
| chr4_1 | exon | 18850467 | 18850744 | 18850467 | ID=Msa0538930-mRNA-1:exon:5536;Parent=Msa0538930-mRNA-1 |
| chr4_1 | exon | 18851278 | 18851448 | 18851278 | ID=Msa0538930-mRNA-1:exon:5537;Parent=Msa0538930-mRNA-1 |
| chr4_1 | exon | 18851529 | 18851663 | 18851529 | ID=Msa0538930-mRNA-1:exon:5538;Parent=Msa0538930-mRNA-1 |
| chr4_1 | exon | 18853225 | 18853599 | 18853225 | ID=Msa0538930-mRNA-1:exon:5539;Parent=Msa0538930-mRNA-1 |
| chr4_1 | five_prime_UTR | 18848506 | 18848575 | 18848506 | ID=Msa0538930-mRNA-1:five_prime_utr;Parent=Msa0538930-mRNA-1 |
| chr4_1 | five_prime_UTR | 18849420 | 18849431 | 18849420 | ID=Msa0538930-mRNA-1:five_prime_utr;Parent=Msa0538930-mRNA-1 |
| chr4_1 | CDS | 18849432 | 18849693 | 18849432 | ID=Msa0538930-mRNA-1:cds;Parent=Msa0538930-mRNA-1 |
| chr4_1 | CDS | 18850467 | 18850744 | 18850467 | ID=Msa0538930-mRNA-1:cds;Parent=Msa0538930-mRNA-1 |
| chr4_1 | CDS | 18851278 | 18851448 | 18851278 | ID=Msa0538930-mRNA-1:cds;Parent=Msa0538930-mRNA-1 |
| chr4_1 | CDS | 18851529 | 18851663 | 18851529 | ID=Msa0538930-mRNA-1:cds;Parent=Msa0538930-mRNA-1 |
| chr4_1 | CDS | 18853225 | 18853428 | 18853225 | ID=Msa0538930-mRNA-1:cds;Parent=Msa0538930-mRNA-1 |
| chr4_1 | three_prime_UTR | 18853429 | 18853599 | 18853429 | ID=Msa0538930-mRNA-1:three_prime_utr;Parent=Msa0538930-mRNA-1 |
| Gene Sequence |
| Protein sequence |
