AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1430680


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1430680 MtrunA17_Chr5g0427821 96.364 110 4 0 2 111 3 112 8.60e-78 224
Msa1430680 MtrunA17_Chr7g0214171 90.566 106 10 0 6 111 1 106 7.57e-70 204
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1430680 AT4G24440.2 85.849 106 15 0 6 111 1 106 8.45e-67 196
Msa1430680 AT4G24440.1 85.849 106 15 0 6 111 1 106 8.45e-67 196

Find 34 sgRNAs with CRISPR-Local

Find 233 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGATAATATAACATGGTAAT+TGG 0.189361 tig0026736:-57544 Msa1430680:three_prime_UTR
AAACTGAACGAGAATCTTAA+TGG 0.262548 tig0026736:+60954 None:intergenic
GACAGATACTTTGGATGATA+TGG 0.265182 tig0026736:-61007 Msa1430680:CDS
AAATAAACAAGTTTGTTTAC+TGG 0.314878 tig0026736:+57481 None:intergenic
TATTTATCTCTGGAAAACTA+TGG 0.329338 tig0026736:-57463 Msa1430680:three_prime_UTR
CAAACTTGTTTATTTATCTC+TGG 0.333682 tig0026736:-57473 Msa1430680:three_prime_UTR
GAATGGCCTTAATTTCTTGC+AGG 0.346584 tig0026736:-57641 Msa1430680:three_prime_UTR
TTAGTTCCTGCAAGAAATTA+AGG 0.350443 tig0026736:+57635 None:intergenic
ACTGTTATGATAGATTTAAA+AGG 0.403602 tig0026736:-57605 Msa1430680:three_prime_UTR
ATTAAGGCCATTCATCACTA+TGG 0.430107 tig0026736:+57651 None:intergenic
GATTCTCGTTCAGTTTGATA+AGG 0.442125 tig0026736:-60947 Msa1430680:intron
TAAGAGCAAGGTTTCTATCA+AGG 0.442664 tig0026736:-60628 Msa1430680:intron
GTAGTCTATGACTGAGGCTC+TGG 0.444634 tig0026736:-60661 Msa1430680:intron
AGAATCTTAATGGCATGTTC+AGG 0.445439 tig0026736:+60964 None:intergenic
CAAAGCATCTTGTAAGATGA+AGG 0.487212 tig0026736:+57817 None:intergenic
ACAGTGCTTGACAGATACTT+TGG 0.488404 tig0026736:-61016 Msa1430680:CDS
GGAGTAATGGATTAACTTTG+AGG 0.495617 tig0026736:+57423 None:intergenic
TTGGATGATATGGTTCAGAA+TGG 0.519938 tig0026736:-60997 Msa1430680:CDS
CAAGTTTGTTTACTGGCTCA+TGG 0.525051 tig0026736:+57488 None:intergenic
ATAATCTAATGCCATGGAGA+TGG 0.525477 tig0026736:+57578 None:intergenic
ATCATCTGCTGGTACTGTGA+TGG 0.553988 tig0026736:-57679 Msa1430680:three_prime_UTR
GGAGCATTGCCATCATCTGC+TGG 0.558976 tig0026736:-57690 Msa1430680:three_prime_UTR
GAAGACAAGCAAGAGAATGT+TGG 0.560487 tig0026736:-57785 Msa1430680:CDS
ATCACAGTACCAGCAGATGA+TGG 0.566223 tig0026736:+57681 None:intergenic
TAAAAGGCCTTCCATCTCCA+TGG 0.571662 tig0026736:-57589 Msa1430680:three_prime_UTR
GGCTAGACCATAGTGATGAA+TGG 0.585530 tig0026736:-57658 Msa1430680:three_prime_UTR
ACATTAATAATCTAATGCCA+TGG 0.597098 tig0026736:+57572 None:intergenic
GCATGTGACTCAAAGTTGCT+TGG 0.601308 tig0026736:-57746 Msa1430680:CDS
TGTTGGACGTGTTAAAATTG+TGG 0.603638 tig0026736:-57768 Msa1430680:CDS
GGAGACGAAAGTTAAGAGCA+AGG 0.632666 tig0026736:-60640 Msa1430680:CDS
CTTTATCGTAGGTCGACGAT+CGG 0.638161 tig0026736:-61039 Msa1430680:CDS
TCTAATGCCATGGAGATGGA+AGG 0.638346 tig0026736:+57582 None:intergenic
TTGATTGATCATAATCAATG+AGG 0.646669 tig0026736:-57711 Msa1430680:three_prime_UTR
CGACGTTCGAACTTTATCGT+AGG 0.648273 tig0026736:-61050 Msa1430680:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATATATAAGATAAAGT+TGG + tig0026736:58004-58023 None:intergenic 10.0%
!! TATATATATATATATATGAC+CGG - tig0026736:58013-58032 Msa1430680:intron 10.0%
!! AATAAGATACAAATAAATAA+TGG + tig0026736:58104-58123 None:intergenic 10.0%
!! AGATAAAATTCAATAAATAA+GGG + tig0026736:60486-60505 None:intergenic 10.0%
!! TAGATAAAATTCAATAAATA+AGG + tig0026736:60487-60506 None:intergenic 10.0%
!!! ATAAAATATTATTTTGCATA+TGG - tig0026736:60719-60738 Msa1430680:intron 10.0%
!!! TAAAATATTATTTTGCATAT+GGG - tig0026736:60720-60739 Msa1430680:intron 10.0%
!! AGTAATATTAAATGAATGAT+AGG - tig0026736:58040-58059 Msa1430680:intron 15.0%
!!! AATGTTGTAGTATATATTTT+GGG - tig0026736:58396-58415 Msa1430680:intron 15.0%
!!! TTTATAATGATTTATTGACT+TGG + tig0026736:58750-58769 None:intergenic 15.0%
!! ATGAAATAGATTATTAGAAA+AGG - tig0026736:58989-59008 Msa1430680:intron 15.0%
!! TTAAACTGAAATATTCAATT+TGG - tig0026736:59208-59227 Msa1430680:intron 15.0%
!!! ATTTTGTTTTCATCTTTTTT+TGG - tig0026736:59924-59943 Msa1430680:intron 15.0%
!!! TTTTGTTTTCATCTTTTTTT+GGG - tig0026736:59925-59944 Msa1430680:intron 15.0%
!!! GTTATTTTGATAATATAACA+TGG - tig0026736:61260-61279 Msa1430680:intron 15.0%
!! TGAAAAATTGAAGAAGATTA+AGG + tig0026736:57616-57635 None:intergenic 20.0%
!! TCTATGAAAAATTCTCTTTA+TGG - tig0026736:57941-57960 Msa1430680:intron 20.0%
!! TCAATGAAAATTGATGTATA+TGG + tig0026736:57980-57999 None:intergenic 20.0%
!!! GAATGTTGTAGTATATATTT+TGG - tig0026736:58395-58414 Msa1430680:intron 20.0%
!! ATAAATAACGCATTAATTTC+TGG - tig0026736:58952-58971 Msa1430680:intron 20.0%
!! AATAGATTATTAGAAAAGGA+TGG - tig0026736:58993-59012 Msa1430680:intron 20.0%
!!! TTTGTTTTCATCTTTTTTTG+GGG - tig0026736:59926-59945 Msa1430680:intron 20.0%
!! AAAAAAAAAACCCATTTAAC+CGG + tig0026736:60049-60068 None:intergenic 20.0%
!! AAAAGTAATAAATGATGCAT+TGG + tig0026736:60450-60469 None:intergenic 20.0%
!!! AACATAAAAAAGATGTTTTG+AGG + tig0026736:60793-60812 None:intergenic 20.0%
!! ACTGTTATGATAGATTTAAA+AGG - tig0026736:61206-61225 Msa1430680:intron 20.0%
!! TGATAATATAACATGGTAAT+TGG - tig0026736:61267-61286 Msa1430680:intron 20.0%
!!! AAATAAACAAGTTTGTTTAC+TGG + tig0026736:61333-61352 None:intergenic 20.0%
! GAAGATTAAGGAATTGAAAT+AGG + tig0026736:57604-57623 None:intergenic 25.0%
!! TTTTGGATCTGATCTAATAT+TGG - tig0026736:57913-57932 Msa1430680:intron 25.0%
! TCATTTAATATTACTCACTC+CGG + tig0026736:58035-58054 None:intergenic 25.0%
!!! TTATTGATTTGAATTGCATG+TGG - tig0026736:58122-58141 Msa1430680:intron 25.0%
!! ATCTTTTGTTACATAGTGTA+AGG - tig0026736:58245-58264 Msa1430680:intron 25.0%
!! AAGGTGTTAAAAAAATTGTG+TGG - tig0026736:58264-58283 Msa1430680:intron 25.0%
! AAAAAAATTGTGTGGAATGA+TGG - tig0026736:58272-58291 Msa1430680:intron 25.0%
! TGTTATTAGGATATATGCTT+AGG - tig0026736:58296-58315 Msa1430680:intron 25.0%
! GTTATTAGGATATATGCTTA+GGG - tig0026736:58297-58316 Msa1430680:intron 25.0%
!!! TTGTAGTATATATTTTGGGT+TGG - tig0026736:58400-58419 Msa1430680:intron 25.0%
! GTTTGTGAATATGTAAATAG+AGG + tig0026736:58490-58509 None:intergenic 25.0%
!!! AAAACTTTTCAAGCAATTCA+TGG + tig0026736:58536-58555 None:intergenic 25.0%
!!! TGCTTGAAAAGTTTTGTTAT+TGG - tig0026736:58541-58560 Msa1430680:intron 25.0%
! TGTAGGTTTATGCAATTTAA+TGG - tig0026736:58852-58871 Msa1430680:intron 25.0%
! TTACAAAGTGTAACAGAAAA+TGG - tig0026736:59031-59050 Msa1430680:intron 25.0%
! GTAAATAGAGAACATAAAAG+AGG + tig0026736:59513-59532 None:intergenic 25.0%
!! TTATTTTCATGACTTTTGAG+TGG - tig0026736:59546-59565 Msa1430680:intron 25.0%
! TTTGTTCAAAGTTCAGTTTA+TGG - tig0026736:59578-59597 Msa1430680:intron 25.0%
! CGCTATAAAATTAAGTAACA+AGG + tig0026736:59729-59748 None:intergenic 25.0%
!!! TTGTTTTCATCTTTTTTTGG+GGG - tig0026736:59927-59946 Msa1430680:intron 25.0%
!! TTATGTAGCAATTTTCTTTG+TGG - tig0026736:60017-60036 Msa1430680:intron 25.0%
! TGTATATATGGAACAGAAAA+TGG - tig0026736:60085-60104 Msa1430680:intron 25.0%
! ATGAAGATAAAACTATTCTG+TGG + tig0026736:60136-60155 None:intergenic 25.0%
! ATTATGTAGAAATTCTGCTA+TGG + tig0026736:60288-60307 None:intergenic 25.0%
! ATAGCAGAATTTCTACATAA+TGG - tig0026736:60287-60306 Msa1430680:intron 25.0%
!! AATAAATAAGGGTATGTTAG+TGG + tig0026736:60475-60494 None:intergenic 25.0%
! TCCACTAACTACAATTAATA+AGG - tig0026736:60517-60536 Msa1430680:intron 25.0%
! CCACTAACTACAATTAATAA+GGG - tig0026736:60518-60537 Msa1430680:intron 25.0%
!! CACTGTTTTCATTATATTGT+GGG - tig0026736:60641-60660 Msa1430680:CDS 25.0%
! GAAAATAAGAAGAAAAGTCA+GGG + tig0026736:60919-60938 None:intergenic 25.0%
! TGAAAATAAGAAGAAAAGTC+AGG + tig0026736:60920-60939 None:intergenic 25.0%
!!! TATTTTCACTTTTGAACCAT+AGG - tig0026736:60932-60951 Msa1430680:intron 25.0%
!!! ATTTTCACTTTTGAACCATA+GGG - tig0026736:60933-60952 Msa1430680:intron 25.0%
! TTGATTGATCATAATCAATG+AGG - tig0026736:61100-61119 Msa1430680:intron 25.0%
! ACATTAATAATCTAATGCCA+TGG + tig0026736:61242-61261 None:intergenic 25.0%
!! CAAACTTGTTTATTTATCTC+TGG - tig0026736:61338-61357 Msa1430680:intron 25.0%
!! TATTTATCTCTGGAAAACTA+TGG - tig0026736:61348-61367 Msa1430680:intron 25.0%
!! TCCAAATTCTAGGGTATATA+AGG - tig0026736:57476-57495 Msa1430680:three_prime_UTR 30.0%
CGAATTTGAGAGGAAAAAAT+TGG + tig0026736:57575-57594 None:intergenic 30.0%
TAGGTAATTACGAATTTGAG+AGG + tig0026736:57585-57604 None:intergenic 30.0%
! AATGTAGATCGCATTTTTCA+TGG - tig0026736:57738-57757 Msa1430680:exon 30.0%
AAACTGAACGAGAATCTTAA+TGG + tig0026736:57860-57879 None:intergenic 30.0%
ATAAATAATGGCAAACACTC+TGG + tig0026736:58092-58111 None:intergenic 30.0%
! TTGTTGGTTGTAGTTAAGAT+TGG - tig0026736:58332-58351 Msa1430680:intron 30.0%
!! TGTTATGAGCTCTAGATATT+TGG - tig0026736:58363-58382 Msa1430680:intron 30.0%
ACTAGAAATCTGTAAAGACA+GGG + tig0026736:58618-58637 None:intergenic 30.0%
TACTAGAAATCTGTAAAGAC+AGG + tig0026736:58619-58638 None:intergenic 30.0%
TTATGGTTTATCAATCAGCT+TGG + tig0026736:58718-58737 None:intergenic 30.0%
AGTGTAACAGAAAATGGATA+TGG - tig0026736:59037-59056 Msa1430680:intron 30.0%
!! TGGATATGGTTTGATTTTGA+CGG - tig0026736:59051-59070 Msa1430680:intron 30.0%
AATTTGCAGTTTGAGAGATA+AGG - tig0026736:59310-59329 Msa1430680:intron 30.0%
ATTTGCAGTTTGAGAGATAA+GGG - tig0026736:59311-59330 Msa1430680:intron 30.0%
ACTTTCATAGACATTGTACT+TGG + tig0026736:59356-59375 None:intergenic 30.0%
AAGTACAATGTCTATGAAAG+TGG - tig0026736:59355-59374 Msa1430680:intron 30.0%
AGTACAATGTCTATGAAAGT+GGG - tig0026736:59356-59375 Msa1430680:intron 30.0%
TTTCAACAAAAAGTTACACG+AGG + tig0026736:59446-59465 None:intergenic 30.0%
TATAACACACGACATTCAAA+TGG - tig0026736:59671-59690 Msa1430680:intron 30.0%
! ATTAAGTAACAAGGTACTTG+TGG + tig0026736:59720-59739 None:intergenic 30.0%
TCGTAACGACTAAAACTTAT+GGG + tig0026736:59822-59841 None:intergenic 30.0%
ATCGTAACGACTAAAACTTA+TGG + tig0026736:59823-59842 None:intergenic 30.0%
AATCAAATAAGTGACGTCAA+TGG + tig0026736:59851-59870 None:intergenic 30.0%
TTGACGTCACTTATTTGATT+AGG - tig0026736:59851-59870 Msa1430680:intron 30.0%
! ATTTTCTTTGTGGAAATGTC+CGG - tig0026736:60027-60046 Msa1430680:intron 30.0%
CCATATATACATTCATCATG+AGG + tig0026736:60076-60095 None:intergenic 30.0%
CCTCATGATGAATGTATATA+TGG - tig0026736:60073-60092 Msa1430680:intron 30.0%
! TACCTCTAAAGATTACAGAA+AGG - tig0026736:60183-60202 Msa1430680:intron 30.0%
AACCTTTCTGTAATCTTTAG+AGG + tig0026736:60188-60207 None:intergenic 30.0%
TTATATAGATTCTGAGTGTG+AGG - tig0026736:60261-60280 Msa1430680:intron 30.0%
ATTCAATGATTATGCAGTAC+AGG + tig0026736:60351-60370 None:intergenic 30.0%
AAGTGACAATTATTGTGAGA+TGG + tig0026736:60384-60403 None:intergenic 30.0%
!! CTAAAGTGACTATTGTTTTG+AGG + tig0026736:60423-60442 None:intergenic 30.0%
CCCTTATTAATTGTAGTTAG+TGG + tig0026736:60521-60540 None:intergenic 30.0%
TTACCATTGAAATCAACACA+CGG - tig0026736:60564-60583 Msa1430680:intron 30.0%
AACACTCCACTCATAATATA+GGG + tig0026736:60609-60628 None:intergenic 30.0%
TAACACTCCACTCATAATAT+AGG + tig0026736:60610-60629 None:intergenic 30.0%
CCACAATATAATGAAAACAG+TGG + tig0026736:60643-60662 None:intergenic 30.0%
! CCACTGTTTTCATTATATTG+TGG - tig0026736:60640-60659 Msa1430680:CDS 30.0%
!!! AAAAAGATGTTTTGAGGTGT+TGG + tig0026736:60787-60806 None:intergenic 30.0%
AAAAGTCAGGGAAAGAAAAT+GGG + tig0026736:60907-60926 None:intergenic 30.0%
TTAGTTCCTGCAAGAAATTA+AGG + tig0026736:61179-61198 None:intergenic 30.0%
GCCTTATATACCCTAGAATT+TGG + tig0026736:57480-57499 None:intergenic 35.0%
! TTTTGCGAGCGAAGAAAATT+GGG + tig0026736:57503-57522 None:intergenic 35.0%
! ATTTTGCGAGCGAAGAAAAT+TGG + tig0026736:57504-57523 None:intergenic 35.0%
GACAGATACTTTGGATGATA+TGG - tig0026736:57804-57823 Msa1430680:CDS 35.0%
TTGGATGATATGGTTCAGAA+TGG - tig0026736:57814-57833 Msa1430680:CDS 35.0%
AGAATCTTAATGGCATGTTC+AGG + tig0026736:57850-57869 None:intergenic 35.0%
GATTCTCGTTCAGTTTGATA+AGG - tig0026736:57864-57883 Msa1430680:intron 35.0%
!!! GACACTAGGATTTTGGTTTT+TGG - tig0026736:57896-57915 Msa1430680:intron 35.0%
TGCATACCTAACAAAACACT+AGG - tig0026736:58063-58082 Msa1430680:intron 35.0%
! GATTTTGTAGTCTATGACTG+AGG - tig0026736:58144-58163 Msa1430680:intron 35.0%
TAAGAGCAAGGTTTCTATCA+AGG - tig0026736:58183-58202 Msa1430680:intron 35.0%
! GTGGAATGATGGTTGTTATT+AGG - tig0026736:58283-58302 Msa1430680:intron 35.0%
! AGGGTTGTTTGATGTTTTGT+TGG - tig0026736:58316-58335 Msa1430680:intron 35.0%
AGAAAGTGATGTTTACGACA+CGG + tig0026736:58567-58586 None:intergenic 35.0%
CACAGCGAAAATTTCTTTAC+AGG + tig0026736:58663-58682 None:intergenic 35.0%
!! TGACTTGGTTTGTGTGTTTA+TGG + tig0026736:58735-58754 None:intergenic 35.0%
ATTGCATAAACCTACAACCA+GGG + tig0026736:58848-58867 None:intergenic 35.0%
AATTGCATAAACCTACAACC+AGG + tig0026736:58849-58868 None:intergenic 35.0%
! ACGGTGATATATGTTTTCTC+AGG - tig0026736:59070-59089 Msa1430680:intron 35.0%
AAAATATAATGAACCCAGCG+TGG - tig0026736:59244-59263 Msa1430680:intron 35.0%
AAATATAATGAACCCAGCGT+GGG - tig0026736:59245-59264 Msa1430680:intron 35.0%
AAATTTATGGGTGAGGTTGA+GGG - tig0026736:59269-59288 Msa1430680:intron 35.0%
GTTTGAGAGATAAGGGAAAA+AGG - tig0026736:59318-59337 Msa1430680:intron 35.0%
! AACATAAAAGAGGCGTGTTA+CGG + tig0026736:59503-59522 None:intergenic 35.0%
CTAAACACTTGAGGTTCATT+TGG - tig0026736:59751-59770 Msa1430680:intron 35.0%
! AAGAGTGAGAAAGAGTATAG+TGG + tig0026736:59903-59922 None:intergenic 35.0%
! GTAATCTTTAGAGGTATGAC+AGG + tig0026736:60179-60198 None:intergenic 35.0%
!! TAGCTGAGCTTTGAATTTCT+AGG - tig0026736:60227-60246 Msa1430680:intron 35.0%
ATGGAGTTAACCTGAATCTT+TGG - tig0026736:60306-60325 Msa1430680:intron 35.0%
TGGAGTTAACCTGAATCTTT+GGG - tig0026736:60307-60326 Msa1430680:intron 35.0%
GACAATTATTGTGAGATGGA+GGG + tig0026736:60380-60399 None:intergenic 35.0%
TGACAATTATTGTGAGATGG+AGG + tig0026736:60381-60400 None:intergenic 35.0%
ATCGTTCCCTATATTATGAG+TGG - tig0026736:60600-60619 Msa1430680:intron 35.0%
! ATGAGTGGAGTGTTATGATT+TGG - tig0026736:60615-60634 Msa1430680:intron 35.0%
AACACATTGGCAACATGAAA+TGG + tig0026736:60748-60767 None:intergenic 35.0%
TTTCATGTTGCCAATGTGTT+TGG - tig0026736:60748-60767 Msa1430680:intron 35.0%
GAAAAGTCAGGGAAAGAAAA+TGG + tig0026736:60908-60927 None:intergenic 35.0%
TATGTATGAAGATGTCCCTA+TGG + tig0026736:60951-60970 None:intergenic 35.0%
! ACAGATTTTGTGACAATGTC+TGG - tig0026736:60970-60989 Msa1430680:CDS 35.0%
! CAAAGCATCTTGTAAGATGA+AGG + tig0026736:60997-61016 None:intergenic 35.0%
TGTTGGACGTGTTAAAATTG+TGG - tig0026736:61043-61062 Msa1430680:CDS 35.0%
ATTAAGGCCATTCATCACTA+TGG + tig0026736:61163-61182 None:intergenic 35.0%
ATAATCTAATGCCATGGAGA+TGG + tig0026736:61236-61255 None:intergenic 35.0%
GGGTATATATAGAGGAAGCT+TGG + tig0026736:57451-57470 None:intergenic 40.0%
! GGAGTTGAGGGTATATATAG+AGG + tig0026736:57459-57478 None:intergenic 40.0%
TACCCTCAACTCCAAATTCT+AGG - tig0026736:57466-57485 Msa1430680:three_prime_UTR 40.0%
ACCCTCAACTCCAAATTCTA+GGG - tig0026736:57467-57486 Msa1430680:three_prime_UTR 40.0%
! ACCCTAGAATTTGGAGTTGA+GGG + tig0026736:57471-57490 None:intergenic 40.0%
! TACCCTAGAATTTGGAGTTG+AGG + tig0026736:57472-57491 None:intergenic 40.0%
TTTGCGAGCGAAGAAAATTG+GGG + tig0026736:57502-57521 None:intergenic 40.0%
! TGTTGTTGTTCTGCGAGTTA+AGG + tig0026736:57544-57563 None:intergenic 40.0%
ACAGTGCTTGACAGATACTT+TGG - tig0026736:57795-57814 Msa1430680:CDS 40.0%
CTCGTTCAGTTTGATAAGGT+TGG - tig0026736:57868-57887 Msa1430680:intron 40.0%
!! TAAGGTTGGTTTCAGACACT+AGG - tig0026736:57882-57901 Msa1430680:intron 40.0%
! GGTTTCAGACACTAGGATTT+TGG - tig0026736:57889-57908 Msa1430680:intron 40.0%
!! TGGTCACCTAGTGTTTTGTT+AGG + tig0026736:58072-58091 None:intergenic 40.0%
!! CTTTTCAAGCAATTCATGGC+CGG + tig0026736:58532-58551 None:intergenic 40.0%
! AAAGGATGGTAGTGAAACTG+TGG - tig0026736:59007-59026 Msa1430680:intron 40.0%
AATATAATGAACCCAGCGTG+GGG - tig0026736:59246-59265 Msa1430680:intron 40.0%
GAAATTTATGGGTGAGGTTG+AGG - tig0026736:59268-59287 Msa1430680:intron 40.0%
TGGACACTCTTCCAATTACA+GGG + tig0026736:59390-59409 None:intergenic 40.0%
TTGGACACTCTTCCAATTAC+AGG + tig0026736:59391-59410 None:intergenic 40.0%
! ACATAAAAGAGGCGTGTTAC+GGG + tig0026736:59502-59521 None:intergenic 40.0%
! AGTAACAAGGTACTTGTGGA+TGG + tig0026736:59716-59735 None:intergenic 40.0%
! TATAGCGCTCTAAACACTTG+AGG - tig0026736:59742-59761 Msa1430680:intron 40.0%
GGATAAGTAGAGACTAACTG+TGG - tig0026736:59948-59967 Msa1430680:intron 40.0%
TGTTTATTGCATGTCTCGTG+TGG - tig0026736:59973-59992 Msa1430680:intron 40.0%
TGTGGAAATGTCCGGTTAAA+TGG - tig0026736:60035-60054 Msa1430680:intron 40.0%
GTGGAAATGTCCGGTTAAAT+GGG - tig0026736:60036-60055 Msa1430680:intron 40.0%
AACTATTCTGTGGTCTGAGT+CGG + tig0026736:60126-60145 None:intergenic 40.0%
GGAGTTAACCTGAATCTTTG+GGG - tig0026736:60308-60327 Msa1430680:intron 40.0%
GAGTTAACCTGAATCTTTGG+GGG - tig0026736:60309-60328 Msa1430680:intron 40.0%
ATCAAAACCCCCAAAGATTC+AGG + tig0026736:60319-60338 None:intergenic 40.0%
!!! GTGACTATTGTTTTGAGGCA+AGG + tig0026736:60418-60437 None:intergenic 40.0%
CATTGAAATCAACACACGGA+GGG - tig0026736:60568-60587 Msa1430680:intron 40.0%
GAAGACAAGCAAGAGAATGT+TGG - tig0026736:61026-61045 Msa1430680:CDS 40.0%
! GAATGGCCTTAATTTCTTGC+AGG - tig0026736:61170-61189 Msa1430680:intron 40.0%
!! CAAGTTTGTTTACTGGCTCA+TGG + tig0026736:61326-61345 None:intergenic 40.0%
!! TCTGCGAGTTAAGGTTGATG+TGG + tig0026736:57535-57554 None:intergenic 45.0%
CGACGTTCGAACTTTATCGT+AGG - tig0026736:57761-57780 Msa1430680:CDS 45.0%
CTTTATCGTAGGTCGACGAT+CGG - tig0026736:57772-57791 Msa1430680:CDS 45.0%
GGAGACGAAAGTTAAGAGCA+AGG - tig0026736:58171-58190 Msa1430680:intron 45.0%
!! CGTATGCTCTTAAGTGCTGA+GGG + tig0026736:58450-58469 None:intergenic 45.0%
! GGGACGAGATAACGTGTTTT+AGG + tig0026736:58598-58617 None:intergenic 45.0%
! ACCAAGCTGCAAGCAAGTTT+TGG - tig0026736:58808-58827 Msa1430680:intron 45.0%
! TCCAAAACTTGCTTGCAGCT+TGG + tig0026736:58812-58831 None:intergenic 45.0%
TAGTTTCCTTCCCTGGTTGT+AGG - tig0026736:58835-58854 Msa1430680:intron 45.0%
CATAAACCTACAACCAGGGA+AGG + tig0026736:58844-58863 None:intergenic 45.0%
TGAGGTTGAGGGATTATTGG+TGG - tig0026736:59280-59299 Msa1430680:intron 45.0%
!! AAGAGTGTCCAAGAGAGAGT+GGG - tig0026736:59399-59418 Msa1430680:intron 45.0%
ACACTTGAGGTTCATTTGGC+TGG - tig0026736:59755-59774 Msa1430680:intron 45.0%
CGTGTGGAATATGACAACTG+TGG - tig0026736:59989-60008 Msa1430680:intron 45.0%
!! CCTCCGTGTGTTGATTTCAA+TGG + tig0026736:60570-60589 None:intergenic 45.0%
CCATTGAAATCAACACACGG+AGG - tig0026736:60567-60586 Msa1430680:intron 45.0%
ACAAGAGCTGCCAAACACAT+TGG + tig0026736:60761-60780 None:intergenic 45.0%
GCATGTGACTCAAAGTTGCT+TGG - tig0026736:61065-61084 Msa1430680:CDS 45.0%
ATCACAGTACCAGCAGATGA+TGG + tig0026736:61133-61152 None:intergenic 45.0%
ATCATCTGCTGGTACTGTGA+TGG - tig0026736:61132-61151 Msa1430680:intron 45.0%
GGCTAGACCATAGTGATGAA+TGG - tig0026736:61153-61172 Msa1430680:intron 45.0%
TAAAAGGCCTTCCATCTCCA+TGG - tig0026736:61222-61241 Msa1430680:intron 45.0%
TCTAATGCCATGGAGATGGA+AGG + tig0026736:61232-61251 None:intergenic 45.0%
!! ATATAAATCATATATATATA+TGG + tig0026736:60823-60842 None:intergenic 5.0%
GTAGTCTATGACTGAGGCTC+TGG - tig0026736:58150-58169 Msa1430680:intron 50.0%
! GCGTATGCTCTTAAGTGCTG+AGG + tig0026736:58451-58470 None:intergenic 50.0%
ATTCCAACCTCTCCTTGCTC+CGG - tig0026736:58510-58529 Msa1430680:intron 50.0%
TGGAGCATAGTTTCCTTCCC+TGG - tig0026736:58828-58847 Msa1430680:intron 50.0%
ACCCAGCGTGGGGAAATTTA+TGG - tig0026736:59256-59275 Msa1430680:intron 50.0%
CCCATAAATTTCCCCACGCT+GGG + tig0026736:59260-59279 None:intergenic 50.0%
CCCAGCGTGGGGAAATTTAT+GGG - tig0026736:59257-59276 Msa1430680:intron 50.0%
ACCCATAAATTTCCCCACGC+TGG + tig0026736:59261-59280 None:intergenic 50.0%
CGTGGGGAAATTTATGGGTG+AGG - tig0026736:59262-59281 Msa1430680:intron 50.0%
GGGTGAGGTTGAGGGATTAT+TGG - tig0026736:59277-59296 Msa1430680:intron 50.0%
GGTTGAGGGATTATTGGTGG+CGG - tig0026736:59283-59302 Msa1430680:intron 50.0%
GTCTATGAAAGTGGGTGACG+TGG - tig0026736:59364-59383 Msa1430680:intron 50.0%
!! GAAGAGTGTCCAAGAGAGAG+TGG - tig0026736:59398-59417 Msa1430680:intron 50.0%
ATCGCTTTCCCACTCTCTCT+TGG + tig0026736:59410-59429 None:intergenic 50.0%
AGGTTCATTTGGCTGGTGTG+TGG - tig0026736:59762-59781 Msa1430680:intron 50.0%
AGCAATTCATGGCCGGAGCA+AGG + tig0026736:58525-58544 None:intergenic 55.0%
!! TGAGGGATTATTGGTGGCGG+TGG - tig0026736:59286-59305 Msa1430680:intron 55.0%
! AAGAGGCGTGTTACGGGAGA+GGG + tig0026736:59496-59515 None:intergenic 55.0%
! AAAGAGGCGTGTTACGGGAG+AGG + tig0026736:59497-59516 None:intergenic 55.0%
!! GGAGCATTGCCATCATCTGC+TGG - tig0026736:61121-61140 Msa1430680:intron 55.0%
TTCATGGCCGGAGCAAGGAG+AGG + tig0026736:58520-58539 None:intergenic 60.0%
GGGTGACGTGGCCCTGTAAT+TGG - tig0026736:59376-59395 Msa1430680:intron 60.0%
TGGCCGGAGCAAGGAGAGGT+TGG + tig0026736:58516-58535 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
tig0026736 gene 57427 61406 57427 ID=Msa1430680;Name=Msa1430680
tig0026736 mRNA 57427 61406 57427 ID=Msa1430680-mRNA-1;Parent=Msa1430680;Name=Msa1430680-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0.66|0.75|0.75|0.66|0.75|4|312|111
tig0026736 exon 57427 57879 57427 ID=Msa1430680-mRNA-1:exon:7146;Parent=Msa1430680-mRNA-1
tig0026736 exon 60629 60679 60629 ID=Msa1430680-mRNA-1:exon:7145;Parent=Msa1430680-mRNA-1
tig0026736 exon 60948 61088 60948 ID=Msa1430680-mRNA-1:exon:7144;Parent=Msa1430680-mRNA-1
tig0026736 exon 61404 61406 61404 ID=Msa1430680-mRNA-1:exon:7143;Parent=Msa1430680-mRNA-1
tig0026736 CDS 61404 61406 61404 ID=Msa1430680-mRNA-1:cds;Parent=Msa1430680-mRNA-1
tig0026736 CDS 60948 61088 60948 ID=Msa1430680-mRNA-1:cds;Parent=Msa1430680-mRNA-1
tig0026736 CDS 60629 60679 60629 ID=Msa1430680-mRNA-1:cds;Parent=Msa1430680-mRNA-1
tig0026736 CDS 57739 57879 57739 ID=Msa1430680-mRNA-1:cds;Parent=Msa1430680-mRNA-1
tig0026736 three_prime_UTR 57427 57738 57427 ID=Msa1430680-mRNA-1:three_prime_utr;Parent=Msa1430680-mRNA-1
Gene Sequence

>Msa1430680

ATGATCGCATTTTTCATGGCGACGTTCGAACTTTATCGTAGGTCGACGATCGGACAGTGCTTGACAGATACTTTGGATGATATGGTTCAGAATGGAACTCTTAGTCCTGAACATGCCATTAAGATTCTCGTTCAGTTTGATAAGTCTATGACTGAGGCTCTGGAGACGAAAGTTAAGAGCAAGGTTTCTATCAAGGGACATCTTCATACATACAGATTTTGTGACAATGTCTGGACCTTCATCTTACAAGATGCTTTGTTCAAGAGTGAAGACAAGCAAGAGAATGTTGGACGTGTTAAAATTGTGGCATGTGACTCAAAGTTGCTTGGTCAATAA

Protein sequence

>Msa1430680

MIAFFMATFELYRRSTIGQCLTDTLDDMVQNGTLSPEHAIKILVQFDKSMTEALETKVKSKVSIKGHLHTYRFCDNVWTFILQDALFKSEDKQENVGRVKIVACDSKLLGQ*