AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0006070


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0006070 MtrunA17_Chr1g0150021 94.231 104 6 0 1 104 1 104 3.28e-70 204
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0006070 AT5G10810.1 74.257 101 26 0 3 103 5 105 1.46e-53 163

Find 48 sgRNAs with CRISPR-Local

Find 265 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACATTTAATTGCTAAAATTT+TGG 0.074131 1_1:-8844820 None:intergenic
CTTTCAACATTTGAAGAAAT+TGG 0.132075 1_1:+8844782 Msa0006070:CDS
AGTTGGTTCTTTCACGTTTA+TGG 0.215383 1_1:-8841422 None:intergenic
TATCCTTGTCAAATGTTCTA+TGG 0.248989 1_1:+8845031 Msa0006070:three_prime_UTR
CAGCTAAATAGTACAAAATA+AGG 0.262759 1_1:-8845082 None:intergenic
AAATATCTCTTATGATATTA+TGG 0.278237 1_1:+8843688 Msa0006070:CDS
CCTAACATCTATAACTAAAA+AGG 0.281892 1_1:+8845130 Msa0006070:three_prime_UTR
GTGAAAATCCATAAAAGTTC+TGG 0.340725 1_1:-8841685 None:intergenic
GAAGAAGAGGAAGAAGAAAA+TGG 0.342931 1_1:-8841483 None:intergenic
CTTAATCCACTCTCGATCAT+AGG 0.344190 1_1:-8844751 None:intergenic
TTCTTTACTTGCAGTTATGA+TGG 0.351370 1_1:+8844708 Msa0006070:intron
TTTCTGAAACAAATGACTAT+TGG 0.358570 1_1:+8844989 Msa0006070:three_prime_UTR
CTATGATCGAGAGTGGATTA+AGG 0.376363 1_1:+8844752 Msa0006070:CDS
GGCATGACTTATTTGCTTTG+TGG 0.387715 1_1:+8845177 Msa0006070:three_prime_UTR
AGAAGTTTGAATTAGAATAA+TGG 0.430839 1_1:-8841649 None:intergenic
ACTTATTTGCTTTGTGGTGG+AGG 0.435725 1_1:+8845183 Msa0006070:three_prime_UTR
TAAGAGATATTTCTGACGGC+TGG 0.446674 1_1:-8843677 None:intergenic
TTCGTCTTCGTCTTCTGCTA+TGG 0.451027 1_1:+8841516 Msa0006070:exon
CAATTTCTTCAAATGTTGAA+AGG 0.494842 1_1:-8844781 None:intergenic
GAAGAAGGACGAGGAAGAAG+AGG 0.507814 1_1:-8841496 None:intergenic
TTAATCCACTCTCGATCATA+GGG 0.515090 1_1:-8844750 None:intergenic
GCAGAAGACGAAGACGAAGA+AGG 0.525359 1_1:-8841511 None:intergenic
GAAGAACTTGTCTGTTATGT+CGG 0.539343 1_1:+8844860 Msa0006070:three_prime_UTR
TAACAGACAAGTTCTTCCCT+TGG 0.551586 1_1:-8844854 None:intergenic
AGGTGAGTTGATTATAGTTG+AGG 0.553886 1_1:+8845203 Msa0006070:three_prime_UTR
ATGACTATTGGCAATTAGCA+TGG 0.553974 1_1:+8845001 Msa0006070:three_prime_UTR
TCCATCTCTCTTGCTATCGA+TGG 0.553990 1_1:+8841708 Msa0006070:CDS
AAGTCGAAATTGCCACTGTA+CGG 0.554360 1_1:+8841354 None:intergenic
GCATATGTGGACTGTATGAA+AGG 0.565109 1_1:+8843636 Msa0006070:CDS
ATGACTTATTTGCTTTGTGG+TGG 0.568075 1_1:+8845180 Msa0006070:three_prime_UTR
TATCAAGCAACATAGCCATC+GGG 0.569162 1_1:-8844890 None:intergenic
TTAGTTATAGATGTTAGGAT+CGG 0.569914 1_1:-8845125 None:intergenic
ATATCAAGCAACATAGCCAT+CGG 0.572845 1_1:-8844891 None:intergenic
AAATAAGGATTTGTTTAACA+AGG 0.574289 1_1:-8845067 None:intergenic
TGAATCAGTCTCTTTCGTGT+TGG 0.575103 1_1:-8841458 None:intergenic
GACGAAGACGAAGAAGGACG+AGG 0.577958 1_1:-8841505 None:intergenic
ATCATAAGAGATATTTCTGA+CGG 0.582777 1_1:-8843681 None:intergenic
ACTTTCCCTATGATCGAGAG+TGG 0.592959 1_1:+8844745 Msa0006070:CDS
GATCTCTACAACTTCATAGA+CGG 0.620195 1_1:+8843710 Msa0006070:CDS
ACCATCGATAGCAAGAGAGA+TGG 0.622577 1_1:-8841709 None:intergenic
AATGTAAAGAAAATCACCAA+GGG 0.632124 1_1:+8844838 Msa0006070:three_prime_UTR
ACTGTATGAAAGGAAACTGA+AGG 0.645635 1_1:+8843646 Msa0006070:CDS
ACACTCGAATAAACAAGACT+CGG 0.673837 1_1:-8841388 None:intergenic
TATGTCGGCTATACTCCCGA+TGG 0.682811 1_1:+8844875 Msa0006070:three_prime_UTR
AAATGTAAAGAAAATCACCA+AGG 0.692225 1_1:+8844837 Msa0006070:three_prime_UTR
TAGCCATAGAACATTTGACA+AGG 0.704586 1_1:-8845034 None:intergenic
TTATTCGAGTGTGTGTAGTG+CGG 0.714551 1_1:+8841399 Msa0006070:five_prime_UTR
GACGAGACAAGACCGTACAG+TGG 0.734719 1_1:-8841366 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATATTTAAATTATATT+CGG + chr1_1:8844060-8844079 Msa0006070:intron 0.0%
!! ATAATACGAAAAAATAATAA+AGG - chr1_1:8843346-8843365 None:intergenic 10.0%
!! ATTCTTTCAAATTTCAAATT+AGG + chr1_1:8841564-8841583 Msa0006070:intron 15.0%
!!! TTTTTGTAGTTTTTTGTTTT+TGG + chr1_1:8842014-8842033 Msa0006070:intron 15.0%
!!! AAAAATGATTTTTTTTAACG+TGG + chr1_1:8842311-8842330 Msa0006070:intron 15.0%
!!! TTTTAGATAAATTTCTGAAA+AGG - chr1_1:8842667-8842686 None:intergenic 15.0%
!! AATATACATCATACAATATT+CGG - chr1_1:8842896-8842915 None:intergenic 15.0%
!!! CCTATTTTATTATAAGAATA+AGG - chr1_1:8842991-8843010 None:intergenic 15.0%
!! CCTTATTCTTATAATAAAAT+AGG + chr1_1:8842988-8843007 Msa0006070:intron 15.0%
!! AAACATCATAATATTTAAAC+AGG - chr1_1:8843027-8843046 None:intergenic 15.0%
!! TGTTTAAATATTATGATGTT+TGG + chr1_1:8843026-8843045 Msa0006070:intron 15.0%
!! AAATATCTCTTATGATATTA+TGG + chr1_1:8843688-8843707 Msa0006070:CDS 15.0%
!!! ATTTAATTGCTAAAATTTTG+GGG - chr1_1:8844821-8844840 None:intergenic 15.0%
!!! CATTTAATTGCTAAAATTTT+GGG - chr1_1:8844822-8844841 None:intergenic 15.0%
!!! ACATTTAATTGCTAAAATTT+TGG - chr1_1:8844823-8844842 None:intergenic 15.0%
!! TAATTAATTGCTTTAATCAC+AGG + chr1_1:8841608-8841627 Msa0006070:intron 20.0%
!! AGAAGTTTGAATTAGAATAA+TGG - chr1_1:8841652-8841671 None:intergenic 20.0%
!!! TGTATTTTATTCTATGCATT+TGG + chr1_1:8841778-8841797 Msa0006070:intron 20.0%
!!! ATATGGTTTTCATTAATTTG+TGG + chr1_1:8842147-8842166 Msa0006070:intron 20.0%
!! TATAGTAGTATAATAGTTAG+AGG + chr1_1:8842251-8842270 Msa0006070:intron 20.0%
!!! AAAAAGAAAGCATTATAACA+AGG - chr1_1:8842469-8842488 None:intergenic 20.0%
!! ATGATGAGATTTATTAGTTA+TGG + chr1_1:8842503-8842522 Msa0006070:intron 20.0%
!! CATAAAAAGAAAAGAAACTT+GGG - chr1_1:8842561-8842580 None:intergenic 20.0%
!! ACATAAAAAGAAAAGAAACT+TGG - chr1_1:8842562-8842581 None:intergenic 20.0%
!!! ATGTATATGATGTGATTTTA+AGG - chr1_1:8842764-8842783 None:intergenic 20.0%
!! TATCTTAAATTATGATTGAC+TGG - chr1_1:8842925-8842944 None:intergenic 20.0%
!! CAAAATAAACACAAACTTTA+CGG - chr1_1:8843113-8843132 None:intergenic 20.0%
!!! TTATTTTCTAGGTTGTTAAT+AGG + chr1_1:8843259-8843278 Msa0006070:intron 20.0%
!!! TATTTTCTAGGTTGTTAATA+GGG + chr1_1:8843260-8843279 Msa0006070:intron 20.0%
!!! ATTCTTTGTTGATACTTTTA+AGG + chr1_1:8843366-8843385 Msa0006070:intron 20.0%
!!! TTCTTTGTTGATACTTTTAA+GGG + chr1_1:8843367-8843386 Msa0006070:intron 20.0%
!! AAGTATCAACAAAGAATAAA+GGG - chr1_1:8843562-8843581 None:intergenic 20.0%
!!! AAAGTATCAACAAAGAATAA+AGG - chr1_1:8843563-8843582 None:intergenic 20.0%
!!! TTTTAATCATGTGTTTTTAC+AGG + chr1_1:8843614-8843633 Msa0006070:intron 20.0%
!! ACAAAAGAGAAAAAAGTAAA+TGG + chr1_1:8844088-8844107 Msa0006070:intron 20.0%
!! AATAACTTATTCTTGAATCA+TGG - chr1_1:8844156-8844175 None:intergenic 20.0%
!!! CTTAATTTTCATTTGATTCA+TGG - chr1_1:8844336-8844355 None:intergenic 20.0%
!! TCAAATGAAAATTAAGAGTA+TGG + chr1_1:8844340-8844359 Msa0006070:intron 20.0%
!!! CAAATGAAAATTAAGAGTAT+GGG + chr1_1:8844341-8844360 Msa0006070:intron 20.0%
!!! TGATTGCTCTTTTATATATT+GGG + chr1_1:8844631-8844650 Msa0006070:intron 20.0%
!!! AAATAAGGATTTGTTTAACA+AGG - chr1_1:8845070-8845089 None:intergenic 20.0%
!!! TTGGTATAGTTTTAGATAGT+TGG - chr1_1:8841442-8841461 None:intergenic 25.0%
! TGAAAACCATATATTCTTGA+TGG - chr1_1:8842139-8842158 None:intergenic 25.0%
! CTAATCTGTTATATTTCTCT+AGG - chr1_1:8842191-8842210 None:intergenic 25.0%
!! TACATTTGTTCTCCTTATTT+GGG - chr1_1:8842233-8842252 None:intergenic 25.0%
! ATACATTTGTTCTCCTTATT+TGG - chr1_1:8842234-8842253 None:intergenic 25.0%
!! ACCATCTTAATTTTATACTC+TGG + chr1_1:8842582-8842601 Msa0006070:intron 25.0%
! TAAGAATTCAACACATCAAA+AGG + chr1_1:8842632-8842651 Msa0006070:intron 25.0%
!!! TATATGATGTGATTTTAAGG+AGG - chr1_1:8842761-8842780 None:intergenic 25.0%
!! CGTAAAGTTTGTGTTTATTT+TGG + chr1_1:8843111-8843130 Msa0006070:intron 25.0%
! AAACATACTGTTTCAATATG+TGG + chr1_1:8843184-8843203 Msa0006070:intron 25.0%
!! ACATCTGGAAATTATTTTCT+AGG + chr1_1:8843248-8843267 Msa0006070:intron 25.0%
!! ATTTTCTAGGTTGTTAATAG+GGG + chr1_1:8843261-8843280 Msa0006070:intron 25.0%
! ATAATAAAGGATGTAAATCC+CGG - chr1_1:8843333-8843352 None:intergenic 25.0%
!! TCTTTGTTGATACTTTTAAG+GGG + chr1_1:8843368-8843387 Msa0006070:intron 25.0%
! TCATTATCAGCATTAAATAG+AGG + chr1_1:8843591-8843610 Msa0006070:intron 25.0%
!! ATCATAAGAGATATTTCTGA+CGG - chr1_1:8843684-8843703 None:intergenic 25.0%
!! TTTTTCATTAAGTAGTTGCT+TGG + chr1_1:8843980-8843999 Msa0006070:intron 25.0%
! GAGAAAAAAGTAAATGGTAA+AGG + chr1_1:8844094-8844113 Msa0006070:intron 25.0%
! AAAAGTAAATGGTAAAGGAA+AGG + chr1_1:8844099-8844118 Msa0006070:intron 25.0%
!! CTGTTTAAAACACTACAATT+TGG + chr1_1:8844245-8844264 Msa0006070:intron 25.0%
! TGATTCATGGAGAAAAATAA+TGG - chr1_1:8844323-8844342 None:intergenic 25.0%
!! TCCTAATATTTTTCTCAAGA+GGG - chr1_1:8844564-8844583 None:intergenic 25.0%
!! TTCCTAATATTTTTCTCAAG+AGG - chr1_1:8844565-8844584 None:intergenic 25.0%
! ATACATAGACAGTTGAATAA+AGG - chr1_1:8844610-8844629 None:intergenic 25.0%
!! GTGATTGCTCTTTTATATAT+TGG + chr1_1:8844630-8844649 Msa0006070:intron 25.0%
! CAATTTCTTCAAATGTTGAA+AGG - chr1_1:8844784-8844803 None:intergenic 25.0%
! CTTTCAACATTTGAAGAAAT+TGG + chr1_1:8844782-8844801 Msa0006070:CDS 25.0%
! AAATGTAAAGAAAATCACCA+AGG + chr1_1:8844837-8844856 Msa0006070:three_prime_UTR 25.0%
! AATGTAAAGAAAATCACCAA+GGG + chr1_1:8844838-8844857 Msa0006070:three_prime_UTR 25.0%
!!! TTTCTGAAACAAATGACTAT+TGG + chr1_1:8844989-8845008 Msa0006070:three_prime_UTR 25.0%
! CAGCTAAATAGTACAAAATA+AGG - chr1_1:8845085-8845104 None:intergenic 25.0%
! TTAGTTATAGATGTTAGGAT+CGG - chr1_1:8845128-8845147 None:intergenic 25.0%
!!! CCTTTTTAGTTATAGATGTT+AGG - chr1_1:8845133-8845152 None:intergenic 25.0%
! CCTAACATCTATAACTAAAA+AGG + chr1_1:8845130-8845149 Msa0006070:three_prime_UTR 25.0%
GTGAAAATCCATAAAAGTTC+TGG - chr1_1:8841688-8841707 None:intergenic 30.0%
TTTCATCATTTACCGTTTCT+GGG + chr1_1:8841747-8841766 Msa0006070:intron 30.0%
TCAAAGAATTGGTAGGATTT+GGG + chr1_1:8841850-8841869 Msa0006070:intron 30.0%
TTTGGCAGAAGAAGAATAAA+TGG + chr1_1:8842086-8842105 Msa0006070:intron 30.0%
GCATTACCATCAAGAATATA+TGG + chr1_1:8842130-8842149 Msa0006070:intron 30.0%
GACTTATGAAAACCCAAATA+AGG + chr1_1:8842218-8842237 Msa0006070:intron 30.0%
AGTATAATAGTTAGAGGTAG+AGG + chr1_1:8842257-8842276 Msa0006070:intron 30.0%
TCTGGACATGATTTATGATT+GGG + chr1_1:8842339-8842358 Msa0006070:intron 30.0%
GCCAGAGTATAAAATTAAGA+TGG - chr1_1:8842586-8842605 None:intergenic 30.0%
! TATCTAAAACCCATCAAACA+CGG + chr1_1:8842678-8842697 Msa0006070:intron 30.0%
!! GTGATTTTAAGGAGGAATTA+AGG - chr1_1:8842753-8842772 None:intergenic 30.0%
! ATCACGATTGCATTTAAAAC+AGG - chr1_1:8842807-8842826 None:intergenic 30.0%
TATTGATGTAAGCAGTGAAA+TGG - chr1_1:8842850-8842869 None:intergenic 30.0%
! TAATTTAAGATACTTTCGCG+AGG + chr1_1:8842933-8842952 Msa0006070:intron 30.0%
GTGTTATGGACTTCAAAAAT+TGG + chr1_1:8842955-8842974 Msa0006070:intron 30.0%
!! CTTTGTTGATACTTTTAAGG+GGG + chr1_1:8843369-8843388 Msa0006070:intron 30.0%
ATTGTTTCAATGTGACTGAA+AGG + chr1_1:8843412-8843431 Msa0006070:intron 30.0%
GTTGCATACAATACAACAAA+TGG + chr1_1:8843484-8843503 Msa0006070:intron 30.0%
CATACAATACAACAAATGGT+GGG + chr1_1:8843488-8843507 Msa0006070:intron 30.0%
! TCTCAAAATTTTGCATGCAT+AGG + chr1_1:8843772-8843791 Msa0006070:intron 30.0%
TTGATGTTAGAGAATAAGTG+AGG + chr1_1:8843904-8843923 Msa0006070:intron 30.0%
TGGTCATATCTTGTTGAATT+TGG + chr1_1:8844000-8844019 Msa0006070:intron 30.0%
AAACACTACAATTTGGATCA+AGG + chr1_1:8844252-8844271 Msa0006070:intron 30.0%
AGCAATTATGAGTTTGAAAG+AGG + chr1_1:8844377-8844396 Msa0006070:intron 30.0%
TTCATTATGTCCTTAATTCC+AGG - chr1_1:8844499-8844518 None:intergenic 30.0%
ACCCTCTTGAGAAAAATATT+AGG + chr1_1:8844560-8844579 Msa0006070:intron 30.0%
TAGGAAAATGAAGTGAACTT+AGG + chr1_1:8844579-8844598 Msa0006070:intron 30.0%
TTCTTTACTTGCAGTTATGA+TGG + chr1_1:8844708-8844727 Msa0006070:intron 30.0%
TATCCTTGTCAAATGTTCTA+TGG + chr1_1:8845031-8845050 Msa0006070:three_prime_UTR 30.0%
! TGCAAATGCATTTTCTTATC+TGG + chr1_1:8845156-8845175 Msa0006070:three_prime_UTR 30.0%
ACACTCGAATAAACAAGACT+CGG - chr1_1:8841391-8841410 None:intergenic 35.0%
! AGTTGGTTCTTTCACGTTTA+TGG - chr1_1:8841425-8841444 None:intergenic 35.0%
GAAGAAGAGGAAGAAGAAAA+TGG - chr1_1:8841486-8841505 None:intergenic 35.0%
! TAGAGCTACCAGAACTTTTA+TGG + chr1_1:8841677-8841696 Msa0006070:CDS 35.0%
CTTTCATCATTTACCGTTTC+TGG + chr1_1:8841746-8841765 Msa0006070:intron 35.0%
TACAAGATTGTACCCAGAAA+CGG - chr1_1:8841762-8841781 None:intergenic 35.0%
TCACTCTACTGTCAAAGAAT+TGG + chr1_1:8841839-8841858 Msa0006070:intron 35.0%
TCTACTGTCAAAGAATTGGT+AGG + chr1_1:8841843-8841862 Msa0006070:intron 35.0%
GTCAAAGAATTGGTAGGATT+TGG + chr1_1:8841849-8841868 Msa0006070:intron 35.0%
!!! GCGTCATGCTTGTTATATTT+TGG + chr1_1:8842036-8842055 Msa0006070:intron 35.0%
! TGGTGTAGTTGATGCAATTA+AGG + chr1_1:8842106-8842125 Msa0006070:intron 35.0%
!!! TTTTTTAACGTGGTTTGCTC+TGG + chr1_1:8842321-8842340 Msa0006070:intron 35.0%
CTCTGGACATGATTTATGAT+TGG + chr1_1:8842338-8842357 Msa0006070:intron 35.0%
AGTAAGAAAACGACAGTGAA+AGG - chr1_1:8842402-8842421 None:intergenic 35.0%
! ATCTAAAACCCATCAAACAC+GGG + chr1_1:8842679-8842698 Msa0006070:intron 35.0%
TAAGGAGGAATTAAGGCAAT+TGG - chr1_1:8842746-8842765 None:intergenic 35.0%
! CATTTAAAACAGGCGATTGA+AGG - chr1_1:8842797-8842816 None:intergenic 35.0%
ATGTAAGCAGTGAAATGGTT+AGG - chr1_1:8842845-8842864 None:intergenic 35.0%
TTATGATGTTTGGCTGTATG+AGG + chr1_1:8843036-8843055 Msa0006070:intron 35.0%
AAGTCCATCAATTATGTGCT+TGG + chr1_1:8843074-8843093 Msa0006070:intron 35.0%
AACACCAAGCACATAATTGA+TGG - chr1_1:8843081-8843100 None:intergenic 35.0%
!!! CAATTATGTGCTTGGTGTTT+TGG + chr1_1:8843082-8843101 Msa0006070:intron 35.0%
TCATTGCTTCACAGTGATAT+AGG + chr1_1:8843220-8843239 Msa0006070:intron 35.0%
GTGATATAGGACAATACATC+TGG + chr1_1:8843233-8843252 Msa0006070:intron 35.0%
TCTTGTGTGAAAACAAGGTA+AGG + chr1_1:8843462-8843481 Msa0006070:intron 35.0%
GCATACAATACAACAAATGG+TGG + chr1_1:8843487-8843506 Msa0006070:intron 35.0%
!! TGTGTTTTTACAGGCATATG+TGG + chr1_1:8843623-8843642 Msa0006070:intron 35.0%
ACTGTATGAAAGGAAACTGA+AGG + chr1_1:8843646-8843665 Msa0006070:CDS 35.0%
GATCTCTACAACTTCATAGA+CGG + chr1_1:8843710-8843729 Msa0006070:CDS 35.0%
AGAGAGGATATACTGATGAT+TGG + chr1_1:8844124-8844143 Msa0006070:intron 35.0%
! ATTTTATGCTGAGCTAGAAC+CGG + chr1_1:8844208-8844227 Msa0006070:intron 35.0%
AAAGAAGAGGAATCTAGAGA+GGG - chr1_1:8844475-8844494 None:intergenic 35.0%
TAAAGAAGAGGAATCTAGAG+AGG - chr1_1:8844476-8844495 None:intergenic 35.0%
CTTAATTCCAGGTAAAGAAG+AGG - chr1_1:8844488-8844507 None:intergenic 35.0%
CTCTTCTTTACCTGGAATTA+AGG + chr1_1:8844486-8844505 Msa0006070:intron 35.0%
TTAATCCACTCTCGATCATA+GGG - chr1_1:8844753-8844772 None:intergenic 35.0%
GAAGAACTTGTCTGTTATGT+CGG + chr1_1:8844860-8844879 Msa0006070:three_prime_UTR 35.0%
ATATCAAGCAACATAGCCAT+CGG - chr1_1:8844894-8844913 None:intergenic 35.0%
ATGACTATTGGCAATTAGCA+TGG + chr1_1:8845001-8845020 Msa0006070:three_prime_UTR 35.0%
TAGCCATAGAACATTTGACA+AGG - chr1_1:8845037-8845056 None:intergenic 35.0%
ATGACTTATTTGCTTTGTGG+TGG + chr1_1:8845180-8845199 Msa0006070:three_prime_UTR 35.0%
TTATTCGAGTGTGTGTAGTG+CGG + chr1_1:8841399-8841418 Msa0006070:five_prime_UTR 40.0%
TGAATCAGTCTCTTTCGTGT+TGG - chr1_1:8841461-8841480 None:intergenic 40.0%
AAGAATTGGTAGGATTTGGG+TGG + chr1_1:8841853-8841872 Msa0006070:intron 40.0%
CAATTCACTGAATGAACGCT+AGG + chr1_1:8841934-8841953 Msa0006070:intron 40.0%
!!! TTTGGTTTTAACCGTGCCTT+TGG + chr1_1:8842054-8842073 Msa0006070:intron 40.0%
AATTCCACAATCCAAAGGCA+CGG - chr1_1:8842068-8842087 None:intergenic 40.0%
TGCCTTTGGATTGTGGAATT+TGG + chr1_1:8842068-8842087 Msa0006070:intron 40.0%
TGCCAAATTCCACAATCCAA+AGG - chr1_1:8842073-8842092 None:intergenic 40.0%
GGAAAGACTAGAGCAATTGT+AGG + chr1_1:8842278-8842297 Msa0006070:intron 40.0%
! AAAGGCTTTTCTCACAAGGT+GGG - chr1_1:8842384-8842403 None:intergenic 40.0%
! AGTGAAAGGCTTTTCTCACA+AGG - chr1_1:8842388-8842407 None:intergenic 40.0%
ACTTGGGAATCACAAAGTCA+AGG - chr1_1:8842545-8842564 None:intergenic 40.0%
GAATTCTTAGTTGTCTGCCA+AGG - chr1_1:8842621-8842640 None:intergenic 40.0%
AATCAGTACCCGTGTTTGAT+GGG - chr1_1:8842690-8842709 None:intergenic 40.0%
TAATCAGTACCCGTGTTTGA+TGG - chr1_1:8842691-8842710 None:intergenic 40.0%
AGGAATTAAGGCAATTGGAG+GGG - chr1_1:8842741-8842760 None:intergenic 40.0%
GAGGAATTAAGGCAATTGGA+GGG - chr1_1:8842742-8842761 None:intergenic 40.0%
!!! TTGTGTTTATTTTGGCGAGC+AGG + chr1_1:8843119-8843138 Msa0006070:intron 40.0%
!!! TGTGTTTATTTTGGCGAGCA+GGG + chr1_1:8843120-8843139 Msa0006070:intron 40.0%
! ACAATTTTACCGTTGTGCCA+AGG - chr1_1:8843397-8843416 None:intergenic 40.0%
TCAATGTGACTGAAAGGTCA+CGG + chr1_1:8843418-8843437 Msa0006070:intron 40.0%
ACAAAGAATAAAGGGCAACC+CGG - chr1_1:8843554-8843573 None:intergenic 40.0%
! GCATATGTGGACTGTATGAA+AGG + chr1_1:8843636-8843655 Msa0006070:CDS 40.0%
! TAAGAGATATTTCTGACGGC+TGG - chr1_1:8843680-8843699 None:intergenic 40.0%
TAGAGAATAAGTGAGGTGAG+AGG + chr1_1:8843911-8843930 Msa0006070:intron 40.0%
AACAGAACAGACTAACAGTC+CGG - chr1_1:8844230-8844249 None:intergenic 40.0%
!! CATTAGCTTTACCAACAGAG+AGG - chr1_1:8844293-8844312 None:intergenic 40.0%
! AAGAGTATGGGTGAGAACAT+TGG + chr1_1:8844353-8844372 Msa0006070:intron 40.0%
AAGAGGTCTTAAACCCTTGA+AGG + chr1_1:8844394-8844413 Msa0006070:intron 40.0%
CCAACAGATTACTCCTTCAA+GGG - chr1_1:8844410-8844429 None:intergenic 40.0%
TCCAACAGATTACTCCTTCA+AGG - chr1_1:8844411-8844430 None:intergenic 40.0%
AAGAAGAGGAATCTAGAGAG+GGG - chr1_1:8844474-8844493 None:intergenic 40.0%
CTAGATTCCTCTTCTTTACC+TGG + chr1_1:8844478-8844497 Msa0006070:intron 40.0%
TTTCTCAAGAGGGTTACAAC+AGG - chr1_1:8844554-8844573 None:intergenic 40.0%
GTTTGCCTTGGAATTGGTTA+AGG + chr1_1:8844673-8844692 Msa0006070:intron 40.0%
GCAAGTAAAGAACAACCAAC+TGG - chr1_1:8844700-8844719 None:intergenic 40.0%
CTTAATCCACTCTCGATCAT+AGG - chr1_1:8844754-8844773 None:intergenic 40.0%
!! CTATGATCGAGAGTGGATTA+AGG + chr1_1:8844752-8844771 Msa0006070:CDS 40.0%
TAACAGACAAGTTCTTCCCT+TGG - chr1_1:8844857-8844876 None:intergenic 40.0%
TATCAAGCAACATAGCCATC+GGG - chr1_1:8844893-8844912 None:intergenic 40.0%
GGCATGACTTATTTGCTTTG+TGG + chr1_1:8845177-8845196 Msa0006070:three_prime_UTR 40.0%
ACTTATTTGCTTTGTGGTGG+AGG + chr1_1:8845183-8845202 Msa0006070:three_prime_UTR 40.0%
TTCGTCTTCGTCTTCTGCTA+TGG + chr1_1:8841516-8841535 Msa0006070:exon 45.0%
! TCCATCTCTCTTGCTATCGA+TGG + chr1_1:8841708-8841727 Msa0006070:CDS 45.0%
ACCATCGATAGCAAGAGAGA+TGG - chr1_1:8841712-8841731 None:intergenic 45.0%
TTAACCGTGCCTTTGGATTG+TGG + chr1_1:8842061-8842080 Msa0006070:intron 45.0%
! AAGGCTTTTCTCACAAGGTG+GGG - chr1_1:8842383-8842402 None:intergenic 45.0%
! GAAAGGCTTTTCTCACAAGG+TGG - chr1_1:8842385-8842404 None:intergenic 45.0%
TCTGCCAAGGAAGTAGGTTT+AGG - chr1_1:8842608-8842627 None:intergenic 45.0%
TAGTTGTCTGCCAAGGAAGT+AGG - chr1_1:8842614-8842633 None:intergenic 45.0%
AGGGGGTTATACAGTAAGGT+TGG - chr1_1:8842723-8842742 None:intergenic 45.0%
TTGGAGGGGGTTATACAGTA+AGG - chr1_1:8842727-8842746 None:intergenic 45.0%
GGAATTAAGGCAATTGGAGG+GGG - chr1_1:8842740-8842759 None:intergenic 45.0%
GGAGGAATTAAGGCAATTGG+AGG - chr1_1:8842743-8842762 None:intergenic 45.0%
! GATACTTTCGCGAGGTGTTA+TGG + chr1_1:8842941-8842960 Msa0006070:intron 45.0%
TGATGTTTGGCTGTATGAGG+TGG + chr1_1:8843039-8843058 Msa0006070:intron 45.0%
CGTATTGTTGAGCACAATGG+CGG - chr1_1:8843301-8843320 None:intergenic 45.0%
GCACGTATTGTTGAGCACAA+TGG - chr1_1:8843304-8843323 None:intergenic 45.0%
CAACAATACGTGCCTCTATC+CGG + chr1_1:8843311-8843330 Msa0006070:intron 45.0%
AACAATACGTGCCTCTATCC+GGG + chr1_1:8843312-8843331 Msa0006070:intron 45.0%
AGGATGTAAATCCCGGATAG+AGG - chr1_1:8843326-8843345 None:intergenic 45.0%
CAATGTGACTGAAAGGTCAC+GGG + chr1_1:8843419-8843438 Msa0006070:intron 45.0%
CAGGCTCTTGTGTGAAAACA+AGG + chr1_1:8843457-8843476 Msa0006070:intron 45.0%
! CTGATGCTTCGAGCTTTTCA+TGG + chr1_1:8843939-8843958 Msa0006070:intron 45.0%
TGGTAAAGGAAAGGCAAGAG+AGG + chr1_1:8844108-8844127 Msa0006070:intron 45.0%
TAACCTAACTGCCTCTCTGT+TGG + chr1_1:8844279-8844298 Msa0006070:intron 45.0%
TTACCAACAGAGAGGCAGTT+AGG - chr1_1:8844285-8844304 None:intergenic 45.0%
CCCTTGAAGGAGTAATCTGT+TGG + chr1_1:8844407-8844426 Msa0006070:intron 45.0%
GAAGGAGTAATCTGTTGGAG+TGG + chr1_1:8844412-8844431 Msa0006070:intron 45.0%
AGAAGAGGAATCTAGAGAGG+GGG - chr1_1:8844473-8844492 None:intergenic 45.0%
! TGTGTGGTTTGCCTTGGAAT+TGG + chr1_1:8844667-8844686 Msa0006070:intron 45.0%
CTGGTCCTTAACCAATTCCA+AGG - chr1_1:8844681-8844700 None:intergenic 45.0%
GGAATTGGTTAAGGACCAGT+TGG + chr1_1:8844682-8844701 Msa0006070:intron 45.0%
ACTTTCCCTATGATCGAGAG+TGG + chr1_1:8844745-8844764 Msa0006070:CDS 45.0%
!!! TTAAAAAAAATCATTTTTAA+CGG - chr1_1:8842309-8842328 None:intergenic 5.0%
!!! AGTATAATTTTATTATTTTT+TGG - chr1_1:8843863-8843882 None:intergenic 5.0%
GAAGAAGGACGAGGAAGAAG+AGG - chr1_1:8841499-8841518 None:intergenic 50.0%
GCAGAAGACGAAGACGAAGA+AGG - chr1_1:8841514-8841533 None:intergenic 50.0%
CTGGCCTAAACCTACTTCCT+TGG + chr1_1:8842601-8842620 Msa0006070:intron 50.0%
!!! ATACTTTTAAGGGGGCGCCT+TGG + chr1_1:8843377-8843396 Msa0006070:intron 50.0%
TCACACAAGAGCCTGTTTCC+AGG - chr1_1:8843452-8843471 None:intergenic 50.0%
GTAATCTGTTGGAGTGGCAC+TGG + chr1_1:8844418-8844437 Msa0006070:intron 50.0%
AAGAGGAATCTAGAGAGGGG+GGG - chr1_1:8844471-8844490 None:intergenic 50.0%
GAAGAGGAATCTAGAGAGGG+GGG - chr1_1:8844472-8844491 None:intergenic 50.0%
GGGCTTTCTTTGTGCATGTG+TGG + chr1_1:8844651-8844670 Msa0006070:intron 50.0%
! TGTGCATGTGTGGTTTGCCT+TGG + chr1_1:8844661-8844680 Msa0006070:intron 50.0%
! TATGTCGGCTATACTCCCGA+TGG + chr1_1:8844875-8844894 Msa0006070:three_prime_UTR 50.0%
GACGAGACAAGACCGTACAG+TGG - chr1_1:8841369-8841388 None:intergenic 55.0%
GACGAAGACGAAGAAGGACG+AGG - chr1_1:8841508-8841527 None:intergenic 55.0%
!! ATTTTGGCGAGCAGGGTCTG+TGG + chr1_1:8843127-8843146 Msa0006070:intron 55.0%
AAGGTCACGGGTTCAAGTCC+TGG + chr1_1:8843431-8843450 Msa0006070:intron 55.0%
CGGGTTCAAGTCCTGGAAAC+AGG + chr1_1:8843438-8843457 Msa0006070:intron 55.0%
CAAAAGCTCCCGCATACGCA+GGG - chr1_1:8843527-8843546 None:intergenic 55.0%
ACAAAAGCTCCCGCATACGC+AGG - chr1_1:8843528-8843547 None:intergenic 55.0%
! ATGCGGGAGCTTTTGTGCAC+CGG + chr1_1:8843532-8843551 Msa0006070:intron 55.0%
AGAGGAATCTAGAGAGGGGG+GGG - chr1_1:8844470-8844489 None:intergenic 55.0%
! CAAATGGTGGGACCCCTTCC+CGG + chr1_1:8843500-8843519 Msa0006070:intron 60.0%
! TGCGGGAGCTTTTGTGCACC+GGG + chr1_1:8843533-8843552 Msa0006070:intron 60.0%
AGGAATCTAGAGAGGGGGGG+GGG - chr1_1:8844468-8844487 None:intergenic 60.0%
GAGGAATCTAGAGAGGGGGG+GGG - chr1_1:8844469-8844488 None:intergenic 60.0%
!! AAGGGGGCGCCTTGGCACAA+CGG + chr1_1:8843385-8843404 Msa0006070:intron 65.0%
CATACGCAGGGTCCGGGAAG+GGG - chr1_1:8843515-8843534 None:intergenic 65.0%
GCATACGCAGGGTCCGGGAA+GGG - chr1_1:8843516-8843535 None:intergenic 65.0%
CTTCCCGGACCCTGCGTATG+CGG + chr1_1:8843515-8843534 Msa0006070:intron 65.0%
TTCCCGGACCCTGCGTATGC+GGG + chr1_1:8843516-8843535 Msa0006070:intron 65.0%
AATCTAGAGAGGGGGGGGGG+GGG - chr1_1:8844465-8844484 None:intergenic 65.0%
GAATCTAGAGAGGGGGGGGG+GGG - chr1_1:8844466-8844485 None:intergenic 65.0%
GGAATCTAGAGAGGGGGGGG+GGG - chr1_1:8844467-8844486 None:intergenic 65.0%
CGCATACGCAGGGTCCGGGA+AGG - chr1_1:8843517-8843536 None:intergenic 70.0%
CTCCCGCATACGCAGGGTCC+GGG - chr1_1:8843521-8843540 None:intergenic 70.0%
GCTCCCGCATACGCAGGGTC+CGG - chr1_1:8843522-8843541 None:intergenic 70.0%
ATCTAGAGAGGGGGGGGGGG+GGG - chr1_1:8844464-8844483 None:intergenic 70.0%
TCTAGAGAGGGGGGGGGGGG+GGG - chr1_1:8844463-8844482 None:intergenic 75.0%
! TAGAGAGGGGGGGGGGGGGG+GGG - chr1_1:8844461-8844480 None:intergenic 80.0%
! CTAGAGAGGGGGGGGGGGGG+GGG - chr1_1:8844462-8844481 None:intergenic 80.0%
! GGGGGGGGGGGGGGGGGAAA+GGG - chr1_1:8844453-8844472 None:intergenic 85.0%
! AGAGAGGGGGGGGGGGGGGG+GGG - chr1_1:8844460-8844479 None:intergenic 85.0%
! GGGGGGGGGGGGGGGGGGAA+AGG - chr1_1:8844454-8844473 None:intergenic 90.0%
! GAGAGGGGGGGGGGGGGGGG+GGG - chr1_1:8844459-8844478 None:intergenic 90.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 8841356 8845222 8841356 ID=Msa0006070;Name=Msa0006070
chr1_1 mRNA 8841356 8845222 8841356 ID=Msa0006070-mRNA-1;Parent=Msa0006070;Name=Msa0006070-mRNA-1;_AED=0.04;_eAED=0.04;_QI=179|1|1|1|1|1|4|410|104
chr1_1 exon 8841356 8841537 8841356 ID=Msa0006070-mRNA-1:exon:3120;Parent=Msa0006070-mRNA-1
chr1_1 exon 8841630 8841729 8841630 ID=Msa0006070-mRNA-1:exon:3121;Parent=Msa0006070-mRNA-1
chr1_1 exon 8843636 8843756 8843636 ID=Msa0006070-mRNA-1:exon:3122;Parent=Msa0006070-mRNA-1
chr1_1 exon 8844722 8845222 8844722 ID=Msa0006070-mRNA-1:exon:3123;Parent=Msa0006070-mRNA-1
chr1_1 five_prime_UTR 8841356 8841534 8841356 ID=Msa0006070-mRNA-1:five_prime_utr;Parent=Msa0006070-mRNA-1
chr1_1 CDS 8841535 8841537 8841535 ID=Msa0006070-mRNA-1:cds;Parent=Msa0006070-mRNA-1
chr1_1 CDS 8841630 8841729 8841630 ID=Msa0006070-mRNA-1:cds;Parent=Msa0006070-mRNA-1
chr1_1 CDS 8843636 8843756 8843636 ID=Msa0006070-mRNA-1:cds;Parent=Msa0006070-mRNA-1
chr1_1 CDS 8844722 8844812 8844722 ID=Msa0006070-mRNA-1:cds;Parent=Msa0006070-mRNA-1
chr1_1 three_prime_UTR 8844813 8845222 8844813 ID=Msa0006070-mRNA-1:three_prime_utr;Parent=Msa0006070-mRNA-1
Gene Sequence

>Msa0006070

ATGGCTAACAGTGATCGTCACACCATTATTCTAATTCAAACTTCTCACAGTAGAGCTACCAGAACTTTTATGGATTTTCACTCCATCTCTCTTGCTATCGATGGCATATGTGGACTGTATGAAAGGAAACTGAAGGACTTGAATCCAGCCGTCAGAAATATCTCTTATGATATTATGGATCTCTACAACTTCATAGACGGTCTTGCAGACATGAGTGCTCTAGTTTATGATGGTTCAAAGCATGCTTACTTTCCCTATGATCGAGAGTGGATTAAGGAACGAACCTTTCAACATTTGAAGAAATTGGCACGTTGA

Protein sequence

>Msa0006070

MANSDRHTIILIQTSHSRATRTFMDFHSISLAIDGICGLYERKLKDLNPAVRNISYDIMDLYNFIDGLADMSALVYDGSKHAYFPYDREWIKERTFQHLKKLAR*