AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0012040

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0012040 MtrunA17_Chr1g0161051 96.651 209 7 0 1 209 1 209 6.90e-153 422
Msa0012040 MtrunA17_Chr1g0161061 61.463 205 67 1 1 205 1 193 1.91e-89 261
Msa0012040 MtrunA17_Chr1g0186321 50.000 168 84 0 33 200 62 229 4.63e-57 180
Msa0012040 MtrunA17_Chr7g0274451 48.810 168 86 0 33 200 64 231 6.12e-55 175
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0012040 AT1G70680.1 63.187 182 67 0 24 205 9 190 8.02e-82 242
Msa0012040 AT1G70670.1 59.890 182 73 0 26 207 10 191 1.60e-79 236
Msa0012040 AT1G23240.3 57.485 167 71 0 33 199 2 168 3.63e-69 209
Msa0012040 AT1G23240.1 57.485 167 71 0 33 199 28 194 4.87e-69 210
Msa0012040 AT1G23240.4 57.485 167 71 0 33 199 37 203 7.32e-69 210
Msa0012040 AT1G70680.2 62.500 152 57 0 54 205 5 156 2.87e-64 196
Msa0012040 AT5G55240.1 45.989 187 97 1 22 204 49 235 7.45e-55 175
Msa0012040 AT4G26740.1 46.591 176 90 1 29 200 57 232 1.88e-54 174
Msa0012040 AT2G33380.1 45.562 169 92 0 33 201 60 228 7.73e-52 167
Msa0012040 AT1G23240.2 59.055 127 52 0 33 159 37 163 9.73e-52 165
Msa0012040 AT1G23250.2 48.252 143 71 2 57 199 20 159 1.42e-40 136
Msa0012040 AT1G23250.1 48.252 143 71 2 57 199 50 189 6.26e-40 135
Msa0012040 AT2G33380.2 38.462 169 62 2 33 201 60 186 1.49e-37 129
Msa0012040 AT5G29560.1 48.148 108 56 0 33 140 63 170 3.63e-32 115

Find 176 sgRNAs with CRISPR-Local

Find 457 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAACACAATTTATCAATTT+TGG 0.122860 1_1:+18132347 None:intergenic
ACTTATTTAAATTGATTATA+TGG 0.144706 1_1:-18132992 Msa0012040:five_prime_UTR
GCAACACTTATAAGTTAATT+TGG 0.174035 1_1:-18131161 Msa0012040:five_prime_UTR
TCAATTTAAATAAGTAAATA+TGG 0.178434 1_1:+18133000 None:intergenic
TGAAATTTGCAAACATTAAT+TGG 0.188338 1_1:+18132428 None:intergenic
TCCTAATTCGGTTGGTAATT+AGG 0.198294 1_1:-18127987 Msa0012040:exon
ACAACAGCAATGCGTGAAAT+TGG 0.210121 1_1:-18130374 Msa0012040:intron
TCCTTTAAAATCATGTAATT+TGG 0.212487 1_1:-18131657 Msa0012040:five_prime_UTR
AGATTGACATTAAATCTATA+TGG 0.225683 1_1:+18132673 None:intergenic
TGAAGATAGCTAGATATATT+AGG 0.231501 1_1:+18132482 None:intergenic
ATCTCATAGCTTATCTGATT+TGG 0.241110 1_1:+18133386 None:intergenic
ATATCTTACGTTATTGTATA+AGG 0.245050 1_1:-18131476 Msa0012040:five_prime_UTR
AAGCAAACCATTCTTGTCTT+TGG 0.246204 1_1:+18128091 None:intergenic
TAATAGCGGCAACTATTTAA+AGG 0.250828 1_1:-18133437 Msa0012040:five_prime_UTR
ACTAATAATTTCACCTAGTA+TGG 0.252858 1_1:+18132947 None:intergenic
GTCCTTCACATGTTAATTTC+AGG 0.264916 1_1:-18133266 Msa0012040:five_prime_UTR
ACCAACTGTTGCTCCTTTAG+AGG 0.275755 1_1:-18131795 Msa0012040:five_prime_UTR
TGATGATCTAAACACATATT+TGG 0.280613 1_1:-18132253 Msa0012040:five_prime_UTR
TCTTCATTTCCTATCAATTT+CGG 0.298586 1_1:-18137034 Msa0012040:five_prime_UTR
CTTGTTTGAATTGCTGAAAA+AGG 0.298907 1_1:-18128033 Msa0012040:CDS
TCCTAATTACCAACCGAATT+AGG 0.299438 1_1:+18127986 None:intergenic
TGGATATTCTTAACTTCAAT+TGG 0.307296 1_1:+18128853 None:intergenic
TGTAAATTGCAGGAGCGTTT+GGG 0.311292 1_1:-18136228 Msa0012040:intron
AAGAAGGTAGAGGAGGAAAA+AGG 0.313651 1_1:+18137057 None:intergenic
TTGTTCAGATTCGCAACTTA+TGG 0.316308 1_1:-18134800 Msa0012040:intron
GAGGGAGGAAACTGGAAGTT+AGG 0.318872 1_1:-18131622 Msa0012040:five_prime_UTR
TCGTACAACTGGTGCAGTTT+TGG 0.331266 1_1:+18132018 None:intergenic
GAAGATAGCTAGATATATTA+GGG 0.333706 1_1:+18132483 None:intergenic
GTAGTAGCTTCTGCACAAAT+TGG 0.335019 1_1:+18131981 None:intergenic
TGTCTCTCTTTCATTATTTG+TGG 0.336645 1_1:-18133335 Msa0012040:five_prime_UTR
TTCGCAACTTATGGTTTGAT+TGG 0.348026 1_1:-18134791 Msa0012040:five_prime_UTR
TGGAAGTTAGGGAAATTATA+TGG 0.349227 1_1:-18131610 Msa0012040:five_prime_UTR
AGAATTACTTCATCCTAATT+CGG 0.349772 1_1:-18127999 Msa0012040:exon
TCATCATATGTTAAAGCATT+TGG 0.356094 1_1:+18128607 None:intergenic
TGGCGGTGGGATACATAAAA+AGG 0.356989 1_1:+18132578 None:intergenic
ATGTAAATTGCAGGAGCGTT+TGG 0.370234 1_1:-18136229 Msa0012040:intron
AAGAAATCAACAAAATTTAG+TGG 0.370862 1_1:+18132850 None:intergenic
CACTCCCATGTTTGCCCCGT+TGG 0.374563 1_1:+18128833 None:intergenic
CGCACGAAACAGAGAGCATT+TGG 0.376270 1_1:+18133288 None:intergenic
TGAGACAGGACGCACACTTC+TGG 0.386300 1_1:-18136733 Msa0012040:five_prime_UTR
TTTACACAGTAATTTGATTA+CGG 0.390532 1_1:-18127877 Msa0012040:three_prime_UTR
TATTAGTGTACAAAGCAAAA+AGG 0.392076 1_1:+18131092 None:intergenic
GCGCTGCTTCCTCATTCTTC+CGG 0.396376 1_1:+18135030 None:intergenic
CTTATTTAAATTGATTATAT+GGG 0.403031 1_1:-18132991 Msa0012040:five_prime_UTR
TCTGAATTTCAAAAGTATAG+TGG 0.405284 1_1:+18132742 None:intergenic
GATTGACATTAAATCTATAT+GGG 0.407709 1_1:+18132674 None:intergenic
AGAGAGAGAGTGAGGAAAAG+AGG 0.412920 1_1:+18137112 None:intergenic
TTTAAAGGAATATGAAACTT+TGG 0.418067 1_1:+18131362 None:intergenic
AGATGACTGAGGGAGGAAAC+TGG 0.420552 1_1:-18131630 Msa0012040:five_prime_UTR
AACCTTCCTTTGACATCTTT+AGG 0.422579 1_1:+18128553 None:intergenic
TTCTTGTTATCATATGATAC+AGG 0.422673 1_1:+18131055 None:intergenic
GTTGAGTGAAAAGATGAAAC+AGG 0.423208 1_1:+18132552 None:intergenic
TTTCTAGCCCGTGCGTTGCA+CGG 0.429569 1_1:-18131227 Msa0012040:five_prime_UTR
GAAAACCACCCTCGTACAAC+TGG 0.430384 1_1:+18132007 None:intergenic
AGATACTGCTAATACTGTTA+TGG 0.430468 1_1:-18132223 Msa0012040:five_prime_UTR
ATTTCATGATACATGTACTT+TGG 0.433593 1_1:-18132411 Msa0012040:five_prime_UTR
TCGCAACTTATGGTTTGATT+GGG 0.434448 1_1:-18134790 Msa0012040:intron
TCATATGTAGGATTTGTTGA+TGG 0.435999 1_1:-18130944 Msa0012040:intron
GTGAAGCGGCCGAAATTGAT+AGG 0.436026 1_1:+18137025 None:intergenic
ATTTAGTAGTTAATATAAGA+AGG 0.436457 1_1:-18136137 Msa0012040:five_prime_UTR
TTCTAGCCCGTGCGTTGCAC+GGG 0.437626 1_1:-18131226 Msa0012040:five_prime_UTR
TCAATGTGCTATAATATCTC+TGG 0.437811 1_1:-18132884 Msa0012040:five_prime_UTR
CAACAGCAATGCGTGAAATT+GGG 0.440569 1_1:-18130373 Msa0012040:intron
GGAGCAACAGTTGGTTGAGC+AGG 0.441270 1_1:+18131803 None:intergenic
TTCTTTGACTTGAATCATGA+TGG 0.443395 1_1:-18130863 Msa0012040:CDS
GGGTTGGTAGCTTTGTTGAA+TGG 0.445777 1_1:-18128133 Msa0012040:CDS
AAGCTACTACTCATATGAAT+AGG 0.447344 1_1:-18131968 Msa0012040:intron
TCAATGAAATTGGATTGATA+AGG 0.450852 1_1:-18133694 Msa0012040:intron
TCTGCATTCCAAGCTATAGT+TGG 0.455870 1_1:-18133727 Msa0012040:five_prime_UTR
AATATCCAACGGGGCAAACA+TGG 0.456851 1_1:-18128838 Msa0012040:CDS
AGAGTGAGGAAAAGAGGAAG+TGG 0.458343 1_1:+18137118 None:intergenic
TGAAGTTAAGAATATCCAAC+GGG 0.458555 1_1:-18128848 Msa0012040:CDS
ATGTTAGTAGAGGAATTAGA+AGG 0.461240 1_1:+18131511 None:intergenic
TACTGTTATGGCTATTCAGT+TGG 0.464739 1_1:-18132211 Msa0012040:five_prime_UTR
GTTTGTTGCATCTAAATTTG+AGG 0.466576 1_1:-18128659 Msa0012040:CDS
CTTATCAATTTATGCATCAC+GGG 0.466655 1_1:-18131423 Msa0012040:five_prime_UTR
CTAAACACATATTTGGCTGC+TGG 0.467535 1_1:-18132246 Msa0012040:five_prime_UTR
GCCTATGTTGTATACAATGA+TGG 0.468396 1_1:+18131687 None:intergenic
GGGATTTGAGTAAGTGCATA+TGG 0.470501 1_1:+18131824 None:intergenic
TTACAGAGAAATTCCTCTAA+AGG 0.472574 1_1:+18131782 None:intergenic
GGTCTCAAAATTTAACTTGG+TGG 0.473530 1_1:+18136933 None:intergenic
TGTGTTTGAGAGAGAAAGTG+AGG 0.475441 1_1:+18137148 None:intergenic
ATGATGGTGTTATTTATCCA+TGG 0.477891 1_1:-18130847 Msa0012040:CDS
GTGAGGAAAAGAGGAAGTGG+TGG 0.478586 1_1:+18137121 None:intergenic
AATAATATATGAATAATAGA+TGG 0.482712 1_1:-18131568 Msa0012040:five_prime_UTR
TAACACTCAAAGAGATATCA+AGG 0.488298 1_1:-18131762 Msa0012040:five_prime_UTR
CAATTTAAATAAGTAAATAT+GGG 0.492617 1_1:+18133001 None:intergenic
TAGCCCGTGCGTTGCACGGG+TGG 0.494151 1_1:-18131223 Msa0012040:five_prime_UTR
TTCTATATCAACAAAGCAAA+AGG 0.495155 1_1:-18127960 Msa0012040:three_prime_UTR
AAACTTGCCAAAGACAAGAA+TGG 0.495506 1_1:-18128098 Msa0012040:CDS
GGGGTTGAATCATTCACCAT+GGG 0.495753 1_1:-18136208 Msa0012040:five_prime_UTR
GATGAAACAGGCCTTGGCGG+TGG 0.496961 1_1:+18132564 None:intergenic
TATCCATGGGAGACTTTCCA+AGG 0.502495 1_1:-18130833 Msa0012040:intron
TGAGGAAGCAGCGCATACTT+TGG 0.507244 1_1:-18135021 Msa0012040:five_prime_UTR
TTACTTCATCCTAATTCGGT+TGG 0.510841 1_1:-18127995 Msa0012040:exon
GGCAAACATGGGAGTGACAC+TGG 0.512670 1_1:-18128826 Msa0012040:CDS
TGAAAAGATGAAACAGGCCT+TGG 0.521447 1_1:+18132558 None:intergenic
TGATAGGAAATGAAGAAAGA+AGG 0.521805 1_1:+18137041 None:intergenic
GTTGAATCATTCACCATGGG+TGG 0.522819 1_1:-18136205 Msa0012040:five_prime_UTR
AGGATTTGTTGATGGTATTG+AGG 0.529818 1_1:-18130936 Msa0012040:CDS
AAAGATGAAACAGGCCTTGG+CGG 0.530216 1_1:+18132561 None:intergenic
TGAAGAGAGGAAGACGGTGA+TGG 0.530326 1_1:+18136990 None:intergenic
ACAGAGAACCAACTATAGCT+TGG 0.531114 1_1:+18133719 None:intergenic
TCCTCTAAAGGAGCAACAGT+TGG 0.531444 1_1:+18131794 None:intergenic
AGAGGATGAAGAGAGGAAGA+CGG 0.532659 1_1:+18136984 None:intergenic
ACTTATCAATTTATGCATCA+CGG 0.534004 1_1:-18131424 Msa0012040:five_prime_UTR
CTCCGCGCCGGAGTATCATC+AGG 0.534808 1_1:-18136879 Msa0012040:intron
ACAATCCGAGGAGTTTATGA+TGG 0.535320 1_1:-18128059 Msa0012040:CDS
ATTTCCACCCGTGCAACGCA+CGG 0.536067 1_1:+18131219 None:intergenic
TGATGGTGTTATTTATCCAT+GGG 0.540816 1_1:-18130846 Msa0012040:CDS
GCCATCATTGTATACAACAT+AGG 0.543878 1_1:-18131688 Msa0012040:five_prime_UTR
AGGGAGGAAACTGGAAGTTA+GGG 0.546975 1_1:-18131621 Msa0012040:five_prime_UTR
TGTGTTTAGATCATCAACAT+AGG 0.548536 1_1:+18132260 None:intergenic
ATGAAGAAAGAAGGTAGAGG+AGG 0.552795 1_1:+18137050 None:intergenic
AGCCTGAAATTAACATGTGA+AGG 0.553857 1_1:+18133264 None:intergenic
GCAATGCGTGAAATTGGGAG+TGG 0.555445 1_1:-18130368 Msa0012040:CDS
TACAATAACGTAAGATATGA+CGG 0.558303 1_1:+18131481 None:intergenic
GAGCAACAGTTGGTTGAGCA+GGG 0.560914 1_1:+18131804 None:intergenic
AGCTTCCATCATAAACTCCT+CGG 0.564407 1_1:+18128054 None:intergenic
TACTGACTTGTGGCTAAAGA+TGG 0.565628 1_1:+18131736 None:intergenic
ATGAAACAGGCCTTGGCGGT+GGG 0.567151 1_1:+18132565 None:intergenic
ATACATGTACTTTGGCTGCA+TGG 0.567699 1_1:-18132403 Msa0012040:five_prime_UTR
AGAGAGCCTAAAGATGTCAA+AGG 0.568594 1_1:-18128559 Msa0012040:CDS
AATTCCGATGCGGTGGTCAA+CGG 0.570010 1_1:+18136909 None:intergenic
TTCAAAAGTATAGTGGATGG+AGG 0.571667 1_1:+18132749 None:intergenic
TTAATATAAGAAGGTAGCCA+AGG 0.576015 1_1:-18136128 Msa0012040:intron
TTTCCACCCGTGCAACGCAC+GGG 0.576395 1_1:+18131220 None:intergenic
TGGGGTTGAATCATTCACCA+TGG 0.577621 1_1:-18136209 Msa0012040:five_prime_UTR
TTTCTCATGCTACTGACTTG+TGG 0.578067 1_1:+18131726 None:intergenic
GGTGGTCTCAAAATTTAACT+TGG 0.578867 1_1:+18136930 None:intergenic
ATGGTTGAATCTAGACTCAA+AGG 0.582826 1_1:-18134232 Msa0012040:intron
GAGAGAACCTGATGATACTC+CGG 0.585981 1_1:+18136872 None:intergenic
GAATTCGCTCTCCTCCGCGC+CGG 0.586311 1_1:-18136891 Msa0012040:five_prime_UTR
AATCTACGACCGGAAGAATG+AGG 0.590394 1_1:-18135039 Msa0012040:five_prime_UTR
GACGCACACTTCTGGTACGA+AGG 0.593256 1_1:-18136725 Msa0012040:intron
GAAATGAAGAAAGAAGGTAG+AGG 0.595674 1_1:+18137047 None:intergenic
AGCCTAAAGATGTCAAAGGA+AGG 0.598867 1_1:-18128555 Msa0012040:intron
CAATGCGTGAAATTGGGAGT+GGG 0.601313 1_1:-18130367 Msa0012040:CDS
TGAGTAAGTGCATATGGTGA+TGG 0.602040 1_1:+18131830 None:intergenic
AAGTGGTGGTGGTTGTTACG+TGG 0.602264 1_1:+18137080 None:intergenic
GCGAAGGTGAAAACCTTCCA+AGG 0.605241 1_1:-18132189 Msa0012040:intron
AAACCTTGGAAAGTCTCCCA+TGG 0.606392 1_1:+18130830 None:intergenic
CGGTAGACTCATGTTAGTAG+AGG 0.607497 1_1:+18131501 None:intergenic
GTAAATTGCAGGAGCGTTTG+GGG 0.610811 1_1:-18136227 Msa0012040:intron
AGCAGCGCATACTTTGGTAG+CGG 0.611598 1_1:-18135015 Msa0012040:five_prime_UTR
AATTTCAAAAGTATAGTGGA+TGG 0.611612 1_1:+18132746 None:intergenic
CAACGACAAGATTATGACAA+TGG 0.612727 1_1:-18133143 Msa0012040:five_prime_UTR
TATGGCTATTCAGTTGGCGA+AGG 0.613853 1_1:-18132205 Msa0012040:five_prime_UTR
ACTGGAGCATATGATTCTGA+AGG 0.615429 1_1:-18128808 Msa0012040:CDS
CAATGACAAGATTATGACAA+TGG 0.616023 1_1:-18133065 Msa0012040:five_prime_UTR
ATATCCAACGGGGCAAACAT+GGG 0.618740 1_1:-18128837 Msa0012040:CDS
CAGGGCGAGTTGTCTGACTG+AGG 0.618929 1_1:+18130303 None:intergenic
TCCGATGCGGTGGTCAACGG+TGG 0.619227 1_1:+18136912 None:intergenic
ACTTCTTCTATATCACCCAT+AGG 0.621720 1_1:+18133758 None:intergenic
CTGCACCAGTTGTACGAGGG+TGG 0.622023 1_1:-18132012 Msa0012040:five_prime_UTR
AGTGGTGGTGGTTGTTACGT+GGG 0.623039 1_1:+18137081 None:intergenic
TTGAAGTTAAGAATATCCAA+CGG 0.624281 1_1:-18128849 Msa0012040:CDS
GATAACAAGAAACTAGAGGA+AGG 0.624914 1_1:-18131043 Msa0012040:intron
ACCACCGTTGACCACCGCAT+CGG 0.626301 1_1:-18136913 Msa0012040:five_prime_UTR
TGTGTCAGTATGTCTTATAG+TGG 0.626610 1_1:+18132712 None:intergenic
AGCGCATACTTTGGTAGCGG+AGG 0.630748 1_1:-18135012 Msa0012040:intron
AGGGCGAGTTGTCTGACTGA+GGG 0.633873 1_1:+18130304 None:intergenic
ATCAATTTATGCATCACGGG+AGG 0.636382 1_1:-18131420 Msa0012040:five_prime_UTR
ATATGTTAGGTGCTTAATAG+CGG 0.636725 1_1:-18133451 Msa0012040:intron
AAAACTGCACCAGTTGTACG+AGG 0.654821 1_1:-18132016 Msa0012040:five_prime_UTR
GAGAGCGAATTCCGATGCGG+TGG 0.658766 1_1:+18136902 None:intergenic
GAGCATATGATTCTGAAGGA+AGG 0.661835 1_1:-18128804 Msa0012040:intron
TCACTGCTTCTGTGAAACCA+AGG 0.668333 1_1:-18132608 Msa0012040:five_prime_UTR
ATATGATAACAAGAAACTAG+AGG 0.670209 1_1:-18131047 Msa0012040:CDS
CTTCAGAAAGAAACAATCCG+AGG 0.674979 1_1:-18128071 Msa0012040:CDS
CTGATGATACTCCGGCGCGG+AGG 0.690551 1_1:+18136880 None:intergenic
AATGCGTGAAATTGGGAGTG+GGG 0.694422 1_1:-18130366 Msa0012040:CDS
AAACTGCACCAGTTGTACGA+GGG 0.723082 1_1:-18132015 Msa0012040:five_prime_UTR
GAGGAGAGCGAATTCCGATG+CGG 0.737047 1_1:+18136899 None:intergenic
AACCTGATGATACTCCGGCG+CGG 0.787737 1_1:+18136877 None:intergenic
GAAGTTAAGAATATCCAACG+GGG 0.810368 1_1:-18128847 Msa0012040:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTAAAAATAATAATATTT+TGG - chr1_1:18135597-18135616 Msa0012040:intron 0.0%
!! TTACATACTTAATAAAATAA+TGG + chr1_1:18129523-18129542 None:intergenic 10.0%
!!! TATATTTTGAATGTTTTTTA+CGG - chr1_1:18130042-18130061 Msa0012040:intron 10.0%
!! AAATTTAATTATTAATAGGA+AGG + chr1_1:18130108-18130127 None:intergenic 10.0%
!! CAATTTAAATAAGTAAATAT+GGG + chr1_1:18131990-18132009 None:intergenic 10.0%
!! TCAATTTAAATAAGTAAATA+TGG + chr1_1:18131991-18132010 None:intergenic 10.0%
!! ACTTATTTAAATTGATTATA+TGG - chr1_1:18131996-18132015 Msa0012040:five_prime_UTR 10.0%
!! CTTATTTAAATTGATTATAT+GGG - chr1_1:18131997-18132016 Msa0012040:five_prime_UTR 10.0%
!! AATAATATATGAATAATAGA+TGG - chr1_1:18133420-18133439 Msa0012040:five_prime_UTR 10.0%
!! AAAACTAAAAAAATATTACT+TGG - chr1_1:18135203-18135222 Msa0012040:intron 10.0%
!! AAAGATTATATCTTATAATT+TGG - chr1_1:18135442-18135461 Msa0012040:intron 10.0%
!! GTATTAAAGAAAAAAATTAT+AGG + chr1_1:18136237-18136256 None:intergenic 10.0%
!! ATAAATCTGAAAATGAAAAA+TGG + chr1_1:18128300-18128319 None:intergenic 15.0%
!! CTCAAAATTCAAAAATATAA+TGG + chr1_1:18128327-18128346 None:intergenic 15.0%
!! TTGAAAAAGAAAAAAATTCT+TGG - chr1_1:18128424-18128443 Msa0012040:intron 15.0%
!! ATTTAGTAGTTAATATAAGA+AGG - chr1_1:18128851-18128870 Msa0012040:CDS 15.0%
!! TATTAAGTATGTAAATTATG+CGG - chr1_1:18129529-18129548 Msa0012040:intron 15.0%
!! TTAATTTACATACTTAAGAT+AGG + chr1_1:18129560-18129579 None:intergenic 15.0%
!! AAACAATAATGAAATATGAA+AGG + chr1_1:18130273-18130292 None:intergenic 15.0%
!! ATACAAAACAACAATAAAAA+AGG + chr1_1:18130677-18130696 None:intergenic 15.0%
!!! TTTTATTGTTGTTTTGTATT+AGG - chr1_1:18130678-18130697 Msa0012040:intron 15.0%
!!! TTTATTGTTGTTTTGTATTA+GGG - chr1_1:18130679-18130698 Msa0012040:intron 15.0%
!!! AAAACACAATTTATCAATTT+TGG + chr1_1:18132644-18132663 None:intergenic 15.0%
!!! TATTGTCATATATTTCTTTT+AGG - chr1_1:18133114-18133133 Msa0012040:five_prime_UTR 15.0%
!! ATAAATTGATAAGTAAAAAG+TGG + chr1_1:18133558-18133577 None:intergenic 15.0%
!! TTAAATTTCAATTCATATGT+AGG - chr1_1:18134032-18134051 Msa0012040:intron 15.0%
!!! AATAACACTTAAATTTTGTA+AGG - chr1_1:18134542-18134561 Msa0012040:intron 15.0%
!!! AACAATTTTGATATTTTTTC+TGG - chr1_1:18134942-18134961 Msa0012040:intron 15.0%
!! AATATATAGACCAAATATAT+TGG - chr1_1:18135171-18135190 Msa0012040:intron 15.0%
!! TATTGAATAACCAATATATT+TGG + chr1_1:18135184-18135203 None:intergenic 15.0%
!! GAAAAATAATTAATTGTTTG+TGG + chr1_1:18135794-18135813 None:intergenic 15.0%
!! TAAACAATTAATTGTGTATA+TGG - chr1_1:18136515-18136534 Msa0012040:intron 15.0%
!!! TTAAAAAATAGAAAGTGTTG+TGG + chr1_1:18127796-18127815 None:intergenic 20.0%
!!! GTTTTTGTAGTTTTAAATCT+TGG - chr1_1:18128211-18128230 Msa0012040:intron 20.0%
!! AAAAAGAAAAAAATTCTTGG+TGG - chr1_1:18128427-18128446 Msa0012040:intron 20.0%
!! CTCTATTTACAATTTAACAA+AGG + chr1_1:18128457-18128476 None:intergenic 20.0%
!! CTTTGTTAAATTGTAAATAG+AGG - chr1_1:18128455-18128474 Msa0012040:intron 20.0%
!!! TTAATTTGAAGAACAAAATC+TGG - chr1_1:18128505-18128524 Msa0012040:intron 20.0%
!! TAATTTGAAGAACAAAATCT+GGG - chr1_1:18128506-18128525 Msa0012040:intron 20.0%
!! AATCAATTTGTCAATGAATA+AGG - chr1_1:18128701-18128720 Msa0012040:intron 20.0%
!! AATTGAATTTCATAAACACA+TGG - chr1_1:18128736-18128755 Msa0012040:intron 20.0%
!! TCTATAAATATGAATTACCT+TGG + chr1_1:18128880-18128899 None:intergenic 20.0%
!!! ATTCATCCATTTTTATTTCT+TGG - chr1_1:18130004-18130023 Msa0012040:intron 20.0%
!!! TTCATCCATTTTTATTTCTT+GGG - chr1_1:18130005-18130024 Msa0012040:intron 20.0%
!! AAAAACCCAAGAAATAAAAA+TGG + chr1_1:18130013-18130032 None:intergenic 20.0%
!! CATAAATATCATAAGTAACT+TGG - chr1_1:18130412-18130431 Msa0012040:intron 20.0%
!! ATTAACAAACTCATAACTAT+AGG + chr1_1:18130517-18130536 None:intergenic 20.0%
!! TTTCATTCTATTTAGGTATA+TGG - chr1_1:18130565-18130584 Msa0012040:intron 20.0%
!!! TAGGTATATGGTATATTTTA+AGG - chr1_1:18130577-18130596 Msa0012040:intron 20.0%
!!! TTCTAGAAAAAATTGTCAAA+AGG + chr1_1:18130891-18130910 None:intergenic 20.0%
!!! TTTGACAATTTTTTCTAGAA+TGG - chr1_1:18130891-18130910 Msa0012040:CDS 20.0%
!! ATTAATGGCTAAGATTAAAT+GGG + chr1_1:18131176-18131195 None:intergenic 20.0%
!! TATTAATGGCTAAGATTAAA+TGG + chr1_1:18131177-18131196 None:intergenic 20.0%
!!! TATTATTTTGTAGATTCCTA+TGG - chr1_1:18131214-18131233 Msa0012040:five_prime_UTR 20.0%
!!! ATTATTTTGTAGATTCCTAT+GGG - chr1_1:18131215-18131234 Msa0012040:five_prime_UTR 20.0%
!!! ATTATTGATTAGTGAGTTTT+TGG - chr1_1:18131452-18131471 Msa0012040:five_prime_UTR 20.0%
!!! TTATATGGGTCTTAAATTTT+TGG - chr1_1:18132011-18132030 Msa0012040:five_prime_UTR 20.0%
!! AAGAAATCAACAAAATTTAG+TGG + chr1_1:18132141-18132160 None:intergenic 20.0%
!! GATTGACATTAAATCTATAT+GGG + chr1_1:18132317-18132336 None:intergenic 20.0%
!! AGATTGACATTAAATCTATA+TGG + chr1_1:18132318-18132337 None:intergenic 20.0%
!!! GGTTTATTTTTGAAATTTTG+GGG + chr1_1:18132487-18132506 None:intergenic 20.0%
!!! GGGTTTATTTTTGAAATTTT+GGG + chr1_1:18132488-18132507 None:intergenic 20.0%
!!! AGGGTTTATTTTTGAAATTT+TGG + chr1_1:18132489-18132508 None:intergenic 20.0%
!! TGAAATTTGCAAACATTAAT+TGG + chr1_1:18132563-18132582 None:intergenic 20.0%
!! AACAAATAGAATATGATTTG+TGG - chr1_1:18132888-18132907 Msa0012040:five_prime_UTR 20.0%
!!! TCCTTTAAAATCATGTAATT+TGG - chr1_1:18133331-18133350 Msa0012040:five_prime_UTR 20.0%
!!! ACCAAATTACATGATTTTAA+AGG + chr1_1:18133335-18133354 None:intergenic 20.0%
!! ATATCTTACGTTATTGTATA+AGG - chr1_1:18133512-18133531 Msa0012040:intron 20.0%
!! TTTAAAGGAATATGAAACTT+TGG + chr1_1:18133629-18133648 None:intergenic 20.0%
!!! CTTTTATGTAAAAAAAACCT+TGG + chr1_1:18134175-18134194 None:intergenic 20.0%
!!! CAAGGTTTTTTTTACATAAA+AGG - chr1_1:18134173-18134192 Msa0012040:intron 20.0%
!! AGTTATTAAGCATCATAATT+AGG - chr1_1:18134264-18134283 Msa0012040:intron 20.0%
!! TCTTAACATGTTAATTGTTA+TGG + chr1_1:18134497-18134516 None:intergenic 20.0%
!! ACTTGAAAAGATTAATACAT+TGG - chr1_1:18134519-18134538 Msa0012040:intron 20.0%
!!! AAATTTTGTAAGGAGAAAAA+AGG - chr1_1:18134552-18134571 Msa0012040:intron 20.0%
!!! ACATCTTATAATTTTCTTCT+CGG - chr1_1:18134726-18134745 Msa0012040:intron 20.0%
!!! TTTTTTTTTTCCTCTTGAAT+TGG - chr1_1:18134783-18134802 Msa0012040:intron 20.0%
!!! ATATTTTGGTCTCAAAATTT+TGG - chr1_1:18135611-18135630 Msa0012040:intron 20.0%
!!! CTCTCTTTTAAAATACTTTT+GGG + chr1_1:18135728-18135747 None:intergenic 20.0%
!!! ACTCTCTTTTAAAATACTTT+TGG + chr1_1:18135729-18135748 None:intergenic 20.0%
!!! TTCATAAGTCAAGTTTTTAT+TGG + chr1_1:18135939-18135958 None:intergenic 20.0%
!! TACTTATGCTATCATTTATA+TGG - chr1_1:18136074-18136093 Msa0012040:intron 20.0%
!! CATTTATTAAATGATGTATG+TGG + chr1_1:18136554-18136573 None:intergenic 20.0%
!! TTTCAAATTATTAGTTGTGT+CGG - chr1_1:18136713-18136732 Msa0012040:intron 20.0%
!! TTTACACAGTAATTTGATTA+CGG - chr1_1:18137111-18137130 Msa0012040:five_prime_UTR 20.0%
! TTGTGGATAAAAGAAAAAGT+AGG + chr1_1:18127779-18127798 None:intergenic 25.0%
! GACAAAAAATAAAAGAGGTT+TGG + chr1_1:18127821-18127840 None:intergenic 25.0%
! TCTTCATTTCCTATCAATTT+CGG - chr1_1:18127954-18127973 Msa0012040:three_prime_UTR 25.0%
! TATATGAACAGATCCAAAAT+GGG + chr1_1:18128167-18128186 None:intergenic 25.0%
! TTATATGAACAGATCCAAAA+TGG + chr1_1:18128168-18128187 None:intergenic 25.0%
! TGTTAAATTGTAAATAGAGG+TGG - chr1_1:18128458-18128477 Msa0012040:intron 25.0%
!!! TGTCAATGAATAAGGTATTT+TGG - chr1_1:18128709-18128728 Msa0012040:intron 25.0%
! ATTATGCAACTTCAAAATTG+AGG + chr1_1:18129164-18129183 None:intergenic 25.0%
! CTATTAGATTGTCAACAATA+TGG - chr1_1:18129186-18129205 Msa0012040:intron 25.0%
! ACATACAATGACTTATTGAA+AGG + chr1_1:18129278-18129297 None:intergenic 25.0%
! TGTAATCACAAAACATTAAC+CGG + chr1_1:18129319-18129338 None:intergenic 25.0%
!!! TTTAGTTTTCATTACGTCTT+TGG - chr1_1:18129423-18129442 Msa0012040:intron 25.0%
!! ATCTGACAAATCATCATTTT+AGG - chr1_1:18129477-18129496 Msa0012040:intron 25.0%
! ATTTACATACTTAAGATAGG+AGG + chr1_1:18129557-18129576 None:intergenic 25.0%
! TGTAAATTAAAATGTCCTGT+TGG - chr1_1:18129662-18129681 Msa0012040:intron 25.0%
! GAAATATTGTATCATGACAA+TGG + chr1_1:18129708-18129727 None:intergenic 25.0%
! AATTATTAATAGGAAGGTGA+AGG + chr1_1:18130102-18130121 None:intergenic 25.0%
! TCAGAATATGAAATAAGAGA+TGG + chr1_1:18130141-18130160 None:intergenic 25.0%
!! TCTCTTTCATTTTCTATTTG+TGG - chr1_1:18130232-18130251 Msa0012040:intron 25.0%
! CAAAAAAGAAAATTGAAAGC+TGG + chr1_1:18130456-18130475 None:intergenic 25.0%
! ATAACAAAGTGGAAACAATA+AGG + chr1_1:18130805-18130824 None:intergenic 25.0%
!!! TATTCATGTGTTACTTATCT+TGG + chr1_1:18130828-18130847 None:intergenic 25.0%
!!! TCCTACTCTTTTATTTTATG+TGG - chr1_1:18130992-18131011 Msa0012040:intron 25.0%
! TCCACATAAAATAAAAGAGT+AGG + chr1_1:18130996-18131015 None:intergenic 25.0%
!!! AGTATTAATCCCTTTGTTTT+GGG - chr1_1:18131015-18131034 Msa0012040:intron 25.0%
!!! ACTTATTGTGCATTGATTTT+CGG + chr1_1:18131045-18131064 None:intergenic 25.0%
! ATTTGTCAGAGAGATATTAA+TGG + chr1_1:18131191-18131210 None:intergenic 25.0%
!! TTCTCTGTTTTCAATGAAAT+TGG - chr1_1:18131284-18131303 Msa0012040:five_prime_UTR 25.0%
! TCAATGAAATTGGATTGATA+AGG - chr1_1:18131294-18131313 Msa0012040:five_prime_UTR 25.0%
! ACTAATAATTTCACCTAGTA+TGG + chr1_1:18132044-18132063 None:intergenic 25.0%
!! AATTTCAAAAGTATAGTGGA+TGG + chr1_1:18132245-18132264 None:intergenic 25.0%
!! TCTGAATTTCAAAAGTATAG+TGG + chr1_1:18132249-18132268 None:intergenic 25.0%
! GAAGATAGCTAGATATATTA+GGG + chr1_1:18132508-18132527 None:intergenic 25.0%
! TGAAGATAGCTAGATATATT+AGG + chr1_1:18132509-18132528 None:intergenic 25.0%
! ATTTCATGATACATGTACTT+TGG - chr1_1:18132577-18132596 Msa0012040:five_prime_UTR 25.0%
! TGATGATCTAAACACATATT+TGG - chr1_1:18132735-18132754 Msa0012040:five_prime_UTR 25.0%
!!! GTCATATATTTCTTTTAGGA+TGG - chr1_1:18133118-18133137 Msa0012040:five_prime_UTR 25.0%
! TACAATAACGTAAGATATGA+CGG + chr1_1:18133510-18133529 None:intergenic 25.0%
! ACTTATCAATTTATGCATCA+CGG - chr1_1:18133564-18133583 Msa0012040:intron 25.0%
!!! CATGTAACTCAATGTTTTAA+AGG + chr1_1:18133644-18133663 None:intergenic 25.0%
!!! AACTTATAAGTGTTGCTTTT+TGG + chr1_1:18133823-18133842 None:intergenic 25.0%
! GCAACACTTATAAGTTAATT+TGG - chr1_1:18133827-18133846 Msa0012040:intron 25.0%
!!! AAGTGCTTTTTAGTAGTATT+TGG + chr1_1:18133853-18133872 None:intergenic 25.0%
! TATTAGTGTACAAAGCAAAA+AGG + chr1_1:18133899-18133918 None:intergenic 25.0%
!! TTTTGCTTTGTACACTAATA+TGG - chr1_1:18133899-18133918 Msa0012040:intron 25.0%
!! TTCTTGTTATCATATGATAC+AGG + chr1_1:18133936-18133955 None:intergenic 25.0%
! ATATGATAACAAGAAACTAG+AGG - chr1_1:18133941-18133960 Msa0012040:intron 25.0%
! ATTACTTGAGCTAAACTATT+TGG + chr1_1:18134220-18134239 None:intergenic 25.0%
! TATGATGCTTAATAACTACT+TGG + chr1_1:18134261-18134280 None:intergenic 25.0%
! ATCATAATTAGGTCAAGTTT+AGG - chr1_1:18134275-18134294 Msa0012040:intron 25.0%
!! TTCTGTTTGCTACAATAAAT+AGG + chr1_1:18134339-18134358 None:intergenic 25.0%
! AAACAGAACCGAAATAAATT+CGG - chr1_1:18134351-18134370 Msa0012040:intron 25.0%
! TATTTGGCTGAAAATTGATT+TGG + chr1_1:18134377-18134396 None:intergenic 25.0%
! GAATGACACAATAAACTATT+TGG + chr1_1:18134393-18134412 None:intergenic 25.0%
! AGAAAAAAGGAATTTGATAG+TGG - chr1_1:18134565-18134584 Msa0012040:intron 25.0%
! CATAAAGAGATTTACTTACA+GGG + chr1_1:18134706-18134725 None:intergenic 25.0%
! TCATAAAGAGATTTACTTAC+AGG + chr1_1:18134707-18134726 None:intergenic 25.0%
!!! AAGGTGAAACTTTAATTTGT+AGG - chr1_1:18134989-18135008 Msa0012040:intron 25.0%
!! TCATCGAATCAATCTATTTT+TGG + chr1_1:18135293-18135312 None:intergenic 25.0%
! ACTCAAAAAAGATATTTGAG+CGG - chr1_1:18135312-18135331 Msa0012040:intron 25.0%
!! CTCTTTTACCTCTAATTTAT+AGG + chr1_1:18135534-18135553 None:intergenic 25.0%
! AAGTAATGTTCGTTTAAAAG+AGG + chr1_1:18135880-18135899 None:intergenic 25.0%
! ATTAATGTTATACGACCTTA+TGG + chr1_1:18135907-18135926 None:intergenic 25.0%
!!! GTCAAGTTTTTATTGGTTAA+GGG + chr1_1:18135932-18135951 None:intergenic 25.0%
!!! AGTCAAGTTTTTATTGGTTA+AGG + chr1_1:18135933-18135952 None:intergenic 25.0%
! TTAACTTCAATTGGAAAAAG+TGG + chr1_1:18136129-18136148 None:intergenic 25.0%
! TGGATATTCTTAACTTCAAT+TGG + chr1_1:18136138-18136157 None:intergenic 25.0%
! TTGAAGTTAAGAATATCCAA+CGG - chr1_1:18136139-18136158 Msa0012040:five_prime_UTR 25.0%
!! TCATCATATGTTAAAGCATT+TGG + chr1_1:18136384-18136403 None:intergenic 25.0%
! TAATTAATACTCGTATATGC+AGG - chr1_1:18136834-18136853 Msa0012040:intron 25.0%
! AATTAATACTCGTATATGCA+GGG - chr1_1:18136835-18136854 Msa0012040:intron 25.0%
! AGAATTACTTCATCCTAATT+CGG - chr1_1:18136989-18137008 Msa0012040:five_prime_UTR 25.0%
! TTCTATATCAACAAAGCAAA+AGG - chr1_1:18137028-18137047 Msa0012040:five_prime_UTR 25.0%
GTGAGGACAAAAAATAAAAG+AGG + chr1_1:18127826-18127845 None:intergenic 30.0%
TGATAGGAAATGAAGAAAGA+AGG + chr1_1:18127950-18127969 None:intergenic 30.0%
!!! GGTTTTATTATAGTGTGAAG+CGG + chr1_1:18127980-18127999 None:intergenic 30.0%
! AGATCCAAAATGGGTATTTT+CGG + chr1_1:18128158-18128177 None:intergenic 30.0%
GCATAATGAAAAAATGAGAC+AGG - chr1_1:18128241-18128260 Msa0012040:intron 30.0%
! AGTTTTCCAGAAAGATACAT+GGG + chr1_1:18128371-18128390 None:intergenic 30.0%
! TAGTTTTCCAGAAAGATACA+TGG + chr1_1:18128372-18128391 None:intergenic 30.0%
TTAATATAAGAAGGTAGCCA+AGG - chr1_1:18128860-18128879 Msa0012040:CDS 30.0%
! AGTTTGCTCTATGTAGTATT+TGG - chr1_1:18128950-18128969 Msa0012040:intron 30.0%
!! CTAGAGTTTTGTACACAATA+TGG - chr1_1:18129238-18129257 Msa0012040:intron 30.0%
TTTGCATTCTCTTAACTATC+CGG - chr1_1:18129297-18129316 Msa0012040:intron 30.0%
TAGTTCCTAAAATGAGGATT+TGG + chr1_1:18129454-18129473 None:intergenic 30.0%
! CAATCTTATTATGCGCATTT+TGG - chr1_1:18129630-18129649 Msa0012040:intron 30.0%
AAAATTGAAGCTAAACCAAC+AGG + chr1_1:18129680-18129699 None:intergenic 30.0%
TCTGAAAATCTGATCGAAAA+TGG + chr1_1:18129900-18129919 None:intergenic 30.0%
! CGTAGATTTTATCAAAAGAG+AGG + chr1_1:18129937-18129956 None:intergenic 30.0%
! CTTTTGATAAAATCTACGAC+CGG - chr1_1:18129939-18129958 Msa0012040:intron 30.0%
ATTTACCTTATCATAGCATG+TGG + chr1_1:18130078-18130097 None:intergenic 30.0%
TGCAGTTCATATAGAACAAT+TGG + chr1_1:18130314-18130333 None:intergenic 30.0%
AAGTAACTTGGATCTAGATA+TGG - chr1_1:18130424-18130443 Msa0012040:intron 30.0%
CTAACAAACTCATAACTCAA+AGG + chr1_1:18130489-18130508 None:intergenic 30.0%
TTCCAGCTTTCATTCTATTT+AGG - chr1_1:18130558-18130577 Msa0012040:intron 30.0%
TACCTAAATAGAATGAAAGC+TGG + chr1_1:18130563-18130582 None:intergenic 30.0%
AAAAGGACAGAAAAATTCAC+AGG + chr1_1:18130660-18130679 None:intergenic 30.0%
ACTTATCTTGGATAACAAAG+TGG + chr1_1:18130816-18130835 None:intergenic 30.0%
!! GAGTATTAATCCCTTTGTTT+TGG - chr1_1:18131014-18131033 Msa0012040:intron 30.0%
! AGAAAAACACAGAAGTGTAT+GGG + chr1_1:18131324-18131343 None:intergenic 30.0%
! AAGAAAAACACAGAAGTGTA+TGG + chr1_1:18131325-18131344 None:intergenic 30.0%
AAAGTTGCTCTCTATATGTT+AGG - chr1_1:18131524-18131543 Msa0012040:five_prime_UTR 30.0%
ATATGTTAGGTGCTTAATAG+CGG - chr1_1:18131537-18131556 Msa0012040:five_prime_UTR 30.0%
TAATAGCGGCAACTATTTAA+AGG - chr1_1:18131551-18131570 Msa0012040:five_prime_UTR 30.0%
ATCTCATAGCTTATCTGATT+TGG + chr1_1:18131605-18131624 None:intergenic 30.0%
TGTCTCTCTTTCATTATTTG+TGG - chr1_1:18131653-18131672 Msa0012040:five_prime_UTR 30.0%
! TTCAGGCTTTTGTACAAAAA+AGG - chr1_1:18131739-18131758 Msa0012040:five_prime_UTR 30.0%
CAATGACAAGATTATGACAA+TGG - chr1_1:18131923-18131942 Msa0012040:intron 30.0%
!!! TTTTGGAATAAGTCCATACT+AGG - chr1_1:18132028-18132047 Msa0012040:five_prime_UTR 30.0%
TCAATGTGCTATAATATCTC+TGG - chr1_1:18132104-18132123 Msa0012040:intron 30.0%
TGTGTTTAGATCATCAACAT+AGG + chr1_1:18132731-18132750 None:intergenic 30.0%
AGATACTGCTAATACTGTTA+TGG - chr1_1:18132765-18132784 Msa0012040:five_prime_UTR 30.0%
AAGCTACTACTCATATGAAT+AGG - chr1_1:18133020-18133039 Msa0012040:five_prime_UTR 30.0%
! AGGTAGTTTTTCGTTATACT+TGG - chr1_1:18133040-18133059 Msa0012040:five_prime_UTR 30.0%
TTACAGAGAAATTCCTCTAA+AGG + chr1_1:18133209-18133228 None:intergenic 30.0%
TAACACTCAAAGAGATATCA+AGG - chr1_1:18133226-18133245 Msa0012040:five_prime_UTR 30.0%
!!! CATGATTTTAAAGGAGTACT+CGG + chr1_1:18133326-18133345 None:intergenic 30.0%
!!! AATTTGGTTTTAGATGACTG+AGG - chr1_1:18133347-18133366 Msa0012040:five_prime_UTR 30.0%
!!! ATTTGGTTTTAGATGACTGA+GGG - chr1_1:18133348-18133367 Msa0012040:five_prime_UTR 30.0%
TGGAAGTTAGGGAAATTATA+TGG - chr1_1:18133378-18133397 Msa0012040:five_prime_UTR 30.0%
ATGTTAGTAGAGGAATTAGA+AGG + chr1_1:18133480-18133499 None:intergenic 30.0%
CTTATCAATTTATGCATCAC+GGG - chr1_1:18133565-18133584 Msa0012040:intron 30.0%
TTCATATTCCTCAAAAAGCA+TGG - chr1_1:18133701-18133720 Msa0012040:five_prime_UTR 30.0%
! TCATATTCCTCAAAAAGCAT+GGG - chr1_1:18133702-18133721 Msa0012040:five_prime_UTR 30.0%
GGGCTAGAAAAAATTTATTG+TGG + chr1_1:18133751-18133770 None:intergenic 30.0%
!! TCATATGTAGGATTTGTTGA+TGG - chr1_1:18134044-18134063 Msa0012040:intron 30.0%
!! ACATTTTCATGATCTGGAAT+GGG + chr1_1:18134086-18134105 None:intergenic 30.0%
! AACATTTTCATGATCTGGAA+TGG + chr1_1:18134087-18134106 None:intergenic 30.0%
! TGAAGAACATTTTCATGATC+TGG + chr1_1:18134092-18134111 None:intergenic 30.0%
!! TTCTTTGACTTGAATCATGA+TGG - chr1_1:18134125-18134144 Msa0012040:intron 30.0%
!! ATGATGGTGTTATTTATCCA+TGG - chr1_1:18134141-18134160 Msa0012040:intron 30.0%
!! TGATGGTGTTATTTATCCAT+GGG - chr1_1:18134142-18134161 Msa0012040:intron 30.0%
! TGATTTGGCCGAATTTATTT+CGG + chr1_1:18134362-18134381 None:intergenic 30.0%
! TTTTTCCTCTTGAATTGGAT+AGG - chr1_1:18134788-18134807 Msa0012040:intron 30.0%
CTATGACTTATGGACAATTA+AGG - chr1_1:18134970-18134989 Msa0012040:intron 30.0%
!!! TGGTTGAAACTGAAGTTTTT+TGG + chr1_1:18135273-18135292 None:intergenic 30.0%
TATTTACATAAGCGTCTTAG+TGG + chr1_1:18135577-18135596 None:intergenic 30.0%
! TTTTGGTCTCAAAATTTTGG+AGG - chr1_1:18135614-18135633 Msa0012040:intron 30.0%
!!! AAGACATAGCTGGTTTTTAA+AGG + chr1_1:18135666-18135685 None:intergenic 30.0%
AATATACTCAAAGACATAGC+TGG + chr1_1:18135676-18135695 None:intergenic 30.0%
!! GTTTTAGTAACCTTAGTCAT+GGG + chr1_1:18135755-18135774 None:intergenic 30.0%
!! GAACATTACTTTTGTCCATA+AGG - chr1_1:18135889-18135908 Msa0012040:intron 30.0%
! TTATATGGTTCTTGTTGTGT+AGG - chr1_1:18136089-18136108 Msa0012040:intron 30.0%
! TATATGGTTCTTGTTGTGTA+GGG - chr1_1:18136090-18136109 Msa0012040:intron 30.0%
TGAAGTTAAGAATATCCAAC+GGG - chr1_1:18136140-18136159 Msa0012040:five_prime_UTR 30.0%
! GTTTGTTGCATCTAAATTTG+AGG - chr1_1:18136329-18136348 Msa0012040:intron 30.0%
TTCAGTGTAATTACAAGTGT+CGG + chr1_1:18136680-18136699 None:intergenic 30.0%
CTTGTTTGAATTGCTGAAAA+AGG - chr1_1:18136955-18136974 Msa0012040:five_prime_UTR 30.0%
GAAATGAAGAAAGAAGGTAG+AGG + chr1_1:18127944-18127963 None:intergenic 35.0%
! TAATTGAGTGCGTTTTGTAG+AGG + chr1_1:18128025-18128044 None:intergenic 35.0%
!! GGTCTCAAAATTTAACTTGG+TGG + chr1_1:18128058-18128077 None:intergenic 35.0%
GGTGGTCTCAAAATTTAACT+TGG + chr1_1:18128061-18128080 None:intergenic 35.0%
! TCATCCGAAAATACCCATTT+TGG - chr1_1:18128151-18128170 Msa0012040:intron 35.0%
TCAAATCCCATGTATCTTTC+TGG - chr1_1:18128362-18128381 Msa0012040:intron 35.0%
! TAAATAGAGGTGGAGTTTTG+AGG - chr1_1:18128468-18128487 Msa0012040:intron 35.0%
TTTGAAGAACAAAATCTGGG+TGG - chr1_1:18128509-18128528 Msa0012040:intron 35.0%
!!! GGTGGTTTTTTGAACCTAAA+GGG - chr1_1:18128527-18128546 Msa0012040:intron 35.0%
AACACATGGATGTAAATTGC+AGG - chr1_1:18128750-18128769 Msa0012040:intron 35.0%
GCATGCTTACAAATACTACA+TGG + chr1_1:18128910-18128929 None:intergenic 35.0%
TGGCTACATATCAGTTTGAA+AGG - chr1_1:18129016-18129035 Msa0012040:intron 35.0%
GGCTACATATCAGTTTGAAA+GGG - chr1_1:18129017-18129036 Msa0012040:intron 35.0%
!! GACGTTTTCTTTTTGTTTCG+TGG - chr1_1:18129070-18129089 Msa0012040:intron 35.0%
! ATCTGCCAAATCCTCATTTT+AGG - chr1_1:18129446-18129465 Msa0012040:intron 35.0%
GATCAGTAGTTCCTAAAATG+AGG + chr1_1:18129460-18129479 None:intergenic 35.0%
GCTTCTCTCGTATTTAACAA+TGG + chr1_1:18129781-18129800 None:intergenic 35.0%
TAAATACGAGAGAAGCTACA+TGG - chr1_1:18129785-18129804 Msa0012040:intron 35.0%
GAAGACATGTAAAGGAAACA+TGG + chr1_1:18129851-18129870 None:intergenic 35.0%
GAGAGATTGAAGACATGTAA+AGG + chr1_1:18129859-18129878 None:intergenic 35.0%
AACAACCACATGCTATGATA+AGG - chr1_1:18130070-18130089 Msa0012040:intron 35.0%
TTGTTCAGATTCGCAACTTA+TGG - chr1_1:18130188-18130207 Msa0012040:intron 35.0%
TTCGCAACTTATGGTTTGAT+TGG - chr1_1:18130197-18130216 Msa0012040:intron 35.0%
TCGCAACTTATGGTTTGATT+GGG - chr1_1:18130198-18130217 Msa0012040:intron 35.0%
AACCTCACTACTTACAGATT+TGG - chr1_1:18130349-18130368 Msa0012040:CDS 35.0%
AACCAAATCTGTAAGTAGTG+AGG + chr1_1:18130354-18130373 None:intergenic 35.0%
ATGGTTGAATCTAGACTCAA+AGG - chr1_1:18130756-18130775 Msa0012040:intron 35.0%
TGAATCTAGACTCAAAGGTA+TGG - chr1_1:18130761-18130780 Msa0012040:intron 35.0%
!! GTATGGACAAGAGGTTTTAA+AGG - chr1_1:18130778-18130797 Msa0012040:intron 35.0%
TTCGGTTAACCCAAAACAAA+GGG + chr1_1:18131027-18131046 None:intergenic 35.0%
TTTCGGTTAACCCAAAACAA+AGG + chr1_1:18131028-18131047 None:intergenic 35.0%
CATTGAAACTACTCATGAGA+TGG - chr1_1:18131085-18131104 Msa0012040:exon 35.0%
ATTAAATGGGAATGTGGTGT+TGG + chr1_1:18131163-18131182 None:intergenic 35.0%
GCTAAGATTAAATGGGAATG+TGG + chr1_1:18131169-18131188 None:intergenic 35.0%
ACTTCTTCTATATCACCCAT+AGG + chr1_1:18131233-18131252 None:intergenic 35.0%
! AAAAACACAGAAGTGTATGG+GGG + chr1_1:18131322-18131341 None:intergenic 35.0%
! GAAAAACACAGAAGTGTATG+GGG + chr1_1:18131323-18131342 None:intergenic 35.0%
!! TAGAGAGCAACTTTTAAGAG+TGG + chr1_1:18131518-18131537 None:intergenic 35.0%
GTCCTTCACATGTTAATTTC+AGG - chr1_1:18131722-18131741 Msa0012040:five_prime_UTR 35.0%
AGCCTGAAATTAACATGTGA+AGG + chr1_1:18131727-18131746 None:intergenic 35.0%
CAACGACAAGATTATGACAA+TGG - chr1_1:18131845-18131864 Msa0012040:five_prime_UTR 35.0%
!! TTCAAAAGTATAGTGGATGG+AGG + chr1_1:18132242-18132261 None:intergenic 35.0%
TGTGTCAGTATGTCTTATAG+TGG + chr1_1:18132279-18132298 None:intergenic 35.0%
CATAAAAAGGAAAGTGACCT+TGG + chr1_1:18132400-18132419 None:intergenic 35.0%
GTTGAGTGAAAAGATGAAAC+AGG + chr1_1:18132439-18132458 None:intergenic 35.0%
TACTGTTATGGCTATTCAGT+TGG - chr1_1:18132777-18132796 Msa0012040:five_prime_UTR 35.0%
AGGATGAAAAATACCTTGGA+AGG + chr1_1:18132815-18132834 None:intergenic 35.0%
TGAGAGGATGAAAAATACCT+TGG + chr1_1:18132819-18132838 None:intergenic 35.0%
GCCATCATTGTATACAACAT+AGG - chr1_1:18133300-18133319 Msa0012040:five_prime_UTR 35.0%
GCCTATGTTGTATACAATGA+TGG + chr1_1:18133304-18133323 None:intergenic 35.0%
GATAACAAGAAACTAGAGGA+AGG - chr1_1:18133945-18133964 Msa0012040:intron 35.0%
!! AGGATTTGTTGATGGTATTG+AGG - chr1_1:18134052-18134071 Msa0012040:intron 35.0%
TGAGCTAAACTATTTGGTCA+TGG + chr1_1:18134214-18134233 None:intergenic 35.0%
!!! AGCTGCTATTTTCATCAATG+TGG - chr1_1:18134661-18134680 Msa0012040:intron 35.0%
CAAAATTGTTAGCTCAAACG+CGG + chr1_1:18134932-18134951 None:intergenic 35.0%
TCTGGTTGAACTATGACTTA+TGG - chr1_1:18134960-18134979 Msa0012040:intron 35.0%
TATTTGAGCGGTGAAGTAAA+AGG - chr1_1:18135324-18135343 Msa0012040:intron 35.0%
AAGAGAGTCTTGAGGATATA+TGG - chr1_1:18135549-18135568 Msa0012040:intron 35.0%
!! GGTTTTAGTAACCTTAGTCA+TGG + chr1_1:18135756-18135775 None:intergenic 35.0%
ACTAAGGTTACTAAAACCCT+AGG - chr1_1:18135758-18135777 Msa0012040:intron 35.0%
! TTGTGGATCTAAAACTCCTA+GGG + chr1_1:18135777-18135796 None:intergenic 35.0%
! TTTGTGGATCTAAAACTCCT+AGG + chr1_1:18135778-18135797 None:intergenic 35.0%
CAATTGGAAAAAGTGGAGAT+GGG + chr1_1:18136122-18136141 None:intergenic 35.0%
TCAATTGGAAAAAGTGGAGA+TGG + chr1_1:18136123-18136142 None:intergenic 35.0%
GAAGTTAAGAATATCCAACG+GGG - chr1_1:18136141-18136160 Msa0012040:five_prime_UTR 35.0%
AACCTTCCTTTGACATCTTT+AGG + chr1_1:18136438-18136457 None:intergenic 35.0%
CAAATTATTAGTTGTGTCGG+CGG - chr1_1:18136716-18136735 Msa0012040:intron 35.0%
! AAATTATTAGTTGTGTCGGC+GGG - chr1_1:18136717-18136736 Msa0012040:intron 35.0%
AAACTTGCCAAAGACAAGAA+TGG - chr1_1:18136890-18136909 Msa0012040:five_prime_UTR 35.0%
AAGCAAACCATTCTTGTCTT+TGG + chr1_1:18136900-18136919 None:intergenic 35.0%
TTACTTCATCCTAATTCGGT+TGG - chr1_1:18136993-18137012 Msa0012040:five_prime_UTR 35.0%
!! TCCTAATTCGGTTGGTAATT+AGG - chr1_1:18137001-18137020 Msa0012040:five_prime_UTR 35.0%
TCCTAATTACCAACCGAATT+AGG + chr1_1:18137005-18137024 None:intergenic 35.0%
TGTGTTTGAGAGAGAAAGTG+AGG + chr1_1:18127843-18127862 None:intergenic 40.0%
AAGAAGGTAGAGGAGGAAAA+AGG + chr1_1:18127934-18127953 None:intergenic 40.0%
ATGAAGAAAGAAGGTAGAGG+AGG + chr1_1:18127941-18127960 None:intergenic 40.0%
! GTTTTGTAGAGGATGAAGAG+AGG + chr1_1:18128014-18128033 None:intergenic 40.0%
!!! GGGTGGTTTTTTGAACCTAA+AGG - chr1_1:18128526-18128545 Msa0012040:intron 40.0%
!! ATGTAAATTGCAGGAGCGTT+TGG - chr1_1:18128759-18128778 Msa0012040:intron 40.0%
!! TGTAAATTGCAGGAGCGTTT+GGG - chr1_1:18128760-18128779 Msa0012040:intron 40.0%
! TCATTTATCGAGCTTTTCGC+TGG - chr1_1:18128996-18129015 Msa0012040:intron 40.0%
TTGTTTCGTGGCGTATTCAA+TGG - chr1_1:18129082-18129101 Msa0012040:intron 40.0%
!!! TTTTAGGACCACATGCACTT+TGG - chr1_1:18129493-18129512 Msa0012040:intron 40.0%
ATGGTTATCCAAAGTGCATG+TGG + chr1_1:18129504-18129523 None:intergenic 40.0%
!!! TCAGCAGTTTTGAGTTCTCA+CGG - chr1_1:18130730-18130749 Msa0012040:intron 40.0%
! GTGTTGGTCTATGCACAATT+TGG + chr1_1:18131147-18131166 None:intergenic 40.0%
TCTGCATTCCAAGCTATAGT+TGG - chr1_1:18131261-18131280 Msa0012040:five_prime_UTR 40.0%
ACAGAGAACCAACTATAGCT+TGG + chr1_1:18131272-18131291 None:intergenic 40.0%
TGAAAAGATGAAACAGGCCT+TGG + chr1_1:18132433-18132452 None:intergenic 40.0%
ATACATGTACTTTGGCTGCA+TGG - chr1_1:18132585-18132604 Msa0012040:five_prime_UTR 40.0%
CTAAACACATATTTGGCTGC+TGG - chr1_1:18132742-18132761 Msa0012040:five_prime_UTR 40.0%
!! GCACTTTACATAGCTTTGAG+AGG + chr1_1:18132835-18132854 None:intergenic 40.0%
GTAGTAGCTTCTGCACAAAT+TGG + chr1_1:18133010-18133029 None:intergenic 40.0%
TGAGTAAGTGCATATGGTGA+TGG + chr1_1:18133161-18133180 None:intergenic 40.0%
GGGATTTGAGTAAGTGCATA+TGG + chr1_1:18133167-18133186 None:intergenic 40.0%
!! TACTGACTTGTGGCTAAAGA+TGG + chr1_1:18133255-18133274 None:intergenic 40.0%
!! TTTCTCATGCTACTGACTTG+TGG + chr1_1:18133265-18133284 None:intergenic 40.0%
ATCAATTTATGCATCACGGG+AGG - chr1_1:18133568-18133587 Msa0012040:intron 40.0%
! TATTCCTCAAAAAGCATGGG+AGG - chr1_1:18133705-18133724 Msa0012040:five_prime_UTR 40.0%
ACAACAGCAATGCGTGAAAT+TGG - chr1_1:18134614-18134633 Msa0012040:intron 40.0%
CAACAGCAATGCGTGAAATT+GGG - chr1_1:18134615-18134634 Msa0012040:intron 40.0%
GTACACCTATCCAATTCAAG+AGG + chr1_1:18134796-18134815 None:intergenic 40.0%
CATCAAGATATCCTCATTCG+TGG + chr1_1:18135361-18135380 None:intergenic 40.0%
AGAGGTAAAAGAGAGTCTTG+AGG - chr1_1:18135541-18135560 Msa0012040:intron 40.0%
TGAAAATAGCTCAAGAGAGC+TGG + chr1_1:18135641-18135660 None:intergenic 40.0%
CCTATATGTTCAGTGAGAGT+TGG + chr1_1:18136001-18136020 None:intergenic 40.0%
CCAACTCTCACTGAACATAT+AGG - chr1_1:18135998-18136017 Msa0012040:intron 40.0%
ACTGGAGCATATGATTCTGA+AGG - chr1_1:18136180-18136199 Msa0012040:five_prime_UTR 40.0%
! GAGCATATGATTCTGAAGGA+AGG - chr1_1:18136184-18136203 Msa0012040:five_prime_UTR 40.0%
AGAGAGCCTAAAGATGTCAA+AGG - chr1_1:18136429-18136448 Msa0012040:intron 40.0%
AGCCTAAAGATGTCAAAGGA+AGG - chr1_1:18136433-18136452 Msa0012040:intron 40.0%
TAGTGACCAGCTATAAAGCA+CGG - chr1_1:18136602-18136621 Msa0012040:intron 40.0%
!! GTAATTACAAGTGTCGGTGT+CGG + chr1_1:18136674-18136693 None:intergenic 40.0%
TCATCTATGAAGCACGGATA+CGG + chr1_1:18136774-18136793 None:intergenic 40.0%
ATCCGTGCTTCATAGATGAT+CGG - chr1_1:18136775-18136794 Msa0012040:intron 40.0%
ATCCGATCATCTATGAAGCA+CGG + chr1_1:18136780-18136799 None:intergenic 40.0%
AATACTCGTATATGCAGGGT+TGG - chr1_1:18136839-18136858 Msa0012040:intron 40.0%
CTTCAGAAAGAAACAATCCG+AGG - chr1_1:18136917-18136936 Msa0012040:five_prime_UTR 40.0%
ACAATCCGAGGAGTTTATGA+TGG - chr1_1:18136929-18136948 Msa0012040:five_prime_UTR 40.0%
AGCTTCCATCATAAACTCCT+CGG + chr1_1:18136937-18136956 None:intergenic 40.0%
AGAGTGAGGAAAAGAGGAAG+TGG + chr1_1:18127873-18127892 None:intergenic 45.0%
AGAGAGAGAGTGAGGAAAAG+AGG + chr1_1:18127879-18127898 None:intergenic 45.0%
GTAGAGGAGGAAAAAGGAAG+TGG + chr1_1:18127928-18127947 None:intergenic 45.0%
AGAGGATGAAGAGAGGAAGA+CGG + chr1_1:18128007-18128026 None:intergenic 45.0%
GAGAGAACCTGATGATACTC+CGG + chr1_1:18128119-18128138 None:intergenic 45.0%
! GGGTATTTTCGGATGAGAGA+TGG + chr1_1:18128147-18128166 None:intergenic 45.0%
CTACACGCAAACTTCCCTTT+AGG + chr1_1:18128544-18128563 None:intergenic 45.0%
!! GTAAATTGCAGGAGCGTTTG+GGG - chr1_1:18128761-18128780 Msa0012040:intron 45.0%
TGGGGTTGAATCATTCACCA+TGG - chr1_1:18128779-18128798 Msa0012040:intron 45.0%
GGGGTTGAATCATTCACCAT+GGG - chr1_1:18128780-18128799 Msa0012040:intron 45.0%
GTTGAATCATTCACCATGGG+TGG - chr1_1:18128783-18128802 Msa0012040:intron 45.0%
TTCCTGCTAAAAACCACCCA+TGG + chr1_1:18128799-18128818 None:intergenic 45.0%
AATCTACGACCGGAAGAATG+AGG - chr1_1:18129949-18129968 Msa0012040:intron 45.0%
!! ATACTTTGGTAGCGGAGGTA+AGG - chr1_1:18129981-18130000 Msa0012040:intron 45.0%
!!! CAGCAGTTTTGAGTTCTCAC+GGG - chr1_1:18130731-18130750 Msa0012040:intron 45.0%
!!! TTTTGAGTTCTCACGGGACA+TGG - chr1_1:18130737-18130756 Msa0012040:intron 45.0%
! GACTCAAAGGTATGGACAAG+AGG - chr1_1:18130769-18130788 Msa0012040:intron 45.0%
TCACTGCTTCTGTGAAACCA+AGG - chr1_1:18132380-18132399 Msa0012040:five_prime_UTR 45.0%
TGGCGGTGGGATACATAAAA+AGG + chr1_1:18132413-18132432 None:intergenic 45.0%
! TTTTATGTATCCCACCGCCA+AGG - chr1_1:18132413-18132432 Msa0012040:five_prime_UTR 45.0%
AAAGATGAAACAGGCCTTGG+CGG + chr1_1:18132430-18132449 None:intergenic 45.0%
TATGGCTATTCAGTTGGCGA+AGG - chr1_1:18132783-18132802 Msa0012040:five_prime_UTR 45.0%
! TCGTACAACTGGTGCAGTTT+TGG + chr1_1:18132973-18132992 None:intergenic 45.0%
AAAACTGCACCAGTTGTACG+AGG - chr1_1:18132972-18132991 Msa0012040:five_prime_UTR 45.0%
AAACTGCACCAGTTGTACGA+GGG - chr1_1:18132973-18132992 Msa0012040:five_prime_UTR 45.0%
ACCAACTGTTGCTCCTTTAG+AGG - chr1_1:18133193-18133212 Msa0012040:five_prime_UTR 45.0%
! TCCTCTAAAGGAGCAACAGT+TGG + chr1_1:18133197-18133216 None:intergenic 45.0%
!!! TGGTTTTAGATGACTGAGGG+AGG - chr1_1:18133351-18133370 Msa0012040:five_prime_UTR 45.0%
AGGGAGGAAACTGGAAGTTA+GGG - chr1_1:18133367-18133386 Msa0012040:five_prime_UTR 45.0%
CGGTAGACTCATGTTAGTAG+AGG + chr1_1:18133490-18133509 None:intergenic 45.0%
!! ATAGCCTCCCATGCTTTTTG+AGG + chr1_1:18133712-18133731 None:intergenic 45.0%
TATCCATGGGAGACTTTCCA+AGG - chr1_1:18134155-18134174 Msa0012040:intron 45.0%
AAACCTTGGAAAGTCTCCCA+TGG + chr1_1:18134161-18134180 None:intergenic 45.0%
CAATGCGTGAAATTGGGAGT+GGG - chr1_1:18134621-18134640 Msa0012040:intron 45.0%
AATGCGTGAAATTGGGAGTG+GGG - chr1_1:18134622-18134641 Msa0012040:intron 45.0%
AAGTGCAAATGCCACGAATG+AGG - chr1_1:18135347-18135366 Msa0012040:intron 45.0%
AGTTATGTCACCTTGCGTGT+AGG - chr1_1:18135502-18135521 Msa0012040:intron 45.0%
GTTATGTCACCTTGCGTGTA+GGG - chr1_1:18135503-18135522 Msa0012040:intron 45.0%
GGGCGGTTCCTATAAATTAG+AGG - chr1_1:18135523-18135542 Msa0012040:intron 45.0%
AATATCCAACGGGGCAAACA+TGG - chr1_1:18136150-18136169 Msa0012040:five_prime_UTR 45.0%
ATATCCAACGGGGCAAACAT+GGG - chr1_1:18136151-18136170 Msa0012040:five_prime_UTR 45.0%
TATAAAGCACGGACACTCCT+CGG - chr1_1:18136613-18136632 Msa0012040:intron 45.0%
GTGCTTCATAGATGATCGGA+TGG - chr1_1:18136779-18136798 Msa0012040:intron 45.0%
!! GGGTTGGTAGCTTTGTTGAA+TGG - chr1_1:18136855-18136874 Msa0012040:intron 45.0%
!! AGATAAATTTAATTATTAAT+AGG + chr1_1:18130112-18130131 None:intergenic 5.0%
!!! TAAAAAATATATATTTTTAC+TGG + chr1_1:18136308-18136327 None:intergenic 5.0%
!!! AGTAAAAATATATATTTTTT+AGG - chr1_1:18136307-18136326 Msa0012040:intron 5.0%
GTGAGGAAAAGAGGAAGTGG+TGG + chr1_1:18127870-18127889 None:intergenic 50.0%
ACGAACAGAGAGAGAGAGTG+AGG + chr1_1:18127887-18127906 None:intergenic 50.0%
!! AGTGGTGGTGGTTGTTACGT+GGG + chr1_1:18127910-18127929 None:intergenic 50.0%
!! AAGTGGTGGTGGTTGTTACG+TGG + chr1_1:18127911-18127930 None:intergenic 50.0%
GAGGAAAAAGGAAGTGGTGG+TGG + chr1_1:18127922-18127941 None:intergenic 50.0%
GAGGAGGAAAAAGGAAGTGG+TGG + chr1_1:18127925-18127944 None:intergenic 50.0%
GTGAAGCGGCCGAAATTGAT+AGG + chr1_1:18127966-18127985 None:intergenic 50.0%
TGAAGAGAGGAAGACGGTGA+TGG + chr1_1:18128001-18128020 None:intergenic 50.0%
AATTCCGATGCGGTGGTCAA+CGG + chr1_1:18128082-18128101 None:intergenic 50.0%
!!! CACCATGGGTGGTTTTTAGC+AGG - chr1_1:18128794-18128813 Msa0012040:intron 50.0%
TGAGGAAGCAGCGCATACTT+TGG - chr1_1:18129967-18129986 Msa0012040:intron 50.0%
AGCAGCGCATACTTTGGTAG+CGG - chr1_1:18129973-18129992 Msa0012040:intron 50.0%
!! CGCACGAAACAGAGAGCATT+TGG + chr1_1:18131703-18131722 None:intergenic 50.0%
GCGAAGGTGAAAACCTTCCA+AGG - chr1_1:18132799-18132818 Msa0012040:five_prime_UTR 50.0%
GAAAACCACCCTCGTACAAC+TGG + chr1_1:18132984-18133003 None:intergenic 50.0%
GAGCAACAGTTGGTTGAGCA+GGG + chr1_1:18133187-18133206 None:intergenic 50.0%
AGATGACTGAGGGAGGAAAC+TGG - chr1_1:18133358-18133377 Msa0012040:five_prime_UTR 50.0%
GAGGGAGGAAACTGGAAGTT+AGG - chr1_1:18133366-18133385 Msa0012040:five_prime_UTR 50.0%
GCAATGCGTGAAATTGGGAG+TGG - chr1_1:18134620-18134639 Msa0012040:intron 50.0%
AGAGAGTCGTCCCATGACTA+AGG - chr1_1:18135742-18135761 Msa0012040:intron 50.0%
GAGTGTCCGTGCTTTATAGC+TGG + chr1_1:18136611-18136630 None:intergenic 50.0%
ACACGACATGTGTTCGACAC+CGG + chr1_1:18136651-18136670 None:intergenic 50.0%
ATGAAGCACGGATACGGACA+CGG + chr1_1:18136768-18136787 None:intergenic 50.0%
ATCGGATGGTGTACGATGCA+TGG - chr1_1:18136793-18136812 Msa0012040:intron 50.0%
GAGGAGAGCGAATTCCGATG+CGG + chr1_1:18128092-18128111 None:intergenic 55.0%
AACCTGATGATACTCCGGCG+CGG + chr1_1:18128114-18128133 None:intergenic 55.0%
TGAGACAGGACGCACACTTC+TGG - chr1_1:18128255-18128274 Msa0012040:intron 55.0%
GACGCACACTTCTGGTACGA+AGG - chr1_1:18128263-18128282 Msa0012040:intron 55.0%
GCGCTGCTTCCTCATTCTTC+CGG + chr1_1:18129961-18129980 None:intergenic 55.0%
!! AGCGCATACTTTGGTAGCGG+AGG - chr1_1:18129976-18129995 Msa0012040:intron 55.0%
ATGAAACAGGCCTTGGCGGT+GGG + chr1_1:18132426-18132445 None:intergenic 55.0%
GGAGCAACAGTTGGTTGAGC+AGG + chr1_1:18133188-18133207 None:intergenic 55.0%
! TTTCTAGCCCGTGCGTTGCA+CGG - chr1_1:18133761-18133780 Msa0012040:five_prime_UTR 55.0%
ATTTCCACCCGTGCAACGCA+CGG + chr1_1:18133772-18133791 None:intergenic 55.0%
AGGGCGAGTTGTCTGACTGA+GGG + chr1_1:18134687-18134706 None:intergenic 55.0%
ATGTCACCTTGCGTGTAGGG+CGG - chr1_1:18135506-18135525 Msa0012040:intron 55.0%
GGCAAACATGGGAGTGACAC+TGG - chr1_1:18136162-18136181 Msa0012040:five_prime_UTR 55.0%
CACGACATGTGTTCGACACC+GGG + chr1_1:18136650-18136669 None:intergenic 55.0%
ACCACCGTTGACCACCGCAT+CGG - chr1_1:18128075-18128094 Msa0012040:CDS 60.0%
GAGAGCGAATTCCGATGCGG+TGG + chr1_1:18128089-18128108 None:intergenic 60.0%
GATGAAACAGGCCTTGGCGG+TGG + chr1_1:18132427-18132446 None:intergenic 60.0%
CTGCACCAGTTGTACGAGGG+TGG - chr1_1:18132976-18132995 Msa0012040:five_prime_UTR 60.0%
TTCTAGCCCGTGCGTTGCAC+GGG - chr1_1:18133762-18133781 Msa0012040:five_prime_UTR 60.0%
TTTCCACCCGTGCAACGCAC+GGG + chr1_1:18133771-18133790 None:intergenic 60.0%
CAGGGCGAGTTGTCTGACTG+AGG + chr1_1:18134688-18134707 None:intergenic 60.0%
TAGGAACCGCCCTACACGCA+AGG + chr1_1:18135515-18135534 None:intergenic 60.0%
CACTCCCATGTTTGCCCCGT+TGG + chr1_1:18136158-18136177 None:intergenic 60.0%
ACGGATACGGACACGGACAC+TGG + chr1_1:18136761-18136780 None:intergenic 60.0%
TCCGATGCGGTGGTCAACGG+TGG + chr1_1:18128079-18128098 None:intergenic 65.0%
GAATTCGCTCTCCTCCGCGC+CGG - chr1_1:18128097-18128116 Msa0012040:CDS 65.0%
CTGATGATACTCCGGCGCGG+AGG + chr1_1:18128111-18128130 None:intergenic 65.0%
! CTCCGCGCCGGAGTATCATC+AGG - chr1_1:18128109-18128128 Msa0012040:CDS 65.0%
AGCACGGACACTCCTCGGAC+TGG - chr1_1:18136618-18136637 Msa0012040:intron 65.0%
GCACGGACACTCCTCGGACT+GGG - chr1_1:18136619-18136638 Msa0012040:intron 65.0%
TAGCCCGTGCGTTGCACGGG+TGG - chr1_1:18133765-18133784 Msa0012040:intron 70.0%
! TCCTCGGACTGGGCGTGTCC+CGG - chr1_1:18136629-18136648 Msa0012040:intron 70.0%
ACCGGGACACGCCCAGTCCG+AGG + chr1_1:18136633-18136652 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 18127776 18137234 18127776 ID=Msa0012040;Name=Msa0012040
chr1_1 mRNA 18127776 18137234 18127776 ID=Msa0012040-mRNA-1;Parent=Msa0012040;Name=Msa0012040-mRNA-1;_AED=0.21;_eAED=0.21;_QI=2915|1|1|1|0.57|0.53|15|228|209
chr1_1 exon 18127776 18128154 18127776 ID=Msa0012040-mRNA-1:exon:6651;Parent=Msa0012040-mRNA-1
chr1_1 exon 18128556 18128681 18128556 ID=Msa0012040-mRNA-1:exon:6650;Parent=Msa0012040-mRNA-1
chr1_1 exon 18128805 18128899 18128805 ID=Msa0012040-mRNA-1:exon:6649;Parent=Msa0012040-mRNA-1
chr1_1 exon 18130304 18130389 18130304 ID=Msa0012040-mRNA-1:exon:6648;Parent=Msa0012040-mRNA-1
chr1_1 exon 18130834 18130956 18130834 ID=Msa0012040-mRNA-1:exon:6647;Parent=Msa0012040-mRNA-1
chr1_1 exon 18131044 18131874 18131044 ID=Msa0012040-mRNA-1:exon:6646;Parent=Msa0012040-mRNA-1
chr1_1 exon 18131969 18132053 18131969 ID=Msa0012040-mRNA-1:exon:6645;Parent=Msa0012040-mRNA-1
chr1_1 exon 18132190 18133464 18132190 ID=Msa0012040-mRNA-1:exon:6644;Parent=Msa0012040-mRNA-1
chr1_1 exon 18133695 18133783 18133695 ID=Msa0012040-mRNA-1:exon:6643;Parent=Msa0012040-mRNA-1
chr1_1 exon 18134233 18134276 18134233 ID=Msa0012040-mRNA-1:exon:6642;Parent=Msa0012040-mRNA-1
chr1_1 exon 18134791 18134814 18134791 ID=Msa0012040-mRNA-1:exon:6641;Parent=Msa0012040-mRNA-1
chr1_1 exon 18135013 18135099 18135013 ID=Msa0012040-mRNA-1:exon:6640;Parent=Msa0012040-mRNA-1
chr1_1 exon 18136129 18136238 18136129 ID=Msa0012040-mRNA-1:exon:6639;Parent=Msa0012040-mRNA-1
chr1_1 exon 18136726 18136789 18136726 ID=Msa0012040-mRNA-1:exon:6638;Parent=Msa0012040-mRNA-1
chr1_1 exon 18136880 18137234 18136880 ID=Msa0012040-mRNA-1:exon:6637;Parent=Msa0012040-mRNA-1
chr1_1 five_prime_UTR 18136880 18137234 18136880 ID=Msa0012040-mRNA-1:five_prime_utr;Parent=Msa0012040-mRNA-1
chr1_1 five_prime_UTR 18136726 18136789 18136726 ID=Msa0012040-mRNA-1:five_prime_utr;Parent=Msa0012040-mRNA-1
chr1_1 five_prime_UTR 18136129 18136238 18136129 ID=Msa0012040-mRNA-1:five_prime_utr;Parent=Msa0012040-mRNA-1
chr1_1 five_prime_UTR 18135013 18135099 18135013 ID=Msa0012040-mRNA-1:five_prime_utr;Parent=Msa0012040-mRNA-1
chr1_1 five_prime_UTR 18134791 18134814 18134791 ID=Msa0012040-mRNA-1:five_prime_utr;Parent=Msa0012040-mRNA-1
chr1_1 five_prime_UTR 18134233 18134276 18134233 ID=Msa0012040-mRNA-1:five_prime_utr;Parent=Msa0012040-mRNA-1
chr1_1 five_prime_UTR 18133695 18133783 18133695 ID=Msa0012040-mRNA-1:five_prime_utr;Parent=Msa0012040-mRNA-1
chr1_1 five_prime_UTR 18132190 18133464 18132190 ID=Msa0012040-mRNA-1:five_prime_utr;Parent=Msa0012040-mRNA-1
chr1_1 five_prime_UTR 18131969 18132053 18131969 ID=Msa0012040-mRNA-1:five_prime_utr;Parent=Msa0012040-mRNA-1
chr1_1 five_prime_UTR 18131093 18131874 18131093 ID=Msa0012040-mRNA-1:five_prime_utr;Parent=Msa0012040-mRNA-1
chr1_1 CDS 18131044 18131092 18131044 ID=Msa0012040-mRNA-1:cds;Parent=Msa0012040-mRNA-1
chr1_1 CDS 18130834 18130956 18130834 ID=Msa0012040-mRNA-1:cds;Parent=Msa0012040-mRNA-1
chr1_1 CDS 18130304 18130389 18130304 ID=Msa0012040-mRNA-1:cds;Parent=Msa0012040-mRNA-1
chr1_1 CDS 18128805 18128899 18128805 ID=Msa0012040-mRNA-1:cds;Parent=Msa0012040-mRNA-1
chr1_1 CDS 18128556 18128681 18128556 ID=Msa0012040-mRNA-1:cds;Parent=Msa0012040-mRNA-1
chr1_1 CDS 18128004 18128154 18128004 ID=Msa0012040-mRNA-1:cds;Parent=Msa0012040-mRNA-1
chr1_1 three_prime_UTR 18127776 18128003 18127776 ID=Msa0012040-mRNA-1:three_prime_utr;Parent=Msa0012040-mRNA-1
Gene Sequence

>Msa0012040

ATGGCATCTTCTTCTCCTGTATCATATGATAACAAGAAACTAGAGGAAGGATTTGTTGATGGTATTGAGGAGAAGAAACCCATTCCAGATCATGAAAATGTTCTTCAGAAACATGCTGCTTTCTTTGACTTGAATCATGATGGTGTTATTTATCCATGGGAGACTTTCCAAGCAATGCGTGAAATTGGGAGTGGGGTGTTGTTATCAACTGCAGCTGCTATTTTCATCAATGTGGCCCTCAGTCAGACAACTCGCCCTGGAAAGTTCCCATCTCCACTTTTTCCAATTGAAGTTAAGAATATCCAACGGGGCAAACATGGGAGTGACACTGGAGCATATGATTCTGAAGGAAGGTTTGTTGCATCTAAATTTGAGGAAATCTTCATCAAACATGCACATACACATCCAAATGCTTTAACATATGATGAGCTAAATGAGTTGATAAAGACAAACAGAGAGCCTAAAGATGTCAAAGGAAGGGTTGGTAGCTTTGTTGAATGGAAAATTCTTTACAAACTTGCCAAAGACAAGAATGGTTTGCTTCAGAAAGAAACAATCCGAGGAGTTTATGATGGAAGCTTGTTTGAATTGCTGAAAAAGGAACATACAAAAAGAATTACTTCATCCTAA
Protein sequence

>Msa0012040

MASSSPVSYDNKKLEEGFVDGIEEKKPIPDHENVLQKHAAFFDLNHDGVIYPWETFQAMREIGSGVLLSTAAAIFINVALSQTTRPGKFPSPLFPIEVKNIQRGKHGSDTGAYDSEGRFVASKFEEIFIKHAHTHPNALTYDELNELIKTNREPKDVKGRVGSFVEWKILYKLAKDKNGLLQKETIRGVYDGSLFELLKKEHTKRITSS*