Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1407060 | XP_003597636.1 | 100.000 | 205 | 0 | 0 | 1 | 205 | 1 | 205 | 2.41e-146 | 415 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1407060 | sp|Q8LE58|CHM1A_ARATH | 87.805 | 205 | 23 | 1 | 1 | 205 | 1 | 203 | 1.07e-129 | 366 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1407060 | B7FHV8 | 100.000 | 205 | 0 | 0 | 1 | 205 | 1 | 205 | 1.15e-146 | 415 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006110 | Msa1407060 | 0.811380 | 7.207103e-51 | -8.615850e-47 |
| Msa0015390 | Msa1407060 | 0.834315 | 3.218661e-56 | -8.615850e-47 |
| Msa0026910 | Msa1407060 | 0.811176 | 7.980534e-51 | -8.615850e-47 |
| Msa0036140 | Msa1407060 | 0.800913 | 1.153223e-48 | -8.615850e-47 |
| Msa0068740 | Msa1407060 | -0.807961 | 3.914563e-50 | -8.615850e-47 |
| Msa0075880 | Msa1407060 | 0.810996 | 8.732081e-51 | -8.615850e-47 |
| Msa0079070 | Msa1407060 | 0.820956 | 5.215771e-53 | -8.615850e-47 |
| Msa0095560 | Msa1407060 | 0.800562 | 1.359441e-48 | -8.615850e-47 |
| Msa0105260 | Msa1407060 | 0.810423 | 1.161165e-50 | -8.615850e-47 |
| Msa1353470 | Msa1407060 | 0.810007 | 1.427452e-50 | -8.615850e-47 |
| Msa1403890 | Msa1407060 | 0.800168 | 1.635825e-48 | -8.615850e-47 |
| Msa1407060 | Msa1420820 | 0.832452 | 9.380279e-56 | -8.615850e-47 |
| Msa1407060 | Msa1426710 | 0.815705 | 8.061953e-52 | -8.615850e-47 |
| Msa1407060 | Msa1466540 | 0.805376 | 1.375748e-49 | -8.615850e-47 |
| Msa0607910 | Msa1407060 | 0.818306 | 2.100166e-52 | -8.615850e-47 |
| Msa0634700 | Msa1407060 | 0.808434 | 3.103332e-50 | -8.615850e-47 |
| Msa0652940 | Msa1407060 | 0.802691 | 4.974042e-49 | -8.615850e-47 |
| Msa0663800 | Msa1407060 | 0.800909 | 1.155263e-48 | -8.615850e-47 |
| Msa0672570 | Msa1407060 | 0.817134 | 3.860502e-52 | -8.615850e-47 |
| Msa0673460 | Msa1407060 | 0.826685 | 2.368708e-54 | -8.615850e-47 |
| Msa0697040 | Msa1407060 | 0.804348 | 2.255838e-49 | -8.615850e-47 |
| Msa0740510 | Msa1407060 | 0.818927 | 1.517889e-52 | -8.615850e-47 |
| Msa0764960 | Msa1407060 | 0.801849 | 7.414463e-49 | -8.615850e-47 |
| Msa0775190 | Msa1407060 | 0.828224 | 1.012653e-54 | -8.615850e-47 |
| Msa0796980 | Msa1407060 | 0.800840 | 1.193524e-48 | -8.615850e-47 |
| Msa0797770 | Msa1407060 | 0.802176 | 6.352554e-49 | -8.615850e-47 |
| Msa0800210 | Msa1407060 | 0.814647 | 1.384889e-51 | -8.615850e-47 |
| Msa0802830 | Msa1407060 | 0.822549 | 2.232632e-53 | -8.615850e-47 |
| Msa0820770 | Msa1407060 | 0.830812 | 2.379013e-55 | -8.615850e-47 |
| Msa0820850 | Msa1407060 | 0.835319 | 1.798062e-56 | -8.615850e-47 |
| Msa0831850 | Msa1407060 | 0.811317 | 7.437560e-51 | -8.615850e-47 |
| Msa0832340 | Msa1407060 | 0.833800 | 4.330375e-56 | -8.615850e-47 |
| Msa0835230 | Msa1407060 | 0.801701 | 7.952533e-49 | -8.615850e-47 |
| Msa0835800 | Msa1407060 | 0.802375 | 5.780740e-49 | -8.615850e-47 |
| Msa0131770 | Msa1407060 | 0.819811 | 9.545399e-53 | -8.615850e-47 |
| Msa0138020 | Msa1407060 | 0.808411 | 3.137792e-50 | -8.615850e-47 |
| Msa0145190 | Msa1407060 | 0.820914 | 5.332969e-53 | -8.615850e-47 |
| Msa0171120 | Msa1407060 | 0.801227 | 9.943526e-49 | -8.615850e-47 |
| Msa0194440 | Msa1407060 | 0.809473 | 1.859595e-50 | -8.615850e-47 |
| Msa0201070 | Msa1407060 | 0.828689 | 7.820036e-55 | -8.615850e-47 |
| Msa0204840 | Msa1407060 | 0.807740 | 4.360609e-50 | -8.615850e-47 |
| Msa0206010 | Msa1407060 | 0.811942 | 5.440006e-51 | -8.615850e-47 |
| Msa0210450 | Msa1407060 | 0.817804 | 2.727140e-52 | -8.615850e-47 |
| Msa0218370 | Msa1407060 | 0.813493 | 2.488891e-51 | -8.615850e-47 |
| Msa0218470 | Msa1407060 | 0.817298 | 3.545536e-52 | -8.615850e-47 |
| Msa0218580 | Msa1407060 | 0.813335 | 2.697010e-51 | -8.615850e-47 |
| Msa0220740 | Msa1407060 | 0.813465 | 2.524244e-51 | -8.615850e-47 |
| Msa0223910 | Msa1407060 | 0.822415 | 2.397724e-53 | -8.615850e-47 |
| Msa0236420 | Msa1407060 | 0.819922 | 9.006436e-53 | -8.615850e-47 |
| Msa1242300 | Msa1407060 | 0.800801 | 1.215164e-48 | -8.615850e-47 |
| Msa1282580 | Msa1407060 | -0.803249 | 3.814992e-49 | -8.615850e-47 |
| Msa1284680 | Msa1407060 | 0.818744 | 1.671060e-52 | -8.615850e-47 |
| Msa1305810 | Msa1407060 | 0.814501 | 1.492061e-51 | -8.615850e-47 |
| Msa1306850 | Msa1407060 | 0.809295 | 2.031124e-50 | -8.615850e-47 |
| Msa1325860 | Msa1407060 | -0.827628 | 1.408371e-54 | -8.615850e-47 |
| Msa1331320 | Msa1407060 | 0.809840 | 1.551159e-50 | -8.615850e-47 |
| Msa0379640 | Msa1407060 | 0.803341 | 3.651368e-49 | -8.615850e-47 |
| Msa0381610 | Msa1407060 | -0.808400 | 3.155311e-50 | -8.615850e-47 |
| Msa0390400 | Msa1407060 | -0.819697 | 1.013414e-52 | -8.615850e-47 |
| Msa0394470 | Msa1407060 | 0.802025 | 6.823039e-49 | -8.615850e-47 |
| Msa0411390 | Msa1407060 | 0.803186 | 3.930748e-49 | -8.615850e-47 |
| Msa0417330 | Msa1407060 | 0.813478 | 2.508008e-51 | -8.615850e-47 |
| Msa0433410 | Msa1407060 | -0.822446 | 2.359269e-53 | -8.615850e-47 |
| Msa0434180 | Msa1407060 | 0.802172 | 6.363173e-49 | -8.615850e-47 |
| Msa0453000 | Msa1407060 | 0.809014 | 2.332382e-50 | -8.615850e-47 |
| Msa0453350 | Msa1407060 | 0.803711 | 3.059708e-49 | -8.615850e-47 |
| Msa0455760 | Msa1407060 | 0.830495 | 2.844380e-55 | -8.615850e-47 |
| Msa0469940 | Msa1407060 | -0.804896 | 1.733162e-49 | -8.615850e-47 |
| Msa0471900 | Msa1407060 | 0.800124 | 1.669704e-48 | -8.615850e-47 |
| Msa0980880 | Msa1407060 | 0.807051 | 6.104168e-50 | -8.615850e-47 |
| Msa1004010 | Msa1407060 | 0.806506 | 7.959190e-50 | -8.615850e-47 |
| Msa1017350 | Msa1407060 | 0.810007 | 1.427584e-50 | -8.615850e-47 |
| Msa1023950 | Msa1407060 | 0.806894 | 6.589049e-50 | -8.615850e-47 |
| Msa1075220 | Msa1407060 | -0.800512 | 1.391967e-48 | -8.615850e-47 |
| Msa1075650 | Msa1407060 | 0.803666 | 3.126726e-49 | -8.615850e-47 |
| Msa1077340 | Msa1407060 | 0.802039 | 6.779252e-49 | -8.615850e-47 |
| Msa1088950 | Msa1407060 | 0.996714 | 3.341367e-231 | -8.615850e-47 |
| Msa0265670 | Msa1407060 | 0.803479 | 3.417986e-49 | -8.615850e-47 |
| Msa0270960 | Msa1407060 | 0.821220 | 4.533061e-53 | -8.615850e-47 |
| Msa0281930 | Msa1407060 | 0.816067 | 6.692413e-52 | -8.615850e-47 |
| Msa0286670 | Msa1407060 | 0.804614 | 1.984960e-49 | -8.615850e-47 |
| Msa0287410 | Msa1407060 | 0.807677 | 4.497855e-50 | -8.615850e-47 |
| Msa0288120 | Msa1407060 | 0.809267 | 2.059240e-50 | -8.615850e-47 |
| Msa0306210 | Msa1407060 | -0.836719 | 7.935946e-57 | -8.615850e-47 |
| Msa0317010 | Msa1407060 | 0.802690 | 4.978543e-49 | -8.615850e-47 |
| Msa0326110 | Msa1407060 | 0.825254 | 5.181428e-54 | -8.615850e-47 |
| Msa0340450 | Msa1407060 | 0.812567 | 3.972757e-51 | -8.615850e-47 |
| Msa0344690 | Msa1407060 | -0.809003 | 2.344904e-50 | -8.615850e-47 |
| Msa0363790 | Msa1407060 | 0.833021 | 6.773067e-56 | -8.615850e-47 |
| Msa1121480 | Msa1407060 | 0.810054 | 1.394621e-50 | -8.615850e-47 |
| Msa1121490 | Msa1407060 | 0.813704 | 2.237446e-51 | -8.615850e-47 |
| Msa1147740 | Msa1407060 | 0.806316 | 8.729038e-50 | -8.615850e-47 |
| Msa1162550 | Msa1407060 | -0.803157 | 3.985856e-49 | -8.615850e-47 |
| Msa1174040 | Msa1407060 | 0.807075 | 6.033584e-50 | -8.615850e-47 |
| Msa1178110 | Msa1407060 | 0.802414 | 5.673489e-49 | -8.615850e-47 |
| Msa1184840 | Msa1407060 | 0.814269 | 1.678869e-51 | -8.615850e-47 |
| Msa1207310 | Msa1407060 | 0.802350 | 5.850210e-49 | -8.615850e-47 |
| Msa0485490 | Msa1407060 | 0.821818 | 3.297680e-53 | -8.615850e-47 |
| Msa0516440 | Msa1407060 | 0.822242 | 2.629899e-53 | -8.615850e-47 |
| Msa0535630 | Msa1407060 | 0.801641 | 8.181477e-49 | -8.615850e-47 |
| Msa0538600 | Msa1407060 | 0.802306 | 5.971274e-49 | -8.615850e-47 |
| Msa0538930 | Msa1407060 | 0.803286 | 3.748918e-49 | -8.615850e-47 |
| Msa0547890 | Msa1407060 | 0.811924 | 5.489361e-51 | -8.615850e-47 |
| Msa0549910 | Msa1407060 | 0.806493 | 8.007890e-50 | -8.615850e-47 |
| Msa0559500 | Msa1407060 | 0.813217 | 2.862105e-51 | -8.615850e-47 |
| Msa0842710 | Msa1407060 | 0.810524 | 1.104306e-50 | -8.615850e-47 |
| Msa0861090 | Msa1407060 | 0.826568 | 2.525311e-54 | -8.615850e-47 |
| Msa0861130 | Msa1407060 | 0.835859 | 1.313022e-56 | -8.615850e-47 |
| Msa0876580 | Msa1407060 | 0.818247 | 2.165261e-52 | -8.615850e-47 |
| Msa0894710 | Msa1407060 | 0.804838 | 1.782077e-49 | -8.615850e-47 |
| Msa0925870 | Msa1407060 | 0.818783 | 1.636877e-52 | -8.615850e-47 |
| Msa0927380 | Msa1407060 | 0.822593 | 2.180081e-53 | -8.615850e-47 |
| Msa0932830 | Msa1407060 | 0.822279 | 2.578892e-53 | -8.615850e-47 |
| Msa0933100 | Msa1407060 | 0.808589 | 2.875512e-50 | -8.615850e-47 |
| Msa0936390 | Msa1407060 | 0.821742 | 3.435446e-53 | -8.615850e-47 |
| Msa0958920 | Msa1407060 | 0.813571 | 2.392391e-51 | -8.615850e-47 |
| Msa0969520 | Msa1407060 | 0.831951 | 1.247134e-55 | -8.615850e-47 |
| Msa0976670 | Msa1407060 | 0.800284 | 1.549067e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1407060 | MtrunA17_Chr2g0330571 | 100.000 | 205 | 0 | 0 | 1 | 205 | 1 | 205 | 2.21e-150 | 415 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1407060 | AT1G17730.1 | 87.805 | 205 | 23 | 1 | 1 | 205 | 1 | 203 | 1.09e-130 | 366 |
| Msa1407060 | AT1G73030.1 | 88.293 | 205 | 22 | 1 | 1 | 205 | 1 | 203 | 8.84e-119 | 335 |
| Msa1407060 | AT2G06530.2 | 27.273 | 165 | 116 | 2 | 19 | 180 | 7 | 170 | 6.62e-12 | 62.4 |
| Msa1407060 | AT2G06530.1 | 27.273 | 165 | 116 | 2 | 19 | 180 | 28 | 191 | 8.73e-12 | 62.4 |
Find 56 sgRNAs with CRISPR-Local
Find 61 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAACAGGTGGCGGATGATTA+TGG | 0.176951 | tig0023257:+18838 | Msa1407060:CDS |
| GGAGGTTCAAGCGGAGTTTA+TGG | 0.198154 | tig0023257:+18753 | Msa1407060:CDS |
| CGAGAAGCAGTTTGTGAATA+TGG | 0.254306 | tig0023257:+18732 | Msa1407060:CDS |
| GTCGACAATCAGCAAATCTA+TGG | 0.272483 | tig0023257:+18633 | Msa1407060:CDS |
| TCATCTGCTCTGTGCGTTTA+CGG | 0.305607 | tig0023257:-18546 | None:intergenic |
| GGAAGTTTCGGTTAATCTTC+CGG | 0.355996 | tig0023257:+18864 | Msa1407060:CDS |
| TGATTATGGGCTGGAAGTTT+CGG | 0.370615 | tig0023257:+18852 | Msa1407060:CDS |
| GGCGGCTGCTCATGCTGTTC+CGG | 0.374454 | tig0023257:+18888 | Msa1407060:CDS |
| TGCTCATGCTGTTCCGGTTA+AGG | 0.374890 | tig0023257:+18894 | Msa1407060:CDS |
| TCAGCATCCTTCTCCTTAAC+CGG | 0.398938 | tig0023257:-18907 | None:intergenic |
| GAGCACTCACGGCGTCCAAT+CGG | 0.402083 | tig0023257:-18588 | None:intergenic |
| CGTCCAATCGGGAGGATAAT+CGG | 0.420046 | tig0023257:-18576 | None:intergenic |
| CGACATCTTCTGCAAATTCC+CGG | 0.428245 | tig0023257:-18692 | None:intergenic |
| GGTTAATAGTTTGATGCAAC+AGG | 0.440152 | tig0023257:+18822 | Msa1407060:CDS |
| AACAGGTGGCGGATGATTAT+GGG | 0.452583 | tig0023257:+18839 | Msa1407060:CDS |
| TTCCCTTTCGACTCCGGAAG+GGG | 0.455520 | tig0023257:+18798 | Msa1407060:CDS |
| TTCGGTTAATCTTCCGGTGG+CGG | 0.462698 | tig0023257:+18870 | Msa1407060:CDS |
| ATCGACTTCCCTTTCGACTC+CGG | 0.467684 | tig0023257:+18792 | Msa1407060:CDS |
| TTGGAATCGTCGTTGGCGAC+CGG | 0.469029 | tig0023257:+18673 | Msa1407060:CDS |
| CTCCCCTTCCGGAGTCGAAA+GGG | 0.473087 | tig0023257:-18800 | None:intergenic |
| AAGCTTCTCTGTGTTTCCCA+TGG | 0.476337 | tig0023257:-18368 | None:intergenic |
| TAGTTTGATGCAACAGGTGG+CGG | 0.477361 | tig0023257:+18828 | Msa1407060:CDS |
| AGCACTCACGGCGTCCAATC+GGG | 0.483446 | tig0023257:-18587 | None:intergenic |
| ACAGCATGAGCAGCCGCCAC+CGG | 0.500440 | tig0023257:-18883 | None:intergenic |
| TGGAATCGTCGTTGGCGACC+GGG | 0.513207 | tig0023257:+18674 | Msa1407060:CDS |
| TGCTGTTCCGGTTAAGGAGA+AGG | 0.523122 | tig0023257:+18900 | Msa1407060:CDS |
| CTTCCCTTTCGACTCCGGAA+GGG | 0.524629 | tig0023257:+18797 | Msa1407060:CDS |
| AAACTATTAACCTCCCCTTC+CGG | 0.527569 | tig0023257:-18811 | None:intergenic |
| GGGAAACATCGTGAAATCGT+TGG | 0.530824 | tig0023257:+18654 | Msa1407060:CDS |
| CCAAGCACGAAAATGCGAAA+AGG | 0.531908 | tig0023257:+18438 | Msa1407060:CDS |
| GAAGCTTCTGAATCAGATCA+TGG | 0.534967 | tig0023257:+18384 | Msa1407060:CDS |
| ACTTCCCTTTCGACTCCGGA+AGG | 0.549210 | tig0023257:+18796 | Msa1407060:CDS |
| GCAGAAGATGTCGGAGACGA+TGG | 0.561045 | tig0023257:+18702 | Msa1407060:CDS |
| TAAGGAGAAGGATGCTGAGA+AGG | 0.573843 | tig0023257:+18912 | Msa1407060:CDS |
| TCGACAATCAGCAAATCTAT+GGG | 0.575428 | tig0023257:+18634 | Msa1407060:CDS |
| CCTCCCCTTCCGGAGTCGAA+AGG | 0.580228 | tig0023257:-18801 | None:intergenic |
| GAAATCGTTGGAATCGTCGT+TGG | 0.580522 | tig0023257:+18666 | Msa1407060:CDS |
| GGAGTTTATGGAAAGTGCTA+TGG | 0.582336 | tig0023257:+18765 | Msa1407060:CDS |
| CCTTTCGACTCCGGAAGGGG+AGG | 0.586411 | tig0023257:+18801 | Msa1407060:CDS |
| CTTGCTGAGCTTAAAGCTAG+AGG | 0.589782 | tig0023257:+18961 | Msa1407060:CDS |
| GGTGGCGGATGATTATGGGC+TGG | 0.595315 | tig0023257:+18843 | Msa1407060:CDS |
| GGATGCTGAGAAGGTTGATG+AGG | 0.596267 | tig0023257:+18921 | Msa1407060:CDS |
| GTTTATGGAAAGTGCTATGG+CGG | 0.596862 | tig0023257:+18768 | Msa1407060:CDS |
| TGTGAATATGGAGGTTCAAG+CGG | 0.607620 | tig0023257:+18744 | Msa1407060:CDS |
| GAGTGCTCGTCTCGATACAC+AGG | 0.608048 | tig0023257:+18603 | Msa1407060:CDS |
| AGCAATCGAGAAAGGTAACA+TGG | 0.611081 | tig0023257:+18492 | Msa1407060:CDS |
| TGTATCGAGACGAGCACTCA+CGG | 0.615716 | tig0023257:-18599 | None:intergenic |
| CGGGAATTTGCAGAAGATGT+CGG | 0.620775 | tig0023257:+18693 | Msa1407060:CDS |
| CCTCCGATTATCCTCCCGAT+TGG | 0.622929 | tig0023257:+18573 | Msa1407060:CDS |
| ATCGAGAAAGGTAACATGGA+CGG | 0.631489 | tig0023257:+18496 | Msa1407060:CDS |
| TTGATGAGGATGATTTGTCA+AGG | 0.632184 | tig0023257:+18935 | Msa1407060:CDS |
| TTTATGGAAAGTGCTATGGC+GGG | 0.633565 | tig0023257:+18769 | Msa1407060:CDS |
| TAATAGTTTGATGCAACAGG+TGG | 0.645930 | tig0023257:+18825 | Msa1407060:CDS |
| GAAGCAGTTTGTGAATATGG+AGG | 0.657749 | tig0023257:+18735 | Msa1407060:CDS |
| AGTTTCGGTTAATCTTCCGG+TGG | 0.683279 | tig0023257:+18867 | Msa1407060:CDS |
| CCAATCGGGAGGATAATCGG+AGG | 0.739296 | tig0023257:-18573 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTCACCTTGAGTTTTT+CGG | - | tig0023257:18473-18492 | None:intergenic | 25.0% |
| AGAGAAATCCGAAAAACTCA+AGG | + | tig0023257:18462-18481 | Msa1407060:CDS | 35.0% | |
| GTGAAAAAAGCAATCGAGAA+AGG | + | tig0023257:18484-18503 | Msa1407060:CDS | 35.0% | |
| TCGACAATCAGCAAATCTAT+GGG | + | tig0023257:18634-18653 | Msa1407060:CDS | 35.0% | |
| GGTTAATAGTTTGATGCAAC+AGG | + | tig0023257:18822-18841 | Msa1407060:CDS | 35.0% | |
| TAATAGTTTGATGCAACAGG+TGG | + | tig0023257:18825-18844 | Msa1407060:CDS | 35.0% | |
| ! | TTGATGAGGATGATTTGTCA+AGG | + | tig0023257:18935-18954 | Msa1407060:CDS | 35.0% |
| GAAGCTTCTGAATCAGATCA+TGG | + | tig0023257:18384-18403 | Msa1407060:CDS | 40.0% | |
| !! | TTGGCGTTGAAGAGATTTTG+AGG | - | tig0023257:18422-18441 | None:intergenic | 40.0% |
| AGCAATCGAGAAAGGTAACA+TGG | + | tig0023257:18492-18511 | Msa1407060:CDS | 40.0% | |
| ATCGAGAAAGGTAACATGGA+CGG | + | tig0023257:18496-18515 | Msa1407060:CDS | 40.0% | |
| GTCGACAATCAGCAAATCTA+TGG | + | tig0023257:18633-18652 | Msa1407060:CDS | 40.0% | |
| CGAGAAGCAGTTTGTGAATA+TGG | + | tig0023257:18732-18751 | Msa1407060:CDS | 40.0% | |
| GAAGCAGTTTGTGAATATGG+AGG | + | tig0023257:18735-18754 | Msa1407060:CDS | 40.0% | |
| TGTGAATATGGAGGTTCAAG+CGG | + | tig0023257:18744-18763 | Msa1407060:CDS | 40.0% | |
| !! | GGAGTTTATGGAAAGTGCTA+TGG | + | tig0023257:18765-18784 | Msa1407060:CDS | 40.0% |
| !! | GTTTATGGAAAGTGCTATGG+CGG | + | tig0023257:18768-18787 | Msa1407060:CDS | 40.0% |
| !! | TTTATGGAAAGTGCTATGGC+GGG | + | tig0023257:18769-18788 | Msa1407060:CDS | 40.0% |
| AAACTATTAACCTCCCCTTC+CGG | - | tig0023257:18814-18833 | None:intergenic | 40.0% | |
| !! | TGATTATGGGCTGGAAGTTT+CGG | + | tig0023257:18852-18871 | Msa1407060:CDS | 40.0% |
| GGAAGTTTCGGTTAATCTTC+CGG | + | tig0023257:18864-18883 | Msa1407060:CDS | 40.0% | |
| ! | CCTTTTCGCATTTTCGTGCT+TGG | - | tig0023257:18441-18460 | None:intergenic | 45.0% |
| CCAAGCACGAAAATGCGAAA+AGG | + | tig0023257:18438-18457 | Msa1407060:CDS | 45.0% | |
| TCATCTGCTCTGTGCGTTTA+CGG | - | tig0023257:18549-18568 | None:intergenic | 45.0% | |
| GGGAAACATCGTGAAATCGT+TGG | + | tig0023257:18654-18673 | Msa1407060:CDS | 45.0% | |
| GAAATCGTTGGAATCGTCGT+TGG | + | tig0023257:18666-18685 | Msa1407060:CDS | 45.0% | |
| CGACATCTTCTGCAAATTCC+CGG | - | tig0023257:18695-18714 | None:intergenic | 45.0% | |
| CGGGAATTTGCAGAAGATGT+CGG | + | tig0023257:18693-18712 | Msa1407060:CDS | 45.0% | |
| TAGTTTGATGCAACAGGTGG+CGG | + | tig0023257:18828-18847 | Msa1407060:CDS | 45.0% | |
| !! | AACAGGTGGCGGATGATTAT+GGG | + | tig0023257:18839-18858 | Msa1407060:CDS | 45.0% |
| AGTTTCGGTTAATCTTCCGG+TGG | + | tig0023257:18867-18886 | Msa1407060:CDS | 45.0% | |
| TCAGCATCCTTCTCCTTAAC+CGG | - | tig0023257:18910-18929 | None:intergenic | 45.0% | |
| TAAGGAGAAGGATGCTGAGA+AGG | + | tig0023257:18912-18931 | Msa1407060:CDS | 45.0% | |
| CTTGCTGAGCTTAAAGCTAG+AGG | + | tig0023257:18961-18980 | Msa1407060:CDS | 45.0% | |
| CGTCCAATCGGGAGGATAAT+CGG | - | tig0023257:18579-18598 | None:intergenic | 50.0% | |
| TGTATCGAGACGAGCACTCA+CGG | - | tig0023257:18602-18621 | None:intergenic | 50.0% | |
| GGAGGTTCAAGCGGAGTTTA+TGG | + | tig0023257:18753-18772 | Msa1407060:CDS | 50.0% | |
| ! | ATCGACTTCCCTTTCGACTC+CGG | + | tig0023257:18792-18811 | Msa1407060:CDS | 50.0% |
| !! | CAACAGGTGGCGGATGATTA+TGG | + | tig0023257:18838-18857 | Msa1407060:CDS | 50.0% |
| TTCGGTTAATCTTCCGGTGG+CGG | + | tig0023257:18870-18889 | Msa1407060:CDS | 50.0% | |
| TGCTCATGCTGTTCCGGTTA+AGG | + | tig0023257:18894-18913 | Msa1407060:CDS | 50.0% | |
| TGCTGTTCCGGTTAAGGAGA+AGG | + | tig0023257:18900-18919 | Msa1407060:CDS | 50.0% | |
| !! | GGATGCTGAGAAGGTTGATG+AGG | + | tig0023257:18921-18940 | Msa1407060:CDS | 50.0% |
| CCAATCGGGAGGATAATCGG+AGG | - | tig0023257:18576-18595 | None:intergenic | 55.0% | |
| CCTCCGATTATCCTCCCGAT+TGG | + | tig0023257:18573-18592 | Msa1407060:CDS | 55.0% | |
| GAGTGCTCGTCTCGATACAC+AGG | + | tig0023257:18603-18622 | Msa1407060:CDS | 55.0% | |
| TTGGAATCGTCGTTGGCGAC+CGG | + | tig0023257:18673-18692 | Msa1407060:CDS | 55.0% | |
| GCAGAAGATGTCGGAGACGA+TGG | + | tig0023257:18702-18721 | Msa1407060:CDS | 55.0% | |
| ACTTCCCTTTCGACTCCGGA+AGG | + | tig0023257:18796-18815 | Msa1407060:CDS | 55.0% | |
| CTTCCCTTTCGACTCCGGAA+GGG | + | tig0023257:18797-18816 | Msa1407060:CDS | 55.0% | |
| TTCCCTTTCGACTCCGGAAG+GGG | + | tig0023257:18798-18817 | Msa1407060:CDS | 55.0% | |
| AGCACTCACGGCGTCCAATC+GGG | - | tig0023257:18590-18609 | None:intergenic | 60.0% | |
| GAGCACTCACGGCGTCCAAT+CGG | - | tig0023257:18591-18610 | None:intergenic | 60.0% | |
| TGGAATCGTCGTTGGCGACC+GGG | + | tig0023257:18674-18693 | Msa1407060:CDS | 60.0% | |
| CTCCCCTTCCGGAGTCGAAA+GGG | - | tig0023257:18803-18822 | None:intergenic | 60.0% | |
| !! | GGTGGCGGATGATTATGGGC+TGG | + | tig0023257:18843-18862 | Msa1407060:CDS | 60.0% |
| ACTCACGGCGTCCAATCGGG+AGG | - | tig0023257:18587-18606 | None:intergenic | 65.0% | |
| CCTCCCCTTCCGGAGTCGAA+AGG | - | tig0023257:18804-18823 | None:intergenic | 65.0% | |
| CCTTTCGACTCCGGAAGGGG+AGG | + | tig0023257:18801-18820 | Msa1407060:CDS | 65.0% | |
| ACAGCATGAGCAGCCGCCAC+CGG | - | tig0023257:18886-18905 | None:intergenic | 65.0% | |
| GGCGGCTGCTCATGCTGTTC+CGG | + | tig0023257:18888-18907 | Msa1407060:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0023257 | gene | 18370 | 18987 | 18370 | ID=Msa1407060;Name=Msa1407060 |
| tig0023257 | mRNA | 18370 | 18987 | 18370 | ID=Msa1407060-mRNA-1;Parent=Msa1407060;Name=Msa1407060-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|205 |
| tig0023257 | exon | 18370 | 18987 | 18370 | ID=Msa1407060-mRNA-1:exon:24864;Parent=Msa1407060-mRNA-1 |
| tig0023257 | CDS | 18370 | 18987 | 18370 | ID=Msa1407060-mRNA-1:cds;Parent=Msa1407060-mRNA-1 |
| Gene Sequence |
| Protein sequence |
