AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0569500


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0569500 MtrunA17_Chr8g0384611 88.934 497 54 1 13 509 197 692 0.0 912
Msa0569500 MtrunA17_Chr3g0130541 70.563 231 68 0 278 508 370 600 8.40e-113 347
Msa0569500 MtrunA17_Chr3g0130541 45.963 161 76 4 14 174 229 378 6.34e-32 129
Msa0569500 MtrunA17_Chr8g0384561 67.172 198 49 2 13 208 69 252 1.95e-82 256
Msa0569500 MtrunA17_Chr8g0384581 90.000 110 11 0 400 509 1 110 1.79e-66 209
Msa0569500 MtrunA17_Chr8g0384571 87.379 103 13 0 241 343 1 103 1.35e-56 184
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0569500 AT5G39450.1 54.386 228 98 2 283 508 350 573 4.87e-78 255
Msa0569500 AT5G39480.1 50.215 233 108 3 280 508 330 558 2.98e-69 232
Msa0569500 AT5G39490.1 46.121 232 119 2 280 509 330 557 3.41e-64 218
Msa0569500 AT5G39460.1 49.130 230 104 5 283 508 341 561 1.60e-63 217

Find 174 sgRNAs with CRISPR-Local

Find 524 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGAAAGTGTTGCTATTATT+TGG 0.150442 4_1:+71396695 None:intergenic
AAAAGCCGCTACCCGAATTT+TGG 0.189280 4_1:-71392568 Msa0569500:five_prime_UTR
ACCAAGTGTATGCTGGTTTA+TGG 0.195342 4_1:-71387931 Msa0569500:CDS
TTGTATTCAGATTGAAAATA+AGG 0.221115 4_1:-71388695 Msa0569500:CDS
TAGATTAGAGGTTCCTAATA+TGG 0.222044 4_1:-71388836 Msa0569500:CDS
TAAATTCTTTATTAGGCTAT+TGG 0.250453 4_1:-71396553 Msa0569500:five_prime_UTR
GGTTTATGGGGCGGTACTTT+TGG 0.253329 4_1:-71387917 Msa0569500:CDS
TCCCTCTTTGTACTTCAAAA+TGG 0.282347 4_1:-71387593 Msa0569500:CDS
GATGCGGTATACTCATGTTT+TGG 0.282924 4_1:-71396288 Msa0569500:five_prime_UTR
TGGTTTGGGATGCATTCTTT+AGG 0.289253 4_1:-71396172 Msa0569500:five_prime_UTR
TCTTCCCAAATCTAGCAAAA+AGG 0.291604 4_1:-71392030 Msa0569500:intron
GCATACACTTGGTCTTCTTT+AGG 0.294855 4_1:+71387941 None:intergenic
GAATATCAGAAAAGTGTTAA+AGG 0.295171 4_1:+71396742 None:intergenic
AATGGTCCAGTTCCCATATT+AGG 0.301762 4_1:+71388823 None:intergenic
TTCTTGCTAAATTCTTTATT+AGG 0.305249 4_1:-71396560 Msa0569500:five_prime_UTR
GCTTCCTTTGGAATTGGTTT+GGG 0.305701 4_1:-71396186 Msa0569500:five_prime_UTR
GGTTTGGGATGCATTCTTTA+GGG 0.307058 4_1:-71396171 Msa0569500:intron
TTGGTGGTGGTGCTTTGTTT+TGG 0.307690 4_1:-71396329 Msa0569500:five_prime_UTR
GATGCTTATTAAATTTATAA+AGG 0.310256 4_1:-71391887 Msa0569500:intron
AAATTCTTTATTAGGCTATT+GGG 0.312154 4_1:-71396552 Msa0569500:five_prime_UTR
TTGAAATGAGTGTTAAAGTT+TGG 0.313532 4_1:-71396485 Msa0569500:five_prime_UTR
GGTGGCTTTAAACATATCTT+TGG 0.314186 4_1:-71388517 Msa0569500:CDS
GACTTGATCCCTCCAAAATT+CGG 0.318399 4_1:+71392556 None:intergenic
GAAGGTATTGCAAGTGGTTA+TGG 0.318562 4_1:-71387644 Msa0569500:CDS
GGCTTCCTTTGGAATTGGTT+TGG 0.319839 4_1:-71396187 Msa0569500:five_prime_UTR
TAGTAAACTTTCTTGCAAAA+AGG 0.331608 4_1:+71391254 None:intergenic
CTAGATCTTCGATGGTTACT+TGG 0.335719 4_1:+71388430 None:intergenic
TACAACCTTGGCATGCTTCC+TGG 0.336465 4_1:+71392908 None:intergenic
CTTGCAAGTTAAGTCTTTGC+AGG 0.339370 4_1:+71387528 None:intergenic
CTTCTTCTGATCCGTTTCCT+TGG 0.339771 4_1:-71387718 Msa0569500:CDS
AGAAAGTGGTTCAGCAGAAA+TGG 0.341229 4_1:-71396376 Msa0569500:five_prime_UTR
CCAAGTGTATGCTGGTTTAT+GGG 0.343323 4_1:-71387930 Msa0569500:CDS
CACTCGCAACATGAATTACT+TGG 0.343511 4_1:-71390481 Msa0569500:CDS
CGTTTCCTTGGGAAACTGAT+AGG 0.346496 4_1:-71387706 Msa0569500:CDS
CACAACACGGCCGCAGGAAC+TGG 0.352037 4_1:-71388148 Msa0569500:CDS
AATATCAGAAAAGTGTTAAA+GGG 0.354961 4_1:+71396743 None:intergenic
CACTAGCCAAGTTAGATTAG+AGG 0.355121 4_1:-71388848 Msa0569500:CDS
ATGAAGAGAAAAGCAATCTT+AGG 0.355547 4_1:+71396221 None:intergenic
TGCAAGGAATAGGCTTCCTT+TGG 0.360242 4_1:-71396198 Msa0569500:five_prime_UTR
AGTATGTTCAATGGAATTAG+AGG 0.363663 4_1:-71388653 Msa0569500:CDS
TCCACGGCGCTCACGATCTC+TGG 0.364508 4_1:+71391948 None:intergenic
CAGTTATAGACTGGAATAAC+TGG 0.365025 4_1:+71393080 None:intergenic
CAGTTATTCCAGTCTATAAC+TGG 0.365399 4_1:-71393079 Msa0569500:five_prime_UTR
ACAGAATCATCTCTTGATCT+AGG 0.368549 4_1:+71388796 None:intergenic
GAATAGGCTTCCTTTGGAAT+TGG 0.368624 4_1:-71396192 Msa0569500:five_prime_UTR
TTCTTCTGATCCGTTTCCTT+GGG 0.370545 4_1:-71387717 Msa0569500:CDS
AAATATCCAGGAGCAAAATC+TGG 0.380597 4_1:-71387617 Msa0569500:CDS
TGAATTACTTGGGCTATGTT+TGG 0.380851 4_1:-71390470 Msa0569500:CDS
ATGGCGATCTTGCCTTTGTT+TGG 0.382428 4_1:-71387574 Msa0569500:CDS
ATTAGGCTATTGGGTTGGTA+TGG 0.398259 4_1:-71396543 Msa0569500:five_prime_UTR
CGCTATGCATTGCATCCTAA+TGG 0.401483 4_1:-71387773 Msa0569500:CDS
TTCTCTTCATTGCAAGGAAT+AGG 0.401929 4_1:-71396208 Msa0569500:five_prime_UTR
AAGAGCATTCCTTGTTCAAA+TGG 0.407584 4_1:-71388737 Msa0569500:CDS
GTTTGAACATAGTGTTCATC+TGG 0.409473 4_1:+71392270 None:intergenic
ATAAACATTGCTGAACCATT+AGG 0.413798 4_1:+71387758 None:intergenic
AAAACAAAGCGGTCATTTAG+AGG 0.415697 4_1:+71394021 None:intergenic
TTAACTGAAATCTCCTAAAA+CGG 0.427334 4_1:+71390813 None:intergenic
TGCTTGTACACCATTCTCTT+CGG 0.432521 4_1:+71391299 None:intergenic
CTATCCACAAAGCAATATAA+AGG 0.433889 4_1:+71396596 None:intergenic
GAGGTTCCTAATATGGGAAC+TGG 0.435900 4_1:-71388829 Msa0569500:CDS
CAGCATCACAAAATGATTGC+TGG 0.437173 4_1:-71388232 Msa0569500:CDS
AGATTAGAGGTTCCTAATAT+GGG 0.437762 4_1:-71388835 Msa0569500:CDS
TGGTATACAGTTGTGGATCT+TGG 0.438795 4_1:+71392290 None:intergenic
CCAGTCTATAACTGGAGAAA+AGG 0.444598 4_1:-71393071 Msa0569500:five_prime_UTR
GTGTAGCTGAAGTTGTATAA+AGG 0.444599 4_1:+71393484 None:intergenic
ACTTGATCCCTCCAAAATTC+GGG 0.445648 4_1:+71392557 None:intergenic
GCTTTGCATTCTTTATCTCA+TGG 0.448007 4_1:+71388098 None:intergenic
CTGCAATGCAACACGATGGC+AGG 0.458482 4_1:-71388376 Msa0569500:CDS
ACACTATGTTCAAACATTGC+TGG 0.459415 4_1:-71392262 Msa0569500:five_prime_UTR
TTAGAATATGAAGAAGAAAG+TGG 0.462552 4_1:-71396390 Msa0569500:five_prime_UTR
CGATCTTGCCTTTGTTTGGA+AGG 0.465116 4_1:-71387570 Msa0569500:CDS
TGCAGTGGGCTGTTCTGACC+AGG 0.465429 4_1:-71392926 Msa0569500:intron
TTGGGTTGGTATGGATCTGT+TGG 0.468610 4_1:-71396534 Msa0569500:five_prime_UTR
CAAGGATCTAGTGCAATTGA+TGG 0.475835 4_1:-71388196 Msa0569500:CDS
GGTTATGGTTTCAAATATCC+AGG 0.478786 4_1:-71387629 Msa0569500:CDS
AATGGAATTAGAGGTTGATC+AGG 0.481928 4_1:-71388644 Msa0569500:CDS
GGCCGAATATGAACAAAAGT+TGG 0.487071 4_1:-71387994 Msa0569500:CDS
GCTTGTAAACACATTTAAGC+AGG 0.488155 4_1:+71387436 None:intergenic
TAACTGGAGAAAAGGATCTC+AGG 0.488468 4_1:-71393063 Msa0569500:intron
TTTATAAATTTAATAAGCAT+CGG 0.496105 4_1:+71391889 None:intergenic
CCCATAAACCAGCATACACT+TGG 0.497925 4_1:+71387930 None:intergenic
GTGTCACTATCCTTATTGCT+TGG 0.500008 4_1:+71388580 None:intergenic
TACAGCTTCGCTGACACAAA+AGG 0.500980 4_1:-71393128 Msa0569500:intron
AAGGGACAACAACTTCTCAT+TGG 0.500982 4_1:-71387818 Msa0569500:CDS
TGGATCTTGGACGTGTCAGC+AGG 0.503820 4_1:+71392303 None:intergenic
GCGCTCACGATCTCTGGAGT+TGG 0.504969 4_1:+71391954 None:intergenic
TCACTATCCTTATTGCTTGG+AGG 0.505487 4_1:+71388583 None:intergenic
ATCGTCCTCCACTACAACCT+TGG 0.509580 4_1:+71392896 None:intergenic
CTATCAGTTTCCCAAGGAAA+CGG 0.510000 4_1:+71387707 None:intergenic
TCCCTCCAAAATTCGGGTAG+CGG 0.515418 4_1:+71392563 None:intergenic
TCTGAGAACTTATAAGTCAC+TGG 0.518003 4_1:+71391919 None:intergenic
AGGGGAAGAAGTATGTTCAA+TGG 0.525453 4_1:-71388662 Msa0569500:CDS
GAAAATAAGGAAAATTCTCA+AGG 0.528849 4_1:-71388682 Msa0569500:CDS
TCAAGTTAATGATAGCATAC+AGG 0.530790 4_1:-71394956 Msa0569500:intron
TCTTTATTAGGCTATTGGGT+TGG 0.531267 4_1:-71396548 Msa0569500:five_prime_UTR
TAGGAACCTCTAATCTAACT+TGG 0.531329 4_1:+71388842 None:intergenic
TTGAATTGATTTGAAATGGT+GGG 0.531524 4_1:-71396439 Msa0569500:five_prime_UTR
GGAACTGGAGAGAATGACAT+AGG 0.532645 4_1:-71388133 Msa0569500:CDS
GCCAGGGTTTGTGTTGAATG+AGG 0.535969 4_1:-71395010 Msa0569500:five_prime_UTR
GGGTGAAGCAAGCATGATAG+AGG 0.536814 4_1:-71394079 Msa0569500:five_prime_UTR
TGCTTTGAAGCTTCTTAACA+TGG 0.537461 4_1:-71391224 Msa0569500:intron
TCAGCAGAAATGGAAGAAGA+AGG 0.538184 4_1:-71396366 Msa0569500:five_prime_UTR
AAAGAAGACCAAGTGTATGC+TGG 0.538643 4_1:-71387938 Msa0569500:CDS
GGCTATGTTTGGTTCAAATG+AGG 0.540156 4_1:-71390459 Msa0569500:intron
ATGGCTCAAATGTATAAGCT+TGG 0.541711 4_1:-71388718 Msa0569500:CDS
TACTTAGTAAAGAAGTAAGA+TGG 0.542385 4_1:-71390740 Msa0569500:five_prime_UTR
CAAGGAAACGGATCAGAAGA+AGG 0.543211 4_1:+71387719 None:intergenic
GCTCTCGTATTGGGAGTCGA+AGG 0.543524 4_1:-71387837 Msa0569500:CDS
ATCAAGAGAAAGAGTCTTGG+TGG 0.546154 4_1:-71388550 Msa0569500:CDS
AAGAGAATGGTGTACAAGCA+AGG 0.546374 4_1:-71391296 Msa0569500:five_prime_UTR
ACAAGAGACGATCAAAGATC+TGG 0.547199 4_1:-71388352 Msa0569500:CDS
TTTGAATTGATTTGAAATGG+TGG 0.548180 4_1:-71396440 Msa0569500:five_prime_UTR
ACTCTGCTTGTATCAGCCAC+TGG 0.557794 4_1:+71390771 None:intergenic
CAAGTGTATGCTGGTTTATG+GGG 0.561849 4_1:-71387929 Msa0569500:CDS
GAAGCATGCCAAGGTTGTAG+TGG 0.562145 4_1:-71392904 Msa0569500:five_prime_UTR
ATTGATTTGAAATGGTGGGT+TGG 0.566299 4_1:-71396435 Msa0569500:five_prime_UTR
CAGCAACACAACACGGCCGC+AGG 0.567323 4_1:-71388154 Msa0569500:CDS
TTCAACACAAACCCTGGCCT+AGG 0.569608 4_1:+71395015 None:intergenic
CTCTCGTATTGGGAGTCGAA+GGG 0.570981 4_1:-71387836 Msa0569500:CDS
CATCAATACATCACAACCGC+AGG 0.571677 4_1:-71388454 Msa0569500:CDS
TTGCAAGTTAAGTCTTTGCA+GGG 0.574271 4_1:+71387529 None:intergenic
GTTCATCTGGTATACAGTTG+TGG 0.575948 4_1:+71392283 None:intergenic
GCCTCATTCAACACAAACCC+TGG 0.577011 4_1:+71395009 None:intergenic
CTCTAATCTAACTTGGCTAG+TGG 0.577216 4_1:+71388849 None:intergenic
GCTGGAACAATAGATGATCA+AGG 0.580133 4_1:-71388214 Msa0569500:CDS
ATGTCTAAGTAAAATGCGCT+CGG 0.580748 4_1:+71394056 None:intergenic
TGCATCAAGAGAAAGAGTCT+TGG 0.581200 4_1:-71388553 Msa0569500:CDS
ATATCAGAAAAGTGTTAAAG+GGG 0.582431 4_1:+71396744 None:intergenic
AAAATAAGGAAAATTCTCAA+GGG 0.585290 4_1:-71388681 Msa0569500:CDS
TGAGTGTTAAGAGTGGAACA+AGG 0.586057 4_1:+71396775 None:intergenic
TTGTCAATAGGAGGCAGAGA+AGG 0.586071 4_1:+71387479 None:intergenic
AACAAAATGCTTATTGCCAG+TGG 0.587980 4_1:-71390787 Msa0569500:five_prime_UTR
ACATTTGAGCCATTTGAACA+AGG 0.588906 4_1:+71388728 None:intergenic
CGAAGATCTAGTACAATCGA+TGG 0.590437 4_1:-71388274 Msa0569500:CDS
AATATTGATAACACTGCCAT+CGG 0.591140 4_1:+71388324 None:intergenic
AAGGATCTAGTGCAATTGAT+GGG 0.592054 4_1:-71388195 Msa0569500:CDS
GATCAGTGACACATACTGCA+TGG 0.596005 4_1:-71391984 Msa0569500:five_prime_UTR
GTTTGTTGTTTATGCAGATG+CGG 0.596175 4_1:-71396304 Msa0569500:five_prime_UTR
ATCAGTGACACATACTGCAT+GGG 0.597196 4_1:-71391983 Msa0569500:five_prime_UTR
AGAGAATGGTGTACAAGCAA+GGG 0.597758 4_1:-71391295 Msa0569500:five_prime_UTR
CGGTCGAACTAGATCTTCGA+TGG 0.597888 4_1:+71388422 None:intergenic
GAACTGGAGAGAATGACATA+GGG 0.599521 4_1:-71388132 Msa0569500:CDS
GAGATCGTGAGCGCCGTGGA+TGG 0.599731 4_1:-71391945 Msa0569500:five_prime_UTR
GTCATTCTCTCCAGTTCCTG+CGG 0.600499 4_1:+71388138 None:intergenic
TGTAGAGTGAGTGTTAAGAG+TGG 0.600600 4_1:+71396768 None:intergenic
GCGGGAGAAGGTATTGCAAG+TGG 0.601335 4_1:-71387650 Msa0569500:CDS
TCTAGATTCCTTCCAAACAA+AGG 0.601462 4_1:+71387562 None:intergenic
CGATTGTACTAGATCTTCGA+TGG 0.602215 4_1:+71388278 None:intergenic
TCTTCTTTAGGAACTTGCAA+AGG 0.603983 4_1:+71387953 None:intergenic
GCATGCCAAGGTTGTAGTGG+AGG 0.609985 4_1:-71392901 Msa0569500:five_prime_UTR
TGCAATGCAACACGATGGCA+GGG 0.609989 4_1:-71388375 Msa0569500:CDS
GAGTGAGACATTGTTTATGT+CGG 0.611221 4_1:+71390499 None:intergenic
AATATTGACAGCACTGCCAT+CGG 0.613779 4_1:+71388402 None:intergenic
TCTCTTGATCTAGGAAACAA+TGG 0.618009 4_1:+71388805 None:intergenic
ACTCGCAACATGAATTACTT+GGG 0.619403 4_1:-71390480 Msa0569500:CDS
TTGGATCTTCTACTTCTGAG+TGG 0.624570 4_1:-71396515 Msa0569500:five_prime_UTR
AGACTGAATACCGAAGAGAA+TGG 0.627600 4_1:-71391309 Msa0569500:five_prime_UTR
CGAAGATCTAGTTCGACCGA+TGG 0.627815 4_1:-71388418 Msa0569500:CDS
GTGTATGCTGGTTTATGGGG+CGG 0.628467 4_1:-71387926 Msa0569500:CDS
AAGTCACTGGATGCCATCCA+CGG 0.632825 4_1:+71391932 None:intergenic
GCATCCCAAACCAATTCCAA+AGG 0.633005 4_1:+71396182 None:intergenic
CAAAGATCTGGTACAACCGA+TGG 0.633916 4_1:-71388340 Msa0569500:CDS
TCCAGAGATCGTGAGCGCCG+TGG 0.637645 4_1:-71391949 Msa0569500:five_prime_UTR
GAGTTCCTATCAGTTTCCCA+AGG 0.655964 4_1:+71387701 None:intergenic
TCTGACCAGGAAGCATGCCA+AGG 0.656062 4_1:-71392913 Msa0569500:five_prime_UTR
TATTGATCAGCAACACAACA+CGG 0.656491 4_1:-71388161 Msa0569500:CDS
AAATAAGGAAAATTCTCAAG+GGG 0.659702 4_1:-71388680 Msa0569500:CDS
TCGATGGTTACTTGGCCCTG+CGG 0.661597 4_1:+71388438 None:intergenic
ATCAATACATCACAACCGCA+GGG 0.666747 4_1:-71388453 Msa0569500:CDS
AGATCTAGTACAATCGATGG+AGG 0.682974 4_1:-71388271 Msa0569500:CDS
TATACCCTCACCTATCTGAG+AGG 0.685286 4_1:+71393998 None:intergenic
AGCTTCGCTGACACAAAAGG+AGG 0.705360 4_1:-71393125 Msa0569500:five_prime_UTR
TGATCTGCAATGCAACACGA+TGG 0.713676 4_1:-71388380 Msa0569500:CDS
TATCTGAGAGGAAAACAAAG+CGG 0.756541 4_1:+71394010 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTATAAATTTAATAAGCAT+CGG + chr4_1:71392322-71392341 None:intergenic 10.0%
!!! TTTTGTTTCTATTTGTTTTT+TGG - chr4_1:71388087-71388106 Msa0569500:CDS 15.0%
!! ATTAAGTTTATCAATGTAAA+GGG + chr4_1:71388656-71388675 None:intergenic 15.0%
!! TATTAAGTTTATCAATGTAA+AGG + chr4_1:71388657-71388676 None:intergenic 15.0%
!!! TAATAGTAGTTTTTACTTTT+TGG - chr4_1:71388672-71388691 Msa0569500:CDS 15.0%
!! AAATCATTATTACAAAAAAG+AGG + chr4_1:71388889-71388908 None:intergenic 15.0%
!! AATTATTAGAAATGTTGTAA+TGG + chr4_1:71388938-71388957 None:intergenic 15.0%
!!! TTTCTCTTTATAGTTTTTTT+AGG + chr4_1:71389392-71389411 None:intergenic 15.0%
!! GATAAAAATAAGAAACTATT+TGG - chr4_1:71389444-71389463 Msa0569500:intron 15.0%
!!! TTGAAATAATCTCATTTTAT+CGG - chr4_1:71389949-71389968 Msa0569500:intron 15.0%
!! TATATAATGATTGAAGTTTA+TGG + chr4_1:71390249-71390268 None:intergenic 15.0%
!! ATTTAACAAAACTAATTGTT+GGG + chr4_1:71390950-71390969 None:intergenic 15.0%
!! TATTTAACAAAACTAATTGT+TGG + chr4_1:71390951-71390970 None:intergenic 15.0%
!! AAATGAATAAATAACTACAA+AGG + chr4_1:71391021-71391040 None:intergenic 15.0%
!! GATGCTTATTAAATTTATAA+AGG - chr4_1:71392321-71392340 Msa0569500:intron 15.0%
!!! TAATTAACATTTTGTTAGAA+TGG - chr4_1:71392457-71392476 Msa0569500:intron 15.0%
!! TATATAAACTAATAAAAGCA+AGG - chr4_1:71392548-71392567 Msa0569500:intron 15.0%
!!! ATTAAGATTCAGATTTTATT+AGG + chr4_1:71392653-71392672 None:intergenic 15.0%
!!! ACTATTATTTTCTATAAAGA+GGG + chr4_1:71393675-71393694 None:intergenic 15.0%
!!! AACTATTATTTTCTATAAAG+AGG + chr4_1:71393676-71393695 None:intergenic 15.0%
!!! AAAAACATCAGTTATTTTAT+AGG - chr4_1:71394067-71394086 Msa0569500:five_prime_UTR 15.0%
!!! TTTTATAGGTATTTTTTTGA+AGG - chr4_1:71394081-71394100 Msa0569500:five_prime_UTR 15.0%
!! TATAAACTTTGAATAATTGA+AGG + chr4_1:71394460-71394479 None:intergenic 15.0%
!! AAATATGAAAAATTGTCAAT+AGG + chr4_1:71396744-71396763 None:intergenic 15.0%
!!! AATATCAGAAAAGTGTTAAA+GGG + chr4_1:71387468-71387487 None:intergenic 20.0%
!! TTCTTGCTAAATTCTTTATT+AGG - chr4_1:71387648-71387667 Msa0569500:CDS 20.0%
!! TAAATTCTTTATTAGGCTAT+TGG - chr4_1:71387655-71387674 Msa0569500:CDS 20.0%
!! AAATTCTTTATTAGGCTATT+GGG - chr4_1:71387656-71387675 Msa0569500:CDS 20.0%
!!! ATGTTAGTGGTTATTTTATT+AGG - chr4_1:71388360-71388379 Msa0569500:CDS 20.0%
!!! TGTTAGTGGTTATTTTATTA+GGG - chr4_1:71388361-71388380 Msa0569500:CDS 20.0%
!!! AAATGAAATTTGTTAGTAGA+AGG - chr4_1:71388386-71388405 Msa0569500:CDS 20.0%
!! TTGTTTATGGTAAGATAATA+TGG - chr4_1:71388587-71388606 Msa0569500:CDS 20.0%
!!! AACATTTATATTGCATTTTC+AGG - chr4_1:71389138-71389157 Msa0569500:intron 20.0%
!!! ACATTTATATTGCATTTTCA+GGG - chr4_1:71389139-71389158 Msa0569500:intron 20.0%
!! AACTATTTGGTAGAATATTA+TGG - chr4_1:71389457-71389476 Msa0569500:intron 20.0%
!!! CTTATTTTTATAAGCTATTC+TGG - chr4_1:71389658-71389677 Msa0569500:intron 20.0%
!!! CAAAAAAATTTAGTTTGGTA+CGG + chr4_1:71390432-71390451 None:intergenic 20.0%
!! GGTTTCAAAAAAATTTAGTT+TGG + chr4_1:71390437-71390456 None:intergenic 20.0%
!! AGATTAATGTCGTATATATA+TGG + chr4_1:71390845-71390864 None:intergenic 20.0%
!!! TTGCAAAATTTTTGAAACAT+TGG + chr4_1:71391347-71391366 None:intergenic 20.0%
!!! AATGTTTCAAAAATTTTGCA+AGG - chr4_1:71391346-71391365 Msa0569500:intron 20.0%
!!! TTGGGTTTTATAACATTTAA+TGG + chr4_1:71391521-71391540 None:intergenic 20.0%
!! ATGGCTTAAAAAATACTAAA+TGG + chr4_1:71391552-71391571 None:intergenic 20.0%
!! TTCAATATTTCATTCTGAAT+TGG - chr4_1:71391800-71391819 Msa0569500:intron 20.0%
!! AAAATATTAAAGCAAAACCA+GGG + chr4_1:71392141-71392160 None:intergenic 20.0%
!! AAAAATATTAAAGCAAAACC+AGG + chr4_1:71392142-71392161 None:intergenic 20.0%
!! TTTCATTCTGTGATAATAAT+AGG - chr4_1:71392392-71392411 Msa0569500:intron 20.0%
!! TTCATTCTGTGATAATAATA+GGG - chr4_1:71392393-71392412 Msa0569500:intron 20.0%
!! TATTGTTTGAATTCATCTTT+AGG + chr4_1:71392506-71392525 None:intergenic 20.0%
!!! TGAGCTTTCAAATATTTTTA+CGG - chr4_1:71393046-71393065 Msa0569500:intron 20.0%
!!! AGATCATTTTTTAGTTTCTT+CGG - chr4_1:71393075-71393094 Msa0569500:five_prime_UTR 20.0%
!! TTGAGTTATTTATCTAAACA+AGG - chr4_1:71393324-71393343 Msa0569500:intron 20.0%
!! CAAAAAATAAGTAACAATCT+CGG + chr4_1:71393358-71393377 None:intergenic 20.0%
!! TTGTGATATATATGTAGATA+TGG - chr4_1:71393874-71393893 Msa0569500:intron 20.0%
!!! TATAATTTGTCTAAGAAATG+AGG - chr4_1:71393977-71393996 Msa0569500:intron 20.0%
!! TAAACTATAACATGAGAAAA+TGG + chr4_1:71394292-71394311 None:intergenic 20.0%
!! AAAATGAACTATATAAGTGT+TGG + chr4_1:71394668-71394687 None:intergenic 20.0%
!!! TCTAATATGTTTTTTCTTCA+TGG - chr4_1:71395166-71395185 Msa0569500:intron 20.0%
!! TAGAAAACAAGATAATAATG+AGG - chr4_1:71395279-71395298 Msa0569500:intron 20.0%
!!! TGTAAATTTTCAGAAAGATT+TGG - chr4_1:71395432-71395451 Msa0569500:intron 20.0%
!! TTGTATTCAGATTGAAAATA+AGG - chr4_1:71395513-71395532 Msa0569500:intron 20.0%
!! AAAATAAGGAAAATTCTCAA+GGG - chr4_1:71395527-71395546 Msa0569500:intron 20.0%
!!! ATATCAGAAAAGTGTTAAAG+GGG + chr4_1:71387467-71387486 None:intergenic 25.0%
!!! GAATATCAGAAAAGTGTTAA+AGG + chr4_1:71387469-71387488 None:intergenic 25.0%
!! TTTTCCTTTATATTGCTTTG+TGG - chr4_1:71387608-71387627 Msa0569500:CDS 25.0%
! TTGAAATGAGTGTTAAAGTT+TGG - chr4_1:71387723-71387742 Msa0569500:CDS 25.0%
!!! GCTTTTGAATTGATTTGAAA+TGG - chr4_1:71387765-71387784 Msa0569500:CDS 25.0%
!!! TTTGAATTGATTTGAAATGG+TGG - chr4_1:71387768-71387787 Msa0569500:CDS 25.0%
!!! TTGAATTGATTTGAAATGGT+GGG - chr4_1:71387769-71387788 Msa0569500:CDS 25.0%
! TTAGAATATGAAGAAGAAAG+TGG - chr4_1:71387818-71387837 Msa0569500:CDS 25.0%
!!! GTTGATGTTACCTTTTTTAT+AGG - chr4_1:71388334-71388353 Msa0569500:CDS 25.0%
! CTAACATTTGCCTATAAAAA+AGG + chr4_1:71388347-71388366 None:intergenic 25.0%
!! TTTTTATAGGCAAATGTTAG+TGG - chr4_1:71388347-71388366 Msa0569500:CDS 25.0%
!!! GTTAGTGGTTATTTTATTAG+GGG - chr4_1:71388362-71388381 Msa0569500:CDS 25.0%
!!! TTAGTGGTTATTTTATTAGG+GGG - chr4_1:71388363-71388382 Msa0569500:CDS 25.0%
! GACATAACTGTGTATTTAAA+AGG + chr4_1:71388747-71388766 None:intergenic 25.0%
! AACATATGGTCAATAAGTTA+AGG + chr4_1:71388972-71388991 None:intergenic 25.0%
! TTCCATAATAATTTAGCCAA+AGG + chr4_1:71389005-71389024 None:intergenic 25.0%
! AATAAGCTGATAACAACTTA+GGG + chr4_1:71389644-71389663 None:intergenic 25.0%
! AAATAAGCTGATAACAACTT+AGG + chr4_1:71389645-71389664 None:intergenic 25.0%
! AAGCTATTCTGGATAATTTA+TGG - chr4_1:71389669-71389688 Msa0569500:intron 25.0%
! AAGTCAAACTTCTTTCATAT+AGG + chr4_1:71389708-71389727 None:intergenic 25.0%
! ATTAATCTGTTTATCCAAAC+AGG - chr4_1:71389777-71389796 Msa0569500:intron 25.0%
! TTAATCTGTTTATCCAAACA+GGG - chr4_1:71389778-71389797 Msa0569500:intron 25.0%
!! TTCTTCTGACATTTTAAACA+TGG + chr4_1:71390017-71390036 None:intergenic 25.0%
!! ATGTTGACTAAATATCATGA+AGG + chr4_1:71390088-71390107 None:intergenic 25.0%
! ACTTTATGAACAATTCAGTT+CGG + chr4_1:71390324-71390343 None:intergenic 25.0%
! ACTGAATTGTTCATAAAGTT+TGG - chr4_1:71390325-71390344 Msa0569500:intron 25.0%
!!! TTCTAATATTCGATTTGGTT+CGG + chr4_1:71390501-71390520 None:intergenic 25.0%
!! AACAGTTCTAATATTCGATT+TGG + chr4_1:71390506-71390525 None:intergenic 25.0%
! AAAAAAACAAAAAACTGAGC+TGG - chr4_1:71390529-71390548 Msa0569500:five_prime_UTR 25.0%
!!! TAGTTATCAGTTTTGTTTCA+CGG + chr4_1:71390556-71390575 None:intergenic 25.0%
! TGAAACAAAACTGATAACTA+GGG - chr4_1:71390556-71390575 Msa0569500:five_prime_UTR 25.0%
! CAATCAACTGAAATATAGTA+AGG + chr4_1:71390684-71390703 None:intergenic 25.0%
! ATACAAAGATAGGTATAAGA+TGG + chr4_1:71391253-71391272 None:intergenic 25.0%
! AGAAGAATTCATACAAAGAT+AGG + chr4_1:71391263-71391282 None:intergenic 25.0%
! TTGAGACACATAATATAAGA+AGG + chr4_1:71391380-71391399 None:intergenic 25.0%
! CTTATATTATGTGTCTCAAT+TGG - chr4_1:71391381-71391400 Msa0569500:intron 25.0%
! CAAATAATGAATGAAGCAAA+AGG + chr4_1:71391461-71391480 None:intergenic 25.0%
! TACTAAATGGAAGAAAGATT+GGG + chr4_1:71391539-71391558 None:intergenic 25.0%
! ATACTAAATGGAAGAAAGAT+TGG + chr4_1:71391540-71391559 None:intergenic 25.0%
! AATAATAGGGTTATCATACT+AGG - chr4_1:71392406-71392425 Msa0569500:intron 25.0%
! TATATATGCTGATATGTAGT+AGG + chr4_1:71392534-71392553 None:intergenic 25.0%
!!! TTCTTAGTCTTGTTAAATAG+CGG - chr4_1:71392774-71392793 Msa0569500:intron 25.0%
! TAGTAAACTTTCTTGCAAAA+AGG + chr4_1:71392957-71392976 None:intergenic 25.0%
!! TTTTTGCAAGAAAGTTTACT+AGG - chr4_1:71392956-71392975 Msa0569500:intron 25.0%
! ATGGTAAGTTCATATATCAT+AGG - chr4_1:71393003-71393022 Msa0569500:intron 25.0%
! TGGTAAGTTCATATATCATA+GGG - chr4_1:71393004-71393023 Msa0569500:intron 25.0%
! ATAAGTGCTTATCATATAAG+TGG + chr4_1:71393289-71393308 None:intergenic 25.0%
!!! CTTATTTTTTGATTCTCTGT+TGG - chr4_1:71393367-71393386 Msa0569500:intron 25.0%
! TTAACTGAAATCTCCTAAAA+CGG + chr4_1:71393398-71393417 None:intergenic 25.0%
! TACTTAGTAAAGAAGTAAGA+TGG - chr4_1:71393468-71393487 Msa0569500:five_prime_UTR 25.0%
!!! TATTGTCTTTACTTTTGTTC+AGG + chr4_1:71393905-71393924 None:intergenic 25.0%
! AGACAATACATTAAAACACT+TGG - chr4_1:71393917-71393936 Msa0569500:intron 25.0%
! AACAATACAACGTAAGAAAT+GGG + chr4_1:71394388-71394407 None:intergenic 25.0%
! GATGTAATAAAAAAGTGAAG+TGG + chr4_1:71394523-71394542 None:intergenic 25.0%
! TCATACATTAAATAACTCCT+AGG - chr4_1:71394611-71394630 Msa0569500:intron 25.0%
! CTAAAAATATACACATACCT+AGG + chr4_1:71394631-71394650 None:intergenic 25.0%
!!! ATATGTTTTTTCTTCATGGA+AGG - chr4_1:71395170-71395189 Msa0569500:intron 25.0%
!!! TATGTTTTTTCTTCATGGAA+GGG - chr4_1:71395171-71395190 Msa0569500:intron 25.0%
! GAAAATAAGGAAAATTCTCA+AGG - chr4_1:71395526-71395545 Msa0569500:intron 25.0%
! AAATAAGGAAAATTCTCAAG+GGG - chr4_1:71395528-71395547 Msa0569500:intron 25.0%
!! AACCAACTTTTGTTCATATT+CGG + chr4_1:71396219-71396238 None:intergenic 25.0%
!!! AGAAAGAATAAAGCCTTTTT+TGG + chr4_1:71396348-71396367 None:intergenic 25.0%
! TCTCATTGGAACAAAAATAT+TGG - chr4_1:71396404-71396423 Msa0569500:five_prime_UTR 25.0%
! ATTGGAACAAAAATATTGGA+AGG - chr4_1:71396408-71396427 Msa0569500:five_prime_UTR 25.0%
! TTGGAACAAAAATATTGGAA+GGG - chr4_1:71396409-71396428 Msa0569500:five_prime_UTR 25.0%
! TATGAAAAATTGTCAATAGG+AGG + chr4_1:71396741-71396760 None:intergenic 25.0%
!! GTGAAAGTGTTGCTATTATT+TGG + chr4_1:71387516-71387535 None:intergenic 30.0%
CTATCCACAAAGCAATATAA+AGG + chr4_1:71387615-71387634 None:intergenic 30.0%
!!! GGTTGGTTTTAGATTCAAAA+GGG - chr4_1:71387790-71387809 Msa0569500:CDS 30.0%
!! GAAGGTTTTTGCTTTGATTT+TGG - chr4_1:71387860-71387879 Msa0569500:CDS 30.0%
ATGAAGAGAAAAGCAATCTT+AGG + chr4_1:71387990-71388009 None:intergenic 30.0%
! ATCTGGAAAAAGAAGCATAT+AGG + chr4_1:71388265-71388284 None:intergenic 30.0%
AAATACACAGTTATGTCCTT+TGG - chr4_1:71388750-71388769 Msa0569500:CDS 30.0%
AATACACAGTTATGTCCTTT+GGG - chr4_1:71388751-71388770 Msa0569500:CDS 30.0%
TTAAAAGCTAGCTATCAAGA+GGG + chr4_1:71388832-71388851 None:intergenic 30.0%
! TGATAAGTATCAAAGCACTT+GGG + chr4_1:71388865-71388884 None:intergenic 30.0%
! ATGATAAGTATCAAAGCACT+TGG + chr4_1:71388866-71388885 None:intergenic 30.0%
CACCTTTGGCTAAATTATTA+TGG - chr4_1:71389000-71389019 Msa0569500:intron 30.0%
!! TTTATATTGCATTTTCAGGG+AGG - chr4_1:71389142-71389161 Msa0569500:intron 30.0%
TCAAGTTAATGATAGCATAC+AGG - chr4_1:71389252-71389271 Msa0569500:intron 30.0%
ATAAGCTGTTATAGTTGACT+AGG - chr4_1:71389356-71389375 Msa0569500:intron 30.0%
AGATCTAGAGATTAATGAGT+TGG - chr4_1:71389422-71389441 Msa0569500:intron 30.0%
! TTGTTGTTGTAGTTGACTTA+GGG - chr4_1:71389528-71389547 Msa0569500:intron 30.0%
GAGATTGAATAAGAGAACTT+AGG - chr4_1:71389599-71389618 Msa0569500:intron 30.0%
TAATCTGTTTATCCAAACAG+GGG - chr4_1:71389779-71389798 Msa0569500:intron 30.0%
TATTGTTACATTCCTTTCCT+TGG - chr4_1:71389804-71389823 Msa0569500:intron 30.0%
AGACTATAGAACTTCATAGT+TGG + chr4_1:71389843-71389862 None:intergenic 30.0%
CATGTGATAAATAAACACAC+AGG + chr4_1:71389874-71389893 None:intergenic 30.0%
! TGATCTTTTTGCAGATAGAT+TGG - chr4_1:71390107-71390126 Msa0569500:intron 30.0%
! GATCTTTTTGCAGATAGATT+GGG - chr4_1:71390108-71390127 Msa0569500:intron 30.0%
! ATCTTTTTGCAGATAGATTG+GGG - chr4_1:71390109-71390128 Msa0569500:intron 30.0%
GTGAAACAAAACTGATAACT+AGG - chr4_1:71390555-71390574 Msa0569500:five_prime_UTR 30.0%
CCATATAATTAAGCAACGTA+TGG + chr4_1:71390616-71390635 None:intergenic 30.0%
CCATACGTTGCTTAATTATA+TGG - chr4_1:71390613-71390632 Msa0569500:five_prime_UTR 30.0%
AGACACATAATATAAGAAGG+AGG + chr4_1:71391377-71391396 None:intergenic 30.0%
! AAAACCATGAGAGTATATGA+TGG + chr4_1:71391485-71391504 None:intergenic 30.0%
AAGAGACAAGCACAAATATA+TGG + chr4_1:71391571-71391590 None:intergenic 30.0%
ATTGGTACATGATGTCAATT+AGG - chr4_1:71391818-71391837 Msa0569500:intron 30.0%
CATGTGTTCATATAATTCCT+AGG + chr4_1:71391846-71391865 None:intergenic 30.0%
!! GAATGGTACTTGATAATGAT+AGG - chr4_1:71392474-71392493 Msa0569500:intron 30.0%
TGTCAAGAAGAAAAAAAGCA+AGG - chr4_1:71392581-71392600 Msa0569500:intron 30.0%
! ATTCAGATTTTATTAGGAGC+AGG + chr4_1:71392647-71392666 None:intergenic 30.0%
ATCTTTCATTAGTTGACTGA+TGG + chr4_1:71392684-71392703 None:intergenic 30.0%
! TTTAGTTTCTTCGGTTTGAT+TGG - chr4_1:71393084-71393103 Msa0569500:five_prime_UTR 30.0%
! TCACAAAACAAAAGCATAGA+GGG + chr4_1:71393860-71393879 None:intergenic 30.0%
! ATCACAAAACAAAAGCATAG+AGG + chr4_1:71393861-71393880 None:intergenic 30.0%
TGGCAAAATTAGTGAAAATG+AGG - chr4_1:71393937-71393956 Msa0569500:intron 30.0%
CAACAATACAACGTAAGAAA+TGG + chr4_1:71394389-71394408 None:intergenic 30.0%
GTAATAAAAAAGTGAAGTGG+AGG + chr4_1:71394520-71394539 None:intergenic 30.0%
TTGTTGCAGAAAATGAAAGT+TGG + chr4_1:71394545-71394564 None:intergenic 30.0%
TATGATATTGCAGACATTTC+AGG + chr4_1:71394596-71394615 None:intergenic 30.0%
!! TGAACTATATAAGTGTTGGT+GGG + chr4_1:71394664-71394683 None:intergenic 30.0%
!! ATGAACTATATAAGTGTTGG+TGG + chr4_1:71394665-71394684 None:intergenic 30.0%
CTAAGATTGAAAACTTCTCT+GGG + chr4_1:71394809-71394828 None:intergenic 30.0%
ACTAAGATTGAAAACTTCTC+TGG + chr4_1:71394810-71394829 None:intergenic 30.0%
TTAAACCATTGCTTGGTATT+TGG - chr4_1:71394981-71395000 Msa0569500:five_prime_UTR 30.0%
TAAACCATTGCTTGGTATTT+GGG - chr4_1:71394982-71395001 Msa0569500:five_prime_UTR 30.0%
TAAACAAGATTACCAAGTTC+AGG + chr4_1:71395019-71395038 None:intergenic 30.0%
! AATCTTGTTTATGTAATGCC+AGG - chr4_1:71395028-71395047 Msa0569500:five_prime_UTR 30.0%
! TTGCAATTTATTGTTGCTTG+AGG - chr4_1:71395249-71395268 Msa0569500:intron 30.0%
! ATGAGGTAATGATTCCTTTT+AGG - chr4_1:71395296-71395315 Msa0569500:intron 30.0%
!! AATGATTCCTTTTAGGAAGT+TGG - chr4_1:71395303-71395322 Msa0569500:intron 30.0%
!! ATGATTCCTTTTAGGAAGTT+GGG - chr4_1:71395304-71395323 Msa0569500:intron 30.0%
!! TTTTAGGAAGTTGGGTTTTA+GGG - chr4_1:71395312-71395331 Msa0569500:intron 30.0%
TAGATTAGAGGTTCCTAATA+TGG - chr4_1:71395372-71395391 Msa0569500:intron 30.0%
AGATTAGAGGTTCCTAATAT+GGG - chr4_1:71395373-71395392 Msa0569500:intron 30.0%
AGTATGTTCAATGGAATTAG+AGG - chr4_1:71395555-71395574 Msa0569500:intron 30.0%
! AATATTGATAACACTGCCAT+CGG + chr4_1:71395887-71395906 None:intergenic 30.0%
! GCAAAATTATCATCTTTTCG+AGG - chr4_1:71396189-71396208 Msa0569500:five_prime_UTR 30.0%
!! AATTATCATCTTTTCGAGGT+TGG - chr4_1:71396193-71396212 Msa0569500:five_prime_UTR 30.0%
!! TTTTGAGAAGGTTTTTCATG+AGG + chr4_1:71396321-71396340 None:intergenic 30.0%
!!! TTTTTTGGCTTGTTTTGAGA+AGG + chr4_1:71396333-71396352 None:intergenic 30.0%
TTCTCAAAACAAGCCAAAAA+AGG - chr4_1:71396332-71396351 Msa0569500:five_prime_UTR 30.0%
TGGAACAAAAATATTGGAAG+GGG - chr4_1:71396410-71396429 Msa0569500:five_prime_UTR 30.0%
ATAAACATTGCTGAACCATT+AGG + chr4_1:71396453-71396472 None:intergenic 30.0%
! GAATATTGAACATGCTTTTG+CGG - chr4_1:71396539-71396558 Msa0569500:five_prime_UTR 30.0%
! AATATTGAACATGCTTTTGC+GGG - chr4_1:71396540-71396559 Msa0569500:five_prime_UTR 30.0%
!! TTGCAAGAACTTTTGAAGAA+AGG - chr4_1:71396696-71396715 Msa0569500:five_prime_UTR 30.0%
!! AACTTTTGAAGAAAGGAAGA+AGG - chr4_1:71396703-71396722 Msa0569500:five_prime_UTR 30.0%
TCTTTATTAGGCTATTGGGT+TGG - chr4_1:71387660-71387679 Msa0569500:CDS 35.0%
!! ATTGATTTGAAATGGTGGGT+TGG - chr4_1:71387773-71387792 Msa0569500:CDS 35.0%
!!! GGGTTGGTTTTAGATTCAAA+AGG - chr4_1:71387789-71387808 Msa0569500:CDS 35.0%
!! GGTTTTTGCTTTGATTTTGG+TGG - chr4_1:71387863-71387882 Msa0569500:CDS 35.0%
!! TTTTGCTTTGATTTTGGTGG+TGG - chr4_1:71387866-71387885 Msa0569500:CDS 35.0%
!! GTTTGTTGTTTATGCAGATG+CGG - chr4_1:71387904-71387923 Msa0569500:CDS 35.0%
! ATGCGGTATACTCATGTTTT+GGG - chr4_1:71387921-71387940 Msa0569500:CDS 35.0%
!! TTGCTTTTCTCTTCATTGCA+AGG - chr4_1:71387994-71388013 Msa0569500:CDS 35.0%
TTCTCTTCATTGCAAGGAAT+AGG - chr4_1:71388000-71388019 Msa0569500:CDS 35.0%
! GTGTGTACTTGGTGATTAAT+AGG - chr4_1:71388170-71388189 Msa0569500:CDS 35.0%
! TGTACTTGGTGATTAATAGG+AGG - chr4_1:71388173-71388192 Msa0569500:CDS 35.0%
!! AGTGTTACAAGTTCTGAATC+TGG + chr4_1:71388282-71388301 None:intergenic 35.0%
AAGAGGAATATTACGAACGA+GGG + chr4_1:71388425-71388444 None:intergenic 35.0%
GCATTGTCGATAATAGTGAA+TGG - chr4_1:71388483-71388502 Msa0569500:CDS 35.0%
ATCATTGATCAGTACAGTGT+AGG - chr4_1:71388559-71388578 Msa0569500:CDS 35.0%
TCATTGATCAGTACAGTGTA+GGG - chr4_1:71388560-71388579 Msa0569500:CDS 35.0%
AGTGTAGGGACAATTGTTTA+TGG - chr4_1:71388574-71388593 Msa0569500:CDS 35.0%
! CAAAAGCGCAAAAGACTAAA+AGG + chr4_1:71388614-71388633 None:intergenic 35.0%
! TTTTGCGCTTTTGTATTCTC+TGG - chr4_1:71388621-71388640 Msa0569500:CDS 35.0%
ATACACAGTTATGTCCTTTG+GGG - chr4_1:71388752-71388771 Msa0569500:CDS 35.0%
TGCTCGATTGAGTATTTAAG+CGG - chr4_1:71388796-71388815 Msa0569500:CDS 35.0%
CTTAAAAGCTAGCTATCAAG+AGG + chr4_1:71388833-71388852 None:intergenic 35.0%
!!! TGATAGCTAGCTTTTAAGAG+AGG - chr4_1:71388835-71388854 Msa0569500:CDS 35.0%
!!! GATAGCTAGCTTTTAAGAGA+GGG - chr4_1:71388836-71388855 Msa0569500:CDS 35.0%
AAGGTGAGTCTCTTAACATA+TGG + chr4_1:71388986-71389005 None:intergenic 35.0%
TATGTTAAGAGACTCACCTT+TGG - chr4_1:71388986-71389005 Msa0569500:intron 35.0%
TGCTAGTTGTTGAAATGTTG+AGG - chr4_1:71389097-71389116 Msa0569500:intron 35.0%
GTTTCAAACAAAGAGAGAAG+AGG + chr4_1:71389280-71389299 None:intergenic 35.0%
CATAAGATAGCAAATGGACA+TGG + chr4_1:71389325-71389344 None:intergenic 35.0%
CCAACACATAAGATAGCAAA+TGG + chr4_1:71389331-71389350 None:intergenic 35.0%
!! CCATTTGCTATCTTATGTGT+TGG - chr4_1:71389328-71389347 Msa0569500:intron 35.0%
TGTTATAGTTGACTAGGTAG+AGG - chr4_1:71389362-71389381 Msa0569500:intron 35.0%
! GTTGTTGTTGTAGTTGACTT+AGG - chr4_1:71389527-71389546 Msa0569500:intron 35.0%
TGTAACAATAAACCCCTGTT+TGG + chr4_1:71389794-71389813 None:intergenic 35.0%
ATGTCTAAGTAAAATGCGCT+CGG + chr4_1:71390155-71390174 None:intergenic 35.0%
AAAACAAAGCGGTCATTTAG+AGG + chr4_1:71390190-71390209 None:intergenic 35.0%
TATCTGAGAGGAAAACAAAG+CGG + chr4_1:71390201-71390220 None:intergenic 35.0%
AAGTACTCTCCACTTACTAT+AGG - chr4_1:71390268-71390287 Msa0569500:intron 35.0%
ATGAAGAGTCCTATAGTAAG+TGG + chr4_1:71390280-71390299 None:intergenic 35.0%
ACTTACTATAGGACTCTTCA+TGG - chr4_1:71390279-71390298 Msa0569500:intron 35.0%
AAACCAAATGATTCTTTGCG+AGG - chr4_1:71390452-71390471 Msa0569500:intron 35.0%
GTGTAGCTGAAGTTGTATAA+AGG + chr4_1:71390727-71390746 None:intergenic 35.0%
AGGTCGTTACAATCCAAAAA+TGG - chr4_1:71391103-71391122 Msa0569500:intron 35.0%
! GGAATAACTGGATCCATTTT+TGG + chr4_1:71391119-71391138 None:intergenic 35.0%
CAGTTATAGACTGGAATAAC+TGG + chr4_1:71391131-71391150 None:intergenic 35.0%
CAGTTATTCCAGTCTATAAC+TGG - chr4_1:71391129-71391148 Msa0569500:intron 35.0%
AGGTATAAGATGGCAATCTT+TGG + chr4_1:71391243-71391262 None:intergenic 35.0%
TTGTATGAATTCTTCTGCAG+TGG - chr4_1:71391267-71391286 Msa0569500:five_prime_UTR 35.0%
TGTATGAATTCTTCTGCAGT+GGG - chr4_1:71391268-71391287 Msa0569500:five_prime_UTR 35.0%
TTGTCCATCATATACTCTCA+TGG - chr4_1:71391478-71391497 Msa0569500:intron 35.0%
ATGATGTCAATTAGGTTCCT+AGG - chr4_1:71391826-71391845 Msa0569500:intron 35.0%
GTTTGAACATAGTGTTCATC+TGG + chr4_1:71391941-71391960 None:intergenic 35.0%
ACACTATGTTCAAACATTGC+TGG - chr4_1:71391946-71391965 Msa0569500:five_prime_UTR 35.0%
ATGCAATAGTGTTCACAGAA+AGG + chr4_1:71391989-71392008 None:intergenic 35.0%
TCTTCCCAAATCTAGCAAAA+AGG - chr4_1:71392178-71392197 Msa0569500:intron 35.0%
!! TTCGTGTTAGTTCTTTTTCG+AGG + chr4_1:71392204-71392223 None:intergenic 35.0%
TCTGAGAACTTATAAGTCAC+TGG + chr4_1:71392292-71392311 None:intergenic 35.0%
! TCAAGAAAGTGATTTTGCAG+TGG + chr4_1:71392366-71392385 None:intergenic 35.0%
! AAAAGCAAGGTGTGAGATTT+TGG - chr4_1:71392594-71392613 Msa0569500:intron 35.0%
! TTTTATTAGGAGCAGGATCA+AGG + chr4_1:71392640-71392659 None:intergenic 35.0%
!! TGCTTTGAAGCTTCTTAACA+TGG - chr4_1:71392984-71393003 Msa0569500:intron 35.0%
!! CAGTCTAAAGGTGTTTATGT+CGG + chr4_1:71393128-71393147 None:intergenic 35.0%
AGCTCTTTCAAACAGTCTAA+AGG + chr4_1:71393140-71393159 None:intergenic 35.0%
AAAGTCGAACTGTGTTTCAT+AGG + chr4_1:71393230-71393249 None:intergenic 35.0%
AACAAAATGCTTATTGCCAG+TGG - chr4_1:71393421-71393440 Msa0569500:intron 35.0%
GAGTGAGACATTGTTTATGT+CGG + chr4_1:71393712-71393731 None:intergenic 35.0%
ACTCGCAACATGAATTACTT+GGG - chr4_1:71393728-71393747 Msa0569500:intron 35.0%
TGAATTACTTGGGCTATGTT+TGG - chr4_1:71393738-71393757 Msa0569500:intron 35.0%
! ACAAAACAAAAGCATAGAGG+GGG + chr4_1:71393858-71393877 None:intergenic 35.0%
! CACAAAACAAAAGCATAGAG+GGG + chr4_1:71393859-71393878 None:intergenic 35.0%
ACTTAATATTTGCACGCAAC+AGG - chr4_1:71394356-71394375 Msa0569500:intron 35.0%
CGTTGTATTGTTGTATGCAT+TGG - chr4_1:71394396-71394415 Msa0569500:intron 35.0%
ATAAAAAAGTGAAGTGGAGG+TGG + chr4_1:71394517-71394536 None:intergenic 35.0%
TATTGCAGACATTTCAGGAT+TGG + chr4_1:71394591-71394610 None:intergenic 35.0%
GACATGAATCAAGAGGATAA+GGG + chr4_1:71394733-71394752 None:intergenic 35.0%
TCATCTGGTAGATGAATAAG+CGG + chr4_1:71394755-71394774 None:intergenic 35.0%
AATTAGGTACCTTGAAACTG+TGG + chr4_1:71394786-71394805 None:intergenic 35.0%
! TGAAAACTTCTCTGGGAATT+AGG + chr4_1:71394802-71394821 None:intergenic 35.0%
! TTGCATCTTCTGAGAAAGTT+TGG - chr4_1:71394855-71394874 Msa0569500:intron 35.0%
TTGAGTGTTAAACCATTGCT+TGG - chr4_1:71394974-71394993 Msa0569500:five_prime_UTR 35.0%
TCCAAGATTGTTCTATCCTT+TGG - chr4_1:71395107-71395126 Msa0569500:intron 35.0%
ACCAAAGGATAGAACAATCT+TGG + chr4_1:71395111-71395130 None:intergenic 35.0%
TCGCAAACAATTTCAAACAC+AGG + chr4_1:71395136-71395155 None:intergenic 35.0%
GAAATTGTTTGCGATTTCGA+TGG - chr4_1:71395142-71395161 Msa0569500:intron 35.0%
CTAAAACCCAACTTCCTAAA+AGG + chr4_1:71395313-71395332 None:intergenic 35.0%
!! CTTTTAGGAAGTTGGGTTTT+AGG - chr4_1:71395311-71395330 Msa0569500:intron 35.0%
TAGGAACCTCTAATCTAACT+TGG + chr4_1:71395369-71395388 None:intergenic 35.0%
TCTCTTGATCTAGGAAACAA+TGG + chr4_1:71395406-71395425 None:intergenic 35.0%
ACAGAATCATCTCTTGATCT+AGG + chr4_1:71395415-71395434 None:intergenic 35.0%
!!! GAAAGATTTGGTGCTTTTGA+AGG - chr4_1:71395444-71395463 Msa0569500:intron 35.0%
!! AAGAGCATTCCTTGTTCAAA+TGG - chr4_1:71395471-71395490 Msa0569500:intron 35.0%
ACATTTGAGCCATTTGAACA+AGG + chr4_1:71395483-71395502 None:intergenic 35.0%
ATGGCTCAAATGTATAAGCT+TGG - chr4_1:71395490-71395509 Msa0569500:intron 35.0%
! AATGGAATTAGAGGTTGATC+AGG - chr4_1:71395564-71395583 Msa0569500:intron 35.0%
!! AGAGTCTTGGTGGTTATTTT+TGG - chr4_1:71395668-71395687 Msa0569500:intron 35.0%
!!! GAGTCTTGGTGGTTATTTTT+GGG - chr4_1:71395669-71395688 Msa0569500:intron 35.0%
!!! AGTCTTGGTGGTTATTTTTG+GGG - chr4_1:71395670-71395689 Msa0569500:intron 35.0%
!! GGTGGCTTTAAACATATCTT+TGG - chr4_1:71395691-71395710 Msa0569500:intron 35.0%
AAGGATCTAGTGCAATTGAT+GGG - chr4_1:71396013-71396032 Msa0569500:intron 35.0%
TATTGATCAGCAACACAACA+CGG - chr4_1:71396047-71396066 Msa0569500:intron 35.0%
GCTTTGCATTCTTTATCTCA+TGG + chr4_1:71396113-71396132 None:intergenic 35.0%
! TCTTCTTTAGGAACTTGCAA+AGG + chr4_1:71396258-71396277 None:intergenic 35.0%
! TCTTTCTTTTGCTCTCGTAT+TGG - chr4_1:71396361-71396380 Msa0569500:five_prime_UTR 35.0%
! CTTTCTTTTGCTCTCGTATT+GGG - chr4_1:71396362-71396381 Msa0569500:five_prime_UTR 35.0%
GGTTATGGTTTCAAATATCC+AGG - chr4_1:71396579-71396598 Msa0569500:five_prime_UTR 35.0%
AAATATCCAGGAGCAAAATC+TGG - chr4_1:71396591-71396610 Msa0569500:five_prime_UTR 35.0%
TCCCTCTTTGTACTTCAAAA+TGG - chr4_1:71396615-71396634 Msa0569500:five_prime_UTR 35.0%
!!! GCCATTTTGAAGTACAAAGA+GGG + chr4_1:71396619-71396638 None:intergenic 35.0%
TCTAGATTCCTTCCAAACAA+AGG + chr4_1:71396649-71396668 None:intergenic 35.0%
TTGCAAGTTAAGTCTTTGCA+GGG + chr4_1:71396682-71396701 None:intergenic 35.0%
GCTTGTAAACACATTTAAGC+AGG + chr4_1:71396775-71396794 None:intergenic 35.0%
TGAGTGTTAAGAGTGGAACA+AGG + chr4_1:71387436-71387455 None:intergenic 40.0%
TGTAGAGTGAGTGTTAAGAG+TGG + chr4_1:71387443-71387462 None:intergenic 40.0%
!! ATTAGGCTATTGGGTTGGTA+TGG - chr4_1:71387665-71387684 Msa0569500:CDS 40.0%
TTGGATCTTCTACTTCTGAG+TGG - chr4_1:71387693-71387712 Msa0569500:CDS 40.0%
AGAAAGTGGTTCAGCAGAAA+TGG - chr4_1:71387832-71387851 Msa0569500:CDS 40.0%
TCAGCAGAAATGGAAGAAGA+AGG - chr4_1:71387842-71387861 Msa0569500:CDS 40.0%
! GATGCGGTATACTCATGTTT+TGG - chr4_1:71387920-71387939 Msa0569500:CDS 40.0%
!! GAATAGGCTTCCTTTGGAAT+TGG - chr4_1:71388016-71388035 Msa0569500:CDS 40.0%
!! GCTTCCTTTGGAATTGGTTT+GGG - chr4_1:71388022-71388041 Msa0569500:CDS 40.0%
! TGGTTTGGGATGCATTCTTT+AGG - chr4_1:71388036-71388055 Msa0569500:CDS 40.0%
! GGTTTGGGATGCATTCTTTA+GGG - chr4_1:71388037-71388056 Msa0569500:CDS 40.0%
AATATTACGAACGAGGGTCT+AGG + chr4_1:71388419-71388438 None:intergenic 40.0%
CAAGAGGAATATTACGAACG+AGG + chr4_1:71388426-71388445 None:intergenic 40.0%
TAACATCAACACGTCCTTGA+AGG + chr4_1:71388456-71388475 None:intergenic 40.0%
TCCTTCTGATAGAACTTCAC+AGG + chr4_1:71388714-71388733 None:intergenic 40.0%
!! AGATTCTAGTTCATCCCCAA+AGG + chr4_1:71388769-71388788 None:intergenic 40.0%
GATTGAGTATTTAAGCGGCT+TGG - chr4_1:71388801-71388820 Msa0569500:CDS 40.0%
AAATGTTGTAATGGCAAGCG+AGG + chr4_1:71388929-71388948 None:intergenic 40.0%
GAAATGTTGAGGTGCAGTAA+CGG - chr4_1:71389108-71389127 Msa0569500:intron 40.0%
! TCTCGATTTTCGTTCATCCT+AGG - chr4_1:71389176-71389195 Msa0569500:intron 40.0%
! AAGCTTTATCCCACTAAGTG+GGG + chr4_1:71389506-71389525 None:intergenic 40.0%
! CAAGCTTTATCCCACTAAGT+GGG + chr4_1:71389507-71389526 None:intergenic 40.0%
!!! GCTTTGTTTTCCTCTCAGAT+AGG - chr4_1:71390200-71390219 Msa0569500:intron 40.0%
! TTTTCCTCTCAGATAGGTGA+GGG - chr4_1:71390206-71390225 Msa0569500:intron 40.0%
GGGGTAAACTATTAGTGGTT+TGG + chr4_1:71390361-71390380 None:intergenic 40.0%
AGTCCTCGCAAAGAATCATT+TGG + chr4_1:71390458-71390477 None:intergenic 40.0%
!!! CATCGACTAGTTTTGTCGAT+AGG - chr4_1:71390767-71390786 Msa0569500:five_prime_UTR 40.0%
! GAAATGTGCTAGAGAGCATA+AGG + chr4_1:71390813-71390832 None:intergenic 40.0%
! CCTTTTCTCCAGTTATAGAC+TGG + chr4_1:71391140-71391159 None:intergenic 40.0%
CCAGTCTATAACTGGAGAAA+AGG - chr4_1:71391137-71391156 Msa0569500:intron 40.0%
TAACTGGAGAAAAGGATCTC+AGG - chr4_1:71391145-71391164 Msa0569500:intron 40.0%
ACTTGATCCCTCCAAAATTC+GGG + chr4_1:71391654-71391673 None:intergenic 40.0%
GACTTGATCCCTCCAAAATT+CGG + chr4_1:71391655-71391674 None:intergenic 40.0%
TGGTATACAGTTGTGGATCT+TGG + chr4_1:71391921-71391940 None:intergenic 40.0%
GTTCATCTGGTATACAGTTG+TGG + chr4_1:71391928-71391947 None:intergenic 40.0%
! GAGGCCTTTTTGCTAGATTT+GGG + chr4_1:71392185-71392204 None:intergenic 40.0%
ATCAGTGACACATACTGCAT+GGG - chr4_1:71392225-71392244 Msa0569500:intron 40.0%
AGACTGAATACCGAAGAGAA+TGG - chr4_1:71392899-71392918 Msa0569500:five_prime_UTR 40.0%
TGCTTGTACACCATTCTCTT+CGG + chr4_1:71392912-71392931 None:intergenic 40.0%
AAGAGAATGGTGTACAAGCA+AGG - chr4_1:71392912-71392931 Msa0569500:five_prime_UTR 40.0%
AGAGAATGGTGTACAAGCAA+GGG - chr4_1:71392913-71392932 Msa0569500:five_prime_UTR 40.0%
TCTTGCAAAAAGGAAGCAAG+TGG + chr4_1:71392947-71392966 None:intergenic 40.0%
CTGTGTTTCATAGGCTATCT+TGG + chr4_1:71393221-71393240 None:intergenic 40.0%
CACTCGCAACATGAATTACT+TGG - chr4_1:71393727-71393746 Msa0569500:intron 40.0%
! GGCTATGTTTGGTTCAAATG+AGG - chr4_1:71393749-71393768 Msa0569500:intron 40.0%
TTCAAATGAGGTGATGTGCT+TGG - chr4_1:71393761-71393780 Msa0569500:intron 40.0%
! CAAAACAAAAGCATAGAGGG+GGG + chr4_1:71393857-71393876 None:intergenic 40.0%
! CATGCATCTATCTGTCACTT+TGG + chr4_1:71394425-71394444 None:intergenic 40.0%
GAATCAAGAGGATAAGGGTA+GGG + chr4_1:71394728-71394747 None:intergenic 40.0%
TGAATCAAGAGGATAAGGGT+AGG + chr4_1:71394729-71394748 None:intergenic 40.0%
GGACATGAATCAAGAGGATA+AGG + chr4_1:71394734-71394753 None:intergenic 40.0%
ATAAGCGGACATGAATCAAG+AGG + chr4_1:71394740-71394759 None:intergenic 40.0%
ATGTGTTTGCCACAGTTTCA+AGG - chr4_1:71394774-71394793 Msa0569500:intron 40.0%
TGAACCCAAATACCAAGCAA+TGG + chr4_1:71394989-71395008 None:intergenic 40.0%
GTTCAACAGAATCCTGAACT+TGG - chr4_1:71395004-71395023 Msa0569500:five_prime_UTR 40.0%
GCTACAACAGAAACAAAACC+TGG + chr4_1:71395049-71395068 None:intergenic 40.0%
TTTCAAACACAGGTGACCAA+AGG + chr4_1:71395126-71395145 None:intergenic 40.0%
GGGATAGATTGTGTTTACCA+TGG - chr4_1:71395202-71395221 Msa0569500:intron 40.0%
TAACACACTTGAGTGAACCA+TGG + chr4_1:71395222-71395241 None:intergenic 40.0%
CTCTAATCTAACTTGGCTAG+TGG + chr4_1:71395362-71395381 None:intergenic 40.0%
CACTAGCCAAGTTAGATTAG+AGG - chr4_1:71395360-71395379 Msa0569500:intron 40.0%
AATGGTCCAGTTCCCATATT+AGG + chr4_1:71395388-71395407 None:intergenic 40.0%
! AGGGGAAGAAGTATGTTCAA+TGG - chr4_1:71395546-71395565 Msa0569500:intron 40.0%
! CTCTTTTCCTCCAAGCAATA+AGG - chr4_1:71395618-71395637 Msa0569500:intron 40.0%
TCACTATCCTTATTGCTTGG+AGG + chr4_1:71395628-71395647 None:intergenic 40.0%
! GTGTCACTATCCTTATTGCT+TGG + chr4_1:71395631-71395650 None:intergenic 40.0%
TGCATCAAGAGAAAGAGTCT+TGG - chr4_1:71395655-71395674 Msa0569500:intron 40.0%
ATCAAGAGAAAGAGTCTTGG+TGG - chr4_1:71395658-71395677 Msa0569500:intron 40.0%
ATCAATACATCACAACCGCA+GGG - chr4_1:71395755-71395774 Msa0569500:intron 40.0%
CTAGATCTTCGATGGTTACT+TGG + chr4_1:71395781-71395800 None:intergenic 40.0%
AATATTGACAGCACTGCCAT+CGG + chr4_1:71395809-71395828 None:intergenic 40.0%
ACAAGAGACGATCAAAGATC+TGG - chr4_1:71395856-71395875 Msa0569500:intron 40.0%
CGATTGTACTAGATCTTCGA+TGG + chr4_1:71395933-71395952 None:intergenic 40.0%
CGAAGATCTAGTACAATCGA+TGG - chr4_1:71395934-71395953 Msa0569500:intron 40.0%
AGATCTAGTACAATCGATGG+AGG - chr4_1:71395937-71395956 Msa0569500:intron 40.0%
CAGCATCACAAAATGATTGC+TGG - chr4_1:71395976-71395995 Msa0569500:intron 40.0%
GCTGGAACAATAGATGATCA+AGG - chr4_1:71395994-71396013 Msa0569500:intron 40.0%
CAAGGATCTAGTGCAATTGA+TGG - chr4_1:71396012-71396031 Msa0569500:intron 40.0%
GAACTGGAGAGAATGACATA+GGG - chr4_1:71396076-71396095 Msa0569500:intron 40.0%
GGCCGAATATGAACAAAAGT+TGG - chr4_1:71396214-71396233 Msa0569500:five_prime_UTR 40.0%
! GCATACACTTGGTCTTCTTT+AGG + chr4_1:71396270-71396289 None:intergenic 40.0%
AAAGAAGACCAAGTGTATGC+TGG - chr4_1:71396270-71396289 Msa0569500:five_prime_UTR 40.0%
!! ACCAAGTGTATGCTGGTTTA+TGG - chr4_1:71396277-71396296 Msa0569500:five_prime_UTR 40.0%
!! CCAAGTGTATGCTGGTTTAT+GGG - chr4_1:71396278-71396297 Msa0569500:five_prime_UTR 40.0%
!! CAAGTGTATGCTGGTTTATG+GGG - chr4_1:71396279-71396298 Msa0569500:five_prime_UTR 40.0%
AAGGGACAACAACTTCTCAT+TGG - chr4_1:71396390-71396409 Msa0569500:five_prime_UTR 40.0%
TTCTTCTGATCCGTTTCCTT+GGG - chr4_1:71396491-71396510 Msa0569500:five_prime_UTR 40.0%
CTATCAGTTTCCCAAGGAAA+CGG + chr4_1:71396504-71396523 None:intergenic 40.0%
!! GAAGGTATTGCAAGTGGTTA+TGG - chr4_1:71396564-71396583 Msa0569500:five_prime_UTR 40.0%
!!! CGCCATTTTGAAGTACAAAG+AGG + chr4_1:71396620-71396639 None:intergenic 40.0%
CTTGCAAGTTAAGTCTTTGC+AGG + chr4_1:71396683-71396702 None:intergenic 40.0%
!! TTGGGTTGGTATGGATCTGT+TGG - chr4_1:71387674-71387693 Msa0569500:CDS 45.0%
!!! TTGGTGGTGGTGCTTTGTTT+TGG - chr4_1:71387879-71387898 Msa0569500:CDS 45.0%
!!! TGGTGGTGGTGCTTTGTTTT+GGG - chr4_1:71387880-71387899 Msa0569500:CDS 45.0%
TGCAAGGAATAGGCTTCCTT+TGG - chr4_1:71388010-71388029 Msa0569500:CDS 45.0%
!! GGCTTCCTTTGGAATTGGTT+TGG - chr4_1:71388021-71388040 Msa0569500:CDS 45.0%
GCATCCCAAACCAATTCCAA+AGG + chr4_1:71388029-71388048 None:intergenic 45.0%
TGTGTGTGTGTGTGTGTACT+TGG - chr4_1:71388159-71388178 Msa0569500:CDS 45.0%
AGGTAACATCAACGCACTAC+CGG + chr4_1:71388327-71388346 None:intergenic 45.0%
ATCAACACGTCCTTGAAGGA+GGG + chr4_1:71388452-71388471 None:intergenic 45.0%
GCCTGTGAAGTTCTATCAGA+AGG - chr4_1:71388710-71388729 Msa0569500:CDS 45.0%
! ATTTTCGTTCATCCTAGGCC+AGG - chr4_1:71389181-71389200 Msa0569500:intron 45.0%
! TTTTCGTTCATCCTAGGCCA+GGG - chr4_1:71389182-71389201 Msa0569500:intron 45.0%
TTTATCCCACTAAGTGGGGT+CGG + chr4_1:71389502-71389521 None:intergenic 45.0%
! CCAAGCTTTATCCCACTAAG+TGG + chr4_1:71389508-71389527 None:intergenic 45.0%
CCACTTAGTGGGATAAAGCT+TGG - chr4_1:71389505-71389524 Msa0569500:intron 45.0%
CCACACTTGAATCCAAGGAA+AGG + chr4_1:71389819-71389838 None:intergenic 45.0%
CCTTTCCTTGGATTCAAGTG+TGG - chr4_1:71389816-71389835 Msa0569500:intron 45.0%
TTGGACCACACTTGAATCCA+AGG + chr4_1:71389824-71389843 None:intergenic 45.0%
! GTTTTCCTCTCAGATAGGTG+AGG - chr4_1:71390205-71390224 Msa0569500:intron 45.0%
TATACCCTCACCTATCTGAG+AGG + chr4_1:71390213-71390232 None:intergenic 45.0%
GACTCTTCATGGTTTCGTTC+AGG - chr4_1:71390290-71390309 Msa0569500:intron 45.0%
TCTTCATGGTTTCGTTCAGG+AGG - chr4_1:71390293-71390312 Msa0569500:intron 45.0%
CTTCATGGTTTCGTTCAGGA+GGG - chr4_1:71390294-71390313 Msa0569500:intron 45.0%
GGTTCGGGGTAAACTATTAG+TGG + chr4_1:71390366-71390385 None:intergenic 45.0%
ACCTACACATCAGCTTGGTT+CGG + chr4_1:71390387-71390406 None:intergenic 45.0%
ACTGAACCTACACATCAGCT+TGG + chr4_1:71390392-71390411 None:intergenic 45.0%
GATGTGTAGGTTCAGTGTAC+CGG - chr4_1:71390396-71390415 Msa0569500:intron 45.0%
TTGGTACGGAACCACATAAC+CGG + chr4_1:71390418-71390437 None:intergenic 45.0%
TGATTCTTTGCGAGGACTGT+TGG - chr4_1:71390460-71390479 Msa0569500:CDS 45.0%
TACAGCTTCGCTGACACAAA+AGG - chr4_1:71391080-71391099 Msa0569500:intron 45.0%
! GCTTGTCTCTTTTATGCCGA+CGG - chr4_1:71391580-71391599 Msa0569500:intron 45.0%
TAGAATGAGACTATCGCCGT+CGG + chr4_1:71391599-71391618 None:intergenic 45.0%
! AAAAGCCGCTACCCGAATTT+TGG - chr4_1:71391640-71391659 Msa0569500:intron 45.0%
! CGAGGCCTTTTTGCTAGATT+TGG + chr4_1:71392186-71392205 None:intergenic 45.0%
GATCAGTGACACATACTGCA+TGG - chr4_1:71392224-71392243 Msa0569500:intron 45.0%
GGGTTATCATACTAGGAAGC+TGG - chr4_1:71392413-71392432 Msa0569500:intron 45.0%
GCAAAAAGGAAGCAAGTGGA+CGG + chr4_1:71392943-71392962 None:intergenic 45.0%
! TCTGTTGGACAGTCCGTTTT+AGG - chr4_1:71393382-71393401 Msa0569500:intron 45.0%
AGGGTAGGGTGACAACATAA+TGG + chr4_1:71394714-71394733 None:intergenic 45.0%
ACTGTGGCAAACACATCATC+TGG + chr4_1:71394770-71394789 None:intergenic 45.0%
CACTCAAAGACCTTGTTGAG+TGG - chr4_1:71394909-71394928 Msa0569500:intron 45.0%
CACACTTTCTCCACTCAACA+AGG + chr4_1:71394922-71394941 None:intergenic 45.0%
AGCGTGTCGAATAATACCTC+AGG - chr4_1:71395066-71395085 Msa0569500:intron 45.0%
GTGTCGAATAATACCTCAGG+AGG - chr4_1:71395069-71395088 Msa0569500:intron 45.0%
CTCAGGAGGTTGTCTCTTTA+GGG - chr4_1:71395083-71395102 Msa0569500:intron 45.0%
TCTTCATGGAAGGGAAGAAG+AGG - chr4_1:71395180-71395199 Msa0569500:intron 45.0%
CTTCATGGAAGGGAAGAAGA+GGG - chr4_1:71395181-71395200 Msa0569500:intron 45.0%
TTCATGGAAGGGAAGAAGAG+GGG - chr4_1:71395182-71395201 Msa0569500:intron 45.0%
!!! GGAAGTTGGGTTTTAGGGAT+AGG - chr4_1:71395317-71395336 Msa0569500:intron 45.0%
GAGGTTCCTAATATGGGAAC+TGG - chr4_1:71395379-71395398 Msa0569500:intron 45.0%
!!! CTTGGTGGTTATTTTTGGGG+TGG - chr4_1:71395673-71395692 Msa0569500:intron 45.0%
CATCAATACATCACAACCGC+AGG - chr4_1:71395754-71395773 Msa0569500:intron 45.0%
TGATCTGCAATGCAACACGA+TGG - chr4_1:71395828-71395847 Msa0569500:intron 45.0%
CAAAGATCTGGTACAACCGA+TGG - chr4_1:71395868-71395887 Msa0569500:intron 45.0%
GGAACTGGAGAGAATGACAT+AGG - chr4_1:71396075-71396094 Msa0569500:intron 45.0%
CCCATAAACCAGCATACACT+TGG + chr4_1:71396281-71396300 None:intergenic 45.0%
CGCTATGCATTGCATCCTAA+TGG - chr4_1:71396435-71396454 Msa0569500:five_prime_UTR 45.0%
CAAGGAAACGGATCAGAAGA+AGG + chr4_1:71396492-71396511 None:intergenic 45.0%
CTTCTTCTGATCCGTTTCCT+TGG - chr4_1:71396490-71396509 Msa0569500:five_prime_UTR 45.0%
CGTTTCCTTGGGAAACTGAT+AGG - chr4_1:71396502-71396521 Msa0569500:five_prime_UTR 45.0%
GAGTTCCTATCAGTTTCCCA+AGG + chr4_1:71396510-71396529 None:intergenic 45.0%
ATGGCGATCTTGCCTTTGTT+TGG - chr4_1:71396634-71396653 Msa0569500:five_prime_UTR 45.0%
! CGATCTTGCCTTTGTTTGGA+AGG - chr4_1:71396638-71396657 Msa0569500:five_prime_UTR 45.0%
TTGTCAATAGGAGGCAGAGA+AGG + chr4_1:71396732-71396751 None:intergenic 45.0%
!!! TTTTTTTTTTTTTTTTTTGT+AGG - chr4_1:71392855-71392874 Msa0569500:intron 5.0%
AGCTACCGTTGCATAGTTCC+CGG - chr4_1:71388305-71388324 Msa0569500:CDS 50.0%
CACTACCGGGAACTATGCAA+CGG + chr4_1:71388313-71388332 None:intergenic 50.0%
GGTAACATCAACGCACTACC+GGG + chr4_1:71388326-71388345 None:intergenic 50.0%
CATCAACACGTCCTTGAAGG+AGG + chr4_1:71388453-71388472 None:intergenic 50.0%
TTCAACACAAACCCTGGCCT+AGG + chr4_1:71389196-71389215 None:intergenic 50.0%
GCCAGGGTTTGTGTTGAATG+AGG - chr4_1:71389198-71389217 Msa0569500:intron 50.0%
GCCTCATTCAACACAAACCC+TGG + chr4_1:71389202-71389221 None:intergenic 50.0%
GGGTGAAGCAAGCATGATAG+AGG - chr4_1:71390129-71390148 Msa0569500:intron 50.0%
!! ACATCAGCTTGGTTCGGTTC+GGG + chr4_1:71390381-71390400 None:intergenic 50.0%
!! CACATCAGCTTGGTTCGGTT+CGG + chr4_1:71390382-71390401 None:intergenic 50.0%
ACCGAACCAAGCTGATGTGT+AGG - chr4_1:71390383-71390402 Msa0569500:intron 50.0%
!! GGTTCAGTGTACCGGTTATG+TGG - chr4_1:71390404-71390423 Msa0569500:intron 50.0%
AGCTTCGCTGACACAAAAGG+AGG - chr4_1:71391083-71391102 Msa0569500:intron 50.0%
TACAACCTTGGCATGCTTCC+TGG + chr4_1:71391303-71391322 None:intergenic 50.0%
GAAGCATGCCAAGGTTGTAG+TGG - chr4_1:71391304-71391323 Msa0569500:five_prime_UTR 50.0%
ATCGTCCTCCACTACAACCT+TGG + chr4_1:71391315-71391334 None:intergenic 50.0%
TCCCTCCAAAATTCGGGTAG+CGG + chr4_1:71391648-71391667 None:intergenic 50.0%
AAGTCACTGGATGCCATCCA+CGG + chr4_1:71392279-71392298 None:intergenic 50.0%
ACTCTGCTTGTATCAGCCAC+TGG + chr4_1:71393440-71393459 None:intergenic 50.0%
! AACAAAAGCATAGAGGGGGG+CGG + chr4_1:71393854-71393873 None:intergenic 50.0%
CCTAAAGAGACAACCTCCTG+AGG + chr4_1:71395085-71395104 None:intergenic 50.0%
CCTCAGGAGGTTGTCTCTTT+AGG - chr4_1:71395082-71395101 Msa0569500:intron 50.0%
CGGTCGAACTAGATCTTCGA+TGG + chr4_1:71395789-71395808 None:intergenic 50.0%
! CGAAGATCTAGTTCGACCGA+TGG - chr4_1:71395790-71395809 Msa0569500:intron 50.0%
TGCAATGCAACACGATGGCA+GGG - chr4_1:71395833-71395852 Msa0569500:intron 50.0%
GTCATTCTCTCCAGTTCCTG+CGG + chr4_1:71396073-71396092 None:intergenic 50.0%
!! GTGTATGCTGGTTTATGGGG+CGG - chr4_1:71396282-71396301 Msa0569500:five_prime_UTR 50.0%
! GGTTTATGGGGCGGTACTTT+TGG - chr4_1:71396291-71396310 Msa0569500:five_prime_UTR 50.0%
! TATGGGGCGGTACTTTTGGA+TGG - chr4_1:71396295-71396314 Msa0569500:five_prime_UTR 50.0%
CTCTCGTATTGGGAGTCGAA+GGG - chr4_1:71396372-71396391 Msa0569500:five_prime_UTR 50.0%
! GAACATGCTTTTGCGGGAGA+AGG - chr4_1:71396546-71396565 Msa0569500:five_prime_UTR 50.0%
! AGGGAACCAGATTTTGCTCC+TGG + chr4_1:71396600-71396619 None:intergenic 50.0%
CCTTGAAGGAGGGATGCAAG+AGG + chr4_1:71388442-71388461 None:intergenic 55.0%
CCTCTTGCATCCCTCCTTCA+AGG - chr4_1:71388439-71388458 Msa0569500:CDS 55.0%
ACTAAGTGGGGTCGGCTACA+TGG + chr4_1:71389494-71389513 None:intergenic 55.0%
ATGTAGCCGACCCCACTTAG+TGG - chr4_1:71389493-71389512 Msa0569500:intron 55.0%
TGTAGCCGACCCCACTTAGT+GGG - chr4_1:71389494-71389513 Msa0569500:intron 55.0%
!! CATCAGCTTGGTTCGGTTCG+GGG + chr4_1:71390380-71390399 None:intergenic 55.0%
! TCTGACCAGGAAGCATGCCA+AGG - chr4_1:71391295-71391314 Msa0569500:five_prime_UTR 55.0%
GCATGCCAAGGTTGTAGTGG+AGG - chr4_1:71391307-71391326 Msa0569500:five_prime_UTR 55.0%
! AGCCGCTACCCGAATTTTGG+AGG - chr4_1:71391643-71391662 Msa0569500:intron 55.0%
! GCCGCTACCCGAATTTTGGA+GGG - chr4_1:71391644-71391663 Msa0569500:intron 55.0%
TGGATCTTGGACGTGTCAGC+AGG + chr4_1:71391908-71391927 None:intergenic 55.0%
TCGATGGTTACTTGGCCCTG+CGG + chr4_1:71395773-71395792 None:intergenic 55.0%
CTGCAATGCAACACGATGGC+AGG - chr4_1:71395832-71395851 Msa0569500:intron 55.0%
GCTCTCGTATTGGGAGTCGA+AGG - chr4_1:71396371-71396390 Msa0569500:five_prime_UTR 55.0%
!! GCGGGAGAAGGTATTGCAAG+TGG - chr4_1:71396558-71396577 Msa0569500:five_prime_UTR 55.0%
!! TGCAGTGGGCTGTTCTGACC+AGG - chr4_1:71391282-71391301 Msa0569500:five_prime_UTR 60.0%
TCAGCAGGCTGCGCGAAGAA+AGG + chr4_1:71391893-71391912 None:intergenic 60.0%
!! GCGCTCACGATCTCTGGAGT+TGG + chr4_1:71392257-71392276 None:intergenic 60.0%
! TCCAGAGATCGTGAGCGCCG+TGG - chr4_1:71392259-71392278 Msa0569500:intron 65.0%
TCCACGGCGCTCACGATCTC+TGG + chr4_1:71392263-71392282 None:intergenic 65.0%
! GAGATCGTGAGCGCCGTGGA+TGG - chr4_1:71392263-71392282 Msa0569500:five_prime_UTR 65.0%
AAGCATAGAGGGGGGCGGTG+TGG + chr4_1:71393849-71393868 None:intergenic 65.0%
CAGCAACACAACACGGCCGC+AGG - chr4_1:71396054-71396073 Msa0569500:intron 65.0%
CACAACACGGCCGCAGGAAC+TGG - chr4_1:71396060-71396079 Msa0569500:intron 65.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 71387433 71396797 71387433 ID=Msa0569500;Name=Msa0569500
chr4_1 mRNA 71387433 71396797 71387433 ID=Msa0569500-mRNA-1;Parent=Msa0569500;Name=Msa0569500-mRNA-1;_AED=0.17;_eAED=0.17;_QI=1786|0.91|0.84|1|0.58|0.69|13|0|509
chr4_1 exon 71387433 71388912 71387433 ID=Msa0569500-mRNA-1:exon:24252;Parent=Msa0569500-mRNA-1
chr4_1 exon 71390460 71390664 71390460 ID=Msa0569500-mRNA-1:exon:24251;Parent=Msa0569500-mRNA-1
chr4_1 exon 71390686 71390836 71390686 ID=Msa0569500-mRNA-1:exon:24250;Parent=Msa0569500-mRNA-1
chr4_1 exon 71391225 71391353 71391225 ID=Msa0569500-mRNA-1:exon:24249;Parent=Msa0569500-mRNA-1
chr4_1 exon 71391888 71392037 71391888 ID=Msa0569500-mRNA-1:exon:24248;Parent=Msa0569500-mRNA-1
chr4_1 exon 71392260 71392325 71392260 ID=Msa0569500-mRNA-1:exon:24247;Parent=Msa0569500-mRNA-1
chr4_1 exon 71392553 71392591 71392553 ID=Msa0569500-mRNA-1:exon:24246;Parent=Msa0569500-mRNA-1
chr4_1 exon 71392863 71392943 71392863 ID=Msa0569500-mRNA-1:exon:24245;Parent=Msa0569500-mRNA-1
chr4_1 exon 71393064 71393145 71393064 ID=Msa0569500-mRNA-1:exon:24244;Parent=Msa0569500-mRNA-1
chr4_1 exon 71393442 71393533 71393442 ID=Msa0569500-mRNA-1:exon:24243;Parent=Msa0569500-mRNA-1
chr4_1 exon 71394009 71394109 71394009 ID=Msa0569500-mRNA-1:exon:24242;Parent=Msa0569500-mRNA-1
chr4_1 exon 71394957 71395070 71394957 ID=Msa0569500-mRNA-1:exon:24241;Parent=Msa0569500-mRNA-1
chr4_1 exon 71396172 71396797 71396172 ID=Msa0569500-mRNA-1:exon:24240;Parent=Msa0569500-mRNA-1
chr4_1 five_prime_UTR 71396172 71396797 71396172 ID=Msa0569500-mRNA-1:five_prime_utr;Parent=Msa0569500-mRNA-1
chr4_1 five_prime_UTR 71394957 71395070 71394957 ID=Msa0569500-mRNA-1:five_prime_utr;Parent=Msa0569500-mRNA-1
chr4_1 five_prime_UTR 71394009 71394109 71394009 ID=Msa0569500-mRNA-1:five_prime_utr;Parent=Msa0569500-mRNA-1
chr4_1 five_prime_UTR 71393442 71393533 71393442 ID=Msa0569500-mRNA-1:five_prime_utr;Parent=Msa0569500-mRNA-1
chr4_1 five_prime_UTR 71393064 71393145 71393064 ID=Msa0569500-mRNA-1:five_prime_utr;Parent=Msa0569500-mRNA-1
chr4_1 five_prime_UTR 71392863 71392943 71392863 ID=Msa0569500-mRNA-1:five_prime_utr;Parent=Msa0569500-mRNA-1
chr4_1 five_prime_UTR 71392553 71392591 71392553 ID=Msa0569500-mRNA-1:five_prime_utr;Parent=Msa0569500-mRNA-1
chr4_1 five_prime_UTR 71392260 71392325 71392260 ID=Msa0569500-mRNA-1:five_prime_utr;Parent=Msa0569500-mRNA-1
chr4_1 five_prime_UTR 71391888 71392037 71391888 ID=Msa0569500-mRNA-1:five_prime_utr;Parent=Msa0569500-mRNA-1
chr4_1 five_prime_UTR 71391225 71391353 71391225 ID=Msa0569500-mRNA-1:five_prime_utr;Parent=Msa0569500-mRNA-1
chr4_1 five_prime_UTR 71390686 71390836 71390686 ID=Msa0569500-mRNA-1:five_prime_utr;Parent=Msa0569500-mRNA-1
chr4_1 five_prime_UTR 71390510 71390664 71390510 ID=Msa0569500-mRNA-1:five_prime_utr;Parent=Msa0569500-mRNA-1
chr4_1 CDS 71390460 71390509 71390460 ID=Msa0569500-mRNA-1:cds;Parent=Msa0569500-mRNA-1
chr4_1 CDS 71387433 71388912 71387433 ID=Msa0569500-mRNA-1:cds;Parent=Msa0569500-mRNA-1
Gene Sequence

>Msa0569500

ATGTCTCACTCGCAACATGAATTACTTGGGCTATGTTTGGTTCAAATGAGGAAGTTGGGTTTTAGGGATAGGAAAAAGTTGCTTGAGATAACCACTAGCCAAGTTAGATTAGAGGTTCCTAATATGGGAACTGGACCATTGTTTCCTAGATCAAGAGATGATTCTGTAAATTTTCAGAAAGATTTGGTGCTTTTGAAGGAAAGAAGAGCATTCCTTGTTCAAATGGCTCAAATGTATAAGCTTGGTTGTATTCAGATTGAAAATAAGGAAAATTCTCAAGGGGAAGAAGTATGTTCAATGGAATTAGAGGTTGATCAGGCGAGAAAGAGTCGTGACTATTCAAAAGCTTTCTCTTTTCCTCCAAGCAATAAGGATAGTGACACACAATGCATCAAGAGAAAGAGTCTTGGTGGTTATTTTTGGGGTGGCTTTAAACATATCTTTGGAAGATCTAGTTTAGTTGACGACTGTGCTGTCAATACTGATCATCAATACATCACAACCGCAGGGCCAAGTAACCATCGAAGATCTAGTTCGACCGATGGCAGTGCTGTCAATATTGATCTGCAATGCAACACGATGGCAGGGACAAGAGACGATCAAAGATCTGGTACAACCGATGGCAGTGTTATCAATATTGATCAGAAACACGAAACAAGATACCATCGAAGATCTAGTACAATCGATGGAGGTGTTAACAATATTGATCAGCATCACAAAATGATTGCTGGAACAATAGATGATCAAGGATCTAGTGCAATTGATGGGAGTGTTGTCAATATTGATCAGCAACACAACACGGCCGCAGGAACTGGAGAGAATGACATAGGGATTAGTTCAAGCCATGAGATAAAGAATGCAAAGCTTCAACACTTTCTTAGATCAAGTGACACGTTAATGCTAACATTGAGTGCATTAAATGCAAAATTATCATCTTTTCGAGGTTGGCCGAATATGAACAAAAGTTGGTTTGCACTTTACAAGATGCCTTTGCAAGTTCCTAAAGAAGACCAAGTGTATGCTGGTTTATGGGGCGGTACTTTTGGATGGCCTCATGAAAAACCTTCTCAAAACAAGCCAAAAAAGGCTTTATTCTTTCTTTTGCTCTCGTATTGGGAGTCGAAGGGACAACAACTTCTCATTGGAACAAAAATATTGGAAGGGGCTCGCTATGCATTGCATCCTAATGGTTCAGCAATGTTTATAGTGAATATCAACGAGCCTTCTTCTGATCCGTTTCCTTGGGAAACTGATAGGAACTCGTTTTCGATGAATATTGAACATGCTTTTGCGGGAGAAGGTATTGCAAGTGGTTATGGTTTCAAATATCCAGGAGCAAAATCTGGTTCCCTCTTTGTACTTCAAAATGGCGATCTTGCCTTTGTTTGGAAGGAATCTAGAGATGTTTTGACCCTGCAAAGACTTAACTTGCAAGAACTTTTGAAGAAAGGAAGAAGGATACCTTCTCTGCCTCCTATTGACAATTTTTCATATTTGATGAAATCCTGCTTAAATGTGTTTACAAGCTAA

Protein sequence

>Msa0569500

MSHSQHELLGLCLVQMRKLGFRDRKKLLEITTSQVRLEVPNMGTGPLFPRSRDDSVNFQKDLVLLKERRAFLVQMAQMYKLGCIQIENKENSQGEEVCSMELEVDQARKSRDYSKAFSFPPSNKDSDTQCIKRKSLGGYFWGGFKHIFGRSSLVDDCAVNTDHQYITTAGPSNHRRSSSTDGSAVNIDLQCNTMAGTRDDQRSGTTDGSVINIDQKHETRYHRRSSTIDGGVNNIDQHHKMIAGTIDDQGSSAIDGSVVNIDQQHNTAAGTGENDIGISSSHEIKNAKLQHFLRSSDTLMLTLSALNAKLSSFRGWPNMNKSWFALYKMPLQVPKEDQVYAGLWGGTFGWPHEKPSQNKPKKALFFLLLSYWESKGQQLLIGTKILEGARYALHPNGSAMFIVNINEPSSDPFPWETDRNSFSMNIEHAFAGEGIASGYGFKYPGAKSGSLFVLQNGDLAFVWKESRDVLTLQRLNLQELLKKGRRIPSLPPIDNFSYLMKSCLNVFTS*