AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1197110


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1197110 MtrunA17_Chr8g0365881 88.920 361 7 2 1 361 1 328 0.0 652
Msa1197110 MtrunA17_Chr8g0364141 81.481 54 10 0 278 331 8 61 6.13e-23 93.6
Msa1197110 MtrunA17_Chr4g0068451 30.802 237 123 4 81 313 14 213 5.64e-21 91.3
Msa1197110 MtrunA17_Chr4g0055741 23.438 320 213 5 37 355 10 298 2.82e-17 81.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1197110 AT1G60550.1 70.300 367 73 5 1 361 1 337 0.0 518
Msa1197110 AT4G16800.1 24.638 276 176 3 82 355 54 299 4.94e-21 92.4

Find 93 sgRNAs with CRISPR-Local

Find 219 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCATTGCAATTACTGGTTT+TGG 0.240337 8_1:-47354959 None:intergenic
GGCTGTTGAAGCAGAGAAAA+TGG 0.259099 8_1:+47355478 Msa1197110:CDS
CCTTAATGTGTTAGACTTGC+AGG 0.280510 8_1:+47354394 Msa1197110:CDS
GATAGTACCATTGCAATTAC+TGG 0.296354 8_1:-47354965 None:intergenic
GCAGCAGATAATGCTATCTT+TGG 0.320415 8_1:+47355124 Msa1197110:CDS
TCTATAGAATAAAACTGATT+TGG 0.328989 8_1:+47356297 Msa1197110:three_prime_UTR
TTCCTTCTCATGATGTTGTT+TGG 0.337790 8_1:+47353282 Msa1197110:CDS
TCAAGTTACCAACGTGTTCA+TGG 0.366573 8_1:+47353254 Msa1197110:CDS
TGACGGGCACGCTGGACTTC+AGG 0.368255 8_1:+47355955 Msa1197110:CDS
AATGCTATCTTTGGCCAAAC+TGG 0.368332 8_1:+47355133 Msa1197110:CDS
CCTGCAAGTCTAACACATTA+AGG 0.368951 8_1:-47354394 None:intergenic
GCAGGGTATGCTGTTGGAGG+AGG 0.377182 8_1:+47355067 Msa1197110:CDS
GGGAGCTTTGATGCTGGTTA+TGG 0.384393 8_1:+47355292 Msa1197110:CDS
TTATGTCAATTATAGGAAAT+GGG 0.391046 8_1:+47356098 Msa1197110:intron
GTTTCTCACAAGGTTCTATA+CGG 0.403885 8_1:+47355457 Msa1197110:CDS
GAAATAGCCCAACCACAATT+CGG 0.408821 8_1:+47355903 Msa1197110:CDS
CTAACATTAACACAGGTTGC+AGG 0.410643 8_1:+47355049 Msa1197110:CDS
TATTCTGATCATGAAAATAT+CGG 0.418618 8_1:+47354368 Msa1197110:CDS
ATCATCATCTTCAATGTCAT+TGG 0.421137 8_1:+47353080 Msa1197110:five_prime_UTR
CCATTGGAGAAATGAGCTAT+AGG 0.421367 8_1:-47353115 None:intergenic
GAAGCACCTTAGGACCAGTT+TGG 0.426368 8_1:-47355147 None:intergenic
AGGAGGGCATATATTGCATA+TGG 0.429416 8_1:+47355084 Msa1197110:CDS
TTCTCATGATGTTGTTTGGA+AGG 0.432166 8_1:+47353286 Msa1197110:CDS
AAATAGCCCAACCACAATTC+GGG 0.432216 8_1:+47355904 Msa1197110:CDS
CATGTTAGTTTATTTGAGGC+TGG 0.445533 8_1:+47356330 Msa1197110:three_prime_UTR
AGTTCATGTTAGTTTATTTG+AGG 0.446503 8_1:+47356326 Msa1197110:three_prime_UTR
ATGTCTTTGTTGTTTGCCAT+TGG 0.466222 8_1:-47353131 None:intergenic
CGAAAAGCATTCCTTCTCTC+AGG 0.474072 8_1:-47353605 None:intergenic
CTATTAATGCAGTGGATGAC+GGG 0.487601 8_1:+47355939 Msa1197110:CDS
AAGTTCTATCATGTCACGTT+TGG 0.491658 8_1:+47355315 Msa1197110:CDS
TGAGAACCCGAATTGTGGTT+GGG 0.497593 8_1:-47355910 None:intergenic
CTGGTACAACAGTATTGATA+AGG 0.497909 8_1:-47355502 None:intergenic
GCTATTAATGCAGTGGATGA+CGG 0.498064 8_1:+47355938 Msa1197110:CDS
GATGATGATGATGGTGGGAG+TGG 0.501186 8_1:-47353063 None:intergenic
AAGAAACAATCAAATGGTGT+AGG 0.506674 8_1:+47355870 Msa1197110:CDS
AAATAATTTGCAGCTGCAGA+AGG 0.510989 8_1:-47355025 None:intergenic
TCATGATCAGAATAACCATC+TGG 0.512939 8_1:-47354359 None:intergenic
CTTTGGCCAAACTGGTCCTA+AGG 0.517904 8_1:+47355141 Msa1197110:CDS
TTGATGTTGGAGAGGAAACA+AGG 0.525526 8_1:-47353193 None:intergenic
CTTGGCAATTCCTTCACCAA+CGG 0.525754 8_1:-47353366 None:intergenic
GCTGTTGAAGCAGAGAAAAT+GGG 0.526704 8_1:+47355479 Msa1197110:CDS
TTGAGAACCCGAATTGTGGT+TGG 0.526894 8_1:-47355911 None:intergenic
TTCAGATGATGATGAAGGAA+AGG 0.527599 8_1:+47353316 Msa1197110:CDS
GTTGGTGTCATCATTCTCAC+TGG 0.529021 8_1:+47353686 Msa1197110:CDS
ATTCCTTCAGATGATGATGA+AGG 0.536133 8_1:+47353311 Msa1197110:CDS
TGGAGAGGAAACAAGGTGGT+TGG 0.539271 8_1:-47353186 None:intergenic
GGTGGTGGTGATATTGATGT+TGG 0.539487 8_1:-47353206 None:intergenic
TGTAGGATGTGGATAAGATA+AGG 0.550338 8_1:-47353019 None:intergenic
AGAAACAATCAAATGGTGTA+GGG 0.550444 8_1:+47355871 Msa1197110:CDS
TTTCCTTCATCATCATCTGA+AGG 0.551061 8_1:-47353314 None:intergenic
AAGGTTGGGAGCTTTGATGC+TGG 0.551127 8_1:+47355286 Msa1197110:intron
CAGGTTGCAGGGTATGCTGT+TGG 0.551508 8_1:+47355061 Msa1197110:CDS
CAGGGTATGCTGTTGGAGGA+GGG 0.554607 8_1:+47355068 Msa1197110:CDS
GGCACTGAAGAAGCAAATGA+AGG 0.554741 8_1:+47356146 Msa1197110:CDS
AACCACAATTCGGGTTCTCA+AGG 0.555769 8_1:+47355913 Msa1197110:CDS
CATCTGGAGTCCTCAAGGCT+TGG 0.556853 8_1:-47354343 None:intergenic
GATAGCATTATCTGCTGCAA+TGG 0.558797 8_1:-47355119 None:intergenic
CCTATAGCTCATTTCTCCAA+TGG 0.563998 8_1:+47353115 Msa1197110:exon
TATGAGAAATCCGTTGGTGA+AGG 0.569437 8_1:+47353356 Msa1197110:CDS
TAACATTAACACAGGTTGCA+GGG 0.569695 8_1:+47355050 Msa1197110:CDS
GTTGCAGGGTATGCTGTTGG+AGG 0.577134 8_1:+47355064 Msa1197110:CDS
GCTAGAGATGATCCCTCTGT+TGG 0.578549 8_1:+47353668 Msa1197110:CDS
TTTGTTATCAATTTGGGACA+TGG 0.585071 8_1:+47356266 Msa1197110:three_prime_UTR
ATAACCATCTGGAGTCCTCA+AGG 0.585989 8_1:-47354348 None:intergenic
AAGGAAATAAGTTGAGGTGG+TGG 0.591859 8_1:-47353221 None:intergenic
ATTGAAGATGATGATGATGA+TGG 0.595058 8_1:-47353072 None:intergenic
GTGAAATGTGGTTTCTCACA+AGG 0.596317 8_1:+47355447 Msa1197110:CDS
GGAACAGATGCGTTCTGTAG+TGG 0.596532 8_1:+47354314 Msa1197110:CDS
CGTTGGTGAAGGAATTGCCA+AGG 0.597323 8_1:+47353367 Msa1197110:CDS
ATGATGATGATGGTGGGAGT+GGG 0.599280 8_1:-47353062 None:intergenic
CAAGGCAGCTATTAATGCAG+TGG 0.600034 8_1:+47355931 Msa1197110:CDS
TGTCATCATTCTCACTGGAA+AGG 0.600797 8_1:+47353691 Msa1197110:CDS
TTCCAAACAACATCATGAGA+AGG 0.606798 8_1:-47353284 None:intergenic
GCAGTGGATGACGGGCACGC+TGG 0.611049 8_1:+47355947 Msa1197110:CDS
TGTCAATTATAGGAAATGGG+TGG 0.612210 8_1:+47356101 Msa1197110:intron
TGCCTTGAGAACCCGAATTG+TGG 0.618889 8_1:-47355915 None:intergenic
CACAAGGAAATAAGTTGAGG+TGG 0.624126 8_1:-47353224 None:intergenic
TTATTTGCTAACATTAACAC+AGG 0.624961 8_1:+47355042 Msa1197110:CDS
AGAATGATGACACCAACAGA+GGG 0.629795 8_1:-47353680 None:intergenic
CAAGCCTTGAGGACTCCAGA+TGG 0.630119 8_1:+47354344 Msa1197110:CDS
TCCAAAACCAGTAATTGCAA+TGG 0.632257 8_1:+47354958 Msa1197110:CDS
GAGAATGATGACACCAACAG+AGG 0.638786 8_1:-47353681 None:intergenic
ATCAGCTCCTTAATCGTGTG+AGG 0.645905 8_1:-47353629 None:intergenic
GTATTAATAGGCCTGAGAGA+AGG 0.646223 8_1:+47353594 Msa1197110:CDS
TGACACAAGGAAATAAGTTG+AGG 0.649038 8_1:-47353227 None:intergenic
ATTGTCTATGAGAAATCCGT+TGG 0.649414 8_1:+47353350 Msa1197110:CDS
ACAGATGCGTTCTGTAGTGG+TGG 0.672100 8_1:+47354317 Msa1197110:CDS
TGGTGATATTGATGTTGGAG+AGG 0.678621 8_1:-47353201 None:intergenic
GCGTCTTCGCTCCATATATG+CGG 0.682881 8_1:-47356174 None:intergenic
GTAACTTGAAGTGTGACACA+AGG 0.684211 8_1:-47353240 None:intergenic
GAACATCACCATGAACACGT+TGG 0.725959 8_1:-47353262 None:intergenic
ATGTTGGAGAGGAAACAAGG+TGG 0.769684 8_1:-47353190 None:intergenic
GTGGTGGTGACCAAGCCTTG+AGG 0.785466 8_1:+47354333 Msa1197110:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAATAAATAACTTCAAATA+TGG - chr8_1:47353502-47353521 None:intergenic 10.0%
!!! ATATATTGTCTTTAAAATTA+TGG + chr8_1:47354670-47354689 Msa1197110:intron 10.0%
!!! TTAATTTTTGTTATCAATTT+GGG + chr8_1:47356260-47356279 Msa1197110:three_prime_UTR 10.0%
!! TTACAAAACAATAAAGTAAA+TGG - chr8_1:47353736-47353755 None:intergenic 15.0%
!! TACAAATGTTAAAATGAAAA+TGG - chr8_1:47355182-47355201 None:intergenic 15.0%
!!! AATTCAACATTGATATTTTA+TGG + chr8_1:47356125-47356144 Msa1197110:CDS 15.0%
!! TATTAAACTTAGAAAAATCT+GGG - chr8_1:47356199-47356218 None:intergenic 15.0%
!!! TATAAATGCTTTTGAAATTA+TGG - chr8_1:47356227-47356246 None:intergenic 15.0%
!!! GTTAATTTTTGTTATCAATT+TGG + chr8_1:47356259-47356278 Msa1197110:three_prime_UTR 15.0%
!!! TTTTGCAGATTAGTATTAAT+AGG + chr8_1:47353582-47353601 Msa1197110:intron 20.0%
!!! TAATGATATATTGATGATGT+AGG + chr8_1:47354292-47354311 Msa1197110:intron 20.0%
!!! AATGATATATTGATGATGTA+GGG + chr8_1:47354293-47354312 Msa1197110:intron 20.0%
!! TATTCTGATCATGAAAATAT+CGG + chr8_1:47354368-47354387 Msa1197110:CDS 20.0%
!!! TAGAAAAATCTGGAATAAAT+CGG - chr8_1:47354426-47354445 None:intergenic 20.0%
!!! ACAATATATCAGTTTTTCAT+TGG - chr8_1:47354659-47354678 None:intergenic 20.0%
!!! ATTTTTCTCATTACAAATCA+TGG - chr8_1:47354840-47354859 None:intergenic 20.0%
!!! AAGCACATTTTTTTATCTTT+TGG - chr8_1:47355398-47355417 None:intergenic 20.0%
!!! TAATTTTAGTTTCTCCTTTA+AGG + chr8_1:47355565-47355584 Msa1197110:intron 20.0%
!! TAGAAAAAGAAACAATCAAA+TGG + chr8_1:47355864-47355883 Msa1197110:CDS 20.0%
!!! CATTATTAAACTTGTTTTAG+TGG + chr8_1:47355983-47356002 Msa1197110:intron 20.0%
!!! GTTGTTTTTATGTCAATTAT+AGG + chr8_1:47356091-47356110 Msa1197110:intron 20.0%
!! TTTATGTCAATTATAGGAAA+TGG + chr8_1:47356097-47356116 Msa1197110:intron 20.0%
!! TTATGTCAATTATAGGAAAT+GGG + chr8_1:47356098-47356117 Msa1197110:intron 20.0%
!! CTATTAAACTTAGAAAAATC+TGG - chr8_1:47356200-47356219 None:intergenic 20.0%
!! TCTATAGAATAAAACTGATT+TGG + chr8_1:47356297-47356316 Msa1197110:three_prime_UTR 20.0%
!!! TTACTTAAGTTTTGTCTTGT+AGG - chr8_1:47353039-47353058 None:intergenic 25.0%
! AAGCAAAAAGAAAATGAGAA+AGG - chr8_1:47353404-47353423 None:intergenic 25.0%
! TCAAATATGGCAATTCAAAA+TGG - chr8_1:47353489-47353508 None:intergenic 25.0%
! TGAGACTGTTTGTATAATTT+AGG + chr8_1:47353534-47353553 Msa1197110:intron 25.0%
! GAGACTGTTTGTATAATTTA+GGG + chr8_1:47353535-47353554 Msa1197110:intron 25.0%
! ATAATGATTGGATTAACAAG+TGG - chr8_1:47353803-47353822 None:intergenic 25.0%
!! ACTAGTTGTATGATAATGAT+TGG - chr8_1:47353815-47353834 None:intergenic 25.0%
! TGCTGATAAAATAAAACCAA+TGG - chr8_1:47353916-47353935 None:intergenic 25.0%
! TTCACACAAATAGAAAAATC+TGG - chr8_1:47354436-47354455 None:intergenic 25.0%
!!! TATCTCTTTGGTTATTTTTG+AGG + chr8_1:47354481-47354500 Msa1197110:intron 25.0%
! TTTCTCAAACAACATTATAC+TGG - chr8_1:47354543-47354562 None:intergenic 25.0%
! AATTTGAGGACTAAATTAAC+CGG - chr8_1:47354598-47354617 None:intergenic 25.0%
! TCTACTAAATTAGAGAACAT+TGG - chr8_1:47354725-47354744 None:intergenic 25.0%
!!! ATTGTTATTTCTCCAATTTG+AGG + chr8_1:47354749-47354768 Msa1197110:intron 25.0%
!!! TTGTTATTTCTCCAATTTGA+GGG + chr8_1:47354750-47354769 Msa1197110:intron 25.0%
!! TTATTTGCTAACATTAACAC+AGG + chr8_1:47355042-47355061 Msa1197110:CDS 25.0%
! AATTCCAAACATAACCTTAA+AGG - chr8_1:47355582-47355601 None:intergenic 25.0%
! TTCATTATCATTGTATTGCA+TGG + chr8_1:47355744-47355763 Msa1197110:intron 25.0%
!!! GTTAATGCAATGTTTTGATT+TGG + chr8_1:47355826-47355845 Msa1197110:intron 25.0%
!! AGTTCATGTTAGTTTATTTG+AGG + chr8_1:47356326-47356345 Msa1197110:three_prime_UTR 25.0%
!! ATTTTTCTGTGTGTATTAGT+CGG + chr8_1:47356410-47356429 Msa1197110:three_prime_UTR 25.0%
! ATTGAAGATGATGATGATGA+TGG - chr8_1:47353075-47353094 None:intergenic 30.0%
ATCATCATCTTCAATGTCAT+TGG + chr8_1:47353080-47353099 Msa1197110:five_prime_UTR 30.0%
CAAAAAGAAAATGAGAAAGG+TGG - chr8_1:47353401-47353420 None:intergenic 30.0%
! GTCTAAGTTGAAGAAATGTT+GGG + chr8_1:47353557-47353576 Msa1197110:intron 30.0%
!! TTATTTTATAGGGCATGTTG+AGG + chr8_1:47353759-47353778 Msa1197110:intron 30.0%
TAAGTCACATGACAAGTTAA+TGG - chr8_1:47353841-47353860 None:intergenic 30.0%
!! TTGTTTTGTTCAAGTGACTT+TGG + chr8_1:47353885-47353904 Msa1197110:intron 30.0%
TCATGAAATGATCAACTTGA+TGG + chr8_1:47353972-47353991 Msa1197110:intron 30.0%
ATCATATGATGCTTTCAGTA+CGG + chr8_1:47354018-47354037 Msa1197110:intron 30.0%
! GTTTTCAAAACCAAACCATA+CGG + chr8_1:47354053-47354072 Msa1197110:intron 30.0%
ATCCTTAATGCAGAATTGAA+TGG + chr8_1:47354266-47354285 Msa1197110:intron 30.0%
AACCATTCAATTCTGCATTA+AGG - chr8_1:47354271-47354290 None:intergenic 30.0%
AAAGAGATACCTTGAGTAAT+GGG - chr8_1:47354470-47354489 None:intergenic 30.0%
!!! TTTTGAGGCATTCATTTCAA+TGG + chr8_1:47354496-47354515 Msa1197110:intron 30.0%
! TTTTTGTCCGTCAAATTGTA+AGG + chr8_1:47354571-47354590 Msa1197110:intron 30.0%
! TTTTGTCCGTCAAATTGTAA+GGG + chr8_1:47354572-47354591 Msa1197110:intron 30.0%
! ATTGGTTTCAACTGATGTTA+GGG - chr8_1:47354641-47354660 None:intergenic 30.0%
AAAATTATGGTGCTTGATTC+TGG + chr8_1:47354683-47354702 Msa1197110:intron 30.0%
! TCATTCTTTTCTCCTATTAC+AGG + chr8_1:47354919-47354938 Msa1197110:intron 30.0%
ATGTTACAAAAGACGAAAAG+GGG - chr8_1:47355248-47355267 None:intergenic 30.0%
GATGTTACAAAAGACGAAAA+GGG - chr8_1:47355249-47355268 None:intergenic 30.0%
AGATGTTACAAAAGACGAAA+AGG - chr8_1:47355250-47355269 None:intergenic 30.0%
! TCTTGTCTTTGTATCGATAA+AGG + chr8_1:47355267-47355286 Msa1197110:intron 30.0%
! TCTTTGTATCGATAAAGGTT+GGG + chr8_1:47355272-47355291 Msa1197110:intron 30.0%
AAAAATGTGCTTCTCAATAC+AGG + chr8_1:47355406-47355425 Msa1197110:intron 30.0%
AGGAGAAACTAAAATTACAG+TGG - chr8_1:47355562-47355581 None:intergenic 30.0%
!! TTCTCCTTTAAGGTTATGTT+TGG + chr8_1:47355575-47355594 Msa1197110:intron 30.0%
AAGAAACAATCAAATGGTGT+AGG + chr8_1:47355870-47355889 Msa1197110:CDS 30.0%
AGAAACAATCAAATGGTGTA+GGG + chr8_1:47355871-47355890 Msa1197110:CDS 30.0%
TATGCATACATATGCTCTAA+GGG - chr8_1:47356065-47356084 None:intergenic 30.0%
ATATGCATACATATGCTCTA+AGG - chr8_1:47356066-47356085 None:intergenic 30.0%
! TTTGTTATCAATTTGGGACA+TGG + chr8_1:47356266-47356285 Msa1197110:three_prime_UTR 30.0%
TGTAGGATGTGGATAAGATA+AGG - chr8_1:47353022-47353041 None:intergenic 35.0%
!! AAGTTTTGTCTTGTAGGATG+TGG - chr8_1:47353033-47353052 None:intergenic 35.0%
!! AAGATGATGATGATGATGGT+GGG - chr8_1:47353071-47353090 None:intergenic 35.0%
!! ATGTCTTTGTTGTTTGCCAT+TGG - chr8_1:47353134-47353153 None:intergenic 35.0%
TGACACAAGGAAATAAGTTG+AGG - chr8_1:47353230-47353249 None:intergenic 35.0%
TTCCTTCTCATGATGTTGTT+TGG + chr8_1:47353282-47353301 Msa1197110:CDS 35.0%
TTCCAAACAACATCATGAGA+AGG - chr8_1:47353287-47353306 None:intergenic 35.0%
! TTCTCATGATGTTGTTTGGA+AGG + chr8_1:47353286-47353305 Msa1197110:CDS 35.0%
! ATTCCTTCAGATGATGATGA+AGG + chr8_1:47353311-47353330 Msa1197110:CDS 35.0%
TTTCCTTCATCATCATCTGA+AGG - chr8_1:47353317-47353336 None:intergenic 35.0%
! TTCAGATGATGATGAAGGAA+AGG + chr8_1:47353316-47353335 Msa1197110:CDS 35.0%
ATTGTCTATGAGAAATCCGT+TGG + chr8_1:47353350-47353369 Msa1197110:CDS 35.0%
AAGAAAATGAGAAAGGTGGA+AGG - chr8_1:47353397-47353416 None:intergenic 35.0%
ACTATTACTCTCTCTTAGCT+AGG + chr8_1:47353462-47353481 Msa1197110:intron 35.0%
! GGTCTAAGTTGAAGAAATGT+TGG + chr8_1:47353556-47353575 Msa1197110:intron 35.0%
AGTGACTTTGGATATTCCAT+TGG + chr8_1:47353897-47353916 Msa1197110:intron 35.0%
TTTCATGACAAGTGACAACA+TGG - chr8_1:47353960-47353979 None:intergenic 35.0%
GTCTTAAGTGACAAACTACA+TGG - chr8_1:47354239-47354258 None:intergenic 35.0%
TCATGATCAGAATAACCATC+TGG - chr8_1:47354362-47354381 None:intergenic 35.0%
AAAGTGATTCCCATTACTCA+AGG + chr8_1:47354458-47354477 Msa1197110:intron 35.0%
CAAAGAGATACCTTGAGTAA+TGG - chr8_1:47354471-47354490 None:intergenic 35.0%
! CATTACTCAAGGTATCTCTT+TGG + chr8_1:47354469-47354488 Msa1197110:intron 35.0%
TAGTCCTCAAATTCACGAAA+TGG + chr8_1:47354605-47354624 Msa1197110:intron 35.0%
! ATTGCCATTTCGTGAATTTG+AGG - chr8_1:47354612-47354631 None:intergenic 35.0%
TTGGTTTCAACTGATGTTAG+GGG - chr8_1:47354640-47354659 None:intergenic 35.0%
!! CATTGGTTTCAACTGATGTT+AGG - chr8_1:47354642-47354661 None:intergenic 35.0%
!!! TTGCAATTACTGGTTTTGGA+AGG - chr8_1:47354958-47354977 None:intergenic 35.0%
TCCAAAACCAGTAATTGCAA+TGG + chr8_1:47354958-47354977 Msa1197110:CDS 35.0%
!!! ACCATTGCAATTACTGGTTT+TGG - chr8_1:47354962-47354981 None:intergenic 35.0%
GATAGTACCATTGCAATTAC+TGG - chr8_1:47354968-47354987 None:intergenic 35.0%
GTGCACAAAAAAGTGAGATT+TGG - chr8_1:47355001-47355020 None:intergenic 35.0%
! AAATAATTTGCAGCTGCAGA+AGG - chr8_1:47355028-47355047 None:intergenic 35.0%
TAACATTAACACAGGTTGCA+GGG + chr8_1:47355050-47355069 Msa1197110:CDS 35.0%
! GCAAATTATTGAAGCACCTT+AGG - chr8_1:47355160-47355179 None:intergenic 35.0%
! GTCTTTGTATCGATAAAGGT+TGG + chr8_1:47355271-47355290 Msa1197110:intron 35.0%
AAGTTCTATCATGTCACGTT+TGG + chr8_1:47355315-47355334 Msa1197110:CDS 35.0%
!!! CACATTTCACGTGCTTTTTT+AGG - chr8_1:47355437-47355456 None:intergenic 35.0%
! CTAAAAAAGCACGTGAAATG+TGG + chr8_1:47355435-47355454 Msa1197110:CDS 35.0%
GTTTCTCACAAGGTTCTATA+CGG + chr8_1:47355457-47355476 Msa1197110:CDS 35.0%
!! CTGGTACAACAGTATTGATA+AGG - chr8_1:47355505-47355524 None:intergenic 35.0%
TGTTCTATGAATGGAATGGA+AGG - chr8_1:47355535-47355554 None:intergenic 35.0%
TGAGTGTTCTATGAATGGAA+TGG - chr8_1:47355539-47355558 None:intergenic 35.0%
TGTCAATTATAGGAAATGGG+TGG + chr8_1:47356101-47356120 Msa1197110:intron 35.0%
TGAAGGAAAAACCGCATATA+TGG + chr8_1:47356163-47356182 Msa1197110:CDS 35.0%
! CATGTTAGTTTATTTGAGGC+TGG + chr8_1:47356330-47356349 Msa1197110:three_prime_UTR 35.0%
!! GAAGATGATGATGATGATGG+TGG - chr8_1:47353072-47353091 None:intergenic 40.0%
CCATTGGAGAAATGAGCTAT+AGG - chr8_1:47353118-47353137 None:intergenic 40.0%
CCTATAGCTCATTTCTCCAA+TGG + chr8_1:47353115-47353134 Msa1197110:exon 40.0%
TTGATGTTGGAGAGGAAACA+AGG - chr8_1:47353196-47353215 None:intergenic 40.0%
TGGTGATATTGATGTTGGAG+AGG - chr8_1:47353204-47353223 None:intergenic 40.0%
! AAGGAAATAAGTTGAGGTGG+TGG - chr8_1:47353224-47353243 None:intergenic 40.0%
! CACAAGGAAATAAGTTGAGG+TGG - chr8_1:47353227-47353246 None:intergenic 40.0%
GTAACTTGAAGTGTGACACA+AGG - chr8_1:47353243-47353262 None:intergenic 40.0%
TCAAGTTACCAACGTGTTCA+TGG + chr8_1:47353254-47353273 Msa1197110:CDS 40.0%
! TATGAGAAATCCGTTGGTGA+AGG + chr8_1:47353356-47353375 Msa1197110:CDS 40.0%
GTATTAATAGGCCTGAGAGA+AGG + chr8_1:47353594-47353613 Msa1197110:CDS 40.0%
! TTTTCGACCTCACACGATTA+AGG + chr8_1:47353622-47353641 Msa1197110:CDS 40.0%
AGAATGATGACACCAACAGA+GGG - chr8_1:47353683-47353702 None:intergenic 40.0%
TGTCATCATTCTCACTGGAA+AGG + chr8_1:47353691-47353710 Msa1197110:CDS 40.0%
GTAAATGGCAGTAGCAGAAA+AGG - chr8_1:47353721-47353740 None:intergenic 40.0%
! AGTCTAGTTCAAGGTTCAAC+CGG - chr8_1:47354084-47354103 None:intergenic 40.0%
CCTTGAACTAGACTTTACTG+CGG + chr8_1:47354090-47354109 Msa1197110:intron 40.0%
GGATTTGAACTGCTTGAACT+TGG - chr8_1:47354133-47354152 None:intergenic 40.0%
CCTGCAAGTCTAACACATTA+AGG - chr8_1:47354397-47354416 None:intergenic 40.0%
CCTTAATGTGTTAGACTTGC+AGG + chr8_1:47354394-47354413 Msa1197110:CDS 40.0%
GGCAATTTAGTCCCTCAAAT+TGG - chr8_1:47354764-47354783 None:intergenic 40.0%
!! CCTTTGACTTGAGACTTGTT+GGG - chr8_1:47354785-47354804 None:intergenic 40.0%
!! TCCTTTGACTTGAGACTTGT+TGG - chr8_1:47354786-47354805 None:intergenic 40.0%
!!! CAATTACTGGTTTTGGAAGG+CGG - chr8_1:47354955-47354974 None:intergenic 40.0%
CTAACATTAACACAGGTTGC+AGG + chr8_1:47355049-47355068 Msa1197110:CDS 40.0%
! AGGAGGGCATATATTGCATA+TGG + chr8_1:47355084-47355103 Msa1197110:CDS 40.0%
GATAGCATTATCTGCTGCAA+TGG - chr8_1:47355122-47355141 None:intergenic 40.0%
GCAGCAGATAATGCTATCTT+TGG + chr8_1:47355124-47355143 Msa1197110:CDS 40.0%
AATGCTATCTTTGGCCAAAC+TGG + chr8_1:47355133-47355152 Msa1197110:CDS 40.0%
TACAAAAGACGAAAAGGGGA+TGG - chr8_1:47355244-47355263 None:intergenic 40.0%
ATGTGCTTCTCAATACAGGT+AGG + chr8_1:47355410-47355429 Msa1197110:intron 40.0%
GTGAAATGTGGTTTCTCACA+AGG + chr8_1:47355447-47355466 Msa1197110:CDS 40.0%
GCTGTTGAAGCAGAGAAAAT+GGG + chr8_1:47355479-47355498 Msa1197110:CDS 40.0%
AGTGGTGAGTGTTCTATGAA+TGG - chr8_1:47355544-47355563 None:intergenic 40.0%
ATTCGAACGTGAGAAATGGA+AGG - chr8_1:47355612-47355631 None:intergenic 40.0%
AGACATTCGAACGTGAGAAA+TGG - chr8_1:47355616-47355635 None:intergenic 40.0%
GAAATAGCCCAACCACAATT+CGG + chr8_1:47355903-47355922 Msa1197110:CDS 40.0%
AAATAGCCCAACCACAATTC+GGG + chr8_1:47355904-47355923 Msa1197110:CDS 40.0%
GCTATTAATGCAGTGGATGA+CGG + chr8_1:47355938-47355957 Msa1197110:CDS 40.0%
CTATTAATGCAGTGGATGAC+GGG + chr8_1:47355939-47355958 Msa1197110:CDS 40.0%
!! CATACATATGCTCTAAGGGA+AGG - chr8_1:47356061-47356080 None:intergenic 40.0%
!! ATGATGATGATGGTGGGAGT+GGG - chr8_1:47353065-47353084 None:intergenic 45.0%
ATGTTGGAGAGGAAACAAGG+TGG - chr8_1:47353193-47353212 None:intergenic 45.0%
! GGTGGTGGTGATATTGATGT+TGG - chr8_1:47353209-47353228 None:intergenic 45.0%
GAACATCACCATGAACACGT+TGG - chr8_1:47353265-47353284 None:intergenic 45.0%
CTTGGCAATTCCTTCACCAA+CGG - chr8_1:47353369-47353388 None:intergenic 45.0%
!! CGAAAAGCATTCCTTCTCTC+AGG - chr8_1:47353608-47353627 None:intergenic 45.0%
ATCAGCTCCTTAATCGTGTG+AGG - chr8_1:47353632-47353651 None:intergenic 45.0%
GAGAATGATGACACCAACAG+AGG - chr8_1:47353684-47353703 None:intergenic 45.0%
!! GTTGGTGTCATCATTCTCAC+TGG + chr8_1:47353686-47353705 Msa1197110:CDS 45.0%
ACCAAACCATACGGTTCAAC+CGG + chr8_1:47354062-47354081 Msa1197110:intron 45.0%
! CCGCAGTAAAGTCTAGTTCA+AGG - chr8_1:47354093-47354112 None:intergenic 45.0%
GCTTGAACTTGGACGAAACT+GGG - chr8_1:47354122-47354141 None:intergenic 45.0%
TGCTTGAACTTGGACGAAAC+TGG - chr8_1:47354123-47354142 None:intergenic 45.0%
! ATAACCATCTGGAGTCCTCA+AGG - chr8_1:47354351-47354370 None:intergenic 45.0%
AACCGGCCCTTACAATTTGA+CGG - chr8_1:47354581-47354600 None:intergenic 45.0%
CCCAACAAGTCTCAAGTCAA+AGG + chr8_1:47354782-47354801 Msa1197110:intron 45.0%
! CTATCATGTCACGTTTGGTG+AGG + chr8_1:47355320-47355339 Msa1197110:intron 45.0%
GGCTGTTGAAGCAGAGAAAA+TGG + chr8_1:47355478-47355497 Msa1197110:CDS 45.0%
TGGAATGGAAGGAAGCTTAC+TGG - chr8_1:47355524-47355543 None:intergenic 45.0%
TGAGAACCCGAATTGTGGTT+GGG - chr8_1:47355913-47355932 None:intergenic 45.0%
TTGAGAACCCGAATTGTGGT+TGG - chr8_1:47355914-47355933 None:intergenic 45.0%
! AACCACAATTCGGGTTCTCA+AGG + chr8_1:47355913-47355932 Msa1197110:CDS 45.0%
CAAGGCAGCTATTAATGCAG+TGG + chr8_1:47355931-47355950 Msa1197110:CDS 45.0%
! GGCACTGAAGAAGCAAATGA+AGG + chr8_1:47356146-47356165 Msa1197110:CDS 45.0%
!!! TTTTGTAAAATTTATTTTAT+AGG + chr8_1:47353748-47353767 Msa1197110:intron 5.0%
!!! TTTGTAAAATTTATTTTATA+GGG + chr8_1:47353749-47353768 Msa1197110:intron 5.0%
!! GATGATGATGATGGTGGGAG+TGG - chr8_1:47353066-47353085 None:intergenic 50.0%
TGGAGAGGAAACAAGGTGGT+TGG - chr8_1:47353189-47353208 None:intergenic 50.0%
! CGTTGGTGAAGGAATTGCCA+AGG + chr8_1:47353367-47353386 Msa1197110:CDS 50.0%
GAAAGGTGGAAGGACAACCT+TGG - chr8_1:47353387-47353406 None:intergenic 50.0%
GCTAGAGATGATCCCTCTGT+TGG + chr8_1:47353668-47353687 Msa1197110:CDS 50.0%
GGGCATGTTGAGGCAAGAAA+TGG + chr8_1:47353769-47353788 Msa1197110:intron 50.0%
ACCGGTTGAACCGTATGGTT+TGG - chr8_1:47354066-47354085 None:intergenic 50.0%
GTTCAACCGGTTGAACCGTA+TGG - chr8_1:47354071-47354090 None:intergenic 50.0%
AATCCGTTGACGTGACTCAG+AGG + chr8_1:47354148-47354167 Msa1197110:intron 50.0%
AGACCTCTGAGTCACGTCAA+CGG - chr8_1:47354154-47354173 None:intergenic 50.0%
GGAACAGATGCGTTCTGTAG+TGG + chr8_1:47354314-47354333 Msa1197110:CDS 50.0%
ACAGATGCGTTCTGTAGTGG+TGG + chr8_1:47354317-47354336 Msa1197110:CDS 50.0%
GTCCGTCAAATTGTAAGGGC+CGG + chr8_1:47354576-47354595 Msa1197110:intron 50.0%
GGCGAATCTGCACCTGTAAT+AGG - chr8_1:47354934-47354953 None:intergenic 50.0%
CTTTGGCCAAACTGGTCCTA+AGG + chr8_1:47355141-47355160 Msa1197110:CDS 50.0%
! GAAGCACCTTAGGACCAGTT+TGG - chr8_1:47355150-47355169 None:intergenic 50.0%
! AAGGTTGGGAGCTTTGATGC+TGG + chr8_1:47355286-47355305 Msa1197110:intron 50.0%
! GGGAGCTTTGATGCTGGTTA+TGG + chr8_1:47355292-47355311 Msa1197110:CDS 50.0%
TGCCTTGAGAACCCGAATTG+TGG - chr8_1:47355918-47355937 None:intergenic 50.0%
GCGTCTTCGCTCCATATATG+CGG - chr8_1:47356177-47356196 None:intergenic 50.0%
! CATCTGGAGTCCTCAAGGCT+TGG - chr8_1:47354346-47354365 None:intergenic 55.0%
CAAGCCTTGAGGACTCCAGA+TGG + chr8_1:47354344-47354363 Msa1197110:CDS 55.0%
CAGGTTGCAGGGTATGCTGT+TGG + chr8_1:47355061-47355080 Msa1197110:CDS 55.0%
GTTGCAGGGTATGCTGTTGG+AGG + chr8_1:47355064-47355083 Msa1197110:CDS 55.0%
CAGGGTATGCTGTTGGAGGA+GGG + chr8_1:47355068-47355087 Msa1197110:CDS 55.0%
! GTGGTGGTGACCAAGCCTTG+AGG + chr8_1:47354333-47354352 Msa1197110:CDS 60.0%
GCAGGGTATGCTGTTGGAGG+AGG + chr8_1:47355067-47355086 Msa1197110:CDS 60.0%
! TGACGGGCACGCTGGACTTC+AGG + chr8_1:47355955-47355974 Msa1197110:CDS 65.0%
!! GCAGTGGATGACGGGCACGC+TGG + chr8_1:47355947-47355966 Msa1197110:CDS 70.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 47353010 47356453 47353010 ID=Msa1197110;Name=Msa1197110
chr8_1 mRNA 47353010 47356453 47353010 ID=Msa1197110-mRNA-1;Parent=Msa1197110;Name=Msa1197110-mRNA-1;_AED=0.11;_eAED=0.11;_QI=124|1|0.87|1|1|1|8|224|361
chr8_1 exon 47353010 47353388 47353010 ID=Msa1197110-mRNA-1:exon:14972;Parent=Msa1197110-mRNA-1
chr8_1 exon 47353590 47353712 47353590 ID=Msa1197110-mRNA-1:exon:14973;Parent=Msa1197110-mRNA-1
chr8_1 exon 47354314 47354415 47354314 ID=Msa1197110-mRNA-1:exon:14974;Parent=Msa1197110-mRNA-1
chr8_1 exon 47354941 47355162 47354941 ID=Msa1197110-mRNA-1:exon:14975;Parent=Msa1197110-mRNA-1
chr8_1 exon 47355289 47355336 47355289 ID=Msa1197110-mRNA-1:exon:14976;Parent=Msa1197110-mRNA-1
chr8_1 exon 47355428 47355523 47355428 ID=Msa1197110-mRNA-1:exon:14977;Parent=Msa1197110-mRNA-1
chr8_1 exon 47355854 47355976 47355854 ID=Msa1197110-mRNA-1:exon:14978;Parent=Msa1197110-mRNA-1
chr8_1 exon 47356113 47356453 47356113 ID=Msa1197110-mRNA-1:exon:14979;Parent=Msa1197110-mRNA-1
chr8_1 five_prime_UTR 47353010 47353133 47353010 ID=Msa1197110-mRNA-1:five_prime_utr;Parent=Msa1197110-mRNA-1
chr8_1 CDS 47353134 47353388 47353134 ID=Msa1197110-mRNA-1:cds;Parent=Msa1197110-mRNA-1
chr8_1 CDS 47353590 47353712 47353590 ID=Msa1197110-mRNA-1:cds;Parent=Msa1197110-mRNA-1
chr8_1 CDS 47354314 47354415 47354314 ID=Msa1197110-mRNA-1:cds;Parent=Msa1197110-mRNA-1
chr8_1 CDS 47354941 47355162 47354941 ID=Msa1197110-mRNA-1:cds;Parent=Msa1197110-mRNA-1
chr8_1 CDS 47355289 47355336 47355289 ID=Msa1197110-mRNA-1:cds;Parent=Msa1197110-mRNA-1
chr8_1 CDS 47355428 47355523 47355428 ID=Msa1197110-mRNA-1:cds;Parent=Msa1197110-mRNA-1
chr8_1 CDS 47355854 47355976 47355854 ID=Msa1197110-mRNA-1:cds;Parent=Msa1197110-mRNA-1
chr8_1 CDS 47356113 47356229 47356113 ID=Msa1197110-mRNA-1:cds;Parent=Msa1197110-mRNA-1
chr8_1 three_prime_UTR 47356230 47356453 47356230 ID=Msa1197110-mRNA-1:three_prime_utr;Parent=Msa1197110-mRNA-1
Gene Sequence

>Msa1197110

ATGGCAAACAACAAAGACATTGAAACAGTGATCAGAAGAGTCACTTCTGTAACCAACCACCTTGTTTCCTCTCCAACATCAATATCACCACCACCTCAACTTATTTCCTTGTGTCACACTTCAAGTTACCAACGTGTTCATGGTGATGTTCCTTCTCATGATGTTGTTTGGAAGGTTATTCCTTCAGATGATGATGAAGGAAAGGTTTTCACTGACATTGTCTATGAGAAATCCGTTGGTGAAGGAATTGCCAAGATTAGTATTAATAGGCCTGAGAGAAGGAATGCTTTTCGACCTCACACGATTAAGGAGCTGATTCGTGCTTTCAATGATGCTAGAGATGATCCCTCTGTTGGTGTCATCATTCTCACTGGAAAGGGAACAGATGCGTTCTGTAGTGGTGGTGACCAAGCCTTGAGGACTCCAGATGGTTATTCTGATCATGAAAATATCGGTCGCCTTAATGTGTTAGACTTGCAGGTGCAGATTCGCCGCCTTCCAAAACCAGTAATTGCAATGGTACTATCACTATTTACTCCAAATCTCACTTTTTTGTGCACAAAGCCTTCTGCAGCTGCAAATTATTTGCTAACATTAACACAGGTTGCAGGGTATGCTGTTGGAGGAGGGCATATATTGCATATGGTTTGTGATCTAACCATTGCAGCAGATAATGCTATCTTTGGCCAAACTGGTCCTAAGGTTGGGAGCTTTGATGCTGGTTATGGAAGTTCTATCATGTCACGTTTGGTAGGTCCTAAAAAAGCACGTGAAATGTGGTTTCTCACAAGGTTCTATACGGCTGTTGAAGCAGAGAAAATGGGCCTTATCAATACTGTTGTACCACTAGAGAATTTAGAAAAAGAAACAATCAAATGGTGTAGGGAGATACTGAGAAATAGCCCAACCACAATTCGGGTTCTCAAGGCAGCTATTAATGCAGTGGATGACGGGCACGCTGGACTTCAGGAAATGGGTGGAAATTCAACATTGATATTTTATGGCACTGAAGAAGCAAATGAAGGAAAAACCGCATATATGGAGCGAAGACGCCCAGATTTTTCTAAGTTTAATAGAAGACCATAA

Protein sequence

>Msa1197110

MANNKDIETVIRRVTSVTNHLVSSPTSISPPPQLISLCHTSSYQRVHGDVPSHDVVWKVIPSDDDEGKVFTDIVYEKSVGEGIAKISINRPERRNAFRPHTIKELIRAFNDARDDPSVGVIILTGKGTDAFCSGGDQALRTPDGYSDHENIGRLNVLDLQVQIRRLPKPVIAMVLSLFTPNLTFLCTKPSAAANYLLTLTQVAGYAVGGGHILHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLTRFYTAVEAEKMGLINTVVPLENLEKETIKWCREILRNSPTTIRVLKAAINAVDDGHAGLQEMGGNSTLIFYGTEEANEGKTAYMERRRPDFSKFNRRP*