AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0578900


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0578900 MtrunA17_Chr4g0043941 96.657 329 11 0 32 360 4 332 0.0 652
Msa0578900 MtrunA17_Chr6g0448821 27.010 311 191 4 74 350 52 360 2.45e-35 132
Msa0578900 MtrunA17_Chr5g0428941 24.333 300 223 4 49 347 187 483 1.60e-31 124
Msa0578900 MtrunA17_Chr5g0428941 22.727 220 161 3 71 290 141 351 1.18e-13 72.0
Msa0578900 MtrunA17_Chr4g0034981 25.850 294 213 5 56 347 296 586 9.93e-31 123
Msa0578900 MtrunA17_Chr2g0294671 26.374 273 195 4 75 347 217 483 1.41e-26 110
Msa0578900 MtrunA17_Chr2g0294671 29.605 152 105 2 137 288 207 356 3.54e-14 73.6
Msa0578900 MtrunA17_Chr2g0294671 23.451 226 162 3 29 251 278 495 1.17e-12 68.9
Msa0578900 MtrunA17_Chr1g0212691 22.115 312 199 5 75 347 145 451 6.56e-25 105
Msa0578900 MtrunA17_Chr1g0212691 24.675 231 148 3 73 278 82 311 1.42e-16 80.9
Msa0578900 MtrunA17_Chr5g0445491 27.820 266 178 6 70 326 188 448 1.72e-23 101
Msa0578900 MtrunA17_Chr5g0445491 27.948 229 161 3 69 296 226 451 3.22e-19 89.0
Msa0578900 MtrunA17_Chr2g0304101 23.600 250 181 4 97 346 65 304 8.98e-18 82.8
Msa0578900 MtrunA17_Chr5g0417641 26.754 228 152 3 125 346 74 292 1.23e-16 79.7
Msa0578900 MtrunA17_Chr7g0250261 29.032 217 134 5 144 350 77 283 1.27e-16 79.3
Msa0578900 MtrunA17_Chr0c29g0494001 29.032 217 134 5 144 350 77 283 1.27e-16 79.3
Msa0578900 MtrunA17_Chr2g0311181 23.789 227 159 4 124 347 85 300 2.95e-16 79.0
Msa0578900 MtrunA17_Chr2g0296191 22.892 332 235 9 28 352 177 494 9.67e-13 69.7
Msa0578900 MtrunA17_Chr8g0339041 21.269 268 199 5 45 312 63 318 7.04e-12 66.2
Msa0578900 MtrunA17_Chr8g0391881 20.243 247 193 4 74 319 127 370 7.32e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0578900 AT4G38160.4 66.154 325 108 2 32 354 4 328 2.32e-160 452
Msa0578900 AT4G38160.1 66.154 325 108 2 32 354 4 328 2.32e-160 452
Msa0578900 AT4G38160.2 66.358 324 107 2 33 354 5 328 9.11e-160 452
Msa0578900 AT4G38160.3 66.154 325 108 2 32 354 4 328 2.14e-159 452
Msa0578900 AT2G21710.1 25.776 322 199 8 65 349 277 595 1.97e-32 128
Msa0578900 AT1G78930.1 29.368 269 184 4 92 357 323 588 4.60e-31 124
Msa0578900 AT4G02990.2 21.935 310 204 3 74 347 184 491 4.29e-28 115
Msa0578900 AT4G02990.2 21.147 279 189 4 42 293 92 366 4.60e-16 79.7
Msa0578900 AT4G02990.1 21.935 310 204 3 74 347 184 491 4.29e-28 115
Msa0578900 AT4G02990.1 21.147 279 189 4 42 293 92 366 4.60e-16 79.7
Msa0578900 AT4G14605.2 27.757 263 184 4 85 347 212 468 2.50e-27 112
Msa0578900 AT4G14605.2 23.786 206 149 2 32 237 266 463 1.18e-13 72.4
Msa0578900 AT4G14605.1 27.757 263 184 4 85 347 212 468 2.50e-27 112
Msa0578900 AT4G14605.1 23.786 206 149 2 32 237 266 463 1.18e-13 72.4
Msa0578900 AT2G44020.1 24.679 312 191 5 75 347 150 456 5.71e-27 112
Msa0578900 AT2G44020.1 24.038 208 153 2 71 278 114 316 4.53e-16 79.7
Msa0578900 AT2G21710.2 25.442 283 171 8 65 310 277 556 1.02e-23 102
Msa0578900 AT2G21710.3 25.623 281 169 8 65 308 277 554 1.59e-23 102
Msa0578900 AT2G03050.1 27.004 237 166 4 112 347 39 269 3.07e-23 98.2
Msa0578900 AT2G03050.2 27.004 237 166 4 112 347 40 270 3.18e-23 98.2
Msa0578900 AT5G55580.2 25.475 263 176 6 74 326 83 335 1.31e-21 95.5
Msa0578900 AT5G55580.2 25.217 230 166 4 69 296 113 338 1.32e-18 86.7
Msa0578900 AT5G55580.1 25.475 263 176 6 74 326 189 441 3.53e-21 95.1
Msa0578900 AT5G55580.1 25.217 230 166 4 69 296 219 444 3.85e-18 85.9
Msa0578900 AT2G36000.2 26.562 192 134 2 156 346 122 307 3.61e-19 87.4
Msa0578900 AT2G36000.1 26.562 192 134 2 156 346 122 307 4.84e-19 87.4
Msa0578900 AT2G34620.1 23.529 204 154 1 144 347 90 291 7.42e-19 86.3
Msa0578900 AT2G34620.1 29.333 150 102 3 75 223 93 239 4.24e-12 66.6
Msa0578900 AT3G18870.1 29.851 201 135 5 152 350 76 272 5.76e-18 83.2
Msa0578900 AT5G54180.1 27.481 262 179 9 89 346 234 488 7.70e-18 85.1
Msa0578900 AT5G54180.1 22.713 317 201 9 15 296 61 368 7.96e-11 63.5
Msa0578900 AT5G55580.3 24.859 177 130 3 69 243 219 394 3.70e-14 73.6
Msa0578900 AT5G55580.3 25.116 215 141 6 74 278 189 393 7.66e-13 69.7
Msa0578900 AT1G21150.2 19.643 280 206 6 19 289 131 400 4.91e-11 64.3
Msa0578900 AT5G64950.1 29.448 163 108 5 118 278 52 209 5.84e-11 63.9
Msa0578900 AT1G21150.1 19.643 280 206 6 19 289 67 336 6.32e-11 63.5
Msa0578900 AT1G21150.3 19.643 280 206 6 19 289 31 300 8.68e-11 63.2

Find 73 sgRNAs with CRISPR-Local

Find 215 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGACCAAGTACAAGAATTT+TGG 0.151290 4_1:+83562913 None:intergenic
GATTAAGGACCCGTATATTA+TGG 0.175262 4_1:-83562597 Msa0578900:CDS
GCGAACGAGCCAATGAAAAT+TGG 0.202887 4_1:-83562997 Msa0578900:CDS
GATTAATTTGTAGAGTAAAA+TGG 0.249320 4_1:-83563137 Msa0578900:intron
AGAGAAGCTTTGTCCTCTTT+TGG 0.259572 4_1:-83562780 Msa0578900:CDS
CAAGAGTGTTCGGAATTCTT+TGG 0.260167 4_1:-83562357 Msa0578900:CDS
ATAAGTTATCCTTTGGATCT+AGG 0.275546 4_1:-83561932 Msa0578900:three_prime_UTR
ACACTATAACCCATAATATA+CGG 0.287612 4_1:+83562587 None:intergenic
CGAACACTCTTGATCAAAAT+AGG 0.322211 4_1:+83562368 None:intergenic
TTTGACTGAGCAGGATCTTC+AGG 0.331599 4_1:-83562519 Msa0578900:CDS
TTAAAGAACTGTGGATTTCA+TGG 0.334993 4_1:-83562425 Msa0578900:CDS
AAGAAGTTCCACTTGAAGTT+TGG 0.341154 4_1:-83562164 Msa0578900:CDS
TTGAAGTTTGGCTTGTTAGA+AGG 0.350213 4_1:-83562152 Msa0578900:CDS
TGGGAGTATTTGAAAACAAT+TGG 0.351216 4_1:-83562977 Msa0578900:CDS
TAGAGATGTGGATAAGGTTT+TGG 0.354515 4_1:-83562465 Msa0578900:CDS
TGGGTTATAGTGTTGATAAA+AGG 0.361012 4_1:-83562577 Msa0578900:CDS
TACGATAATAAGTTATCCTT+TGG 0.367913 4_1:-83561939 Msa0578900:three_prime_UTR
TGGCCGGCAGATAGTTGATT+TGG 0.380260 4_1:-83562405 Msa0578900:CDS
TGCCCCAAAATTCTTGTACT+TGG 0.381501 4_1:-83562917 Msa0578900:CDS
ATTAAGGACCCGTATATTAT+GGG 0.382034 4_1:-83562596 Msa0578900:CDS
CTTGATAAAGACGGAATGAT+TGG 0.389340 4_1:-83562629 Msa0578900:CDS
CTTCCGCGGAACAACCCTTC+AGG 0.395544 4_1:-83563300 Msa0578900:intron
GCTGCTGTTATTGCCGCTAC+TGG 0.445431 4_1:+83563111 None:intergenic
CGAACGAGCCAATGAAAATT+GGG 0.448262 4_1:-83562996 Msa0578900:CDS
TTTGAGTAGAGATGTGGATA+AGG 0.454342 4_1:-83562471 Msa0578900:CDS
CAGATAGTTGATTTGGTGGT+TGG 0.459004 4_1:-83562398 Msa0578900:CDS
GTGAAATTTCTTGCTAGTGT+TGG 0.461499 4_1:-83562653 Msa0578900:CDS
ATGCTATAACTAATAAGCCT+AGG 0.489054 4_1:+83562698 None:intergenic
CAATGAAAAGATTGTTCCAA+TGG 0.489343 4_1:-83562891 Msa0578900:CDS
TTGCAGCTTGAGTGAAATGC+TGG 0.494640 4_1:-83562198 Msa0578900:CDS
TATCCATGCTTCTTTCGTCA+TGG 0.501505 4_1:-83562275 Msa0578900:CDS
TTGTTCCGCGGAAGCAGATA+AGG 0.505527 4_1:+83563309 None:intergenic
GTCGATAGGTTTGACTGAGC+AGG 0.509092 4_1:-83562528 Msa0578900:CDS
CCGGCAGATAGTTGATTTGG+TGG 0.512541 4_1:-83562402 Msa0578900:CDS
ACACTACAAGAGAGTATTTG+AGG 0.513102 4_1:+83562806 None:intergenic
AGAACTGTGGATTTCATGGC+CGG 0.517285 4_1:-83562421 Msa0578900:CDS
AAGCAGATAAGGCAGTGAAA+TGG 0.524851 4_1:+83563320 None:intergenic
ATGATGGCAGAGGAACCCTT+TGG 0.528089 4_1:+83561880 None:intergenic
AGTGAAATGGCGAAGGAAAG+AGG 0.529083 4_1:+83563333 None:intergenic
CACTATAACCCATAATATAC+GGG 0.530664 4_1:+83562588 None:intergenic
ATCCTTTGGATCTAGGATTG+AGG 0.531154 4_1:-83561925 Msa0578900:three_prime_UTR
TGCATGGCAATGGGTACCAA+AGG 0.535403 4_1:-83561896 Msa0578900:three_prime_UTR
AGGATTGAGGCGTGTTTGCA+TGG 0.536799 4_1:-83561912 Msa0578900:three_prime_UTR
GAGGCGTGTTTGCATGGCAA+TGG 0.536826 4_1:-83561906 Msa0578900:three_prime_UTR
AGGCGTGTTTGCATGGCAAT+GGG 0.544451 4_1:-83561905 Msa0578900:three_prime_UTR
CACTACAAGAGAGTATTTGA+GGG 0.546905 4_1:+83562807 None:intergenic
TGCTATAACTAATAAGCCTA+GGG 0.547400 4_1:+83562699 None:intergenic
TAAAAGGCTTCGTCCTACTT+CGG 0.555828 4_1:-83562561 Msa0578900:CDS
CTAACAAGCCAAACTTCAAG+TGG 0.558319 4_1:+83562156 None:intergenic
GTGTTGAGACATTCAACCAT+TGG 0.559854 4_1:+83562875 None:intergenic
CGCCTCAATCCTAGATCCAA+AGG 0.566885 4_1:+83561923 None:intergenic
CACTGCCTTATCTGCTTCCG+CGG 0.567849 4_1:-83563314 Msa0578900:CDS
GCATGGCAATGGGTACCAAA+GGG 0.582818 4_1:-83561895 Msa0578900:three_prime_UTR
TTCGGAATTCTTTGGAACCG+AGG 0.584467 4_1:-83562349 Msa0578900:CDS
ATACGGAAGGTGCTCAACAT+CGG 0.595526 4_1:+83562031 None:intergenic
TCAAATACTCTCTTGTAGTG+TGG 0.603146 4_1:-83562804 Msa0578900:CDS
ATAGCAGATGCAACTTCATG+AGG 0.606629 4_1:+83562839 None:intergenic
TGTTAGCACAATTACCTGAA+GGG 0.608327 4_1:+83563286 None:intergenic
ACGACATGGGTATGATGGGT+CGG 0.608942 4_1:-83563430 None:intergenic
AGGACATACTTTGAGTAACT+AGG 0.611172 4_1:-83562132 Msa0578900:exon
CGGAAGGTGCTCAACATCGG+CGG 0.611725 4_1:+83562034 None:intergenic
CTAGTGTCTTATGATGGCAG+AGG 0.620381 4_1:+83561870 None:intergenic
AGGCCATGACGAAAGAAGCA+TGG 0.620961 4_1:+83562272 None:intergenic
ACACTCTTGATCAAAATAGG+AGG 0.622517 4_1:+83562371 None:intergenic
CCACCAAATCAACTATCTGC+CGG 0.624823 4_1:+83562402 None:intergenic
TAGCATTGAGACGAAGATGA+CGG 0.632455 4_1:-83562681 Msa0578900:CDS
GGCACAAGCTCTTAAAGCAG+AGG 0.635201 4_1:-83562229 Msa0578900:CDS
AGTGTTGGTCTTGATAAAGA+CGG 0.642183 4_1:-83562638 Msa0578900:CDS
TTACCTGAAGGGTTGTTCCG+CGG 0.642744 4_1:+83563297 None:intergenic
AGTAAAATGGAAACCAGTAG+CGG 0.644038 4_1:-83563124 Msa0578900:CDS
ACATCTCTACTCAAAATCGA+CGG 0.644998 4_1:+83562479 None:intergenic
ATAACAGCAGCAACATGATG+TGG 0.646285 4_1:-83563099 Msa0578900:CDS
ATAAGGCAGTGAAATGGCGA+AGG 0.654610 4_1:+83563326 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATCACAACAATTTTAATA+CGG + chr4_1:83563290-83563309 None:intergenic 15.0%
!!! AAATCACAACAATTTTAATA+CGG + chr4_1:83563290-83563309 None:intergenic 15.0%
!! AAGAAGAAGTAGAATATAAA+TGG + chr4_1:83562058-83562077 None:intergenic 20.0%
!! TTTACTCTACAAATTAATCA+TGG + chr4_1:83562163-83562182 None:intergenic 20.0%
!!! GATTAATTTGTAGAGTAAAA+TGG - chr4_1:83562164-83562183 Msa0578900:CDS 20.0%
!!! AAATTTTATTGTTAAACCCT+AGG - chr4_1:83562586-83562605 Msa0578900:CDS 20.0%
!! GATTGGAAAAATTATGATTA+AGG - chr4_1:83562689-83562708 Msa0578900:CDS 20.0%
!!! TATGATTTTTTAAAGAACTG+TGG - chr4_1:83562867-83562886 Msa0578900:CDS 20.0%
!! AAGAAGAAGTAGAATATAAA+TGG + chr4_1:83562058-83562077 None:intergenic 20.0%
!! TTTACTCTACAAATTAATCA+TGG + chr4_1:83562163-83562182 None:intergenic 20.0%
!!! GATTAATTTGTAGAGTAAAA+TGG - chr4_1:83562164-83562183 Msa0578900:CDS 20.0%
!!! AAATTTTATTGTTAAACCCT+AGG - chr4_1:83562586-83562605 Msa0578900:CDS 20.0%
!! GATTGGAAAAATTATGATTA+AGG - chr4_1:83562689-83562708 Msa0578900:CDS 20.0%
!!! TATGATTTTTTAAAGAACTG+TGG - chr4_1:83562867-83562886 Msa0578900:CDS 20.0%
! AAATGGAGAAATTAACGTAA+GGG + chr4_1:83562041-83562060 None:intergenic 25.0%
! TAAATGGAGAAATTAACGTA+AGG + chr4_1:83562042-83562061 None:intergenic 25.0%
!!! TGTGAACATTTTTTGTATGA+TGG + chr4_1:83562256-83562275 None:intergenic 25.0%
!!! TTGGCATTTTTTCAAACATT+AGG - chr4_1:83562540-83562559 Msa0578900:CDS 25.0%
!!! AATTTTCCCGATTTGTTTTT+CGG + chr4_1:83562571-83562590 None:intergenic 25.0%
! ACACTATAACCCATAATATA+CGG + chr4_1:83562717-83562736 None:intergenic 25.0%
!!! AAGTTTTTGGTAGATGTAAT+GGG - chr4_1:83562978-83562997 Msa0578900:CDS 25.0%
! TACGATAATAAGTTATCCTT+TGG - chr4_1:83563362-83563381 Msa0578900:intron 25.0%
! AAATGGAGAAATTAACGTAA+GGG + chr4_1:83562041-83562060 None:intergenic 25.0%
! TAAATGGAGAAATTAACGTA+AGG + chr4_1:83562042-83562061 None:intergenic 25.0%
!!! TGTGAACATTTTTTGTATGA+TGG + chr4_1:83562256-83562275 None:intergenic 25.0%
!!! TTGGCATTTTTTCAAACATT+AGG - chr4_1:83562540-83562559 Msa0578900:CDS 25.0%
!!! AATTTTCCCGATTTGTTTTT+CGG + chr4_1:83562571-83562590 None:intergenic 25.0%
! ACACTATAACCCATAATATA+CGG + chr4_1:83562717-83562736 None:intergenic 25.0%
!!! AAGTTTTTGGTAGATGTAAT+GGG - chr4_1:83562978-83562997 Msa0578900:CDS 25.0%
! TACGATAATAAGTTATCCTT+TGG - chr4_1:83563362-83563381 Msa0578900:intron 25.0%
! CAAATACTCCCAATTTTCAT+TGG + chr4_1:83562316-83562335 None:intergenic 30.0%
!! TGGGAGTATTTGAAAACAAT+TGG - chr4_1:83562324-83562343 Msa0578900:CDS 30.0%
! AGACCAAGTACAAGAATTTT+GGG + chr4_1:83562390-83562409 None:intergenic 30.0%
CAATGAAAAGATTGTTCCAA+TGG - chr4_1:83562410-83562429 Msa0578900:CDS 30.0%
GTTTGAAAAAATGCCAAAAG+AGG + chr4_1:83562537-83562556 None:intergenic 30.0%
!! ATTTTCCCGATTTGTTTTTC+GGG + chr4_1:83562570-83562589 None:intergenic 30.0%
TGCTATAACTAATAAGCCTA+GGG + chr4_1:83562605-83562624 None:intergenic 30.0%
ATGCTATAACTAATAAGCCT+AGG + chr4_1:83562606-83562625 None:intergenic 30.0%
ATTAAGGACCCGTATATTAT+GGG - chr4_1:83562705-83562724 Msa0578900:CDS 30.0%
CACTATAACCCATAATATAC+GGG + chr4_1:83562716-83562735 None:intergenic 30.0%
!! TGGGTTATAGTGTTGATAAA+AGG - chr4_1:83562724-83562743 Msa0578900:CDS 30.0%
TTAAAGAACTGTGGATTTCA+TGG - chr4_1:83562876-83562895 Msa0578900:CDS 30.0%
!!! CTATTTTGATCAAGAGTGTT+CGG - chr4_1:83562934-83562953 Msa0578900:CDS 30.0%
!!! CAAGTTTTTGGTAGATGTAA+TGG - chr4_1:83562977-83562996 Msa0578900:CDS 30.0%
!! CACAACAATTTTAATACGGA+AGG + chr4_1:83563286-83563305 None:intergenic 30.0%
ATAAGTTATCCTTTGGATCT+AGG - chr4_1:83563369-83563388 Msa0578900:intron 30.0%
! CAAATACTCCCAATTTTCAT+TGG + chr4_1:83562316-83562335 None:intergenic 30.0%
!! TGGGAGTATTTGAAAACAAT+TGG - chr4_1:83562324-83562343 Msa0578900:CDS 30.0%
! AGACCAAGTACAAGAATTTT+GGG + chr4_1:83562390-83562409 None:intergenic 30.0%
CAATGAAAAGATTGTTCCAA+TGG - chr4_1:83562410-83562429 Msa0578900:CDS 30.0%
GTTTGAAAAAATGCCAAAAG+AGG + chr4_1:83562537-83562556 None:intergenic 30.0%
!! ATTTTCCCGATTTGTTTTTC+GGG + chr4_1:83562570-83562589 None:intergenic 30.0%
TGCTATAACTAATAAGCCTA+GGG + chr4_1:83562605-83562624 None:intergenic 30.0%
ATGCTATAACTAATAAGCCT+AGG + chr4_1:83562606-83562625 None:intergenic 30.0%
ATTAAGGACCCGTATATTAT+GGG - chr4_1:83562705-83562724 Msa0578900:CDS 30.0%
CACTATAACCCATAATATAC+GGG + chr4_1:83562716-83562735 None:intergenic 30.0%
!! TGGGTTATAGTGTTGATAAA+AGG - chr4_1:83562724-83562743 Msa0578900:CDS 30.0%
TTAAAGAACTGTGGATTTCA+TGG - chr4_1:83562876-83562895 Msa0578900:CDS 30.0%
!!! CTATTTTGATCAAGAGTGTT+CGG - chr4_1:83562934-83562953 Msa0578900:CDS 30.0%
!!! CAAGTTTTTGGTAGATGTAA+TGG - chr4_1:83562977-83562996 Msa0578900:CDS 30.0%
!! CACAACAATTTTAATACGGA+AGG + chr4_1:83563286-83563305 None:intergenic 30.0%
ATAAGTTATCCTTTGGATCT+AGG - chr4_1:83563369-83563388 Msa0578900:intron 30.0%
TGTTAGCACAATTACCTGAA+GGG + chr4_1:83562018-83562037 None:intergenic 35.0%
AGTAAAATGGAAACCAGTAG+CGG - chr4_1:83562177-83562196 Msa0578900:CDS 35.0%
! CAACATGATGTGGTTTTTCA+AGG - chr4_1:83562212-83562231 Msa0578900:CDS 35.0%
!!! GGGCATTTTGAAACAATTGA+AGG + chr4_1:83562369-83562388 None:intergenic 35.0%
! GACCAAGTACAAGAATTTTG+GGG + chr4_1:83562389-83562408 None:intergenic 35.0%
! GAGACCAAGTACAAGAATTT+TGG + chr4_1:83562391-83562410 None:intergenic 35.0%
!! CACTACAAGAGAGTATTTGA+GGG + chr4_1:83562497-83562516 None:intergenic 35.0%
!! ACACTACAAGAGAGTATTTG+AGG + chr4_1:83562498-83562517 None:intergenic 35.0%
TCAAATACTCTCTTGTAGTG+TGG - chr4_1:83562497-83562516 Msa0578900:CDS 35.0%
GTGAAATTTCTTGCTAGTGT+TGG - chr4_1:83562648-83562667 Msa0578900:CDS 35.0%
!! AGTGTTGGTCTTGATAAAGA+CGG - chr4_1:83562663-83562682 Msa0578900:CDS 35.0%
CTTGATAAAGACGGAATGAT+TGG - chr4_1:83562672-83562691 Msa0578900:CDS 35.0%
GATTAAGGACCCGTATATTA+TGG - chr4_1:83562704-83562723 Msa0578900:CDS 35.0%
ACATCTCTACTCAAAATCGA+CGG + chr4_1:83562825-83562844 None:intergenic 35.0%
TTTGAGTAGAGATGTGGATA+AGG - chr4_1:83562830-83562849 Msa0578900:CDS 35.0%
! TAGAGATGTGGATAAGGTTT+TGG - chr4_1:83562836-83562855 Msa0578900:CDS 35.0%
ACACTCTTGATCAAAATAGG+AGG + chr4_1:83562933-83562952 None:intergenic 35.0%
CGAACACTCTTGATCAAAAT+AGG + chr4_1:83562936-83562955 None:intergenic 35.0%
TCTACCAAAAACTTGATCCT+CGG + chr4_1:83562972-83562991 None:intergenic 35.0%
TCATGGCCTGAAGAAAAAAT+TGG - chr4_1:83563043-83563062 Msa0578900:CDS 35.0%
!! TGAAGAAAAAATTGGTGTCG+CGG - chr4_1:83563051-83563070 Msa0578900:CDS 35.0%
AAGAAGTTCCACTTGAAGTT+TGG - chr4_1:83563137-83563156 Msa0578900:intron 35.0%
!! TTGAAGTTTGGCTTGTTAGA+AGG - chr4_1:83563149-83563168 Msa0578900:intron 35.0%
AGGACATACTTTGAGTAACT+AGG - chr4_1:83563169-83563188 Msa0578900:intron 35.0%
TGTTAGCACAATTACCTGAA+GGG + chr4_1:83562018-83562037 None:intergenic 35.0%
AGTAAAATGGAAACCAGTAG+CGG - chr4_1:83562177-83562196 Msa0578900:CDS 35.0%
! CAACATGATGTGGTTTTTCA+AGG - chr4_1:83562212-83562231 Msa0578900:CDS 35.0%
!!! GGGCATTTTGAAACAATTGA+AGG + chr4_1:83562369-83562388 None:intergenic 35.0%
! GACCAAGTACAAGAATTTTG+GGG + chr4_1:83562389-83562408 None:intergenic 35.0%
! GAGACCAAGTACAAGAATTT+TGG + chr4_1:83562391-83562410 None:intergenic 35.0%
!! CACTACAAGAGAGTATTTGA+GGG + chr4_1:83562497-83562516 None:intergenic 35.0%
!! ACACTACAAGAGAGTATTTG+AGG + chr4_1:83562498-83562517 None:intergenic 35.0%
TCAAATACTCTCTTGTAGTG+TGG - chr4_1:83562497-83562516 Msa0578900:CDS 35.0%
GTGAAATTTCTTGCTAGTGT+TGG - chr4_1:83562648-83562667 Msa0578900:CDS 35.0%
!! AGTGTTGGTCTTGATAAAGA+CGG - chr4_1:83562663-83562682 Msa0578900:CDS 35.0%
CTTGATAAAGACGGAATGAT+TGG - chr4_1:83562672-83562691 Msa0578900:CDS 35.0%
GATTAAGGACCCGTATATTA+TGG - chr4_1:83562704-83562723 Msa0578900:CDS 35.0%
ACATCTCTACTCAAAATCGA+CGG + chr4_1:83562825-83562844 None:intergenic 35.0%
TTTGAGTAGAGATGTGGATA+AGG - chr4_1:83562830-83562849 Msa0578900:CDS 35.0%
! TAGAGATGTGGATAAGGTTT+TGG - chr4_1:83562836-83562855 Msa0578900:CDS 35.0%
ACACTCTTGATCAAAATAGG+AGG + chr4_1:83562933-83562952 None:intergenic 35.0%
CGAACACTCTTGATCAAAAT+AGG + chr4_1:83562936-83562955 None:intergenic 35.0%
TCTACCAAAAACTTGATCCT+CGG + chr4_1:83562972-83562991 None:intergenic 35.0%
TCATGGCCTGAAGAAAAAAT+TGG - chr4_1:83563043-83563062 Msa0578900:CDS 35.0%
!! TGAAGAAAAAATTGGTGTCG+CGG - chr4_1:83563051-83563070 Msa0578900:CDS 35.0%
AAGAAGTTCCACTTGAAGTT+TGG - chr4_1:83563137-83563156 Msa0578900:intron 35.0%
!! TTGAAGTTTGGCTTGTTAGA+AGG - chr4_1:83563149-83563168 Msa0578900:intron 35.0%
AGGACATACTTTGAGTAACT+AGG - chr4_1:83563169-83563188 Msa0578900:intron 35.0%
AACTGAAGAAGAAGACAGCA+TGG + chr4_1:83561927-83561946 None:intergenic 40.0%
AAGCAGATAAGGCAGTGAAA+TGG + chr4_1:83561984-83562003 None:intergenic 40.0%
GTGTTAGCACAATTACCTGA+AGG + chr4_1:83562019-83562038 None:intergenic 40.0%
ATAACAGCAGCAACATGATG+TGG - chr4_1:83562202-83562221 Msa0578900:CDS 40.0%
!!! ATGTGGTTTTTCAAGGACAG+AGG - chr4_1:83562219-83562238 Msa0578900:CDS 40.0%
CGAACGAGCCAATGAAAATT+GGG - chr4_1:83562305-83562324 Msa0578900:CDS 40.0%
TGCCCCAAAATTCTTGTACT+TGG - chr4_1:83562384-83562403 Msa0578900:CDS 40.0%
GTGTTGAGACATTCAACCAT+TGG + chr4_1:83562429-83562448 None:intergenic 40.0%
ATAGCAGATGCAACTTCATG+AGG + chr4_1:83562465-83562484 None:intergenic 40.0%
!! AGAGAAGCTTTGTCCTCTTT+TGG - chr4_1:83562521-83562540 Msa0578900:CDS 40.0%
! TAGCATTGAGACGAAGATGA+CGG - chr4_1:83562620-83562639 Msa0578900:CDS 40.0%
TAAAAGGCTTCGTCCTACTT+CGG - chr4_1:83562740-83562759 Msa0578900:CDS 40.0%
GACTTCAAAAACTCCGAAGT+AGG + chr4_1:83562756-83562775 None:intergenic 40.0%
!!! TCGGAGTTTTTGAAGTCGAT+AGG - chr4_1:83562759-83562778 Msa0578900:CDS 40.0%
!! GTCGATTTTGAGTAGAGATG+TGG - chr4_1:83562824-83562843 Msa0578900:CDS 40.0%
!! CAGATAGTTGATTTGGTGGT+TGG - chr4_1:83562903-83562922 Msa0578900:CDS 40.0%
!! CAAGAGTGTTCGGAATTCTT+TGG - chr4_1:83562944-83562963 Msa0578900:CDS 40.0%
TATCCATGCTTCTTTCGTCA+TGG - chr4_1:83563026-83563045 Msa0578900:CDS 40.0%
!!! GCGACACCAATTTTTTCTTC+AGG + chr4_1:83563052-83563071 None:intergenic 40.0%
CTAACAAGCCAAACTTCAAG+TGG + chr4_1:83563148-83563167 None:intergenic 40.0%
! ATCCTTTGGATCTAGGATTG+AGG - chr4_1:83563376-83563395 Msa0578900:intron 40.0%
TATAGATTCTTACCGACCCA+TGG + chr4_1:83561886-83561905 None:intergenic 40.0%
AACTGAAGAAGAAGACAGCA+TGG + chr4_1:83561927-83561946 None:intergenic 40.0%
AAGCAGATAAGGCAGTGAAA+TGG + chr4_1:83561984-83562003 None:intergenic 40.0%
GTGTTAGCACAATTACCTGA+AGG + chr4_1:83562019-83562038 None:intergenic 40.0%
ATAACAGCAGCAACATGATG+TGG - chr4_1:83562202-83562221 Msa0578900:CDS 40.0%
!!! ATGTGGTTTTTCAAGGACAG+AGG - chr4_1:83562219-83562238 Msa0578900:CDS 40.0%
CGAACGAGCCAATGAAAATT+GGG - chr4_1:83562305-83562324 Msa0578900:CDS 40.0%
TGCCCCAAAATTCTTGTACT+TGG - chr4_1:83562384-83562403 Msa0578900:CDS 40.0%
GTGTTGAGACATTCAACCAT+TGG + chr4_1:83562429-83562448 None:intergenic 40.0%
ATAGCAGATGCAACTTCATG+AGG + chr4_1:83562465-83562484 None:intergenic 40.0%
!! AGAGAAGCTTTGTCCTCTTT+TGG - chr4_1:83562521-83562540 Msa0578900:CDS 40.0%
! TAGCATTGAGACGAAGATGA+CGG - chr4_1:83562620-83562639 Msa0578900:CDS 40.0%
TAAAAGGCTTCGTCCTACTT+CGG - chr4_1:83562740-83562759 Msa0578900:CDS 40.0%
GACTTCAAAAACTCCGAAGT+AGG + chr4_1:83562756-83562775 None:intergenic 40.0%
!!! TCGGAGTTTTTGAAGTCGAT+AGG - chr4_1:83562759-83562778 Msa0578900:CDS 40.0%
!! GTCGATTTTGAGTAGAGATG+TGG - chr4_1:83562824-83562843 Msa0578900:CDS 40.0%
!! CAGATAGTTGATTTGGTGGT+TGG - chr4_1:83562903-83562922 Msa0578900:CDS 40.0%
!! CAAGAGTGTTCGGAATTCTT+TGG - chr4_1:83562944-83562963 Msa0578900:CDS 40.0%
TATCCATGCTTCTTTCGTCA+TGG - chr4_1:83563026-83563045 Msa0578900:CDS 40.0%
!!! GCGACACCAATTTTTTCTTC+AGG + chr4_1:83563052-83563071 None:intergenic 40.0%
CTAACAAGCCAAACTTCAAG+TGG + chr4_1:83563148-83563167 None:intergenic 40.0%
! ATCCTTTGGATCTAGGATTG+AGG - chr4_1:83563376-83563395 Msa0578900:intron 40.0%
GAAGAAGAAGACAGCATGGA+TGG + chr4_1:83561923-83561942 None:intergenic 45.0%
AGTGAAATGGCGAAGGAAAG+AGG + chr4_1:83561971-83561990 None:intergenic 45.0%
ATAAGGCAGTGAAATGGCGA+AGG + chr4_1:83561978-83561997 None:intergenic 45.0%
GCGAACGAGCCAATGAAAAT+TGG - chr4_1:83562304-83562323 Msa0578900:CDS 45.0%
GGTGTGCCCGAAAAACAAAT+CGG - chr4_1:83562561-83562580 Msa0578900:CDS 45.0%
GTGTGCCCGAAAAACAAATC+GGG - chr4_1:83562562-83562581 Msa0578900:CDS 45.0%
TTTGACTGAGCAGGATCTTC+AGG - chr4_1:83562782-83562801 Msa0578900:CDS 45.0%
AGAACTGTGGATTTCATGGC+CGG - chr4_1:83562880-83562899 Msa0578900:CDS 45.0%
CCACCAAATCAACTATCTGC+CGG + chr4_1:83562902-83562921 None:intergenic 45.0%
!! TTCGGAATTCTTTGGAACCG+AGG - chr4_1:83562952-83562971 Msa0578900:CDS 45.0%
! GGAACCGAGGATCAAGTTTT+TGG - chr4_1:83562965-83562984 Msa0578900:CDS 45.0%
TTGCAGCTTGAGTGAAATGC+TGG - chr4_1:83563103-83563122 Msa0578900:CDS 45.0%
!! ATACGGAAGGTGCTCAACAT+CGG + chr4_1:83563273-83563292 None:intergenic 45.0%
GAAGAAGAAGACAGCATGGA+TGG + chr4_1:83561923-83561942 None:intergenic 45.0%
AGTGAAATGGCGAAGGAAAG+AGG + chr4_1:83561971-83561990 None:intergenic 45.0%
ATAAGGCAGTGAAATGGCGA+AGG + chr4_1:83561978-83561997 None:intergenic 45.0%
GCGAACGAGCCAATGAAAAT+TGG - chr4_1:83562304-83562323 Msa0578900:CDS 45.0%
GGTGTGCCCGAAAAACAAAT+CGG - chr4_1:83562561-83562580 Msa0578900:CDS 45.0%
GTGTGCCCGAAAAACAAATC+GGG - chr4_1:83562562-83562581 Msa0578900:CDS 45.0%
TTTGACTGAGCAGGATCTTC+AGG - chr4_1:83562782-83562801 Msa0578900:CDS 45.0%
AGAACTGTGGATTTCATGGC+CGG - chr4_1:83562880-83562899 Msa0578900:CDS 45.0%
CCACCAAATCAACTATCTGC+CGG + chr4_1:83562902-83562921 None:intergenic 45.0%
!! TTCGGAATTCTTTGGAACCG+AGG - chr4_1:83562952-83562971 Msa0578900:CDS 45.0%
! GGAACCGAGGATCAAGTTTT+TGG - chr4_1:83562965-83562984 Msa0578900:CDS 45.0%
TTGCAGCTTGAGTGAAATGC+TGG - chr4_1:83563103-83563122 Msa0578900:CDS 45.0%
!! ATACGGAAGGTGCTCAACAT+CGG + chr4_1:83563273-83563292 None:intergenic 45.0%
AGACAGCATGGATGGAGAAG+AGG + chr4_1:83561915-83561934 None:intergenic 50.0%
TTGTTCCGCGGAAGCAGATA+AGG + chr4_1:83561995-83562014 None:intergenic 50.0%
TTACCTGAAGGGTTGTTCCG+CGG + chr4_1:83562007-83562026 None:intergenic 50.0%
GTCGATAGGTTTGACTGAGC+AGG - chr4_1:83562773-83562792 Msa0578900:CDS 50.0%
TGGCCGGCAGATAGTTGATT+TGG - chr4_1:83562896-83562915 Msa0578900:CDS 50.0%
!! CCGGCAGATAGTTGATTTGG+TGG - chr4_1:83562899-83562918 Msa0578900:CDS 50.0%
AGGCCATGACGAAAGAAGCA+TGG + chr4_1:83563032-83563051 None:intergenic 50.0%
GGCACAAGCTCTTAAAGCAG+AGG - chr4_1:83563072-83563091 Msa0578900:CDS 50.0%
CGCCTCAATCCTAGATCCAA+AGG + chr4_1:83563381-83563400 None:intergenic 50.0%
AGGATTGAGGCGTGTTTGCA+TGG - chr4_1:83563389-83563408 Msa0578900:intron 50.0%
AGGCGTGTTTGCATGGCAAT+GGG - chr4_1:83563396-83563415 Msa0578900:intron 50.0%
TGCATGGCAATGGGTACCAA+AGG - chr4_1:83563405-83563424 Msa0578900:intron 50.0%
GCATGGCAATGGGTACCAAA+GGG - chr4_1:83563406-83563425 Msa0578900:intron 50.0%
AGACAGCATGGATGGAGAAG+AGG + chr4_1:83561915-83561934 None:intergenic 50.0%
TTGTTCCGCGGAAGCAGATA+AGG + chr4_1:83561995-83562014 None:intergenic 50.0%
TTACCTGAAGGGTTGTTCCG+CGG + chr4_1:83562007-83562026 None:intergenic 50.0%
GTCGATAGGTTTGACTGAGC+AGG - chr4_1:83562773-83562792 Msa0578900:CDS 50.0%
TGGCCGGCAGATAGTTGATT+TGG - chr4_1:83562896-83562915 Msa0578900:CDS 50.0%
!! CCGGCAGATAGTTGATTTGG+TGG - chr4_1:83562899-83562918 Msa0578900:CDS 50.0%
AGGCCATGACGAAAGAAGCA+TGG + chr4_1:83563032-83563051 None:intergenic 50.0%
GGCACAAGCTCTTAAAGCAG+AGG - chr4_1:83563072-83563091 Msa0578900:CDS 50.0%
CGCCTCAATCCTAGATCCAA+AGG + chr4_1:83563381-83563400 None:intergenic 50.0%
AGGATTGAGGCGTGTTTGCA+TGG - chr4_1:83563389-83563408 Msa0578900:intron 50.0%
AGGCGTGTTTGCATGGCAAT+GGG - chr4_1:83563396-83563415 Msa0578900:intron 50.0%
TGCATGGCAATGGGTACCAA+AGG - chr4_1:83563405-83563424 Msa0578900:intron 50.0%
GCATGGCAATGGGTACCAAA+GGG - chr4_1:83563406-83563425 Msa0578900:intron 50.0%
CACTGCCTTATCTGCTTCCG+CGG - chr4_1:83561987-83562006 Msa0578900:three_prime_UTR 55.0%
GCTGCTGTTATTGCCGCTAC+TGG + chr4_1:83562193-83562212 None:intergenic 55.0%
GAGGCGTGTTTGCATGGCAA+TGG - chr4_1:83563395-83563414 Msa0578900:intron 55.0%
CACTGCCTTATCTGCTTCCG+CGG - chr4_1:83561987-83562006 Msa0578900:three_prime_UTR 55.0%
GCTGCTGTTATTGCCGCTAC+TGG + chr4_1:83562193-83562212 None:intergenic 55.0%
GAGGCGTGTTTGCATGGCAA+TGG - chr4_1:83563395-83563414 Msa0578900:intron 55.0%
CTTCCGCGGAACAACCCTTC+AGG - chr4_1:83562001-83562020 Msa0578900:three_prime_UTR 60.0%
!! CGGAAGGTGCTCAACATCGG+CGG + chr4_1:83563270-83563289 None:intergenic 60.0%
CTTCCGCGGAACAACCCTTC+AGG - chr4_1:83562001-83562020 Msa0578900:three_prime_UTR 60.0%
!! CGGAAGGTGCTCAACATCGG+CGG + chr4_1:83563270-83563289 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 83561885 83563438 83561885 ID=Msa0578900;Name=Msa0578900
chr4_1 mRNA 83561885 83563438 83561885 ID=Msa0578900-mRNA-1;Parent=Msa0578900;Name=Msa0578900-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0.5|0.33|0.66|1|1|3|248|360
chr4_1 exon 83561885 83563146 83561885 ID=Msa0578900-mRNA-1:exon:30466;Parent=Msa0578900-mRNA-1
chr4_1 exon 83563301 83563361 83563301 ID=Msa0578900-mRNA-1:exon:30465;Parent=Msa0578900-mRNA-1
chr4_1 exon 83563431 83563438 83563431 ID=Msa0578900-mRNA-1:exon:30464;Parent=Msa0578900-mRNA-1
chr4_1 CDS 83563431 83563438 83563431 ID=Msa0578900-mRNA-1:cds;Parent=Msa0578900-mRNA-1
chr4_1 CDS 83563301 83563361 83563301 ID=Msa0578900-mRNA-1:cds;Parent=Msa0578900-mRNA-1
chr4_1 CDS 83562133 83563146 83562133 ID=Msa0578900-mRNA-1:cds;Parent=Msa0578900-mRNA-1
chr4_1 three_prime_UTR 83561885 83562132 83561885 ID=Msa0578900-mRNA-1:three_prime_utr;Parent=Msa0578900-mRNA-1
Gene Sequence

>Msa0578900

ATGGGTCGTGAACTCCTCTTTCCTTCGCCATTTCACTGCCTTATCTGCTTCCGCGGAACAACCCTTCAGAGTAAAATGGAAACCAGTAGCGGCAATAACAGCAGCAACATGATGTGGTTTTTCAAGGACAGAGGCTTTGATGATACCATCATACAAAAAATGTTCACAAAATGCAAGCGTCTCGAAACAGCGCATCGCGAACGAGCCAATGAAAATTGGGAGTATTTGAAAACAATTGGTATTCAAGAAAGAAAACTTCCTTCAATTGTTTCAAAATGCCCCAAAATTCTTGTACTTGGTCTCAATGAAAAGATTGTTCCAATGGTTGAATGTCTCAACACACTTGCAACTAAGCCTCATGAAGTTGCATCTGCTATAGCTAAGTTCCCTCAAATACTCTCTTGTAGTGTGGAAGAGAAGCTTTGTCCTCTTTTGGCATTTTTTCAAACATTAGGTGTGCCCGAAAAACAAATCGGGAAAATTTTATTGTTAAACCCTAGGCTTATTAGTTATAGCATTGAGACGAAGATGACGGAAATTGTGAAATTTCTTGCTAGTGTTGGTCTTGATAAAGACGGAATGATTGGAAAAATTATGATTAAGGACCCGTATATTATGGGTTATAGTGTTGATAAAAGGCTTCGTCCTACTTCGGAGTTTTTGAAGTCGATAGGTTTGACTGAGCAGGATCTTCAGGTATTAGCGTTGAACTTTCCGTCGATTTTGAGTAGAGATGTGGATAAGGTTTTGGTACACAATTATGATTTTTTAAAGAACTGTGGATTTCATGGCCGGCAGATAGTTGATTTGGTGGTTGGTTATCCTCCTATTTTGATCAAGAGTGTTCGGAATTCTTTGGAACCGAGGATCAAGTTTTTGGTAGATGTAATGGGAAGAGAAGTTGATGAAATTATTGATTATCCATGCTTCTTTCGTCATGGCCTGAAGAAAAAATTGGTGTCGCGGCACAAGCTCTTAAAGCAGAGGAATTTAAATTGCAGCTTGAGTGAAATGCTGGACTGTAATGAGAAGAAGTTCCACTTGAAGTTTGGCTTGTTAGAAGGACATACTTTGAGTAACTAG

Protein sequence

>Msa0578900

MGRELLFPSPFHCLICFRGTTLQSKMETSSGNNSSNMMWFFKDRGFDDTIIQKMFTKCKRLETAHRERANENWEYLKTIGIQERKLPSIVSKCPKILVLGLNEKIVPMVECLNTLATKPHEVASAIAKFPQILSCSVEEKLCPLLAFFQTLGVPEKQIGKILLLNPRLISYSIETKMTEIVKFLASVGLDKDGMIGKIMIKDPYIMGYSVDKRLRPTSEFLKSIGLTEQDLQVLALNFPSILSRDVDKVLVHNYDFLKNCGFHGRQIVDLVVGYPPILIKSVRNSLEPRIKFLVDVMGREVDEIIDYPCFFRHGLKKKLVSRHKLLKQRNLNCSLSEMLDCNEKKFHLKFGLLEGHTLSN*