AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0092680


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0092680 MtrunA17_Chr1g0209801 95.331 257 12 0 1 257 1 257 5.96e-179 492
Msa0092680 MtrunA17_Chr1g0193661 32.639 144 88 5 78 218 74 211 8.38e-12 63.9
Msa0092680 MtrunA17_Chr4g0066351 32.639 144 88 5 78 218 74 211 9.77e-12 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0092680 AT3G25920.1 70.464 237 58 2 17 243 24 258 2.52e-111 322

Find 81 sgRNAs with CRISPR-Local

Find 426 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACAAATTGGTTTCTTCTTT+AGG 0.207614 1_2:+75374834 Msa0092680:three_prime_UTR
TCGGTTTCGGTTGGACAATT+TGG 0.209684 1_2:+75369938 Msa0092680:CDS
CAAGGAGCGAGTTGTGGTTT+TGG 0.247810 1_2:+75370020 Msa0092680:CDS
ATCAATCATCATCAACAAAT+TGG 0.250968 1_2:+75374821 Msa0092680:three_prime_UTR
TCCTGCAATTCCTCTAAGTT+TGG 0.258498 1_2:-75370126 None:intergenic
CGCTCTTCACTCTGTCAAAA+TGG 0.262848 1_2:-75369629 None:intergenic
CTTCTCTTATTCCTGTTTCC+TGG 0.269459 1_2:+75369689 Msa0092680:CDS
CGGTTTCGGTTGGACAATTT+GGG 0.284648 1_2:+75369939 Msa0092680:CDS
AGCAGCTGCTTCTCGCTTCT+TGG 0.291577 1_2:-75374751 None:intergenic
TTGCATATTTAAACAGAATC+TGG 0.313222 1_2:-75374780 None:intergenic
CGACGATTGCCCAAACTTAG+AGG 0.316218 1_2:+75370116 Msa0092680:CDS
AGATTGATGTGGACATATTT+CGG 0.336463 1_2:-75371154 None:intergenic
GGACAATTTGGGTCCACAAC+CGG 0.350730 1_2:+75369950 Msa0092680:CDS
CTCTCTCGCTTCTCCATTCA+AGG 0.354654 1_2:+75369717 Msa0092680:CDS
CATCATTGAACAGTGAAATA+AGG 0.365832 1_2:-75375174 None:intergenic
TTAAGACATGGACATAGATA+TGG 0.367880 1_2:-75369837 None:intergenic
GAGAAAACTTCAATACAAAA+AGG 0.369347 1_2:-75374897 None:intergenic
TGTTCCATCACTGTGATTCC+TGG 0.369456 1_2:+75374666 Msa0092680:CDS
CCCAAACTTAGAGGAATTGC+AGG 0.376415 1_2:+75370125 Msa0092680:CDS
TGATTCCTGGCCGTAAGAAA+TGG 0.380224 1_2:+75374679 Msa0092680:CDS
CTCTTTCTTGAACCCGGTTG+TGG 0.388527 1_2:-75369963 None:intergenic
AGGTGCATACCGAAAGTTCT+TGG 0.394725 1_2:+75375144 Msa0092680:three_prime_UTR
CCTGCAATTCCTCTAAGTTT+GGG 0.397805 1_2:-75370125 None:intergenic
CTCCTTCGCTGATGTGGAAA+AGG 0.406202 1_2:-75374625 None:intergenic
GGAAATAGAAATACCTTGAA+TGG 0.411477 1_2:-75369730 None:intergenic
CTCTGTCAAAATGGAACAAA+CGG 0.412322 1_2:-75369620 None:intergenic
TAATAAGGCTGCTTCTGCTT+CGG 0.436199 1_2:+75369893 Msa0092680:CDS
GGCACCGAACCAAGAACTTT+CGG 0.440027 1_2:-75375153 None:intergenic
AAGAAAGAGAGCAAAGAGAA+AGG 0.443452 1_2:+75369977 Msa0092680:CDS
AGAGAGGGTAACCAGGAAAC+AGG 0.445145 1_2:-75369700 None:intergenic
ATGGCTTAACCCATTTCTTA+CGG 0.452810 1_2:-75374689 None:intergenic
AACCAGCAGGTGAAAATGTT+CGG 0.456863 1_2:+75369919 Msa0092680:CDS
CGATTTGTGCTGGAAACCTT+TGG 0.460118 1_2:+75375028 Msa0092680:three_prime_UTR
AGAAGGGGAAGAGGTGTCTC+TGG 0.461261 1_2:+75371204 Msa0092680:CDS
CAGGTGAAAATGTTCGGTTT+CGG 0.473561 1_2:+75369925 Msa0092680:CDS
GTTTGCTTGTCGATTTGTGC+TGG 0.476311 1_2:+75375018 Msa0092680:three_prime_UTR
AGAAAGAGAGCAAAGAGAAA+GGG 0.484644 1_2:+75369978 Msa0092680:CDS
GACAATTTGGGTCCACAACC+GGG 0.485695 1_2:+75369951 Msa0092680:CDS
TGAAAATGTTCGGTTTCGGT+TGG 0.487169 1_2:+75369929 Msa0092680:CDS
AGAAGCGAGAGAGGGTAACC+AGG 0.489358 1_2:-75369707 None:intergenic
AAGTTTCTCCTTCGCTGATG+TGG 0.489671 1_2:-75374631 None:intergenic
TTAACCCATTTCTTACGGCC+AGG 0.492636 1_2:-75374684 None:intergenic
GAAATATGTCCACATCAATC+TGG 0.495258 1_2:+75371156 Msa0092680:CDS
TTTGCTCTCTTTCTTGAACC+CGG 0.495268 1_2:-75369969 None:intergenic
GGAACGGAAACTTCTATTGA+AGG 0.496485 1_2:+75371267 Msa0092680:CDS
AGTTTCCGTTCCCTTCCTGA+TGG 0.497026 1_2:-75371256 None:intergenic
ACATAATAAGGTATGCATGC+TGG 0.501018 1_2:+75371127 Msa0092680:intron
TCTGCTTCGGTGAAACCAGC+AGG 0.507750 1_2:+75369906 Msa0092680:CDS
AGAGCAAAGAGAAAGGGAAG+AGG 0.509714 1_2:+75369984 Msa0092680:CDS
GATTCCTGGCCGTAAGAAAT+GGG 0.511756 1_2:+75374680 Msa0092680:CDS
CATACCGAAAGTTCTTGGTT+CGG 0.517088 1_2:+75375149 Msa0092680:three_prime_UTR
GTTATGTAGTTTCTTGTACA+AGG 0.522578 1_2:+75375124 Msa0092680:three_prime_UTR
GAAGATGCTGGATTTCAAGA+AGG 0.525528 1_2:+75371187 Msa0092680:CDS
AAGGAGAAACTTGAGTCTGC+TGG 0.526406 1_2:+75374642 Msa0092680:CDS
CTGGTAGACATAGAAGATGC+TGG 0.527862 1_2:+75371175 Msa0092680:CDS
AAACGTGTGATTAACCCATC+AGG 0.531753 1_2:+75371241 Msa0092680:CDS
AAGATGCTGGATTTCAAGAA+GGG 0.537870 1_2:+75371188 Msa0092680:CDS
GTTTCCGTTCCCTTCCTGAT+GGG 0.539207 1_2:-75371255 None:intergenic
AGAGGTATTGCCGCAGGACA+AGG 0.557884 1_2:+75370002 Msa0092680:CDS
TTGGGCAATCGTCGATAAAG+TGG 0.564517 1_2:-75370107 None:intergenic
AAGAAGTTGACAATAAAAGC+TGG 0.573815 1_2:+75374600 Msa0092680:CDS
GCAGGACAAGGAGCGAGTTG+TGG 0.577933 1_2:+75370014 Msa0092680:CDS
TGGATTTCAAGAAGGGGAAG+AGG 0.578835 1_2:+75371195 Msa0092680:CDS
GTAGGGAAATGTGAAAACCT+TGG 0.584114 1_2:+75369806 Msa0092680:intron
AAGGGAAGAGGTATTGCCGC+AGG 0.588347 1_2:+75369996 Msa0092680:CDS
TTGTGCTGGAAACCTTTGGT+AGG 0.590784 1_2:+75375032 Msa0092680:three_prime_UTR
CTTGAATGGAGAAGCGAGAG+AGG 0.590843 1_2:-75369716 None:intergenic
GGTGTCTCTGGAGACACTGA+CGG 0.598433 1_2:+75371216 Msa0092680:CDS
ATTAAACACACTCCTACCAA+AGG 0.609468 1_2:-75375044 None:intergenic
GTGTGATTAACCCATCAGGA+AGG 0.611754 1_2:+75371245 Msa0092680:CDS
TTGAATGGAGAAGCGAGAGA+GGG 0.622388 1_2:-75369715 None:intergenic
CTTCTTGGCGAAGTATTCGT+CGG 0.627986 1_2:-75374736 None:intergenic
ACGGCCAGGAATCACAGTGA+TGG 0.630385 1_2:-75374670 None:intergenic
TGTGATTAACCCATCAGGAA+GGG 0.634878 1_2:+75371246 Msa0092680:CDS
TCTGGACCTGGTATCATGAG+AGG 0.634957 1_2:+75370065 Msa0092680:CDS
TCAAAACCTCTCATGATACC+AGG 0.646172 1_2:-75370071 None:intergenic
CTATGTCTACCAGATTGATG+TGG 0.650882 1_2:-75371165 None:intergenic
TTAACCCATCAGGAAGGGAA+CGG 0.658603 1_2:+75371251 Msa0092680:CDS
AGATGCTGGATTTCAAGAAG+GGG 0.662527 1_2:+75371189 Msa0092680:CDS
ACAACTCGCTCCTTGTCCTG+CGG 0.686055 1_2:-75370012 None:intergenic
AAACTTAGAGGAATTGCAGG+AGG 0.696930 1_2:+75370128 Msa0092680:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTAATTAAATGTACATTTA+GGG - chr1_2:75372019-75372038 None:intergenic 10.0%
!!! TTTTAATTAAATGTACATTT+AGG - chr1_2:75372020-75372039 None:intergenic 10.0%
!!! TACACAATATATTTTTAAAA+AGG + chr1_2:75374515-75374534 Msa0092680:intron 10.0%
!! AATTTCAACAATAAAACAAT+AGG - chr1_2:75370185-75370204 None:intergenic 15.0%
!! GAATTATATTAGGATAATTT+AGG + chr1_2:75370570-75370589 Msa0092680:intron 15.0%
!!! AAAAGCAATTATTTTATGAA+AGG + chr1_2:75370995-75371014 Msa0092680:intron 15.0%
!!! GATTATTTTAGATTAACTAT+AGG - chr1_2:75371812-75371831 None:intergenic 15.0%
!!! TATTAATCTTTTTCACTTTA+AGG + chr1_2:75373419-75373438 Msa0092680:intron 15.0%
!!! TCTAATATCATTTAGAATTT+TGG + chr1_2:75373884-75373903 Msa0092680:intron 15.0%
!!! TTCTTTTCAAGATATTTTAA+TGG - chr1_2:75374979-75374998 None:intergenic 15.0%
!!! GTGTGTTTAATTTTATAATA+AGG + chr1_2:75375056-75375075 Msa0092680:three_prime_UTR 15.0%
!! TATGAGAAAATGAAATGAAA+TGG - chr1_2:75369754-75369773 None:intergenic 20.0%
!!! ACCATTGATTTTATATTTGT+AGG + chr1_2:75369788-75369807 Msa0092680:intron 20.0%
!!! CCATTGATTTTATATTTGTA+GGG + chr1_2:75369789-75369808 Msa0092680:intron 20.0%
!!! GAAAATAATGTTTTCAACTA+TGG + chr1_2:75370222-75370241 Msa0092680:intron 20.0%
!! AACAAAACATCGTAAAAAAA+GGG - chr1_2:75370498-75370517 None:intergenic 20.0%
!! TAACAAAACATCGTAAAAAA+AGG - chr1_2:75370499-75370518 None:intergenic 20.0%
!!! GGATTTTGTTGAATTATATT+AGG + chr1_2:75370560-75370579 Msa0092680:intron 20.0%
!!! CTTTGAAAATCTACATATTA+GGG - chr1_2:75370784-75370803 None:intergenic 20.0%
!!! TCTTTGAAAATCTACATATT+AGG - chr1_2:75370785-75370804 None:intergenic 20.0%
!!! TTCACTTTTAAAAACAAATG+AGG + chr1_2:75371397-75371416 Msa0092680:intron 20.0%
!! TTTCATATTATGCCTTTAAT+CGG + chr1_2:75371511-75371530 Msa0092680:intron 20.0%
!! AAAGAGTTAAAGTTAGTTAA+TGG + chr1_2:75371669-75371688 Msa0092680:intron 20.0%
!!! TATTTTCAACAAGAGAAATA+AGG + chr1_2:75371848-75371867 Msa0092680:intron 20.0%
!! AAATATCAATTTCTGTCTAT+TGG + chr1_2:75372037-75372056 Msa0092680:intron 20.0%
!! TACCAGATAGAATATTTAAA+AGG + chr1_2:75372457-75372476 Msa0092680:intron 20.0%
!! ACCAGATAGAATATTTAAAA+GGG + chr1_2:75372458-75372477 Msa0092680:intron 20.0%
!! GAGAATTCAAGAATATAAAA+TGG + chr1_2:75372605-75372624 Msa0092680:intron 20.0%
!!! ATTTCTAAAGTGATATTTAG+CGG + chr1_2:75374156-75374175 Msa0092680:intron 20.0%
!!! TTATCAAAAAAGGTGTAATT+TGG + chr1_2:75375094-75375113 Msa0092680:three_prime_UTR 20.0%
! CCCTACAAATATAAAATCAA+TGG - chr1_2:75369792-75369811 None:intergenic 25.0%
! TTATTAACAACAAAAACACG+AGG - chr1_2:75369879-75369898 None:intergenic 25.0%
!!! TCGTGTTTTTGTTGTTAATA+AGG + chr1_2:75369878-75369897 Msa0092680:CDS 25.0%
!! AATAATGTTTTCAACTATGG+TGG + chr1_2:75370225-75370244 Msa0092680:intron 25.0%
! TTGACATTGTAATTCAATGA+TGG + chr1_2:75370258-75370277 Msa0092680:intron 25.0%
! TTAGTCTATATACTACCAAA+TGG + chr1_2:75370360-75370379 Msa0092680:intron 25.0%
! TAGTCTATATACTACCAAAT+GGG + chr1_2:75370361-75370380 Msa0092680:intron 25.0%
! TCATTAGTAGGAAAAAACAA+TGG + chr1_2:75370637-75370656 Msa0092680:intron 25.0%
! CATTTCAAGATGTCAATAAA+GGG - chr1_2:75370822-75370841 None:intergenic 25.0%
!!! TTTTGAAATGAAATCATGGA+AGG - chr1_2:75370979-75370998 None:intergenic 25.0%
!!! TTGCTTTTGAAATGAAATCA+TGG - chr1_2:75370983-75371002 None:intergenic 25.0%
!!! CTTTTAAAAACAAATGAGGA+TGG + chr1_2:75371401-75371420 Msa0092680:intron 25.0%
! AGAAGTCTTTCTTGATATAT+GGG - chr1_2:75371443-75371462 None:intergenic 25.0%
!! TAAGTTCAAACGCAATATTT+TGG + chr1_2:75371583-75371602 Msa0092680:intron 25.0%
!! GAATTTGAAACTGTAAAAGT+TGG + chr1_2:75371624-75371643 Msa0092680:intron 25.0%
! TGTAAAAGTTGGAATATAAG+AGG + chr1_2:75371635-75371654 Msa0092680:intron 25.0%
!! TAAAGTTAGTTAATGGATGT+TGG + chr1_2:75371676-75371695 Msa0092680:intron 25.0%
!! AAAGTTAGTTAATGGATGTT+GGG + chr1_2:75371677-75371696 Msa0092680:intron 25.0%
! CTCTTGTTGAAAATATGTTT+AGG - chr1_2:75371843-75371862 None:intergenic 25.0%
! TGTTGTCTATAAATAAGAAG+AGG + chr1_2:75371873-75371892 Msa0092680:intron 25.0%
! GTTGTCTATAAATAAGAAGA+GGG + chr1_2:75371874-75371893 Msa0092680:intron 25.0%
!!! TCTTGTCATTTTAGTATAGT+CGG + chr1_2:75371920-75371939 Msa0092680:intron 25.0%
! GTATATCATTGAAGATTATG+TGG + chr1_2:75372087-75372106 Msa0092680:intron 25.0%
!!! GAGGTATTTTCATATGAAAT+AGG + chr1_2:75372205-75372224 Msa0092680:intron 25.0%
!! TTTTCATATGAAATAGGTGT+TGG + chr1_2:75372211-75372230 Msa0092680:intron 25.0%
! TTTCATATGAAATAGGTGTT+GGG + chr1_2:75372212-75372231 Msa0092680:intron 25.0%
! TGATGTGTCATAATGTTATT+AGG + chr1_2:75372317-75372336 Msa0092680:intron 25.0%
!! ACCCTTTTAAATATTCTATC+TGG - chr1_2:75372462-75372481 None:intergenic 25.0%
!! TTAAAAGGGTTTTTCTTGAA+AGG + chr1_2:75372472-75372491 Msa0092680:intron 25.0%
! AATAAAAAAGATTACCGAAC+AGG + chr1_2:75372710-75372729 Msa0092680:intron 25.0%
! ATAAAAAAGATTACCGAACA+GGG + chr1_2:75372711-75372730 Msa0092680:intron 25.0%
! AAAAGGAAAAGATGTCTTTA+TGG + chr1_2:75372785-75372804 Msa0092680:intron 25.0%
! AAAGGAAAAGATGTCTTTAT+GGG + chr1_2:75372786-75372805 Msa0092680:intron 25.0%
! TGTCAGATTCTAAACATATT+TGG - chr1_2:75373017-75373036 None:intergenic 25.0%
!!! TCTTTTTCACTTTAAGGATA+AGG + chr1_2:75373425-75373444 Msa0092680:intron 25.0%
!!! TCTTGTATTTTTAATAGAGC+TGG + chr1_2:75373583-75373602 Msa0092680:intron 25.0%
!!! CTTGTATTTTTAATAGAGCT+GGG + chr1_2:75373584-75373603 Msa0092680:intron 25.0%
!!! AATTCTATTTCTAAGTTGGT+TGG - chr1_2:75373638-75373657 None:intergenic 25.0%
!! TTCGTAGATATGAAAAGTAT+TGG - chr1_2:75374124-75374143 None:intergenic 25.0%
!! AATATTTTCCTGAGTTTATG+AGG - chr1_2:75374361-75374380 None:intergenic 25.0%
! CAATTTCAAACAACTTATAC+AGG + chr1_2:75374398-75374417 Msa0092680:intron 25.0%
! TTGCATATTTAAACAGAATC+TGG - chr1_2:75374783-75374802 None:intergenic 25.0%
! ATCAATCATCATCAACAAAT+TGG + chr1_2:75374821-75374840 Msa0092680:three_prime_UTR 25.0%
!! AACAAATTGGTTTCTTCTTT+AGG + chr1_2:75374834-75374853 Msa0092680:three_prime_UTR 25.0%
! GAGAAAACTTCAATACAAAA+AGG - chr1_2:75374900-75374919 None:intergenic 25.0%
!! TTTTGTATTGAAGTTTTCTC+TGG + chr1_2:75374900-75374919 Msa0092680:three_prime_UTR 25.0%
GGAAATAGAAATACCTTGAA+TGG - chr1_2:75369733-75369752 None:intergenic 30.0%
TTAAGACATGGACATAGATA+TGG - chr1_2:75369840-75369859 None:intergenic 30.0%
!!! ATTCGCTGAATTTTAAGACA+TGG - chr1_2:75369852-75369871 None:intergenic 30.0%
! AATATAATTTGCCCGCTAAT+AGG + chr1_2:75370469-75370488 Msa0092680:intron 30.0%
! TAATTTAGGATCCTACTGTT+AGG + chr1_2:75370584-75370603 Msa0092680:intron 30.0%
! AATTTAGGATCCTACTGTTA+GGG + chr1_2:75370585-75370604 Msa0092680:intron 30.0%
ATGACTTTCAAATGTGATGT+AGG - chr1_2:75370718-75370737 None:intergenic 30.0%
GATATATACAACAGCATATC+CGG - chr1_2:75370762-75370781 None:intergenic 30.0%
CCATTTCAAGATGTCAATAA+AGG - chr1_2:75370823-75370842 None:intergenic 30.0%
CCTTTATTGACATCTTGAAA+TGG + chr1_2:75370820-75370839 Msa0092680:intron 30.0%
TTATTGTCTGAAGAGAATCA+TGG + chr1_2:75370846-75370865 Msa0092680:intron 30.0%
!! AAATTTAGGTATTGGAAGCT+TGG - chr1_2:75370886-75370905 None:intergenic 30.0%
AGGAAGAGAAATTTAGGTAT+TGG - chr1_2:75370894-75370913 None:intergenic 30.0%
AATGAAATCATGGAAGGATA+TGG - chr1_2:75370973-75370992 None:intergenic 30.0%
TTTCTTTCATTCTTTGTCGT+AGG + chr1_2:75371020-75371039 Msa0092680:intron 30.0%
AGATTGATGTGGACATATTT+CGG - chr1_2:75371157-75371176 None:intergenic 30.0%
!! ACACATTACTTGTTGGTTTA+TGG + chr1_2:75371291-75371310 Msa0092680:intron 30.0%
ACATGTAAGACAACAACTAA+GGG - chr1_2:75371332-75371351 None:intergenic 30.0%
AACATGTAAGACAACAACTA+AGG - chr1_2:75371333-75371352 None:intergenic 30.0%
! ATTGTTTTCATGATGTCTAG+AGG + chr1_2:75371363-75371382 Msa0092680:intron 30.0%
GAAGTCTTTCTTGATATATG+GGG - chr1_2:75371442-75371461 None:intergenic 30.0%
CAGAAGTCTTTCTTGATATA+TGG - chr1_2:75371444-75371463 None:intergenic 30.0%
ACTTTATTCACGATAGACAA+GGG - chr1_2:75371476-75371495 None:intergenic 30.0%
AACTTTATTCACGATAGACA+AGG - chr1_2:75371477-75371496 None:intergenic 30.0%
AACCAAAATTCTCCGATTAA+AGG - chr1_2:75371526-75371545 None:intergenic 30.0%
ACTTTAACTCTTTCAACCAA+CGG - chr1_2:75371662-75371681 None:intergenic 30.0%
TTTCTTTGAGCCTTACAAAA+CGG - chr1_2:75371748-75371767 None:intergenic 30.0%
TATAAATAAGAAGAGGGCTT+AGG + chr1_2:75371880-75371899 Msa0092680:intron 30.0%
!!! CTTGTCATTTTAGTATAGTC+GGG + chr1_2:75371921-75371940 Msa0092680:intron 30.0%
!!! TTGTCATTTTAGTATAGTCG+GGG + chr1_2:75371922-75371941 Msa0092680:intron 30.0%
TTAGGGAAAATTTCCTTGTA+TGG - chr1_2:75372002-75372021 None:intergenic 30.0%
ATTTCTGTCTATTGGTATCA+AGG + chr1_2:75372045-75372064 Msa0092680:intron 30.0%
! AATAAGAATAAAGGCACACA+TGG + chr1_2:75372114-75372133 Msa0092680:intron 30.0%
! TAACCCATTTGGTATTTTGT+TGG + chr1_2:75372363-75372382 Msa0092680:intron 30.0%
! AACCCATTTGGTATTTTGTT+GGG + chr1_2:75372364-75372383 Msa0092680:intron 30.0%
TACCCAACAAAATACCAAAT+GGG - chr1_2:75372369-75372388 None:intergenic 30.0%
ATACCCAACAAAATACCAAA+TGG - chr1_2:75372370-75372389 None:intergenic 30.0%
AAATGAGTGAAGAAAAGAGT+CGG + chr1_2:75372560-75372579 Msa0092680:intron 30.0%
AAATGGAGAAGTAAGAAGAA+AGG + chr1_2:75372622-75372641 Msa0092680:intron 30.0%
AAGAAGAAAGGTGAAAGAAA+TGG + chr1_2:75372634-75372653 Msa0092680:intron 30.0%
TAAAAAAGATTACCGAACAG+GGG + chr1_2:75372712-75372731 Msa0092680:intron 30.0%
CAGAGTTTCACAATTTGTAA+TGG - chr1_2:75372909-75372928 None:intergenic 30.0%
TGTTGGATTGTATTTCAAAG+AGG + chr1_2:75373131-75373150 Msa0092680:intron 30.0%
AAGACTTCCTTTATAAGAAG+AGG + chr1_2:75373199-75373218 Msa0092680:intron 30.0%
GTATCTACCTCTTCTTATAA+AGG - chr1_2:75373209-75373228 None:intergenic 30.0%
TGCTCTACATGAATAATACT+TGG - chr1_2:75373241-75373260 None:intergenic 30.0%
AACTACTACATCAAGCTAAA+AGG + chr1_2:75373338-75373357 Msa0092680:intron 30.0%
ACTACTACATCAAGCTAAAA+GGG + chr1_2:75373339-75373358 Msa0092680:intron 30.0%
TGCTGTCTATATATAAGAAG+AGG + chr1_2:75373546-75373565 Msa0092680:intron 30.0%
TATATATAAGAAGAGGCTGA+AGG + chr1_2:75373553-75373572 Msa0092680:intron 30.0%
!! GAGCAATTCTATTTCTAAGT+TGG - chr1_2:75373642-75373661 None:intergenic 30.0%
CAAACATGCATAAACTTCTA+GGG + chr1_2:75373787-75373806 Msa0092680:intron 30.0%
! TCTAGCATCATGAATTTTGT+TGG + chr1_2:75374222-75374241 Msa0092680:intron 30.0%
AGAAGAGCTCTTTCAAATAA+TGG - chr1_2:75374333-75374352 None:intergenic 30.0%
ATTATTTGAAAGAGCTCTTC+TGG + chr1_2:75374332-75374351 Msa0092680:intron 30.0%
ACTTCAAATTAGTCATGCAT+TGG + chr1_2:75374442-75374461 Msa0092680:intron 30.0%
CTTCAAATTAGTCATGCATT+GGG + chr1_2:75374443-75374462 Msa0092680:intron 30.0%
!! AATAATAGTTTGTTGTGCTC+TGG + chr1_2:75374547-75374566 Msa0092680:intron 30.0%
AAGAAGTTGACAATAAAAGC+TGG + chr1_2:75374600-75374619 Msa0092680:CDS 30.0%
!!! CCTTTTTTGATAAAGACACA+AGG - chr1_2:75375087-75375106 None:intergenic 30.0%
CCTTGTGTCTTTATCAAAAA+AGG + chr1_2:75375084-75375103 Msa0092680:three_prime_UTR 30.0%
GTTATGTAGTTTCTTGTACA+AGG + chr1_2:75375124-75375143 Msa0092680:three_prime_UTR 30.0%
CATCATTGAACAGTGAAATA+AGG - chr1_2:75375177-75375196 None:intergenic 30.0%
CTCTGTCAAAATGGAACAAA+CGG - chr1_2:75369623-75369642 None:intergenic 35.0%
!! TAGATATGGTTTTGCTACCA+AGG - chr1_2:75369826-75369845 None:intergenic 35.0%
AAGAAAGAGAGCAAAGAGAA+AGG + chr1_2:75369977-75369996 Msa0092680:CDS 35.0%
AGAAAGAGAGCAAAGAGAAA+GGG + chr1_2:75369978-75369997 Msa0092680:CDS 35.0%
ATCTCTTCTTACACAACACT+TGG + chr1_2:75370152-75370171 Msa0092680:intron 35.0%
TCTCTTCTTACACAACACTT+GGG + chr1_2:75370153-75370172 Msa0092680:intron 35.0%
AAAAAAGGGCAACCTATTAG+CGG - chr1_2:75370484-75370503 None:intergenic 35.0%
TAGCATCATAATGCTTCACA+TGG + chr1_2:75370528-75370547 Msa0092680:intron 35.0%
TGCTTCACATGGAGTTTAAA+TGG + chr1_2:75370539-75370558 Msa0092680:intron 35.0%
CTACATGTAGCATCATTAGT+AGG + chr1_2:75370625-75370644 Msa0092680:intron 35.0%
TAGATGAGAATTGTGATTCC+TGG + chr1_2:75370661-75370680 Msa0092680:intron 35.0%
TACATAATCAATCTGCAACC+AGG - chr1_2:75370682-75370701 None:intergenic 35.0%
TCATGAAGTATGCCTATTAC+AGG + chr1_2:75370734-75370753 Msa0092680:intron 35.0%
TGAAGAGAATCATGGCATTA+TGG + chr1_2:75370854-75370873 Msa0092680:intron 35.0%
GAACTGAGGAAGAGAAATTT+AGG - chr1_2:75370900-75370919 None:intergenic 35.0%
GTCAAGCATAATAAGAACTG+AGG - chr1_2:75370914-75370933 None:intergenic 35.0%
GAAGGATATGGAAGAATAAG+GGG - chr1_2:75370961-75370980 None:intergenic 35.0%
GGAAGGATATGGAAGAATAA+GGG - chr1_2:75370962-75370981 None:intergenic 35.0%
TGGAAGGATATGGAAGAATA+AGG - chr1_2:75370963-75370982 None:intergenic 35.0%
GTATATGCATAAATCTCGCT+TGG + chr1_2:75371062-75371081 Msa0092680:intron 35.0%
ACATAATAAGGTATGCATGC+TGG + chr1_2:75371127-75371146 Msa0092680:intron 35.0%
GAAATATGTCCACATCAATC+TGG + chr1_2:75371156-75371175 Msa0092680:CDS 35.0%
AAGATGCTGGATTTCAAGAA+GGG + chr1_2:75371188-75371207 Msa0092680:CDS 35.0%
! TGAAGGTACACATTACTTGT+TGG + chr1_2:75371284-75371303 Msa0092680:intron 35.0%
! TTCTTGATATATGGGGTACT+AGG - chr1_2:75371435-75371454 None:intergenic 35.0%
CAAGAAAGACTTCTGATATG+AGG + chr1_2:75371449-75371468 Msa0092680:intron 35.0%
! TGCCTTTAATCGGAGAATTT+TGG + chr1_2:75371521-75371540 Msa0092680:intron 35.0%
!! GTTCAAACGCAATATTTTGG+TGG + chr1_2:75371586-75371605 Msa0092680:intron 35.0%
! ATAATCGAGTCCGTTTTGTA+AGG + chr1_2:75371735-75371754 Msa0092680:intron 35.0%
!!! TGTCATTTTAGTATAGTCGG+GGG + chr1_2:75371923-75371942 Msa0092680:intron 35.0%
GGAAAACTACAGAACTTCAA+AGG - chr1_2:75371981-75372000 None:intergenic 35.0%
! GTTCTGTAGTTTTCCATACA+AGG + chr1_2:75371986-75372005 Msa0092680:intron 35.0%
TGTGGCGTGAATAAGAATAA+AGG + chr1_2:75372105-75372124 Msa0092680:intron 35.0%
GTGAGGAAGTAATTTCAGTT+GGG + chr1_2:75372149-75372168 Msa0092680:intron 35.0%
TGAGGAAGTAATTTCAGTTG+GGG + chr1_2:75372150-75372169 Msa0092680:intron 35.0%
CAAGGATCAATTTGACATAC+AGG + chr1_2:75372416-75372435 Msa0092680:intron 35.0%
ATCAATTTGACATACAGGTC+AGG + chr1_2:75372421-75372440 Msa0092680:intron 35.0%
! AAGGGTTTTTCTTGAAAGGA+CGG + chr1_2:75372476-75372495 Msa0092680:intron 35.0%
ACTATTGGAGGAGATGAATT+TGG + chr1_2:75372527-75372546 Msa0092680:intron 35.0%
GAAATGGAGTGAAATGACTA+TGG + chr1_2:75372650-75372669 Msa0092680:intron 35.0%
! CTTTTCATTCCACTTCTGTT+AGG - chr1_2:75372770-75372789 None:intergenic 35.0%
CTAACAGAAGTGGAATGAAA+AGG + chr1_2:75372768-75372787 Msa0092680:intron 35.0%
TGTCACATCATTGTTGAATG+CGG + chr1_2:75372844-75372863 Msa0092680:intron 35.0%
!! TTTGTACAAGAGCACACTTT+TGG - chr1_2:75372876-75372895 None:intergenic 35.0%
! AAAAGTGTGCTCTTGTACAA+AGG + chr1_2:75372875-75372894 Msa0092680:intron 35.0%
AATCTGACAACTTCAACCTT+TGG + chr1_2:75373028-75373047 Msa0092680:intron 35.0%
ATCTGACAACTTCAACCTTT+GGG + chr1_2:75373029-75373048 Msa0092680:intron 35.0%
ATTGATGAGAGGCAGATTAA+TGG + chr1_2:75373174-75373193 Msa0092680:intron 35.0%
TTGATACACCTGTTAGTTGA+AGG + chr1_2:75373468-75373487 Msa0092680:intron 35.0%
TGAGTTAAGCTTGTAGTTTG+TGG + chr1_2:75373495-75373514 Msa0092680:intron 35.0%
! GAGTTAAGCTTGTAGTTTGT+GGG + chr1_2:75373496-75373515 Msa0092680:intron 35.0%
!! TTTCTAAGTTGGTTGGAAGA+GGG - chr1_2:75373631-75373650 None:intergenic 35.0%
!! ATTTCTAAGTTGGTTGGAAG+AGG - chr1_2:75373632-75373651 None:intergenic 35.0%
! TTTTCCTTCACAAGGCTTAT+AGG - chr1_2:75373720-75373739 None:intergenic 35.0%
!!! GCATGTTATTTTCCTTCACA+AGG - chr1_2:75373728-75373747 None:intergenic 35.0%
GTGAAGGAAAATAACATGCT+CGG + chr1_2:75373729-75373748 Msa0092680:intron 35.0%
GCAAACATGCATAAACTTCT+AGG + chr1_2:75373786-75373805 Msa0092680:intron 35.0%
GCATTCTTTACCTTACAAAC+TGG - chr1_2:75373929-75373948 None:intergenic 35.0%
AAAGAAACTGTAGCATGTTC+TGG + chr1_2:75374182-75374201 Msa0092680:intron 35.0%
ACATATAATACGCTACCAAG+TGG + chr1_2:75374274-75374293 Msa0092680:intron 35.0%
CATATAATACGCTACCAAGT+GGG + chr1_2:75374275-75374294 Msa0092680:intron 35.0%
ATGGCTTAACCCATTTCTTA+CGG - chr1_2:75374692-75374711 None:intergenic 35.0%
ATTAAACACACTCCTACCAA+AGG - chr1_2:75375047-75375066 None:intergenic 35.0%
!! CATTTTGACAGAGTGAAGAG+CGG + chr1_2:75369630-75369649 Msa0092680:five_prime_UTR 40.0%
CTTCTCTTATTCCTGTTTCC+TGG + chr1_2:75369689-75369708 Msa0092680:CDS 40.0%
GTAGGGAAATGTGAAAACCT+TGG + chr1_2:75369806-75369825 Msa0092680:intron 40.0%
TAATAAGGCTGCTTCTGCTT+CGG + chr1_2:75369893-75369912 Msa0092680:CDS 40.0%
AACCAGCAGGTGAAAATGTT+CGG + chr1_2:75369919-75369938 Msa0092680:CDS 40.0%
CAGGTGAAAATGTTCGGTTT+CGG + chr1_2:75369925-75369944 Msa0092680:CDS 40.0%
TGAAAATGTTCGGTTTCGGT+TGG + chr1_2:75369929-75369948 Msa0092680:CDS 40.0%
TTTGCTCTCTTTCTTGAACC+CGG - chr1_2:75369972-75369991 None:intergenic 40.0%
!!! AGTTGTGGTTTTGGAATGAG+AGG + chr1_2:75370029-75370048 Msa0092680:CDS 40.0%
AGAGGTCAAAAATCTCGATC+TGG + chr1_2:75370047-75370066 Msa0092680:CDS 40.0%
TCAAAACCTCTCATGATACC+AGG - chr1_2:75370074-75370093 None:intergenic 40.0%
!! GGTATCATGAGAGGTTTTGA+AGG + chr1_2:75370074-75370093 Msa0092680:CDS 40.0%
!!! ATCATGAGAGGTTTTGAAGG+TGG + chr1_2:75370077-75370096 Msa0092680:CDS 40.0%
CCTGCAATTCCTCTAAGTTT+GGG - chr1_2:75370128-75370147 None:intergenic 40.0%
TCCTGCAATTCCTCTAAGTT+TGG - chr1_2:75370129-75370148 None:intergenic 40.0%
AAACTTAGAGGAATTGCAGG+AGG + chr1_2:75370128-75370147 Msa0092680:CDS 40.0%
AAAAAGGGCAACCTATTAGC+GGG - chr1_2:75370483-75370502 None:intergenic 40.0%
CTATGTCTACCAGATTGATG+TGG - chr1_2:75371168-75371187 None:intergenic 40.0%
GAAGATGCTGGATTTCAAGA+AGG + chr1_2:75371187-75371206 Msa0092680:CDS 40.0%
AGATGCTGGATTTCAAGAAG+GGG + chr1_2:75371189-75371208 Msa0092680:CDS 40.0%
AAACGTGTGATTAACCCATC+AGG + chr1_2:75371241-75371260 Msa0092680:CDS 40.0%
TGTGATTAACCCATCAGGAA+GGG + chr1_2:75371246-75371265 Msa0092680:CDS 40.0%
GGAACGGAAACTTCTATTGA+AGG + chr1_2:75371267-75371286 Msa0092680:CDS 40.0%
TTGGAATATAAGAGGTCCGT+TGG + chr1_2:75371643-75371662 Msa0092680:intron 40.0%
GATTATGCGGTTGAGAAACA+CGG - chr1_2:75371721-75371740 None:intergenic 40.0%
! ACAAAACGGACTCGATTATG+CGG - chr1_2:75371734-75371753 None:intergenic 40.0%
ATATACTCCCAACTCCTTGA+TGG - chr1_2:75372073-75372092 None:intergenic 40.0%
GGTGAGGAAGTAATTTCAGT+TGG + chr1_2:75372148-75372167 Msa0092680:intron 40.0%
GTTGGATCAACAAGTTTGAG+AGG + chr1_2:75372186-75372205 Msa0092680:intron 40.0%
!! CATATGAAATAGGTGTTGGG+AGG + chr1_2:75372215-75372234 Msa0092680:intron 40.0%
ATAAGTCATCTGTGTAGCCA+TGG + chr1_2:75372247-75372266 Msa0092680:intron 40.0%
AAACAAAGCTTGTCCTTCCA+TGG - chr1_2:75372267-75372286 None:intergenic 40.0%
TTATGACACATCACCCAAGT+CGG - chr1_2:75372310-75372329 None:intergenic 40.0%
!! AATGGGTTACGAATCATGGA+TGG - chr1_2:75372352-75372371 None:intergenic 40.0%
TCCATGATTCGTAACCCATT+TGG + chr1_2:75372352-75372371 Msa0092680:intron 40.0%
!! ACCAAATGGGTTACGAATCA+TGG - chr1_2:75372356-75372375 None:intergenic 40.0%
TTTGTTGGGTATGAAGCAAG+AGG + chr1_2:75372378-75372397 Msa0092680:intron 40.0%
TTGTTGGGTATGAAGCAAGA+GGG + chr1_2:75372379-75372398 Msa0092680:intron 40.0%
AAATGACTATGGCATGGAAG+TGG + chr1_2:75372661-75372680 Msa0092680:intron 40.0%
! TTTTTATTCTCCTCTGCCCT+AGG - chr1_2:75372698-75372717 None:intergenic 40.0%
GGAAAAGATGTCTTTATGGG+TGG + chr1_2:75372789-75372808 Msa0092680:intron 40.0%
GAACCAATGAAGAACAAAGC+TGG + chr1_2:75372811-75372830 Msa0092680:intron 40.0%
!! CTTCCAGCTTTGTTCTTCAT+TGG - chr1_2:75372817-75372836 None:intergenic 40.0%
CATTAGGTCTTCATGCATGT+AGG - chr1_2:75372933-75372952 None:intergenic 40.0%
ATACGAGATTCGTTGTTCGA+TGG - chr1_2:75372960-75372979 None:intergenic 40.0%
AGTAGCCAAGGTGATATCAA+AGG + chr1_2:75372980-75372999 Msa0092680:intron 40.0%
CTTTGCCTTTGATATCACCT+TGG - chr1_2:75372988-75373007 None:intergenic 40.0%
TGAGCTTGAAGATGAAGTTG+TGG + chr1_2:75373058-75373077 Msa0092680:intron 40.0%
GAGCTTGAAGATGAAGTTGT+GGG + chr1_2:75373059-75373078 Msa0092680:intron 40.0%
AGCTTGAAGATGAAGTTGTG+GGG + chr1_2:75373060-75373079 Msa0092680:intron 40.0%
TCTTCATGTAGCAACAGCAT+AGG - chr1_2:75373106-75373125 None:intergenic 40.0%
ATGCTGTTGCTACATGAAGA+TGG + chr1_2:75373106-75373125 Msa0092680:intron 40.0%
!! GCTACATGAAGATGGATTGT+TGG + chr1_2:75373114-75373133 Msa0092680:intron 40.0%
AGAGCAACACAAAGTTTGAG+AGG + chr1_2:75373255-75373274 Msa0092680:intron 40.0%
AAAGAGTTCTTTGGCATGAC+TGG + chr1_2:75373293-75373312 Msa0092680:intron 40.0%
AAGAGTTCTTTGGCATGACT+GGG + chr1_2:75373294-75373313 Msa0092680:intron 40.0%
AGGATAAGGTGAAACTTGAG+AGG + chr1_2:75373439-75373458 Msa0092680:intron 40.0%
CTCAAACTCCTTCAACTAAC+AGG - chr1_2:75373479-75373498 None:intergenic 40.0%
GTTTCGGCAAAAAACCTTAC+CGG + chr1_2:75373684-75373703 Msa0092680:intron 40.0%
CAAAAAACCTTACCGGAAGA+TGG + chr1_2:75373691-75373710 Msa0092680:intron 40.0%
GAAAATAACATGCTCGGCAA+CGG + chr1_2:75373735-75373754 Msa0092680:intron 40.0%
!! GTTCTGGATCCAGGTTTTTA+GGG - chr1_2:75373833-75373852 None:intergenic 40.0%
!! ACCTTACAAACTGGTCTTGT+CGG - chr1_2:75373920-75373939 None:intergenic 40.0%
AAGAATGCCCAAGCTCTATT+TGG + chr1_2:75373941-75373960 Msa0092680:intron 40.0%
AGAATGCCCAAGCTCTATTT+GGG + chr1_2:75373942-75373961 Msa0092680:intron 40.0%
! AGGACTGAATATTTGGAGTG+AGG - chr1_2:75373982-75374001 None:intergenic 40.0%
CACACTCAGGACTGAATATT+TGG - chr1_2:75373989-75374008 None:intergenic 40.0%
! TCTGGTTTCCTCATAAACTC+AGG + chr1_2:75374350-75374369 Msa0092680:intron 40.0%
!!! GCAAGATTTTTGGCAACTGA+TGG - chr1_2:75374711-75374730 None:intergenic 40.0%
CATACCGAAAGTTCTTGGTT+CGG + chr1_2:75375149-75375168 Msa0092680:three_prime_UTR 40.0%
CGCTCTTCACTCTGTCAAAA+TGG - chr1_2:75369632-75369651 None:intergenic 45.0%
TTGAATGGAGAAGCGAGAGA+GGG - chr1_2:75369718-75369737 None:intergenic 45.0%
! AACCGAACATTTTCACCTGC+TGG - chr1_2:75369924-75369943 None:intergenic 45.0%
TCGGTTTCGGTTGGACAATT+TGG + chr1_2:75369938-75369957 Msa0092680:CDS 45.0%
CGGTTTCGGTTGGACAATTT+GGG + chr1_2:75369939-75369958 Msa0092680:CDS 45.0%
AGAGCAAAGAGAAAGGGAAG+AGG + chr1_2:75369984-75370003 Msa0092680:CDS 45.0%
CAAAAATCTCGATCTGGACC+TGG + chr1_2:75370053-75370072 Msa0092680:CDS 45.0%
TTGGGCAATCGTCGATAAAG+TGG - chr1_2:75370110-75370129 None:intergenic 45.0%
CCCAAACTTAGAGGAATTGC+AGG + chr1_2:75370125-75370144 Msa0092680:CDS 45.0%
ATTGCGCAAAAGCTCCCATT+TGG - chr1_2:75370378-75370397 None:intergenic 45.0%
CTTGATCACTCCCTAACAGT+AGG - chr1_2:75370598-75370617 None:intergenic 45.0%
AGTATGCCTATTACAGGAGC+CGG + chr1_2:75370740-75370759 Msa0092680:intron 45.0%
CTGGTAGACATAGAAGATGC+TGG + chr1_2:75371175-75371194 Msa0092680:CDS 45.0%
TGGATTTCAAGAAGGGGAAG+AGG + chr1_2:75371195-75371214 Msa0092680:CDS 45.0%
GTGTGATTAACCCATCAGGA+AGG + chr1_2:75371245-75371264 Msa0092680:CDS 45.0%
TTAACCCATCAGGAAGGGAA+CGG + chr1_2:75371251-75371270 Msa0092680:CDS 45.0%
AAGAGGGCTTAGGTTTGAGA+GGG + chr1_2:75371890-75371909 Msa0092680:intron 45.0%
CTTCTCTACTCCCTATACCA+AGG - chr1_2:75371950-75371969 None:intergenic 45.0%
TTGGTATCAAGGCTCCATCA+AGG + chr1_2:75372056-75372075 Msa0092680:intron 45.0%
! AAAGGCACACATGGATGTCA+TGG + chr1_2:75372123-75372142 Msa0092680:intron 45.0%
AATGCTCCAAAACCCGACTT+GGG + chr1_2:75372294-75372313 Msa0092680:intron 45.0%
TATGACACATCACCCAAGTC+GGG - chr1_2:75372309-75372328 None:intergenic 45.0%
AGATTGAAGCTACCCTTGGA+CGG + chr1_2:75372501-75372520 Msa0092680:intron 45.0%
GAGTGAAGAAAAGAGTCGGT+CGG + chr1_2:75372564-75372583 Msa0092680:intron 45.0%
AAGAAAAGAGTCGGTCGGTT+TGG + chr1_2:75372569-75372588 Msa0092680:intron 45.0%
GGAGTGAAATGACTATGGCA+TGG + chr1_2:75372655-75372674 Msa0092680:intron 45.0%
! GCATGGAAGTGGAAGTTGAT+CGG + chr1_2:75372672-75372691 Msa0092680:intron 45.0%
ACTTCTGTTAGGTTACCAGG+TGG - chr1_2:75372759-75372778 None:intergenic 45.0%
ACCTGGTAACCTAACAGAAG+TGG + chr1_2:75372758-75372777 Msa0092680:intron 45.0%
TCCACTTCTGTTAGGTTACC+AGG - chr1_2:75372762-75372781 None:intergenic 45.0%
CACATCATTGTTGAATGCGG+AGG + chr1_2:75372847-75372866 Msa0092680:intron 45.0%
!! GTACAAGAGCACACTTTTGG+TGG - chr1_2:75372873-75372892 None:intergenic 45.0%
GTGTGCTCTTGTACAAAGGA+TGG + chr1_2:75372879-75372898 Msa0092680:intron 45.0%
!! GTTGTTCGATGGTGGACATT+AGG - chr1_2:75372949-75372968 None:intergenic 45.0%
CGAATCTCGTATAGTAGCCA+AGG + chr1_2:75372968-75372987 Msa0092680:intron 45.0%
TGACAACTTCAACCTTTGGG+TGG + chr1_2:75373032-75373051 Msa0092680:intron 45.0%
CATCAATGCATGAGCCTATG+CGG - chr1_2:75373161-75373180 None:intergenic 45.0%
! TAGGCTCATGCATTGATGAG+AGG + chr1_2:75373163-75373182 Msa0092680:intron 45.0%
GCAACACAAAGTTTGAGAGG+CGG + chr1_2:75373258-75373277 Msa0092680:intron 45.0%
CAACACAAAGTTTGAGAGGC+GGG + chr1_2:75373259-75373278 Msa0092680:intron 45.0%
ACTGGGAGTCAAACTGTCAA+AGG + chr1_2:75373311-75373330 Msa0092680:intron 45.0%
CTGGGAGTCAAACTGTCAAA+GGG + chr1_2:75373312-75373331 Msa0092680:intron 45.0%
GTCTTGCTGCAGCTAGAATA+AGG - chr1_2:75373389-75373408 None:intergenic 45.0%
! TAGCTGCAGCAAGACTGTTT+TGG + chr1_2:75373394-75373413 Msa0092680:intron 45.0%
CCTCCTGTATGGTTCAGTTT+CGG + chr1_2:75373668-75373687 Msa0092680:intron 45.0%
TTGCCGAAACTGAACCATAC+AGG - chr1_2:75373674-75373693 None:intergenic 45.0%
GCTTATAGGAAGCCATCTTC+CGG - chr1_2:75373706-75373725 None:intergenic 45.0%
! GCTTCCTATAAGCCTTGTGA+AGG + chr1_2:75373713-75373732 Msa0092680:intron 45.0%
!!! TGGATCCAGGTTTTTAGGGT+TGG - chr1_2:75373829-75373848 None:intergenic 45.0%
!!! GGTTCTGGATCCAGGTTTTT+AGG - chr1_2:75373834-75373853 None:intergenic 45.0%
AAATACGCTGTTACCAGAGC+AGG - chr1_2:75373855-75373874 None:intergenic 45.0%
ACCGACAAGACCAGTTTGTA+AGG + chr1_2:75373916-75373935 Msa0092680:intron 45.0%
AGGCTTCCCAAATAGAGCTT+GGG - chr1_2:75373951-75373970 None:intergenic 45.0%
AAGGCTTCCCAAATAGAGCT+TGG - chr1_2:75373952-75373971 None:intergenic 45.0%
! TTTGGAGTGAGGACAAACGA+AGG - chr1_2:75373971-75373990 None:intergenic 45.0%
TATTCAGTCCTGAGTGTGTG+AGG + chr1_2:75373991-75374010 Msa0092680:intron 45.0%
ATTCAGTCCTGAGTGTGTGA+GGG + chr1_2:75373992-75374011 Msa0092680:intron 45.0%
ATACGCTACCAAGTGGGAAA+AGG + chr1_2:75374281-75374300 Msa0092680:intron 45.0%
! TTCCACGCTTTTCGTCACAA+TGG + chr1_2:75374480-75374499 Msa0092680:intron 45.0%
ATCCATTGTGACGAAAAGCG+TGG - chr1_2:75374485-75374504 None:intergenic 45.0%
!! GTTTGTTGTGCTCTGGTTTC+AGG + chr1_2:75374554-75374573 Msa0092680:intron 45.0%
AAGTTTCTCCTTCGCTGATG+TGG - chr1_2:75374634-75374653 None:intergenic 45.0%
AAGGAGAAACTTGAGTCTGC+TGG + chr1_2:75374642-75374661 Msa0092680:CDS 45.0%
TGTTCCATCACTGTGATTCC+TGG + chr1_2:75374666-75374685 Msa0092680:CDS 45.0%
TGATTCCTGGCCGTAAGAAA+TGG + chr1_2:75374679-75374698 Msa0092680:CDS 45.0%
GATTCCTGGCCGTAAGAAAT+GGG + chr1_2:75374680-75374699 Msa0092680:CDS 45.0%
TTAACCCATTTCTTACGGCC+AGG - chr1_2:75374687-75374706 None:intergenic 45.0%
! CTTCTTGGCGAAGTATTCGT+CGG - chr1_2:75374739-75374758 None:intergenic 45.0%
!! GTTTGCTTGTCGATTTGTGC+TGG + chr1_2:75375018-75375037 Msa0092680:three_prime_UTR 45.0%
CGATTTGTGCTGGAAACCTT+TGG + chr1_2:75375028-75375047 Msa0092680:three_prime_UTR 45.0%
TTGTGCTGGAAACCTTTGGT+AGG + chr1_2:75375032-75375051 Msa0092680:three_prime_UTR 45.0%
AGGTGCATACCGAAAGTTCT+TGG + chr1_2:75375144-75375163 Msa0092680:three_prime_UTR 45.0%
!!! TTTTATAAAAATAAAAGAAA+AGG - chr1_2:75371105-75371124 None:intergenic 5.0%
!!! TTTTATAAAAAAACATAATA+AGG + chr1_2:75371115-75371134 Msa0092680:intron 5.0%
AGAGAGGGTAACCAGGAAAC+AGG - chr1_2:75369703-75369722 None:intergenic 50.0%
CTTGAATGGAGAAGCGAGAG+AGG - chr1_2:75369719-75369738 None:intergenic 50.0%
CTCTCTCGCTTCTCCATTCA+AGG + chr1_2:75369717-75369736 Msa0092680:CDS 50.0%
GGACAATTTGGGTCCACAAC+CGG + chr1_2:75369950-75369969 Msa0092680:CDS 50.0%
GACAATTTGGGTCCACAACC+GGG + chr1_2:75369951-75369970 Msa0092680:CDS 50.0%
CTCTTTCTTGAACCCGGTTG+TGG - chr1_2:75369966-75369985 None:intergenic 50.0%
! CAAGGAGCGAGTTGTGGTTT+TGG + chr1_2:75370020-75370039 Msa0092680:CDS 50.0%
TCTGGACCTGGTATCATGAG+AGG + chr1_2:75370065-75370084 Msa0092680:CDS 50.0%
CGACGATTGCCCAAACTTAG+AGG + chr1_2:75370116-75370135 Msa0092680:CDS 50.0%
GCATATCCGGCTCCTGTAAT+AGG - chr1_2:75370749-75370768 None:intergenic 50.0%
GTTTCCGTTCCCTTCCTGAT+GGG - chr1_2:75371258-75371277 None:intergenic 50.0%
AGTTTCCGTTCCCTTCCTGA+TGG - chr1_2:75371259-75371278 None:intergenic 50.0%
GAAGAGGGCTTAGGTTTGAG+AGG + chr1_2:75371889-75371908 Msa0092680:intron 50.0%
TTAGTATAGTCGGGGGTCCT+TGG + chr1_2:75371930-75371949 Msa0092680:intron 50.0%
TCAAGGCTCCATCAAGGAGT+TGG + chr1_2:75372062-75372081 Msa0092680:intron 50.0%
CAAGGCTCCATCAAGGAGTT+GGG + chr1_2:75372063-75372082 Msa0092680:intron 50.0%
GCACACATGGATGTCATGGA+TGG + chr1_2:75372127-75372146 Msa0092680:intron 50.0%
CATGGATGTCATGGATGGTG+AGG + chr1_2:75372132-75372151 Msa0092680:intron 50.0%
TGGGGAAGATGCATCTGTGT+TGG + chr1_2:75372168-75372187 Msa0092680:intron 50.0%
GTCATCTGTGTAGCCATGGA+AGG + chr1_2:75372251-75372270 Msa0092680:intron 50.0%
CAATGCTCCAAAACCCGACT+TGG + chr1_2:75372293-75372312 Msa0092680:intron 50.0%
! ACATCACCCAAGTCGGGTTT+TGG - chr1_2:75372303-75372322 None:intergenic 50.0%
GGTTACGAATCATGGATGGC+TGG - chr1_2:75372348-75372367 None:intergenic 50.0%
AGGGCTTGTGCATGAATGCA+AGG + chr1_2:75372398-75372417 Msa0092680:intron 50.0%
GGCAAGATTGAAGCTACCCT+TGG + chr1_2:75372497-75372516 Msa0092680:intron 50.0%
GATTGAAGCTACCCTTGGAC+GGG + chr1_2:75372502-75372521 Msa0092680:intron 50.0%
TCCAATAGTGACCCGTCCAA+GGG - chr1_2:75372516-75372535 None:intergenic 50.0%
! AAGTGGAAGTTGATCGGCCT+AGG + chr1_2:75372678-75372697 Msa0092680:intron 50.0%
! AGTGGAAGTTGATCGGCCTA+GGG + chr1_2:75372679-75372698 Msa0092680:intron 50.0%
ATTACCGAACAGGGGACAGT+AGG + chr1_2:75372720-75372739 Msa0092680:intron 50.0%
CAATCCTACTGTCCCCTGTT+CGG - chr1_2:75372727-75372746 None:intergenic 50.0%
CGAGATTCGTTGTTCGATGG+TGG - chr1_2:75372957-75372976 None:intergenic 50.0%
TCAAGCTCAATGCCACCCAA+AGG - chr1_2:75373047-75373066 None:intergenic 50.0%
TTCAAAGAGGCTGACCGCAT+AGG + chr1_2:75373144-75373163 Msa0092680:intron 50.0%
GCAGGCGTCAAAGAGTTCTT+TGG + chr1_2:75373284-75373303 Msa0092680:intron 50.0%
! GCTTGTAGTTTGTGGGAGCT+AGG + chr1_2:75373503-75373522 Msa0092680:intron 50.0%
GGCCAACTGAAGACTCATCA+GGG - chr1_2:75373610-75373629 None:intergenic 50.0%
TGCTCTTTGAGCCTCCTGTA+TGG + chr1_2:75373657-75373676 Msa0092680:intron 50.0%
CCGAAACTGAACCATACAGG+AGG - chr1_2:75373671-75373690 None:intergenic 50.0%
TAGGAAGCCATCTTCCGGTA+AGG - chr1_2:75373701-75373720 None:intergenic 50.0%
!! TCTAGGGTTAGCCTTGACGA+CGG + chr1_2:75373803-75373822 Msa0092680:intron 50.0%
!! CTGGTCTTGTCGGTTCAGTT+AGG - chr1_2:75373910-75373929 None:intergenic 50.0%
TTCAGTCCTGAGTGTGTGAG+GGG + chr1_2:75373993-75374012 Msa0092680:intron 50.0%
CTACCAAGTGGGAAAAGGCA+TGG + chr1_2:75374286-75374305 Msa0092680:intron 50.0%
! TGCCTTTTCCACATCAGCGA+AGG + chr1_2:75374623-75374642 Msa0092680:CDS 50.0%
CTCCTTCGCTGATGTGGAAA+AGG - chr1_2:75374628-75374647 None:intergenic 50.0%
! GTCGGCACGTGCAAGATTTT+TGG - chr1_2:75374721-75374740 None:intergenic 50.0%
! GGCACCGAACCAAGAACTTT+CGG - chr1_2:75375156-75375175 None:intergenic 50.0%
AGAAGCGAGAGAGGGTAACC+AGG - chr1_2:75369710-75369729 None:intergenic 55.0%
TCTGCTTCGGTGAAACCAGC+AGG + chr1_2:75369906-75369925 Msa0092680:CDS 55.0%
!! AAGGGAAGAGGTATTGCCGC+AGG + chr1_2:75369996-75370015 Msa0092680:CDS 55.0%
!! AGAGGTATTGCCGCAGGACA+AGG + chr1_2:75370002-75370021 Msa0092680:CDS 55.0%
ACAACTCGCTCCTTGTCCTG+CGG - chr1_2:75370015-75370034 None:intergenic 55.0%
!! AGAAGGGGAAGAGGTGTCTC+TGG + chr1_2:75371204-75371223 Msa0092680:CDS 55.0%
! GGTGTCTCTGGAGACACTGA+CGG + chr1_2:75371216-75371235 Msa0092680:CDS 55.0%
TAGTCGGGGGTCCTTGGTAT+AGG + chr1_2:75371936-75371955 Msa0092680:intron 55.0%
AGTCGGGGGTCCTTGGTATA+GGG + chr1_2:75371937-75371956 Msa0092680:intron 55.0%
ACCCTTGGACGGGTCACTAT+TGG + chr1_2:75372512-75372531 Msa0092680:intron 55.0%
CTCCAATAGTGACCCGTCCA+AGG - chr1_2:75372517-75372536 None:intergenic 55.0%
CTTGGACGGGTCACTATTGG+AGG + chr1_2:75372515-75372534 Msa0092680:intron 55.0%
CAGGGGACAGTAGGATTGCA+AGG + chr1_2:75372729-75372748 Msa0092680:intron 55.0%
GGATTGCAAGGTCAACCACC+TGG + chr1_2:75372741-75372760 Msa0092680:intron 55.0%
AAGTTTGAGAGGCGGGATGC+AGG + chr1_2:75373266-75373285 Msa0092680:intron 55.0%
GGCCCTGATGAGTCTTCAGT+TGG + chr1_2:75373605-75373624 Msa0092680:intron 55.0%
GGGCCAACTGAAGACTCATC+AGG - chr1_2:75373611-75373630 None:intergenic 55.0%
!! TTTAGGGTTGGCCGTCGTCA+AGG - chr1_2:75373817-75373836 None:intergenic 55.0%
GACGGCCAACCCTAAAAACC+TGG + chr1_2:75373821-75373840 Msa0092680:intron 55.0%
GCTGTTACCAGAGCAGGTTC+TGG - chr1_2:75373849-75373868 None:intergenic 55.0%
! CCACCATGCCTTTTCCCACT+TGG - chr1_2:75374292-75374311 None:intergenic 55.0%
! CCAAGTGGGAAAAGGCATGG+TGG + chr1_2:75374289-75374308 Msa0092680:intron 55.0%
! AGTGGGAAAAGGCATGGTGG+TGG + chr1_2:75374292-75374311 Msa0092680:intron 55.0%
ACGGCCAGGAATCACAGTGA+TGG - chr1_2:75374673-75374692 None:intergenic 55.0%
AGCAGCTGCTTCTCGCTTCT+TGG - chr1_2:75374754-75374773 None:intergenic 55.0%
GCAGGACAAGGAGCGAGTTG+TGG + chr1_2:75370014-75370033 Msa0092680:CDS 60.0%
AGTTGATCGGCCTAGGGCAG+AGG + chr1_2:75372685-75372704 Msa0092680:intron 60.0%
!! CCAGAGCAGGTTCTGGATCC+AGG - chr1_2:75373842-75373861 None:intergenic 60.0%
CCTGGATCCAGAACCTGCTC+TGG + chr1_2:75373839-75373858 Msa0092680:intron 60.0%
AGTCCTGAGTGTGTGAGGGG+AGG + chr1_2:75373996-75374015 Msa0092680:intron 60.0%
ACACCTCCCCTCACACACTC+AGG - chr1_2:75374002-75374021 None:intergenic 60.0%
CATGCTCGGCAACGGCAGTG+CGG + chr1_2:75373743-75373762 Msa0092680:intron 65.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 75369582 75375217 75369582 ID=Msa0092680;Name=Msa0092680
chr1_2 mRNA 75369582 75375217 75369582 ID=Msa0092680-mRNA-1;Parent=Msa0092680;Name=Msa0092680-mRNA-1;_AED=0.01;_eAED=0.01;_QI=94|1|1|1|1|1|4|423|257
chr1_2 exon 75369582 75369738 75369582 ID=Msa0092680-mRNA-1:exon:26508;Parent=Msa0092680-mRNA-1
chr1_2 exon 75369810 75370149 75369810 ID=Msa0092680-mRNA-1:exon:26509;Parent=Msa0092680-mRNA-1
chr1_2 exon 75371137 75371288 75371137 ID=Msa0092680-mRNA-1:exon:26510;Parent=Msa0092680-mRNA-1
chr1_2 exon 75374576 75375217 75374576 ID=Msa0092680-mRNA-1:exon:26511;Parent=Msa0092680-mRNA-1
chr1_2 five_prime_UTR 75369582 75369675 75369582 ID=Msa0092680-mRNA-1:five_prime_utr;Parent=Msa0092680-mRNA-1
chr1_2 CDS 75369676 75369738 75369676 ID=Msa0092680-mRNA-1:cds;Parent=Msa0092680-mRNA-1
chr1_2 CDS 75369810 75370149 75369810 ID=Msa0092680-mRNA-1:cds;Parent=Msa0092680-mRNA-1
chr1_2 CDS 75371137 75371288 75371137 ID=Msa0092680-mRNA-1:cds;Parent=Msa0092680-mRNA-1
chr1_2 CDS 75374576 75374794 75374576 ID=Msa0092680-mRNA-1:cds;Parent=Msa0092680-mRNA-1
chr1_2 three_prime_UTR 75374795 75375217 75374795 ID=Msa0092680-mRNA-1:three_prime_utr;Parent=Msa0092680-mRNA-1
Gene Sequence

>Msa0092680

ATGAGTGCTGCTGCTTCTCTTATTCCTGTTTCCTGGTTACCCTCTCTCGCTTCTCCATTCAAGGGAAATGTGAAAACCTTGGTAGCAAAACCATATCTATGTCCATGTCTTAAAATTCAGCGAATGAAACCTCGTGTTTTTGTTGTTAATAAGGCTGCTTCTGCTTCGGTGAAACCAGCAGGTGAAAATGTTCGGTTTCGGTTGGACAATTTGGGTCCACAACCGGGTTCAAGAAAGAGAGCAAAGAGAAAGGGAAGAGGTATTGCCGCAGGACAAGGAGCGAGTTGTGGTTTTGGAATGAGAGGTCAAAAATCTCGATCTGGACCTGGTATCATGAGAGGTTTTGAAGGTGGTCAGATGCCACTTTATCGACGATTGCCCAAACTTAGAGGAATTGCAGGAGGTATGCATGCTGGATTGCCGAAATATGTCCACATCAATCTGGTAGACATAGAAGATGCTGGATTTCAAGAAGGGGAAGAGGTGTCTCTGGAGACACTGACGGAGAAACGTGTGATTAACCCATCAGGAAGGGAACGGAAACTTCTATTGAAGGTTTTGGGTGAAGGAGAACTAAGCAAGAAGTTGACAATAAAAGCTGGTGCCTTTTCCACATCAGCGAAGGAGAAACTTGAGTCTGCTGGTTGTTCCATCACTGTGATTCCTGGCCGTAAGAAATGGGTTAAGCCATCAGTTGCCAAAAATCTTGCACGTGCCGACGAATACTTCGCCAAGAAGCGAGAAGCAGCTGCTTCTGAACCAGATTCTGTTTAA

Protein sequence

>Msa0092680

MSAAASLIPVSWLPSLASPFKGNVKTLVAKPYLCPCLKIQRMKPRVFVVNKAASASVKPAGENVRFRLDNLGPQPGSRKRAKRKGRGIAAGQGASCGFGMRGQKSRSGPGIMRGFEGGQMPLYRRLPKLRGIAGGMHAGLPKYVHINLVDIEDAGFQEGEEVSLETLTEKRVINPSGRERKLLLKVLGEGELSKKLTIKAGAFSTSAKEKLESAGCSITVIPGRKKWVKPSVAKNLARADEYFAKKREAAASEPDSV*