AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0561510


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0561510 MtrunA17_Chr4g0052021 93.498 323 5 1 1 323 1 307 0.0 597
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 84 sgRNAs with CRISPR-Local

Find 175 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATAACTACAACCCTTTATT+AGG 0.204262 4_1:-61024337 Msa0561510:CDS
CCTACAAAGTCTGGTGTTCT+TGG 0.228685 4_1:-61022341 Msa0561510:CDS
ATCCTTAAGGACAGATTCTT+TGG 0.242936 4_1:+61024240 None:intergenic
GCTATCACTGCTGGAGCTTC+TGG 0.287273 4_1:-61021705 Msa0561510:CDS
TTTGAGGTTGCACCTAATAA+AGG 0.298703 4_1:+61024325 None:intergenic
CTAATAAAGGGTTGTAGTTA+TGG 0.300366 4_1:+61024338 None:intergenic
GAAATGATTAATGAGCTATT+AGG 0.303147 4_1:-61021235 Msa0561510:three_prime_UTR
AGAATAGCTTAAGGTGGTTT+AGG 0.304774 4_1:-61021411 Msa0561510:three_prime_UTR
TTGTAGTTTGTGTTTCTGTA+TGG 0.322497 4_1:-61021285 Msa0561510:three_prime_UTR
TGATGATTCATCGCTGTTGC+AGG 0.347994 4_1:-61023239 Msa0561510:CDS
CCAAGAACACCAGACTTTGT+AGG 0.348475 4_1:+61022341 None:intergenic
ACTTCCAGTAGTTCAAAATA+TGG 0.351060 4_1:-61021436 Msa0561510:exon
TAAAACGTGTGAAGAAAATC+TGG 0.379373 4_1:-61021381 Msa0561510:three_prime_UTR
TTGCATTGGCAGGTTGAGAT+TGG 0.389554 4_1:-61023034 Msa0561510:intron
ACTGCAGCTGGAAATGTTGC+AGG 0.393682 4_1:+61023196 None:intergenic
ATACCAGTCATGTGTTCATC+AGG 0.399585 4_1:-61021753 Msa0561510:CDS
TAGAAAGCAAGAAGAAAGGT+TGG 0.402247 4_1:+61024449 None:intergenic
AGAAAGTGTTAGGCATGTTA+AGG 0.406358 4_1:+61024393 None:intergenic
AAATCACTCTTTACCTGCTC+TGG 0.408496 4_1:+61022971 None:intergenic
ATGCTGCATGTAACCTGATC+GGG 0.408784 4_1:+61022519 None:intergenic
AACCAAAGAATCTGTCCTTA+AGG 0.412479 4_1:-61024242 Msa0561510:CDS
AAATGATTAATGAGCTATTA+GGG 0.415368 4_1:-61021234 Msa0561510:three_prime_UTR
TGTTCCAATCCTACAAAGTC+TGG 0.415836 4_1:-61022350 Msa0561510:CDS
AAAGGGTTGTAGTTATGGTT+TGG 0.417950 4_1:+61024343 None:intergenic
TAATGCTCTAGTAGTAAAAC+AGG 0.424552 4_1:+61024273 None:intergenic
TTGAGGTTGCACCTAATAAA+GGG 0.429461 4_1:+61024326 None:intergenic
AAGAAGGAGAAGAAAGTGTT+AGG 0.435183 4_1:+61024383 None:intergenic
AACACCAGACTTTGTAGGAT+TGG 0.437626 4_1:+61022346 None:intergenic
GCTTCATGCATGCACTACTT+TGG 0.437696 4_1:+61021150 None:intergenic
TTTAGAGATGAGATTGAAGA+AGG 0.438632 4_1:+61024367 None:intergenic
AGTTGAAGCAGGAGCACTAA+TGG 0.440355 4_1:-61023176 Msa0561510:intron
AAAATATCTGTCTCAAGAAC+AGG 0.441617 4_1:-61024553 Msa0561510:five_prime_UTR
ATAGCTAGCTTCACCAACTC+TGG 0.442713 4_1:+61023424 None:intergenic
TGTAGTTTGTGTTTCTGTAT+GGG 0.471566 4_1:-61021284 Msa0561510:three_prime_UTR
GCAGAATCACTCGAACTAGA+AGG 0.472040 4_1:-61022404 Msa0561510:CDS
CACACTAAGCCTCCCCGATC+AGG 0.472719 4_1:-61022532 Msa0561510:intron
GCTTCTAACTTCAGCAATCA+TGG 0.475487 4_1:+61021517 None:intergenic
AGTTGTCACTGCCGCAGAAA+AGG 0.478390 4_1:-61024044 Msa0561510:intron
TTTCCAGCTGCAGTTGAAGC+AGG 0.479631 4_1:-61023187 Msa0561510:CDS
TATCAGCCTAACTTCTTGTC+CGG 0.480062 4_1:-61023404 Msa0561510:intron
GCTCCTGCTTCAACTGCAGC+TGG 0.485920 4_1:+61023184 None:intergenic
TTCGTTCGCGAAAATCCTTA+AGG 0.486671 4_1:+61024227 None:intergenic
ACAGAAGTCTAAAATAGAAA+AGG 0.492536 4_1:+61021313 None:intergenic
GCACCTATGGCTATCACTGC+TGG 0.498606 4_1:-61021714 Msa0561510:CDS
TGAGTAGAAAGCAAGAAGAA+AGG 0.506900 4_1:+61024445 None:intergenic
AATATGGAAAGAATAGCTTA+AGG 0.510802 4_1:-61021420 Msa0561510:three_prime_UTR
GAATATGCAGCTGCTAAAGT+TGG 0.515315 4_1:+61021795 None:intergenic
TGCTTCTTAACGAATGGAGT+TGG 0.521919 4_1:-61021206 Msa0561510:three_prime_UTR
AAGTGCTGTCACAGCACCTA+TGG 0.524433 4_1:-61021727 Msa0561510:CDS
AGGTAGTAGACATGGCTTTG+AGG 0.531491 4_1:+61024309 None:intergenic
AATATACCGGACAAGAAGTT+AGG 0.531622 4_1:+61023398 None:intergenic
GATACACACTACACATGAAG+TGG 0.538220 4_1:-61021465 Msa0561510:CDS
TCGCGAACGAACAGCTCTCA+AGG 0.543908 4_1:-61024215 Msa0561510:intron
AGAAGAAAGGTTGGATTGAG+AGG 0.549894 4_1:+61024458 None:intergenic
ACTTCATGTGTAGTGTGTAT+CGG 0.559492 4_1:+61021467 None:intergenic
GCTCCAGCAGTGATAGCCAT+AGG 0.566389 4_1:+61021711 None:intergenic
GAAGTCTAAAATAGAAAAGG+AGG 0.572131 4_1:+61021316 None:intergenic
TGTTCTTGGTTTGATTGAGA+AGG 0.574982 4_1:-61022327 Msa0561510:intron
AAAATAACAGATAAGATATG+TGG 0.575238 4_1:+61024516 None:intergenic
AATGCTGCATGTAACCTGAT+CGG 0.576394 4_1:+61022518 None:intergenic
TTGTCTGTTTATACATGAGG+AGG 0.577358 4_1:+61024493 None:intergenic
CACTGCTGGAGCTTCTGGTG+TGG 0.580827 4_1:-61021700 Msa0561510:intron
CTGTTGTCTGTTTATACATG+AGG 0.581534 4_1:+61024490 None:intergenic
ATGGAAAGAATAGCTTAAGG+TGG 0.590085 4_1:-61021417 Msa0561510:three_prime_UTR
CATGTGTAGTGTGTATCGGA+AGG 0.594778 4_1:+61021471 None:intergenic
GTGACAGACAAAACCACAGA+TGG 0.596456 4_1:+61022564 None:intergenic
AGCCCTGATGAACACATGAC+TGG 0.597946 4_1:+61021750 None:intergenic
GTAGATATTATTCAAACTGA+GGG 0.601446 4_1:-61022380 Msa0561510:CDS
ATAGGCTATCTTAATCATTG+AGG 0.604907 4_1:-61023269 Msa0561510:intron
TAGCTAGCTTCACCAACTCT+GGG 0.607908 4_1:+61023425 None:intergenic
GATATTATTCAAACTGAGGG+AGG 0.612806 4_1:-61022377 Msa0561510:CDS
TATAGCATGTGACCCAGAGT+TGG 0.615707 4_1:-61023437 Msa0561510:CDS
ATGTGTAGTGTGTATCGGAA+GGG 0.621762 4_1:+61021472 None:intergenic
AAGGAGGATACTTCCATCTG+TGG 0.621807 4_1:-61022577 Msa0561510:CDS
TGTAGATATTATTCAAACTG+AGG 0.622046 4_1:-61022381 Msa0561510:CDS
TACCAGTCATGTGTTCATCA+GGG 0.631597 4_1:-61021752 Msa0561510:CDS
AGTTAACAAACTAAATGATG+TGG 0.633887 4_1:-61021543 Msa0561510:CDS
TCGGGGAGGCTTAGTGTGTG+CGG 0.641924 4_1:+61022537 None:intergenic
ATTACGAAATCACAGGGTGT+GGG 0.646868 4_1:-61021572 Msa0561510:intron
GTCTAACAAAAGAGACAAGG+AGG 0.671548 4_1:-61022593 Msa0561510:CDS
TGCTGCATGTAACCTGATCG+GGG 0.675641 4_1:+61022520 None:intergenic
TGAGTCTAACAAAAGAGACA+AGG 0.682958 4_1:-61022596 Msa0561510:CDS
TTCTGCGGCAGTGACAACTG+AGG 0.690999 4_1:+61024048 None:intergenic
TGCATGTAACCTGATCGGGG+AGG 0.747094 4_1:+61022523 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATAAATATAATGTTAGT+GGG + chr4_1:61023696-61023715 None:intergenic 10.0%
!! ACAAAATTTACTATAATCAT+AGG - chr4_1:61022402-61022421 Msa0561510:CDS 15.0%
!! AAAAAAATATTATACTTGAC+AGG - chr4_1:61023254-61023273 Msa0561510:CDS 15.0%
!! CTATATAAATATAATGTTAG+TGG + chr4_1:61023697-61023716 None:intergenic 15.0%
!!! ATTAGAATTTTGATAAATCA+AGG + chr4_1:61023853-61023872 None:intergenic 15.0%
!! AAAATAACAGATAAGATATG+TGG + chr4_1:61021176-61021195 None:intergenic 20.0%
!! ATGAAAAATGAGATAGAAAT+GGG + chr4_1:61021519-61021538 None:intergenic 20.0%
!! AATGAAAAATGAGATAGAAA+TGG + chr4_1:61021520-61021539 None:intergenic 20.0%
!!! TGTGTATGTTGATAAATATT+TGG - chr4_1:61021566-61021585 Msa0561510:intron 20.0%
!! TGTTAAGAACAAATCTTATA+AGG + chr4_1:61022630-61022649 None:intergenic 20.0%
!! TTCTTAACATTATATTGCAT+TGG - chr4_1:61022641-61022660 Msa0561510:intron 20.0%
!!! TTATGATTCATTTTATGAGA+AGG - chr4_1:61022681-61022700 Msa0561510:intron 20.0%
!!! TATGATTCATTTTATGAGAA+GGG - chr4_1:61022682-61022701 Msa0561510:intron 20.0%
!! ATGATAGTCACTAAAATTTA+CGG - chr4_1:61022764-61022783 Msa0561510:intron 20.0%
!! CAAAATTATTCTGATACTAT+TGG - chr4_1:61023209-61023228 Msa0561510:CDS 20.0%
!! ATCATTATCTAGCAATTAAA+AGG + chr4_1:61023812-61023831 None:intergenic 20.0%
!!! AATTTTGATAAATCAAGGAA+GGG + chr4_1:61023848-61023867 None:intergenic 20.0%
!! AAATGATTAATGAGCTATTA+GGG - chr4_1:61024455-61024474 Msa0561510:five_prime_UTR 20.0%
!! AAACAGGTTTTTCTTTTCAA+AGG + chr4_1:61021403-61021422 None:intergenic 25.0%
! CATACACATTACAACATTTA+TGG + chr4_1:61021554-61021573 None:intergenic 25.0%
! ATCTTGACATGCTATAAATT+TGG - chr4_1:61021884-61021903 Msa0561510:intron 25.0%
! AGCTGATAACTTATATGAAT+TGG - chr4_1:61021997-61022016 Msa0561510:intron 25.0%
!!! TGAATTGGTTTTTACTTGTT+AGG - chr4_1:61022012-61022031 Msa0561510:intron 25.0%
!! ATTTAGAATGATCTTCTGTT+TGG - chr4_1:61022053-61022072 Msa0561510:intron 25.0%
!! TTTAGAATGATCTTCTGTTT+GGG - chr4_1:61022054-61022073 Msa0561510:intron 25.0%
!! TTAGAAAAGCATGAATATAC+CGG + chr4_1:61022307-61022326 None:intergenic 25.0%
!!! TTTTGATTAGAGTATGAACT+TGG + chr4_1:61022576-61022595 None:intergenic 25.0%
! TTCATACTCTAATCAAAAGA+TGG - chr4_1:61022578-61022597 Msa0561510:CDS 25.0%
! TCATACTCTAATCAAAAGAT+GGG - chr4_1:61022579-61022598 Msa0561510:CDS 25.0%
! ATTGACTGACTATATACTAA+AGG - chr4_1:61022930-61022949 Msa0561510:intron 25.0%
!! ATCAGAATAATTTTGCACTT+TGG + chr4_1:61023204-61023223 None:intergenic 25.0%
! TGTAGATATTATTCAAACTG+AGG - chr4_1:61023308-61023327 Msa0561510:intron 25.0%
! GTAGATATTATTCAAACTGA+GGG - chr4_1:61023309-61023328 Msa0561510:intron 25.0%
!!! AGCATTGATTTTTAGATTGA+AGG + chr4_1:61023657-61023676 None:intergenic 25.0%
!!! GAATTTTGATAAATCAAGGA+AGG + chr4_1:61023849-61023868 None:intergenic 25.0%
!! TTCTAATCACTGATTATTGT+AGG - chr4_1:61023866-61023885 Msa0561510:intron 25.0%
! ATAAACTTACTATACCTTTC+TGG - chr4_1:61024060-61024079 Msa0561510:CDS 25.0%
! AGTTAACAAACTAAATGATG+TGG - chr4_1:61024146-61024165 Msa0561510:intron 25.0%
! AATATGGAAAGAATAGCTTA+AGG - chr4_1:61024269-61024288 Msa0561510:CDS 25.0%
!! ACAGAAGTCTAAAATAGAAA+AGG + chr4_1:61024379-61024398 None:intergenic 25.0%
! GAAATGATTAATGAGCTATT+AGG - chr4_1:61024454-61024473 Msa0561510:five_prime_UTR 25.0%
AAAATATCTGTCTCAAGAAC+AGG - chr4_1:61021136-61021155 Msa0561510:three_prime_UTR 30.0%
TTTAGAGATGAGATTGAAGA+AGG + chr4_1:61021325-61021344 None:intergenic 30.0%
CTAATAAAGGGTTGTAGTTA+TGG + chr4_1:61021354-61021373 None:intergenic 30.0%
CATAACTACAACCCTTTATT+AGG - chr4_1:61021352-61021371 Msa0561510:three_prime_UTR 30.0%
TAATGCTCTAGTAGTAAAAC+AGG + chr4_1:61021419-61021438 None:intergenic 30.0%
!! CTTCTTTTGAAGATAATCAC+AGG - chr4_1:61021589-61021608 Msa0561510:intron 30.0%
TCTAGAAGCAAATTTCAATC+AGG - chr4_1:61021923-61021942 Msa0561510:intron 30.0%
AAATCTCATGAAGATTCAAG+AGG + chr4_1:61022083-61022102 None:intergenic 30.0%
! GTCTTTGACCAAATTTTAAG+TGG - chr4_1:61022109-61022128 Msa0561510:intron 30.0%
AGAGAACACCACTTAAAATT+TGG + chr4_1:61022120-61022139 None:intergenic 30.0%
AGTAGTATTTCTTGTCAATC+AGG - chr4_1:61022210-61022229 Msa0561510:intron 30.0%
GTAGTATTTCTTGTCAATCA+GGG - chr4_1:61022211-61022230 Msa0561510:intron 30.0%
CTTTAACACTCTCATGTATA+TGG - chr4_1:61022334-61022353 Msa0561510:CDS 30.0%
! AGTAAATTTTGTAGATGCCA+AGG + chr4_1:61022394-61022413 None:intergenic 30.0%
ATAGGCTATCTTAATCATTG+AGG - chr4_1:61022420-61022439 Msa0561510:intron 30.0%
GGATGAAGTTCAAATGTTTA+TGG + chr4_1:61022609-61022628 None:intergenic 30.0%
! TAACATTATATTGCATTGGC+AGG - chr4_1:61022645-61022664 Msa0561510:intron 30.0%
CTTAAAAGTCATGCAAATGA+TGG + chr4_1:61022864-61022883 None:intergenic 30.0%
! ATTTGCATGACTTTTAAGCT+AGG - chr4_1:61022866-61022885 Msa0561510:intron 30.0%
TAATGCAAATGTAGGCAAAT+AGG + chr4_1:61023425-61023444 None:intergenic 30.0%
ATTTCCAGTAATGCAAATGT+AGG + chr4_1:61023433-61023452 None:intergenic 30.0%
! GATTGTGGCAATTTTCAAAA+TGG - chr4_1:61023473-61023492 Msa0561510:intron 30.0%
CAAGTTATTTGATCATTGAC+CGG - chr4_1:61024086-61024105 Msa0561510:CDS 30.0%
ACTTCCAGTAGTTCAAAATA+TGG - chr4_1:61024253-61024272 Msa0561510:CDS 30.0%
!! CTTTCCATATTTTGAACTAC+TGG + chr4_1:61024260-61024279 None:intergenic 30.0%
TAAAACGTGTGAAGAAAATC+TGG - chr4_1:61024308-61024327 Msa0561510:CDS 30.0%
!!! GCAGTTCTTATTTTTAAGGA+AGG + chr4_1:61024336-61024355 None:intergenic 30.0%
!!! CCTAGCAGTTCTTATTTTTA+AGG + chr4_1:61024340-61024359 None:intergenic 30.0%
CCTTAAAAATAAGAACTGCT+AGG - chr4_1:61024337-61024356 Msa0561510:CDS 30.0%
TAGAAAAGGAGGAAAAAAGA+TGG + chr4_1:61024365-61024384 None:intergenic 30.0%
! GAAGTCTAAAATAGAAAAGG+AGG + chr4_1:61024376-61024395 None:intergenic 30.0%
! TTGTAGTTTGTGTTTCTGTA+TGG - chr4_1:61024404-61024423 Msa0561510:exon 30.0%
! TGTAGTTTGTGTTTCTGTAT+GGG - chr4_1:61024405-61024424 Msa0561510:exon 30.0%
TTGTCTGTTTATACATGAGG+AGG + chr4_1:61021199-61021218 None:intergenic 35.0%
CTGTTGTCTGTTTATACATG+AGG + chr4_1:61021202-61021221 None:intergenic 35.0%
TAGAAAGCAAGAAGAAAGGT+TGG + chr4_1:61021243-61021262 None:intergenic 35.0%
TGAGTAGAAAGCAAGAAGAA+AGG + chr4_1:61021247-61021266 None:intergenic 35.0%
!! AGAAAGTGTTAGGCATGTTA+AGG + chr4_1:61021299-61021318 None:intergenic 35.0%
!! AAGAAGGAGAAGAAAGTGTT+AGG + chr4_1:61021309-61021328 None:intergenic 35.0%
AAAGGGTTGTAGTTATGGTT+TGG + chr4_1:61021349-61021368 None:intergenic 35.0%
TTGAGGTTGCACCTAATAAA+GGG + chr4_1:61021366-61021385 None:intergenic 35.0%
! TTTGAGGTTGCACCTAATAA+AGG + chr4_1:61021367-61021386 None:intergenic 35.0%
! CTTTTCAAAGGTAGTAGACA+TGG + chr4_1:61021391-61021410 None:intergenic 35.0%
AACCAAAGAATCTGTCCTTA+AGG - chr4_1:61021447-61021466 Msa0561510:exon 35.0%
ATCCTTAAGGACAGATTCTT+TGG + chr4_1:61021452-61021471 None:intergenic 35.0%
!! AGATAGAAATGGGTTTTGCA+TGG + chr4_1:61021509-61021528 None:intergenic 35.0%
! GAAGTAAAGAACCTTTTCTG+CGG + chr4_1:61021659-61021678 None:intergenic 35.0%
CTGTCAAATGCACTAATCAT+TGG + chr4_1:61021715-61021734 None:intergenic 35.0%
ATACATCTGAGGAAGAGAAA+AGG + chr4_1:61021964-61021983 None:intergenic 35.0%
!! TTTTAAGTGGTGTTCTCTGA+TGG - chr4_1:61022122-61022141 Msa0561510:intron 35.0%
AATATACCGGACAAGAAGTT+AGG + chr4_1:61022294-61022313 None:intergenic 35.0%
!! GTTTATTGACTTAAGCAGAG+AGG - chr4_1:61022356-61022375 Msa0561510:CDS 35.0%
AGAGGAATTGAAAAATGCCT+TGG - chr4_1:61022374-61022393 Msa0561510:CDS 35.0%
TGGAAATGGAACTAGACAAA+AGG + chr4_1:61022544-61022563 None:intergenic 35.0%
TATGAACTTGGAACTGATAC+TGG + chr4_1:61022564-61022583 None:intergenic 35.0%
AAAGTCATGCAAATGATGGT+TGG + chr4_1:61022860-61022879 None:intergenic 35.0%
TGAGTCTAACAAAAGAGACA+AGG - chr4_1:61023093-61023112 Msa0561510:intron 35.0%
GATATTATTCAAACTGAGGG+AGG - chr4_1:61023312-61023331 Msa0561510:intron 35.0%
! TGTTCTTGGTTTGATTGAGA+AGG - chr4_1:61023362-61023381 Msa0561510:intron 35.0%
TTTGCCTACATTTGCATTAC+TGG - chr4_1:61023426-61023445 Msa0561510:CDS 35.0%
ATGCATCACATCAATGATTG+TGG - chr4_1:61023458-61023477 Msa0561510:CDS 35.0%
TCACTATGTTAGTACTTCGT+AGG + chr4_1:61023506-61023525 None:intergenic 35.0%
!! TTTTAGATTGAAGGTGTGTC+AGG + chr4_1:61023648-61023667 None:intergenic 35.0%
AACTTACTATACCTTTCTGG+CGG - chr4_1:61024063-61024082 Msa0561510:CDS 35.0%
TATTTGATCATTGACCGGTT+CGG - chr4_1:61024091-61024110 Msa0561510:CDS 35.0%
ACTTCATGTGTAGTGTGTAT+CGG + chr4_1:61024225-61024244 None:intergenic 35.0%
ATGGAAAGAATAGCTTAAGG+TGG - chr4_1:61024272-61024291 Msa0561510:CDS 35.0%
AGAATAGCTTAAGGTGGTTT+AGG - chr4_1:61024278-61024297 Msa0561510:CDS 35.0%
AGAAGAAAGGTTGGATTGAG+AGG + chr4_1:61021234-61021253 None:intergenic 40.0%
TTCGTTCGCGAAAATCCTTA+AGG + chr4_1:61021465-61021484 None:intergenic 40.0%
GGAAGAGAAAAGGAGACTTT+AGG + chr4_1:61021954-61021973 None:intergenic 40.0%
TCCTCAGATGTATAGCTGAT+AGG - chr4_1:61021971-61021990 Msa0561510:intron 40.0%
GTATTTCTTGTCAATCAGGG+AGG - chr4_1:61022214-61022233 Msa0561510:intron 40.0%
TATCAGCCTAACTTCTTGTC+CGG - chr4_1:61022285-61022304 Msa0561510:intron 40.0%
CTTGGAACTGATACTGGAAA+TGG + chr4_1:61022558-61022577 None:intergenic 40.0%
! AGTGATTTTTACTCCAGAGC+AGG - chr4_1:61022705-61022724 Msa0561510:intron 40.0%
AAATCACTCTTTACCTGCTC+TGG + chr4_1:61022721-61022740 None:intergenic 40.0%
GTCTAACAAAAGAGACAAGG+AGG - chr4_1:61023096-61023115 Msa0561510:intron 40.0%
AATGCTGCATGTAACCTGAT+CGG + chr4_1:61023174-61023193 None:intergenic 40.0%
TGTTCCAATCCTACAAAGTC+TGG - chr4_1:61023339-61023358 Msa0561510:intron 40.0%
AACACCAGACTTTGTAGGAT+TGG + chr4_1:61023346-61023365 None:intergenic 40.0%
GAATATGCAGCTGCTAAAGT+TGG + chr4_1:61023897-61023916 None:intergenic 40.0%
ATACCAGTCATGTGTTCATC+AGG - chr4_1:61023936-61023955 Msa0561510:intron 40.0%
TACCAGTCATGTGTTCATCA+GGG - chr4_1:61023937-61023956 Msa0561510:intron 40.0%
GATTTCGTAATACACCGAAC+CGG + chr4_1:61024108-61024127 None:intergenic 40.0%
TCGGTGTATTACGAAATCAC+AGG - chr4_1:61024110-61024129 Msa0561510:intron 40.0%
CGGTGTATTACGAAATCACA+GGG - chr4_1:61024111-61024130 Msa0561510:intron 40.0%
TATTACGAAATCACAGGGTG+TGG - chr4_1:61024116-61024135 Msa0561510:intron 40.0%
ATTACGAAATCACAGGGTGT+GGG - chr4_1:61024117-61024136 Msa0561510:intron 40.0%
GCTTCTAACTTCAGCAATCA+TGG + chr4_1:61024175-61024194 None:intergenic 40.0%
ATGTGTAGTGTGTATCGGAA+GGG + chr4_1:61024220-61024239 None:intergenic 40.0%
GATACACACTACACATGAAG+TGG - chr4_1:61024224-61024243 Msa0561510:CDS 40.0%
! GCGTTTTGCTTCTTAACGAA+TGG - chr4_1:61024477-61024496 Msa0561510:five_prime_UTR 40.0%
TGCTTCTTAACGAATGGAGT+TGG - chr4_1:61024483-61024502 Msa0561510:five_prime_UTR 40.0%
! AGGTAGTAGACATGGCTTTG+AGG + chr4_1:61021383-61021402 None:intergenic 45.0%
GCCTATCAGCTATACATCTG+AGG + chr4_1:61021975-61021994 None:intergenic 45.0%
TATAGCATGTGACCCAGAGT+TGG - chr4_1:61022252-61022271 Msa0561510:intron 45.0%
! TAGCTAGCTTCACCAACTCT+GGG + chr4_1:61022267-61022286 None:intergenic 45.0%
! ATAGCTAGCTTCACCAACTC+TGG + chr4_1:61022268-61022287 None:intergenic 45.0%
TGATGATTCATCGCTGTTGC+AGG - chr4_1:61022450-61022469 Msa0561510:intron 45.0%
!! AGTTGAAGCAGGAGCACTAA+TGG - chr4_1:61022513-61022532 Msa0561510:intron 45.0%
! TTGCATTGGCAGGTTGAGAT+TGG - chr4_1:61022655-61022674 Msa0561510:intron 45.0%
AGACTCAGAATCTGCACAGA+AGG + chr4_1:61023080-61023099 None:intergenic 45.0%
AAGGAGGATACTTCCATCTG+TGG - chr4_1:61023112-61023131 Msa0561510:intron 45.0%
GTGACAGACAAAACCACAGA+TGG + chr4_1:61023128-61023147 None:intergenic 45.0%
ATGCTGCATGTAACCTGATC+GGG + chr4_1:61023173-61023192 None:intergenic 45.0%
GCAGAATCACTCGAACTAGA+AGG - chr4_1:61023285-61023304 Msa0561510:intron 45.0%
CCAAGAACACCAGACTTTGT+AGG + chr4_1:61023351-61023370 None:intergenic 45.0%
CCTACAAAGTCTGGTGTTCT+TGG - chr4_1:61023348-61023367 Msa0561510:intron 45.0%
AGTGACATAGACAGAGACAC+CGG - chr4_1:61023521-61023540 Msa0561510:intron 45.0%
CTACATGCAAGTGTCACATC+CGG + chr4_1:61023543-61023562 None:intergenic 45.0%
! ATTGAAGGTGTGTCAGGTGT+CGG + chr4_1:61023642-61023661 None:intergenic 45.0%
! CAAATAACTTGCCGCCAGAA+AGG + chr4_1:61024077-61024096 None:intergenic 45.0%
CATGTGTAGTGTGTATCGGA+AGG + chr4_1:61024221-61024240 None:intergenic 45.0%
GCTTCATGCATGCACTACTT+TGG + chr4_1:61024542-61024561 None:intergenic 45.0%
!! AATTTACAATAAAAAATATT+GGG + chr4_1:61024027-61024046 None:intergenic 5.0%
!! TAATTTACAATAAAAAATAT+TGG + chr4_1:61024028-61024047 None:intergenic 5.0%
AGTTGTCACTGCCGCAGAAA+AGG - chr4_1:61021645-61021664 Msa0561510:intron 50.0%
ACTGCAGCTGGAAATGTTGC+AGG + chr4_1:61022496-61022515 None:intergenic 50.0%
TTTCCAGCTGCAGTTGAAGC+AGG - chr4_1:61022502-61022521 Msa0561510:intron 50.0%
TGCTGCATGTAACCTGATCG+GGG + chr4_1:61023172-61023191 None:intergenic 50.0%
AGCCCTGATGAACACATGAC+TGG + chr4_1:61023942-61023961 None:intergenic 50.0%
! AAGTGCTGTCACAGCACCTA+TGG - chr4_1:61023962-61023981 Msa0561510:intron 50.0%
TCGCGAACGAACAGCTCTCA+AGG - chr4_1:61021474-61021493 Msa0561510:CDS 55.0%
TTCTGCGGCAGTGACAACTG+AGG + chr4_1:61021644-61021663 None:intergenic 55.0%
TGCATGTAACCTGATCGGGG+AGG + chr4_1:61023169-61023188 None:intergenic 55.0%
GCACCTATGGCTATCACTGC+TGG - chr4_1:61023975-61023994 Msa0561510:intron 55.0%
GCTCCAGCAGTGATAGCCAT+AGG + chr4_1:61023981-61024000 None:intergenic 55.0%
GCTATCACTGCTGGAGCTTC+TGG - chr4_1:61023984-61024003 Msa0561510:intron 55.0%
CTGGAGCTTCTGGTGTGGTA+AGG - chr4_1:61023994-61024013 Msa0561510:intron 55.0%
GCTCCTGCTTCAACTGCAGC+TGG + chr4_1:61022508-61022527 None:intergenic 60.0%
TCGGGGAGGCTTAGTGTGTG+CGG + chr4_1:61023155-61023174 None:intergenic 60.0%
CACACTAAGCCTCCCCGATC+AGG - chr4_1:61023157-61023176 Msa0561510:intron 60.0%
CACTGCTGGAGCTTCTGGTG+TGG - chr4_1:61023989-61024008 Msa0561510:intron 60.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 61021135 61024576 61021135 ID=Msa0561510;Name=Msa0561510
chr4_1 mRNA 61021135 61024576 61021135 ID=Msa0561510-mRNA-1;Parent=Msa0561510;Name=Msa0561510-mRNA-1;_AED=0.12;_eAED=0.12;_QI=154|1|0.88|1|1|1|9|313|323
chr4_1 exon 61021135 61021579 61021135 ID=Msa0561510-mRNA-1:exon:19127;Parent=Msa0561510-mRNA-1
chr4_1 exon 61021701 61021823 61021701 ID=Msa0561510-mRNA-1:exon:19126;Parent=Msa0561510-mRNA-1
chr4_1 exon 61022328 61022435 61022328 ID=Msa0561510-mRNA-1:exon:19125;Parent=Msa0561510-mRNA-1
chr4_1 exon 61022533 61022622 61022533 ID=Msa0561510-mRNA-1:exon:19124;Parent=Msa0561510-mRNA-1
chr4_1 exon 61022985 61023044 61022985 ID=Msa0561510-mRNA-1:exon:19123;Parent=Msa0561510-mRNA-1
chr4_1 exon 61023177 61023287 61023177 ID=Msa0561510-mRNA-1:exon:19122;Parent=Msa0561510-mRNA-1
chr4_1 exon 61023405 61023479 61023405 ID=Msa0561510-mRNA-1:exon:19121;Parent=Msa0561510-mRNA-1
chr4_1 exon 61024045 61024110 61024045 ID=Msa0561510-mRNA-1:exon:19120;Parent=Msa0561510-mRNA-1
chr4_1 exon 61024216 61024576 61024216 ID=Msa0561510-mRNA-1:exon:19119;Parent=Msa0561510-mRNA-1
chr4_1 five_prime_UTR 61024423 61024576 61024423 ID=Msa0561510-mRNA-1:five_prime_utr;Parent=Msa0561510-mRNA-1
chr4_1 CDS 61024216 61024422 61024216 ID=Msa0561510-mRNA-1:cds;Parent=Msa0561510-mRNA-1
chr4_1 CDS 61024045 61024110 61024045 ID=Msa0561510-mRNA-1:cds;Parent=Msa0561510-mRNA-1
chr4_1 CDS 61023405 61023479 61023405 ID=Msa0561510-mRNA-1:cds;Parent=Msa0561510-mRNA-1
chr4_1 CDS 61023177 61023287 61023177 ID=Msa0561510-mRNA-1:cds;Parent=Msa0561510-mRNA-1
chr4_1 CDS 61022985 61023044 61022985 ID=Msa0561510-mRNA-1:cds;Parent=Msa0561510-mRNA-1
chr4_1 CDS 61022533 61022622 61022533 ID=Msa0561510-mRNA-1:cds;Parent=Msa0561510-mRNA-1
chr4_1 CDS 61022328 61022435 61022328 ID=Msa0561510-mRNA-1:cds;Parent=Msa0561510-mRNA-1
chr4_1 CDS 61021701 61021823 61021701 ID=Msa0561510-mRNA-1:cds;Parent=Msa0561510-mRNA-1
chr4_1 CDS 61021448 61021579 61021448 ID=Msa0561510-mRNA-1:cds;Parent=Msa0561510-mRNA-1
chr4_1 three_prime_UTR 61021135 61021447 61021135 ID=Msa0561510-mRNA-1:three_prime_utr;Parent=Msa0561510-mRNA-1
Gene Sequence

>Msa0561510

ATGCATTCCTTAACATGCCTAACACTTTCTTCTCCTTCTTCAATCTCATCTCTAAAGCCAAACCATAACTACAACCCTTTATTAGGTGCAACCTCAAAGCCATGTCTACTACCTTTGAAAAGAAAAACCTGTTTTACTACTAGAGCATTACTTTCATCAACCAAAGAATCTGTCCTTAAGGATTTTCGCGAACGAACAGCTCTCAAGATAATCACAGGCTTGCAGAATTTTGATAAAGACAATGTTGCCTCAGTTGTCACTGCCGCAGAAAAGGGAGGAGCAACTCACGTCGATATAGCATGTGACCCAGAGTTGGTGAAGCTAGCTATCAGCCTAACTTCTTGTCCGGCTATCTTAATCATTGAGGCAACAATTGATGATTCATCGCTGTTGCAGGTTTGTGTTTCTTCTGTAGATCCTGCAACATTTCCAGCTGCAGTTGAAGCAGGAGCACTAATGGTTGAGATTGGAAATTATGATTCATTTTATGAGAAGGGAGTGATTTTTACTCCAGAGCAGATTCTGAGTCTAACAAAAGAGACAAGGAGGATACTTCCATCTGTGGTTTTGTCTGTCACTGTTCCGCACACACTAAGCCTCCCCGATCAGGTCAAGCTTGCAGAATCACTCGAACTAGAAGGTGTAGATATTATTCAAACTGAGGGAGGAAAATGTTCCAATCCTACAAAGTCTGGTGTTCTTGGTTTGATTGAGAAGGCAACACCAACTTTAGCAGCTGCATATTCTATATCACGAGCTGTTAAGATACCAGTCATGTGTTCATCAGGGCTAAGTGCTGTCACAGCACCTATGGCTATCACTGCTGGAGCTTCTGGTGTGGGTGTGGGCTCTGCAGTTAACAAACTAAATGATGTGGTCGCCATGATTGCTGAAGTTAGAAGCATCGCTGATTCATTGAAGATATCCCTTCCGATACACACTACACATGAAGTGGAAACTCACTTCCAGTAG

Protein sequence

>Msa0561510

MHSLTCLTLSSPSSISSLKPNHNYNPLLGATSKPCLLPLKRKTCFTTRALLSSTKESVLKDFRERTALKIITGLQNFDKDNVASVVTAAEKGGATHVDIACDPELVKLAISLTSCPAILIIEATIDDSSLLQVCVSSVDPATFPAAVEAGALMVEIGNYDSFYEKGVIFTPEQILSLTKETRRILPSVVLSVTVPHTLSLPDQVKLAESLELEGVDIIQTEGGKCSNPTKSGVLGLIEKATPTLAAAYSISRAVKIPVMCSSGLSAVTAPMAITAGASGVGVGSAVNKLNDVVAMIAEVRSIADSLKISLPIHTTHEVETHFQ*