AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0567290


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0567290 MtrunA17_Chr8g0382151 95.425 153 7 0 1 153 1 153 1.09e-89 259
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0567290 AT5G65220.1 60.510 157 57 2 1 152 1 157 3.28e-56 174

Find 49 sgRNAs with CRISPR-Local

Find 250 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAATTCACTGCCTTCAAATT+AGG 0.189849 4_1:-68668183 Msa0567290:three_prime_UTR
CTCCATCTTTAGTGAAGCTT+CGG 0.343778 4_1:-68668451 Msa0567290:CDS
AGGATGAAGTGAAGTAAGAT+AGG 0.359503 4_1:-68671275 Msa0567290:five_prime_UTR
CGAAGAGGTTGTTGACCTTA+AGG 0.368840 4_1:-68670959 Msa0567290:CDS
AGAGAGATCGAGGAGGGTAT+TGG 0.373075 4_1:-68668533 Msa0567290:CDS
CCTATGTTCTTCCTGTCATA+AGG 0.377714 4_1:-68668262 Msa0567290:three_prime_UTR
GAAGAGGTTGTTGACCTTAA+GGG 0.407443 4_1:-68670958 Msa0567290:CDS
AACCTCTTCGTTGATTTGTT+CGG 0.413592 4_1:+68670972 None:intergenic
TCCATCTTTAGTGAAGCTTC+GGG 0.422468 4_1:-68668450 Msa0567290:CDS
TAACCATGTCTCTATTCTTA+CGG 0.436101 4_1:+68668215 None:intergenic
AAAATGATTACCTAATTTGA+AGG 0.439015 4_1:+68668173 None:intergenic
CAATTCAAAACCTCCTTCAA+TGG 0.450472 4_1:-68671114 Msa0567290:CDS
GCTGGAATTGTGCACGTGTT+TGG 0.452104 4_1:+68671075 None:intergenic
AGAAGCCGCTGAAGCTGAAA+AGG 0.454847 4_1:-68668411 Msa0567290:CDS
GCTGAAAAGGCTGCATGAGC+TGG 0.463787 4_1:-68668398 Msa0567290:exon
AAGAGGAGTTGCGCTCATAA+AGG 0.464581 4_1:-68671295 Msa0567290:five_prime_UTR
TCGAGGAGGGTATTGGTAAG+AGG 0.464624 4_1:-68668526 Msa0567290:CDS
TCCCGAAGCTTCACTAAAGA+TGG 0.465433 4_1:+68668449 None:intergenic
GAAGCGGTGTGTTTCGTCGC+TGG 0.470689 4_1:+68671057 None:intergenic
CTCTTCGTTGATTTGTTCGG+TGG 0.475609 4_1:+68670975 None:intergenic
TTTAGTGAAGCTTCGGGAGG+AGG 0.477310 4_1:-68668444 Msa0567290:CDS
TTCGGTCTCAGTTGTGATGA+TGG 0.497091 4_1:-68671037 Msa0567290:CDS
GCATGAGCAACTCTCCCTTA+AGG 0.500570 4_1:+68670944 None:intergenic
AAGTGAAGTAAGATAGGGTG+TGG 0.502314 4_1:-68671269 Msa0567290:five_prime_UTR
ACGCATGCGACGGAAATCAC+TGG 0.508419 4_1:+68670885 None:intergenic
GAAAGTGTTGAAGAAGAAGA+AGG 0.513832 4_1:+68671156 None:intergenic
AGAAGAAGAAGGTGAAGTAA+CGG 0.515793 4_1:+68671167 None:intergenic
GGATGAAGTGAAGTAAGATA+GGG 0.523185 4_1:-68671274 Msa0567290:five_prime_UTR
CATTACGAGCGGATTTCTGA+AGG 0.525516 4_1:+68670917 None:intergenic
AGCGACGAAACACACCGCTT+CGG 0.532669 4_1:-68671055 Msa0567290:CDS
TCGCTTGCTTACTGTAAAGC+GGG 0.534202 4_1:-68668558 Msa0567290:CDS
ACGTAGACGAATGCCATTGA+AGG 0.534298 4_1:+68671101 None:intergenic
TTTCCGTCGCATGCGTAAGA+CGG 0.562303 4_1:-68670878 Msa0567290:intron
CTCGCTTGCTTACTGTAAAG+CGG 0.564676 4_1:-68668559 Msa0567290:CDS
AGCTTCACTAAAGATGGAGG+TGG 0.573712 4_1:+68668455 None:intergenic
CCTTATGACAGGAAGAACAT+AGG 0.601321 4_1:+68668262 None:intergenic
TAGACGAATGCCATTGAAGG+AGG 0.601615 4_1:+68671104 None:intergenic
ATCTTTAGTGAAGCTTCGGG+AGG 0.606878 4_1:-68668447 Msa0567290:CDS
CGGGAAAGAGAGATCGAGGA+GGG 0.618037 4_1:-68668539 Msa0567290:CDS
CGAAGCTTCACTAAAGATGG+AGG 0.634671 4_1:+68668452 None:intergenic
CACCGAACAAATCAACGAAG+AGG 0.638523 4_1:-68670974 Msa0567290:CDS
AAAGCGGGAAAGAGAGATCG+AGG 0.640382 4_1:-68668543 Msa0567290:CDS
AGATAAAACATAAGAGAGCG+CGG 0.644926 4_1:-68671210 Msa0567290:five_prime_UTR
ATACCGTCTTACGCATGCGA+CGG 0.651580 4_1:+68670875 None:intergenic
GGACTTAAACTCATTACGAG+CGG 0.659914 4_1:+68670906 None:intergenic
GCGGGAAAGAGAGATCGAGG+AGG 0.693334 4_1:-68668540 Msa0567290:CDS
CATCACAACTGAGACCGAAG+CGG 0.693580 4_1:+68671041 None:intergenic
TAACCGTAAGAATAGAGACA+TGG 0.704669 4_1:-68668218 Msa0567290:three_prime_UTR
AAGAAGGTGAAGTAACGGAG+AGG 0.716426 4_1:+68671172 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAAAACTAAAAATAAATG+GGG + chr4_1:68670760-68670779 None:intergenic 10.0%
!!! ATTTGCTTAATTAAATTTTG+AGG - chr4_1:68668652-68668671 Msa0567290:intron 15.0%
!! AAAAAAGCAATATAATGAAA+AGG + chr4_1:68669979-68669998 None:intergenic 15.0%
!! TTAAAACTAAAAATAAATGG+GGG + chr4_1:68670759-68670778 None:intergenic 15.0%
!!! ATCTGAAGTTATTATTATTA+GGG + chr4_1:68670787-68670806 None:intergenic 15.0%
!! TTAATACATTAGTAGAGTTA+GGG - chr4_1:68668725-68668744 Msa0567290:intron 20.0%
!! ACAATATTCAAAATTGTCAA+GGG - chr4_1:68669015-68669034 Msa0567290:intron 20.0%
!!! TCTTAAGTTTGAATCTTTTA+TGG - chr4_1:68669508-68669527 Msa0567290:intron 20.0%
!! ATAATCTAATCCAATGTAAA+CGG - chr4_1:68669642-68669661 Msa0567290:intron 20.0%
!!! TATCTTTTACTTTAGTTGTT+TGG - chr4_1:68669815-68669834 Msa0567290:intron 20.0%
!!! TCAACAATTGAATTTTATTG+TGG + chr4_1:68670059-68670078 None:intergenic 20.0%
!! ACAATAAAATTCAATTGTTG+AGG - chr4_1:68670058-68670077 Msa0567290:intron 20.0%
!! ATCAGAACTGAAATTTAAAT+TGG - chr4_1:68670140-68670159 Msa0567290:intron 20.0%
!!! CTAATTTTTTTTTTCCGTTT+CGG + chr4_1:68670251-68670270 None:intergenic 20.0%
!!! TCAATTCAATTTTTATTGGT+GGG + chr4_1:68670596-68670615 None:intergenic 20.0%
!!! CATCTGAAGTTATTATTATT+AGG + chr4_1:68670788-68670807 None:intergenic 20.0%
!!! AGTCATTGTTTTTAATGTTT+TGG - chr4_1:68671113-68671132 Msa0567290:CDS 20.0%
!! AAAATGATTACCTAATTTGA+AGG + chr4_1:68671271-68671290 None:intergenic 20.0%
!!! GTTTTGAATTGTAATGGTTT+TGG + chr4_1:68668318-68668337 None:intergenic 25.0%
! CTCTACTAATGTATTAAGAT+TGG + chr4_1:68668722-68668741 None:intergenic 25.0%
! CTTAATACATTAGTAGAGTT+AGG - chr4_1:68668724-68668743 Msa0567290:intron 25.0%
! TAATACATTAGTAGAGTTAG+GGG - chr4_1:68668726-68668745 Msa0567290:intron 25.0%
! TGTGAAATTAGGAATGAATA+GGG - chr4_1:68668759-68668778 Msa0567290:intron 25.0%
! TTGTAATTGTCATTGTTCTA+TGG - chr4_1:68668845-68668864 Msa0567290:intron 25.0%
! ATTGTTCTATGGTTATGTTA+GGG - chr4_1:68668856-68668875 Msa0567290:intron 25.0%
! CACAATATTCAAAATTGTCA+AGG - chr4_1:68669014-68669033 Msa0567290:intron 25.0%
! CAATATTCAAAATTGTCAAG+GGG - chr4_1:68669016-68669035 Msa0567290:intron 25.0%
! GAAATATTGCTATGTTAGAA+TGG - chr4_1:68669044-68669063 Msa0567290:intron 25.0%
! ACACCAAAAATAATGCAAAT+GGG + chr4_1:68669110-68669129 None:intergenic 25.0%
! TGTCTATTATACCAAACTTA+GGG - chr4_1:68669127-68669146 Msa0567290:intron 25.0%
!! TTCAAATTTTACCCTAAGTT+TGG + chr4_1:68669141-68669160 None:intergenic 25.0%
! AAACTTAGGGTAAAATTTGA+AGG - chr4_1:68669140-68669159 Msa0567290:intron 25.0%
! GAAATGAACATTGAAATGAA+AGG - chr4_1:68669190-68669209 Msa0567290:intron 25.0%
!! TATTAGCACTTGTTAACAAA+TGG + chr4_1:68669591-68669610 None:intergenic 25.0%
! ATACAAATGAGTGTAAGAAT+AGG + chr4_1:68669893-68669912 None:intergenic 25.0%
! AACATCCATGAAAATAGAAA+AGG + chr4_1:68670084-68670103 None:intergenic 25.0%
! CGAAACGGAAAAAAAAAATT+AGG - chr4_1:68670249-68670268 Msa0567290:intron 25.0%
! AACTCTGATAAAATGATGAT+GGG + chr4_1:68670568-68670587 None:intergenic 25.0%
!! CTCAATTCAATTTTTATTGG+TGG + chr4_1:68670597-68670616 None:intergenic 25.0%
! CACCAATAAAAATTGAATTG+AGG - chr4_1:68670595-68670614 Msa0567290:intron 25.0%
!! CTCCTCAATTCAATTTTTAT+TGG + chr4_1:68670600-68670619 None:intergenic 25.0%
! AAAAATTGAATTGAGGAGAA+TGG - chr4_1:68670602-68670621 Msa0567290:intron 25.0%
! AAAATTGAATTGAGGAGAAT+GGG - chr4_1:68670603-68670622 Msa0567290:intron 25.0%
!! TTTAGAATGTTTAGATTCCA+TGG - chr4_1:68670669-68670688 Msa0567290:intron 25.0%
! AAATGCACACAATAGAAAAA+GGG - chr4_1:68670702-68670721 Msa0567290:intron 25.0%
!!! CATTGTTTTTAATGTTTTGG+TGG - chr4_1:68671116-68671135 Msa0567290:CDS 25.0%
!!! TTGTAATGGTTTTGGAAGAA+AGG + chr4_1:68668310-68668329 None:intergenic 30.0%
!!! AAGGAGGTTTTGAATTGTAA+TGG + chr4_1:68668324-68668343 None:intergenic 30.0%
CTGTGAAATTAGGAATGAAT+AGG - chr4_1:68668758-68668777 Msa0567290:intron 30.0%
CATTGTTCTATGGTTATGTT+AGG - chr4_1:68668855-68668874 Msa0567290:intron 30.0%
!!! AGTCTTTGGTTTTGTGTATT+TGG + chr4_1:68668943-68668962 None:intergenic 30.0%
GTGTGTAATATGTAAGTCAT+AGG + chr4_1:68668997-68669016 None:intergenic 30.0%
TTGCTATGTTAGAATGGAAA+TGG - chr4_1:68669050-68669069 Msa0567290:intron 30.0%
! CATCCCATTTGCATTATTTT+TGG - chr4_1:68669104-68669123 Msa0567290:intron 30.0%
GACACCAAAAATAATGCAAA+TGG + chr4_1:68669111-68669130 None:intergenic 30.0%
GTGTCTATTATACCAAACTT+AGG - chr4_1:68669126-68669145 Msa0567290:intron 30.0%
TAGTTGTTACTCATGTATTG+CGG - chr4_1:68669275-68669294 Msa0567290:intron 30.0%
!!! ACTTTTCAGGTATGGTATTT+CGG + chr4_1:68669349-68669368 None:intergenic 30.0%
ATTGAAATTGAACTGAAACC+AGG + chr4_1:68669423-68669442 None:intergenic 30.0%
ATTTCAATCAACCAATACGA+TGG - chr4_1:68669435-68669454 Msa0567290:intron 30.0%
ACATAGATTAAATCCATTGC+CGG - chr4_1:68669484-68669503 Msa0567290:intron 30.0%
AAAGATTCAAACTTAAGACC+CGG + chr4_1:68669506-68669525 None:intergenic 30.0%
! TCAGTTATTTCCGTTTACAT+TGG + chr4_1:68669655-68669674 None:intergenic 30.0%
AAATAACTGAACTGAAAACC+AGG - chr4_1:68669665-68669684 Msa0567290:intron 30.0%
! TTTTATTGTCCTCTGTTTTG+GGG + chr4_1:68669701-68669720 None:intergenic 30.0%
!! GTTTTATTGTCCTCTGTTTT+GGG + chr4_1:68669702-68669721 None:intergenic 30.0%
!!! AGTTTTATTGTCCTCTGTTT+TGG + chr4_1:68669703-68669722 None:intergenic 30.0%
! CTTCAGTTTTCTTTCTTCTT+TGG + chr4_1:68669727-68669746 None:intergenic 30.0%
AAGAAGAAAGAAAACTGAAG+AGG - chr4_1:68669727-68669746 Msa0567290:intron 30.0%
ACTGAAACAAAGAATAAAGG+TGG + chr4_1:68669956-68669975 None:intergenic 30.0%
AGGACTGAAACAAAGAATAA+AGG + chr4_1:68669959-68669978 None:intergenic 30.0%
AGGAGATTAATCTATTATGC+TGG + chr4_1:68670432-68670451 None:intergenic 30.0%
ATAGTAAAGCAAACTGAAGT+AGG + chr4_1:68670491-68670510 None:intergenic 30.0%
GAACTCTGATAAAATGATGA+TGG + chr4_1:68670569-68670588 None:intergenic 30.0%
ATGTTTAGATTCCATGGTAA+AGG - chr4_1:68670675-68670694 Msa0567290:intron 30.0%
GAAATGCACACAATAGAAAA+AGG - chr4_1:68670701-68670720 Msa0567290:intron 30.0%
AATGCACACAATAGAAAAAG+GGG - chr4_1:68670703-68670722 Msa0567290:intron 30.0%
AAACTAAAAATAAATGGGGG+TGG + chr4_1:68670756-68670775 None:intergenic 30.0%
!!! CCATTTTTTATCAAGCTTTC+TGG + chr4_1:68670945-68670964 None:intergenic 30.0%
CCAGAAAGCTTGATAAAAAA+TGG - chr4_1:68670942-68670961 Msa0567290:CDS 30.0%
GACATAAAAAACCTTATGAC+AGG + chr4_1:68671193-68671212 None:intergenic 30.0%
TAACCATGTCTCTATTCTTA+CGG + chr4_1:68671229-68671248 None:intergenic 30.0%
AGGATGAAGTGAAGTAAGAT+AGG - chr4_1:68668166-68668185 Msa0567290:three_prime_UTR 35.0%
GGATGAAGTGAAGTAAGATA+GGG - chr4_1:68668167-68668186 Msa0567290:three_prime_UTR 35.0%
AGATAAAACATAAGAGAGCG+CGG - chr4_1:68668231-68668250 Msa0567290:three_prime_UTR 35.0%
AGAAGAAGAAGGTGAAGTAA+CGG + chr4_1:68668277-68668296 None:intergenic 35.0%
!! GAAAGTGTTGAAGAAGAAGA+AGG + chr4_1:68668288-68668307 None:intergenic 35.0%
CAATTCAAAACCTCCTTCAA+TGG - chr4_1:68668327-68668346 Msa0567290:three_prime_UTR 35.0%
!! AACCTCTTCGTTGATTTGTT+CGG + chr4_1:68668472-68668491 None:intergenic 35.0%
GAATGAGAGTCTGTGAAATT+AGG - chr4_1:68668748-68668767 Msa0567290:intron 35.0%
ACAAAACCAAAGACTCACTA+GGG - chr4_1:68668948-68668967 Msa0567290:intron 35.0%
TAGAATGGAAATGGAGAGAA+AGG - chr4_1:68669059-68669078 Msa0567290:intron 35.0%
TGCAAATGGGATGTAGATAT+AGG + chr4_1:68669097-68669116 None:intergenic 35.0%
AACATTGAAATGAAAGGCCA+AGG - chr4_1:68669196-68669215 Msa0567290:intron 35.0%
ACATTGAAATGAAAGGCCAA+GGG - chr4_1:68669197-68669216 Msa0567290:intron 35.0%
GTTAACGAATTTGAATCCCT+TGG + chr4_1:68669216-68669235 None:intergenic 35.0%
!! ATTTCAGGTATGGTGTTTTC+TGG + chr4_1:68669316-68669335 None:intergenic 35.0%
AGAAAACACCATACCTGAAA+TGG - chr4_1:68669315-68669334 Msa0567290:intron 35.0%
GAAAACACCATACCTGAAAT+GGG - chr4_1:68669316-68669335 Msa0567290:intron 35.0%
AAAACACCATACCTGAAATG+GGG - chr4_1:68669317-68669336 Msa0567290:intron 35.0%
!!! CTTTTCAGGTATGGTATTTC+GGG + chr4_1:68669348-68669367 None:intergenic 35.0%
GAAATACCATACCTGAAAAG+TGG - chr4_1:68669348-68669367 Msa0567290:intron 35.0%
CATAGATTAAATCCATTGCC+GGG - chr4_1:68669485-68669504 Msa0567290:intron 35.0%
!! GTCCTCATTCTTTAGAGTTT+AGG - chr4_1:68669537-68669556 Msa0567290:intron 35.0%
! GACCTAAACTCTAAAGAATG+AGG + chr4_1:68669542-68669561 None:intergenic 35.0%
!! CTTTAGAGTTTAGGTCTTTG+AGG - chr4_1:68669546-68669565 Msa0567290:intron 35.0%
TGCTAATAGCTAACATAGCT+TGG - chr4_1:68669603-68669622 Msa0567290:intron 35.0%
GCTAATAGCTAACATAGCTT+GGG - chr4_1:68669604-68669623 Msa0567290:intron 35.0%
CTAATAGCTAACATAGCTTG+GGG - chr4_1:68669605-68669624 Msa0567290:intron 35.0%
! AAACTGAAGAGGTCAAGTTT+TGG - chr4_1:68669738-68669757 Msa0567290:intron 35.0%
! TGCAGCTAGTTTATGAAGAA+AGG + chr4_1:68669794-68669813 None:intergenic 35.0%
TGAGTAAATCGTGACTTTGA+TGG + chr4_1:68670004-68670023 None:intergenic 35.0%
! TGAGGCCTTTTCTATTTTCA+TGG - chr4_1:68670076-68670095 Msa0567290:intron 35.0%
ACACTTGTCTACTGTTATCT+GGG + chr4_1:68670219-68670238 None:intergenic 35.0%
TACACTTGTCTACTGTTATC+TGG + chr4_1:68670220-68670239 None:intergenic 35.0%
AGATAACAGTAGACAAGTGT+AGG - chr4_1:68670219-68670238 Msa0567290:intron 35.0%
GATAACAGTAGACAAGTGTA+GGG - chr4_1:68670220-68670239 Msa0567290:intron 35.0%
AAATCACTTGAGCATTTGTG+GGG + chr4_1:68670304-68670323 None:intergenic 35.0%
GAAATCACTTGAGCATTTGT+GGG + chr4_1:68670305-68670324 None:intergenic 35.0%
ATGGAGACGAACATTAATGT+GGG + chr4_1:68670352-68670371 None:intergenic 35.0%
AATGGAGACGAACATTAATG+TGG + chr4_1:68670353-68670372 None:intergenic 35.0%
ACATTAATGTTCGTCTCCAT+TGG - chr4_1:68670352-68670371 Msa0567290:intron 35.0%
TGTGTTGCATAAAGTGGAAA+AGG + chr4_1:68670521-68670540 None:intergenic 35.0%
TGCATTTCTTTCCTTTACCA+TGG + chr4_1:68670689-68670708 None:intergenic 35.0%
TAGAAAGCTTTACCAACAAG+CGG - chr4_1:68670812-68670831 Msa0567290:intron 35.0%
GTAATCATTCACCCAAAAGA+AGG + chr4_1:68670841-68670860 None:intergenic 35.0%
TAACCGTAAGAATAGAGACA+TGG - chr4_1:68671223-68671242 Msa0567290:five_prime_UTR 35.0%
CAATTCACTGCCTTCAAATT+AGG - chr4_1:68671258-68671277 Msa0567290:five_prime_UTR 35.0%
AAGTGAAGTAAGATAGGGTG+TGG - chr4_1:68668172-68668191 Msa0567290:three_prime_UTR 40.0%
! GATGATGGCAAAAAGAGAAG+AGG - chr4_1:68668419-68668438 Msa0567290:CDS 40.0%
GAAGAGGTTGTTGACCTTAA+GGG - chr4_1:68668483-68668502 Msa0567290:CDS 40.0%
GGACTTAAACTCATTACGAG+CGG + chr4_1:68668538-68668557 None:intergenic 40.0%
GGTTATGTTAGGGAAACAAC+TGG - chr4_1:68668866-68668885 Msa0567290:intron 40.0%
AGTGCAAGAGACTTGTGTTT+AGG - chr4_1:68668907-68668926 Msa0567290:intron 40.0%
GTGCAAGAGACTTGTGTTTA+GGG - chr4_1:68668908-68668927 Msa0567290:intron 40.0%
CACAAAACCAAAGACTCACT+AGG - chr4_1:68668947-68668966 Msa0567290:intron 40.0%
TGGAAATGGAGAGAAAGGAA+AGG - chr4_1:68669064-68669083 Msa0567290:intron 40.0%
!! GGGTAAAATTTGAAGGCATC+AGG - chr4_1:68669147-68669166 Msa0567290:intron 40.0%
!!! GAAGGCATCAGGATTTTATC+TGG - chr4_1:68669158-68669177 Msa0567290:intron 40.0%
ATACCTGAAAAGTGGAGAGT+GGG - chr4_1:68669356-68669375 Msa0567290:intron 40.0%
ATCAGTTGCATGAGTGGAAA+AGG + chr4_1:68670112-68670131 None:intergenic 40.0%
CAGAATATCAGTTGCATGAG+TGG + chr4_1:68670118-68670137 None:intergenic 40.0%
!! TCTGGGCTAGAGTTTTCTTT+TGG + chr4_1:68670202-68670221 None:intergenic 40.0%
GGAAATCACTTGAGCATTTG+TGG + chr4_1:68670306-68670325 None:intergenic 40.0%
AGACGAACATTAATGTGGGA+AGG + chr4_1:68670348-68670367 None:intergenic 40.0%
AAACAGAACACGTGGCAATA+GGG + chr4_1:68670401-68670420 None:intergenic 40.0%
AAAGAAGCAGTGCATTAGCT+AGG - chr4_1:68670645-68670664 Msa0567290:intron 40.0%
GAATCACAATATCACCAAGC+TGG - chr4_1:68670729-68670748 Msa0567290:intron 40.0%
! GCTTGTTGGTAAAGCTTTCT+AGG + chr4_1:68670813-68670832 None:intergenic 40.0%
AAAAGAAGGATACCGCTTGT+TGG + chr4_1:68670827-68670846 None:intergenic 40.0%
! AACAAGCGGTATCCTTCTTT+TGG - chr4_1:68670826-68670845 Msa0567290:intron 40.0%
! ACAAGCGGTATCCTTCTTTT+GGG - chr4_1:68670827-68670846 Msa0567290:intron 40.0%
CTCCATCTTTAGTGAAGCTT+CGG - chr4_1:68670990-68671009 Msa0567290:CDS 40.0%
TCCATCTTTAGTGAAGCTTC+GGG - chr4_1:68670991-68671010 Msa0567290:CDS 40.0%
CCTTATGACAGGAAGAACAT+AGG + chr4_1:68671182-68671201 None:intergenic 40.0%
CCTATGTTCTTCCTGTCATA+AGG - chr4_1:68671179-68671198 Msa0567290:CDS 40.0%
AAGAGGAGTTGCGCTCATAA+AGG - chr4_1:68668146-68668165 Msa0567290:three_prime_UTR 45.0%
! AAGAAGGTGAAGTAACGGAG+AGG + chr4_1:68668272-68668291 None:intergenic 45.0%
TAGACGAATGCCATTGAAGG+AGG + chr4_1:68668340-68668359 None:intergenic 45.0%
ACGTAGACGAATGCCATTGA+AGG + chr4_1:68668343-68668362 None:intergenic 45.0%
TTCGGTCTCAGTTGTGATGA+TGG - chr4_1:68668404-68668423 Msa0567290:CDS 45.0%
!! CTCTTCGTTGATTTGTTCGG+TGG + chr4_1:68668469-68668488 None:intergenic 45.0%
CACCGAACAAATCAACGAAG+AGG - chr4_1:68668467-68668486 Msa0567290:CDS 45.0%
CGAAGAGGTTGTTGACCTTA+AGG - chr4_1:68668482-68668501 Msa0567290:CDS 45.0%
! CATTACGAGCGGATTTCTGA+AGG + chr4_1:68668527-68668546 None:intergenic 45.0%
! GGAATGAATAGGGTGCTAGT+AGG - chr4_1:68668769-68668788 Msa0567290:intron 45.0%
! ACAACTGGCTTCTTATTGCC+TGG - chr4_1:68668881-68668900 Msa0567290:intron 45.0%
AAACCAAAGACTCACTAGGG+TGG - chr4_1:68668951-68668970 Msa0567290:intron 45.0%
AACCAAAGACTCACTAGGGT+GGG - chr4_1:68668952-68668971 Msa0567290:intron 45.0%
!!! CACTCTCCACTTTTCAGGTA+TGG + chr4_1:68669357-68669376 None:intergenic 45.0%
CATACCTGAAAAGTGGAGAG+TGG - chr4_1:68669355-68669374 Msa0567290:intron 45.0%
TACCTGAAAAGTGGAGAGTG+GGG - chr4_1:68669357-68669376 Msa0567290:intron 45.0%
TCCTCCAAGCCATCTTACAA+CGG + chr4_1:68669389-68669408 None:intergenic 45.0%
GAGTCTACAAGCCATCGTAT+TGG + chr4_1:68669449-68669468 None:intergenic 45.0%
TCAAACTTAAGACCCGGCAA+TGG + chr4_1:68669500-68669519 None:intergenic 45.0%
!!! TCCTCTGTTTTGGGGTTCTT+CGG + chr4_1:68669693-68669712 None:intergenic 45.0%
AATGTGACCATGCTCACATC+AGG - chr4_1:68669847-68669866 Msa0567290:intron 45.0%
AGACATTCCTGATGTGAGCA+TGG + chr4_1:68669857-68669876 None:intergenic 45.0%
AGTGTAGGGATACACCGAAA+CGG - chr4_1:68670234-68670253 Msa0567290:intron 45.0%
GTGGGGTGACTAATAACACA+GGG + chr4_1:68670287-68670306 None:intergenic 45.0%
TGTGGGGTGACTAATAACAC+AGG + chr4_1:68670288-68670307 None:intergenic 45.0%
! GGATAGATGTGTGGTGGAAT+AGG + chr4_1:68670327-68670346 None:intergenic 45.0%
ATGTGGGAAGGATAGATGTG+TGG + chr4_1:68670336-68670355 None:intergenic 45.0%
AACAGAACACGTGGCAATAG+GGG + chr4_1:68670400-68670419 None:intergenic 45.0%
CAAACAGAACACGTGGCAAT+AGG + chr4_1:68670402-68670421 None:intergenic 45.0%
CTATTGCCACGTGTTCTGTT+TGG - chr4_1:68670400-68670419 Msa0567290:intron 45.0%
ATCCTACCAAACAGAACACG+TGG + chr4_1:68670409-68670428 None:intergenic 45.0%
! TGTCAGTACTGAAGGACTGA+AGG + chr4_1:68670452-68670471 None:intergenic 45.0%
! CAGAAGTCTGTCAGTACTGA+AGG + chr4_1:68670460-68670479 None:intergenic 45.0%
CATAAAGTGGAAAAGGAGCG+CGG + chr4_1:68670514-68670533 None:intergenic 45.0%
TTTATGCAACACACCCGCAT+GGG - chr4_1:68670528-68670547 Msa0567290:intron 45.0%
AATTGAGGAGAATGGGCACT+AGG - chr4_1:68670610-68670629 Msa0567290:intron 45.0%
ATTGAGGAGAATGGGCACTA+GGG - chr4_1:68670611-68670630 Msa0567290:intron 45.0%
CTCGCTTGCTTACTGTAAAG+CGG - chr4_1:68670882-68670901 Msa0567290:CDS 45.0%
TCGCTTGCTTACTGTAAAGC+GGG - chr4_1:68670883-68670902 Msa0567290:CDS 45.0%
AGCTTCACTAAAGATGGAGG+TGG + chr4_1:68670989-68671008 None:intergenic 45.0%
CGAAGCTTCACTAAAGATGG+AGG + chr4_1:68670992-68671011 None:intergenic 45.0%
TCCCGAAGCTTCACTAAAGA+TGG + chr4_1:68670995-68671014 None:intergenic 45.0%
ATCTTTAGTGAAGCTTCGGG+AGG - chr4_1:68670994-68671013 Msa0567290:CDS 45.0%
!! TATTAAAACTAAAAATAAAT+GGG + chr4_1:68670761-68670780 None:intergenic 5.0%
!! ATATTAAAACTAAAAATAAA+TGG + chr4_1:68670762-68670781 None:intergenic 5.0%
GCTGGAATTGTGCACGTGTT+TGG + chr4_1:68668369-68668388 None:intergenic 50.0%
CATCACAACTGAGACCGAAG+CGG + chr4_1:68668403-68668422 None:intergenic 50.0%
GCATGAGCAACTCTCCCTTA+AGG + chr4_1:68668500-68668519 None:intergenic 50.0%
TTTCCGTCGCATGCGTAAGA+CGG - chr4_1:68668563-68668582 Msa0567290:CDS 50.0%
ATACCGTCTTACGCATGCGA+CGG + chr4_1:68668569-68668588 None:intergenic 50.0%
! CAAGTCTCTTGCACTGATCC+AGG + chr4_1:68668902-68668921 None:intergenic 50.0%
ACCAAAGACTCACTAGGGTG+GGG - chr4_1:68668953-68668972 Msa0567290:intron 50.0%
GTATTGCGGCGCATAGCAAT+TGG - chr4_1:68669289-68669308 Msa0567290:intron 50.0%
! GACTCTCCCCATTTCAGGTA+TGG + chr4_1:68669326-68669345 None:intergenic 50.0%
TGGAGGAGAAGTCATTCTCC+TGG - chr4_1:68669402-68669421 Msa0567290:intron 50.0%
!!! TTTTGGGGTTCTTCGGTTCC+TGG + chr4_1:68669686-68669705 None:intergenic 50.0%
ACCGAAGAACCCCAAAACAG+AGG - chr4_1:68669689-68669708 Msa0567290:intron 50.0%
TGGGAAGGATAGATGTGTGG+TGG + chr4_1:68670333-68670352 None:intergenic 50.0%
ATGGGAGATGCAGGAACCAA+TGG + chr4_1:68670371-68670390 None:intergenic 50.0%
TGCCACGTGTTCTGTTTGGT+AGG - chr4_1:68670404-68670423 Msa0567290:intron 50.0%
TGCGGGTGTGTTGCATAAAG+TGG + chr4_1:68670527-68670546 None:intergenic 50.0%
CTTTATGCAACACACCCGCA+TGG - chr4_1:68670527-68670546 Msa0567290:intron 50.0%
ATGGGCACTAGGGATTCAGT+AGG - chr4_1:68670621-68670640 Msa0567290:intron 50.0%
AAAGCGGGAAAGAGAGATCG+AGG - chr4_1:68670898-68670917 Msa0567290:CDS 50.0%
! AGAGAGATCGAGGAGGGTAT+TGG - chr4_1:68670908-68670927 Msa0567290:CDS 50.0%
!! TCGAGGAGGGTATTGGTAAG+AGG - chr4_1:68670915-68670934 Msa0567290:CDS 50.0%
TTTAGTGAAGCTTCGGGAGG+AGG - chr4_1:68670997-68671016 Msa0567290:CDS 50.0%
AGAAGCCGCTGAAGCTGAAA+AGG - chr4_1:68671030-68671049 Msa0567290:CDS 50.0%
! TGCAGCCTTTTCAGCTTCAG+CGG + chr4_1:68671038-68671057 None:intergenic 50.0%
AGCGACGAAACACACCGCTT+CGG - chr4_1:68668386-68668405 Msa0567290:exon 55.0%
ACGCATGCGACGGAAATCAC+TGG + chr4_1:68668559-68668578 None:intergenic 55.0%
TCCCCACCCTAGTGAGTCTT+TGG + chr4_1:68668957-68668976 None:intergenic 55.0%
TTCGGGACTCTCCCCATTTC+AGG + chr4_1:68669331-68669350 None:intergenic 55.0%
!! CACCCCACTCTCCACTTTTC+AGG + chr4_1:68669362-68669381 None:intergenic 55.0%
CTGAAAAGTGGAGAGTGGGG+TGG - chr4_1:68669360-68669379 Msa0567290:intron 55.0%
AAAAGTGGAGAGTGGGGTGG+TGG - chr4_1:68669363-68669382 Msa0567290:intron 55.0%
GTGGCCGTTGTAAGATGGCT+TGG - chr4_1:68669382-68669401 Msa0567290:intron 55.0%
! GCCGTTGTAAGATGGCTTGG+AGG - chr4_1:68669385-68669404 Msa0567290:intron 55.0%
TGGCAATAGGGGAGGGCAAT+GGG + chr4_1:68670389-68670408 None:intergenic 55.0%
GAACACGTGGCAATAGGGGA+GGG + chr4_1:68670396-68670415 None:intergenic 55.0%
AGAACACGTGGCAATAGGGG+AGG + chr4_1:68670397-68670416 None:intergenic 55.0%
TAAATGGGGGTGGACCAGCT+TGG + chr4_1:68670746-68670765 None:intergenic 55.0%
CGGGAAAGAGAGATCGAGGA+GGG - chr4_1:68670902-68670921 Msa0567290:CDS 55.0%
GCTGAAAAGGCTGCATGAGC+TGG - chr4_1:68671043-68671062 Msa0567290:CDS 55.0%
GAAGCGGTGTGTTTCGTCGC+TGG + chr4_1:68668387-68668406 None:intergenic 60.0%
! GGGTGGTGGCCGTTGTAAGA+TGG - chr4_1:68669377-68669396 Msa0567290:intron 60.0%
GTGGCAATAGGGGAGGGCAA+TGG + chr4_1:68670390-68670409 None:intergenic 60.0%
ATGCAACACACCCGCATGGG+AGG - chr4_1:68670531-68670550 Msa0567290:intron 60.0%
GCGGGAAAGAGAGATCGAGG+AGG - chr4_1:68670901-68670920 Msa0567290:CDS 60.0%
GGGAGGGCAATGGGAGATGC+AGG + chr4_1:68670380-68670399 None:intergenic 65.0%
CCGTCATGAGCCTCCCATGC+GGG + chr4_1:68670544-68670563 None:intergenic 65.0%
CCCGCATGGGAGGCTCATGA+CGG - chr4_1:68670541-68670560 Msa0567290:intron 65.0%
CCCGTCATGAGCCTCCCATG+CGG + chr4_1:68670545-68670564 None:intergenic 65.0%
CCGCATGGGAGGCTCATGAC+GGG - chr4_1:68670542-68670561 Msa0567290:intron 65.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 68668141 68671322 68668141 ID=Msa0567290;Name=Msa0567290
chr4_1 mRNA 68668141 68671322 68668141 ID=Msa0567290-mRNA-1;Parent=Msa0567290;Name=Msa0567290-mRNA-1;_AED=0.01;_eAED=0.01;_QI=120|1|1|1|1|1|2|262|168
chr4_1 exon 68668141 68668585 68668141 ID=Msa0567290-mRNA-1:exon:22675;Parent=Msa0567290-mRNA-1
chr4_1 exon 68670879 68671322 68670879 ID=Msa0567290-mRNA-1:exon:22674;Parent=Msa0567290-mRNA-1
chr4_1 five_prime_UTR 68671203 68671322 68671203 ID=Msa0567290-mRNA-1:five_prime_utr;Parent=Msa0567290-mRNA-1
chr4_1 CDS 68670879 68671202 68670879 ID=Msa0567290-mRNA-1:cds;Parent=Msa0567290-mRNA-1
chr4_1 CDS 68668403 68668585 68668403 ID=Msa0567290-mRNA-1:cds;Parent=Msa0567290-mRNA-1
chr4_1 three_prime_UTR 68668141 68668402 68668141 ID=Msa0567290-mRNA-1:three_prime_utr;Parent=Msa0567290-mRNA-1
Gene Sequence

>Msa0567290

ATGTTGAACCTCTCCGTTACTTCACCTTCTTCTTCTTCAACACTTTCCTTTCTTCCAAAACCATTACAATTCAAAACCTCCTTCAATGGCATTCGTCTACGTCAACCAAACACGTGCACAATTCCAGCGACGAAACACACCGCTTCGGTCTCAGTTGTGATGATGGCAAAAAGAGAAGAGGAATTGAAGCAAATTAGAACTAAAACCACCGAACAAATCAACGAAGAGGTTGTTGACCTTAAGGGAGAGTTGCTCATGCTTCGCCTTCAGAAATCCGCTCGTAATGAGTTTAAGTCCAGTGATTTCCGTCGCATGCGTAAGACGATTGCTCGCTTGCTTACTGTAAAGCGGGAAAGAGAGATCGAGGAGGGTATTGGTAAGAGGTTGTCCAGAAAGCTTGATAAAAAATGGAAGAAAAGCATTGTTGTAAAACCACCTCCATCTTTAGTGAAGCTTCGGGAGGAGGAAGCAGCTGCAGAAGCCGCTGAAGCTGAAAAGGCTGCATGA

Protein sequence

>Msa0567290

MLNLSVTSPSSSSTLSFLPKPLQFKTSFNGIRLRQPNTCTIPATKHTASVSVVMMAKREEELKQIRTKTTEQINEEVVDLKGELLMLRLQKSARNEFKSSDFRRMRKTIARLLTVKREREIEEGIGKRLSRKLDKKWKKSIVVKPPPSLVKLREEEAAAEAAEAEKAA*