AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1325650


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1325650 MtrunA17_Chr8g0360251 93.143 175 10 1 1 175 1 173 2.55e-107 304
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1325650 AT3G15190.1 76.106 113 25 1 59 169 75 187 7.81e-56 175

Find 65 sgRNAs with CRISPR-Local

Find 253 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACATGCCTCCTTAATCTTAA+TGG 0.170350 8_4:+37984511 Msa1325650:three_prime_UTR
CTCTACTGCCTTCTTTCTTC+TGG 0.196704 8_4:-37984257 None:intergenic
CTCACTTTGGTACATATAAA+AGG 0.221922 8_4:-37984327 None:intergenic
ATGGCGGAATCAACTTTCTT+TGG 0.245038 8_4:-37983004 None:intergenic
GGCTCAAGAGGGAGTGTTTA+TGG 0.254360 8_4:-37984603 None:intergenic
CTCTAGATTGGGAAATGTTT+CGG 0.285145 8_4:-37982910 None:intergenic
TTGAATTTGATGATGAAGTT+AGG 0.285667 8_4:-37982865 None:intergenic
TCTAGATTGGGAAATGTTTC+GGG 0.288515 8_4:-37982909 None:intergenic
AAGTACTGCCATTAAGATTA+AGG 0.297689 8_4:-37984519 None:intergenic
AATACAGTTAAGGGGTAGTA+TGG 0.316694 8_4:+37982673 Msa1325650:five_prime_UTR
TCATCATCAAATTCAAATTC+CGG 0.319595 8_4:+37982872 Msa1325650:CDS
TCTCTGTCTTAAATTCAAAT+TGG 0.329349 8_4:+37984397 Msa1325650:three_prime_UTR
TTAGAGTTACGGTACCTTCT+TGG 0.334810 8_4:-37983098 None:intergenic
CTTATCCCTTCAATTTCAAT+TGG 0.340771 8_4:-37982749 None:intergenic
ATGAGGAGATTATGAAATAA+AGG 0.345001 8_4:-37982726 None:intergenic
TGGAAAAGAAATACAGTTAA+GGG 0.369259 8_4:+37982664 None:intergenic
TTGGAAAAGAAATACAGTTA+AGG 0.384353 8_4:+37982663 None:intergenic
CTTGGTACGGGTTCTAATCT+CGG 0.388971 8_4:-37983080 None:intergenic
CGCCATTAAGAGAGCTCGTC+AGG 0.398567 8_4:+37983021 Msa1325650:CDS
GCCTCAATTGAGAAGATGAT+TGG 0.400874 8_4:+37984151 Msa1325650:CDS
TGAATTTGATGATGAAGTTA+GGG 0.409538 8_4:-37982864 None:intergenic
CTTGTGAAAGGACTCTAGAT+TGG 0.429591 8_4:-37982922 None:intergenic
AATACAACAATGACTAATTA+CGG 0.433579 8_4:-37984471 None:intergenic
CCTCATCCAATTGAAATTGA+AGG 0.440955 8_4:+37982743 Msa1325650:five_prime_UTR
CAGACACTGGCTTGAGGCAC+AGG 0.442721 8_4:-37984301 None:intergenic
AGGTATGTTATCTTTGAATA+CGG 0.445037 8_4:+37982943 Msa1325650:CDS
TCGGGAGAAACTTAGTGAAC+CGG 0.456361 8_4:-37982891 None:intergenic
AGCCTGACGAGCTCTCTTAA+TGG 0.465591 8_4:-37983023 None:intergenic
GTTACGGTACCTTCTTGGTA+CGG 0.488702 8_4:-37983093 None:intergenic
TTGTGAAAGGACTCTAGATT+GGG 0.495815 8_4:-37982921 None:intergenic
CAGGGGCATACCAGCCATGA+TGG 0.502689 8_4:-37984282 None:intergenic
TCCAATCATCTTCTCAATTG+AGG 0.507360 8_4:-37984152 None:intergenic
TTACGGTACCTTCTTGGTAC+GGG 0.518973 8_4:-37983092 None:intergenic
CCTTCAATTTCAATTGGATG+AGG 0.519784 8_4:-37982743 None:intergenic
GAGATGCTGTAAACATCAAA+GGG 0.521125 8_4:-37984449 None:intergenic
CTCATCCAATTGAAATTGAA+GGG 0.535516 8_4:+37982744 Msa1325650:five_prime_UTR
TGTGCGTTAAGTTCTCACTT+TGG 0.540079 8_4:-37984340 None:intergenic
AATTGACAAAGCAGTGAAAG+TGG 0.540256 8_4:+37984189 Msa1325650:CDS
CAGTAGAGATCCATCATGGC+TGG 0.548246 8_4:+37984272 Msa1325650:CDS
ATTTGTAAATGTGGCTCAAG+AGG 0.548855 8_4:-37984615 None:intergenic
GGAGATGCTGTAAACATCAA+AGG 0.551688 8_4:-37984450 None:intergenic
CAGGAGCAAATCGCATGTCT+CGG 0.565582 8_4:+37984230 Msa1325650:CDS
GTGTTTATGGCATGACTGAT+GGG 0.571420 8_4:-37984590 None:intergenic
AAGATAACATACCTTGTGAA+AGG 0.576623 8_4:-37982934 None:intergenic
TCGGCTTGCCAGAAGAAAGA+AGG 0.578440 8_4:+37984249 Msa1325650:CDS
AGTGTTTATGGCATGACTGA+TGG 0.581435 8_4:-37984591 None:intergenic
AGACACTGGCTTGAGGCACA+GGG 0.582207 8_4:-37984300 None:intergenic
CAATCTAGAGTCCTTTCACA+AGG 0.588356 8_4:+37982923 Msa1325650:CDS
ATATAAAAGGATTCAGACAC+TGG 0.591833 8_4:-37984314 None:intergenic
TTTGTAAATGTGGCTCAAGA+GGG 0.593123 8_4:-37984614 None:intergenic
ATCAGAGAAAGAGATAGAGA+TGG 0.602358 8_4:+37982790 Msa1325650:exon
GGAAAAGAAATACAGTTAAG+GGG 0.602619 8_4:+37982665 None:intergenic
AGAGAGCTCGTCAGGCTGAG+AGG 0.604628 8_4:+37983029 Msa1325650:CDS
GATTAGAACCCGTACCAAGA+AGG 0.607531 8_4:+37983084 Msa1325650:CDS
ATGGAGATTATCTTACTCGT+CGG 0.621496 8_4:+37982692 Msa1325650:five_prime_UTR
ATTGACAAAGCAGTGAAAGT+GGG 0.623402 8_4:+37984190 Msa1325650:CDS
TTGAATACGGTGCAGAAGCG+TGG 0.643767 8_4:+37982956 Msa1325650:CDS
AAGGCAGTAGAGATCCATCA+TGG 0.646488 8_4:+37984268 Msa1325650:CDS
TGGTGTTGTTGTTGTTTGCG+AGG 0.647337 8_4:+37982976 Msa1325650:CDS
GGAACTTTGCATAGAAACAC+AGG 0.653414 8_4:+37984211 Msa1325650:CDS
AGGATTCAGACACTGGCTTG+AGG 0.656971 8_4:-37984307 None:intergenic
TACTGCCATTAAGATTAAGG+AGG 0.666490 8_4:-37984516 None:intergenic
AATTGAGAAGATGATTGGAG+AGG 0.673219 8_4:+37984156 Msa1325650:CDS
CTGACGAGCTCTCTTAATGG+CGG 0.689854 8_4:-37983020 None:intergenic
GACACTGGCTTGAGGCACAG+GGG 0.714773 8_4:-37984299 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCATTTTCTCAAATTATTAT+TGG + chr8_4:37983161-37983180 Msa1325650:intron 15.0%
!!! TCATTTTCTCAAATTATTAT+TGG + chr8_4:37983161-37983180 Msa1325650:intron 15.0%
!! ATAGAATAGCTATAATAACA+TGG + chr8_4:37983250-37983269 Msa1325650:intron 20.0%
!!! GAAAACATGATTTGTATTTT+AGG + chr8_4:37983426-37983445 Msa1325650:intron 20.0%
!! TTATATGAGTTACACATTAT+GGG - chr8_4:37983516-37983535 None:intergenic 20.0%
!!! ATTGATAATATGCAAGAAAA+GGG + chr8_4:37983559-37983578 Msa1325650:intron 20.0%
!! AGAAATAGATGATAATATGA+TGG + chr8_4:37983590-37983609 Msa1325650:intron 20.0%
!! AATACAACAATGACTAATTA+CGG - chr8_4:37984474-37984493 None:intergenic 20.0%
!! ATAGAATAGCTATAATAACA+TGG + chr8_4:37983250-37983269 Msa1325650:intron 20.0%
!!! GAAAACATGATTTGTATTTT+AGG + chr8_4:37983426-37983445 Msa1325650:intron 20.0%
!! TTATATGAGTTACACATTAT+GGG - chr8_4:37983516-37983535 None:intergenic 20.0%
!!! ATTGATAATATGCAAGAAAA+GGG + chr8_4:37983559-37983578 Msa1325650:intron 20.0%
!! AGAAATAGATGATAATATGA+TGG + chr8_4:37983590-37983609 Msa1325650:intron 20.0%
!! AATACAACAATGACTAATTA+CGG - chr8_4:37984474-37984493 None:intergenic 20.0%
! ATGAGGAGATTATGAAATAA+AGG - chr8_4:37982729-37982748 None:intergenic 25.0%
!!! TGAATTTGATGATGAAGTTA+GGG - chr8_4:37982867-37982886 None:intergenic 25.0%
!!! TTGAATTTGATGATGAAGTT+AGG - chr8_4:37982868-37982887 None:intergenic 25.0%
! TCATCATCAAATTCAAATTC+CGG + chr8_4:37982872-37982891 Msa1325650:CDS 25.0%
! AGGTATGTTATCTTTGAATA+CGG + chr8_4:37982943-37982962 Msa1325650:CDS 25.0%
!! AATAGTTCAAGTTAGAGTTA+CGG - chr8_4:37983112-37983131 None:intergenic 25.0%
! TCTCAAATTATTATTGGTGT+CGG + chr8_4:37983167-37983186 Msa1325650:intron 25.0%
!! AAAATTGATTCCATAGCTTT+AGG + chr8_4:37983319-37983338 Msa1325650:intron 25.0%
!! AAATTGATTCCATAGCTTTA+GGG + chr8_4:37983320-37983339 Msa1325650:intron 25.0%
! TAATTATATAACTTGAGCGA+AGG - chr8_4:37983376-37983395 None:intergenic 25.0%
!!! CATGTTTTCAAGATGAAATT+GGG - chr8_4:37983415-37983434 None:intergenic 25.0%
!!! TCATGTTTTCAAGATGAAAT+TGG - chr8_4:37983416-37983435 None:intergenic 25.0%
! GTTATATGAGTTACACATTA+TGG - chr8_4:37983517-37983536 None:intergenic 25.0%
! TAACATTCCTTGAGAATATT+TGG + chr8_4:37983533-37983552 Msa1325650:intron 25.0%
!! CTTTTCTTGCATATTATCAA+TGG - chr8_4:37983560-37983579 None:intergenic 25.0%
!! CATTGATAATATGCAAGAAA+AGG + chr8_4:37983558-37983577 Msa1325650:intron 25.0%
!! ATGATAATATGATGGAGTAT+GGG + chr8_4:37983598-37983617 Msa1325650:intron 25.0%
! TCTTACTTTCAATTGTTTGT+AGG + chr8_4:37984072-37984091 Msa1325650:intron 25.0%
!! TTTCAATTGTTTGTAGGTTT+TGG + chr8_4:37984078-37984097 Msa1325650:intron 25.0%
! TCTCTGTCTTAAATTCAAAT+TGG + chr8_4:37984397-37984416 Msa1325650:three_prime_UTR 25.0%
! ATGAGGAGATTATGAAATAA+AGG - chr8_4:37982729-37982748 None:intergenic 25.0%
!!! TGAATTTGATGATGAAGTTA+GGG - chr8_4:37982867-37982886 None:intergenic 25.0%
!!! TTGAATTTGATGATGAAGTT+AGG - chr8_4:37982868-37982887 None:intergenic 25.0%
! TCATCATCAAATTCAAATTC+CGG + chr8_4:37982872-37982891 Msa1325650:CDS 25.0%
! AGGTATGTTATCTTTGAATA+CGG + chr8_4:37982943-37982962 Msa1325650:CDS 25.0%
!! AATAGTTCAAGTTAGAGTTA+CGG - chr8_4:37983112-37983131 None:intergenic 25.0%
! TCTCAAATTATTATTGGTGT+CGG + chr8_4:37983167-37983186 Msa1325650:intron 25.0%
!! AAAATTGATTCCATAGCTTT+AGG + chr8_4:37983319-37983338 Msa1325650:intron 25.0%
!! AAATTGATTCCATAGCTTTA+GGG + chr8_4:37983320-37983339 Msa1325650:intron 25.0%
! TAATTATATAACTTGAGCGA+AGG - chr8_4:37983376-37983395 None:intergenic 25.0%
!!! CATGTTTTCAAGATGAAATT+GGG - chr8_4:37983415-37983434 None:intergenic 25.0%
!!! TCATGTTTTCAAGATGAAAT+TGG - chr8_4:37983416-37983435 None:intergenic 25.0%
! GTTATATGAGTTACACATTA+TGG - chr8_4:37983517-37983536 None:intergenic 25.0%
! TAACATTCCTTGAGAATATT+TGG + chr8_4:37983533-37983552 Msa1325650:intron 25.0%
!! CTTTTCTTGCATATTATCAA+TGG - chr8_4:37983560-37983579 None:intergenic 25.0%
!! CATTGATAATATGCAAGAAA+AGG + chr8_4:37983558-37983577 Msa1325650:intron 25.0%
!! ATGATAATATGATGGAGTAT+GGG + chr8_4:37983598-37983617 Msa1325650:intron 25.0%
! TCTTACTTTCAATTGTTTGT+AGG + chr8_4:37984072-37984091 Msa1325650:intron 25.0%
!! TTTCAATTGTTTGTAGGTTT+TGG + chr8_4:37984078-37984097 Msa1325650:intron 25.0%
! TCTCTGTCTTAAATTCAAAT+TGG + chr8_4:37984397-37984416 Msa1325650:three_prime_UTR 25.0%
CTCATCCAATTGAAATTGAA+GGG + chr8_4:37982744-37982763 Msa1325650:five_prime_UTR 30.0%
CTTATCCCTTCAATTTCAAT+TGG - chr8_4:37982752-37982771 None:intergenic 30.0%
!! GTAAGATTCCTCATTTTTGA+AGG - chr8_4:37982845-37982864 None:intergenic 30.0%
AAGATAACATACCTTGTGAA+AGG - chr8_4:37982937-37982956 None:intergenic 30.0%
ATAGCTATTCTATGAAGAAC+TGG - chr8_4:37983243-37983262 None:intergenic 30.0%
! GATGATAATATGATGGAGTA+TGG + chr8_4:37983597-37983616 Msa1325650:intron 30.0%
! ATCATCAGAAAATGTTGCTT+CGG - chr8_4:37983654-37983673 None:intergenic 30.0%
TGACAATTCAACAGTTTAGA+AGG + chr8_4:37983729-37983748 Msa1325650:intron 30.0%
CAGAAACTAGAACTAAAACA+TGG - chr8_4:37983763-37983782 None:intergenic 30.0%
TGCAAATAAAACTACACGTT+GGG - chr8_4:37984034-37984053 None:intergenic 30.0%
ATATAAAAGGATTCAGACAC+TGG - chr8_4:37984317-37984336 None:intergenic 30.0%
CTCACTTTGGTACATATAAA+AGG - chr8_4:37984330-37984349 None:intergenic 30.0%
! AAGTACTGCCATTAAGATTA+AGG - chr8_4:37984522-37984541 None:intergenic 30.0%
!! CAGTACTTTTAGCTAAAACT+TGG + chr8_4:37984534-37984553 Msa1325650:three_prime_UTR 30.0%
CTCATCCAATTGAAATTGAA+GGG + chr8_4:37982744-37982763 Msa1325650:five_prime_UTR 30.0%
CTTATCCCTTCAATTTCAAT+TGG - chr8_4:37982752-37982771 None:intergenic 30.0%
!! GTAAGATTCCTCATTTTTGA+AGG - chr8_4:37982845-37982864 None:intergenic 30.0%
AAGATAACATACCTTGTGAA+AGG - chr8_4:37982937-37982956 None:intergenic 30.0%
ATAGCTATTCTATGAAGAAC+TGG - chr8_4:37983243-37983262 None:intergenic 30.0%
! GATGATAATATGATGGAGTA+TGG + chr8_4:37983597-37983616 Msa1325650:intron 30.0%
! ATCATCAGAAAATGTTGCTT+CGG - chr8_4:37983654-37983673 None:intergenic 30.0%
TGACAATTCAACAGTTTAGA+AGG + chr8_4:37983729-37983748 Msa1325650:intron 30.0%
CAGAAACTAGAACTAAAACA+TGG - chr8_4:37983763-37983782 None:intergenic 30.0%
TGCAAATAAAACTACACGTT+GGG - chr8_4:37984034-37984053 None:intergenic 30.0%
ATATAAAAGGATTCAGACAC+TGG - chr8_4:37984317-37984336 None:intergenic 30.0%
CTCACTTTGGTACATATAAA+AGG - chr8_4:37984330-37984349 None:intergenic 30.0%
! AAGTACTGCCATTAAGATTA+AGG - chr8_4:37984522-37984541 None:intergenic 30.0%
!! CAGTACTTTTAGCTAAAACT+TGG + chr8_4:37984534-37984553 Msa1325650:three_prime_UTR 30.0%
AATACAGTTAAGGGGTAGTA+TGG + chr8_4:37982673-37982692 Msa1325650:five_prime_UTR 35.0%
ATGGAGATTATCTTACTCGT+CGG + chr8_4:37982692-37982711 Msa1325650:five_prime_UTR 35.0%
CCTTCAATTTCAATTGGATG+AGG - chr8_4:37982746-37982765 None:intergenic 35.0%
CCTCATCCAATTGAAATTGA+AGG + chr8_4:37982743-37982762 Msa1325650:five_prime_UTR 35.0%
ATCAGAGAAAGAGATAGAGA+TGG + chr8_4:37982790-37982809 Msa1325650:exon 35.0%
TGAACCTTCCTTCAAAAATG+AGG + chr8_4:37982834-37982853 Msa1325650:CDS 35.0%
!! GATTCCTCATTTTTGAAGGA+AGG - chr8_4:37982841-37982860 None:intergenic 35.0%
TCTAGATTGGGAAATGTTTC+GGG - chr8_4:37982912-37982931 None:intergenic 35.0%
CTCTAGATTGGGAAATGTTT+CGG - chr8_4:37982913-37982932 None:intergenic 35.0%
TTGTGAAAGGACTCTAGATT+GGG - chr8_4:37982924-37982943 None:intergenic 35.0%
ATGAAATTGGGTGATGACAA+TGG - chr8_4:37983403-37983422 None:intergenic 35.0%
AAAACAAGAACACAACACCT+GGG - chr8_4:37983459-37983478 None:intergenic 35.0%
AAAAACAAGAACACAACACC+TGG - chr8_4:37983460-37983479 None:intergenic 35.0%
CAATGGTCCAAATATTCTCA+AGG - chr8_4:37983543-37983562 None:intergenic 35.0%
GTGGAGTTTCATTATCTTAC+AGG - chr8_4:37983899-37983918 None:intergenic 35.0%
TCAGGGATTCTTATTGTTTG+TGG - chr8_4:37983918-37983937 None:intergenic 35.0%
AACAATAAGAATCCCTGACA+TGG + chr8_4:37983920-37983939 Msa1325650:intron 35.0%
GTAGCTGATGTTATAATTGC+AGG + chr8_4:37983942-37983961 Msa1325650:intron 35.0%
GCAAATAAAACTACACGTTG+GGG - chr8_4:37984033-37984052 None:intergenic 35.0%
CTGCAAATAAAACTACACGT+TGG - chr8_4:37984035-37984054 None:intergenic 35.0%
!!! CAACGTGTAGTTTTATTTGC+AGG + chr8_4:37984033-37984052 Msa1325650:intron 35.0%
TCCAATCATCTTCTCAATTG+AGG - chr8_4:37984155-37984174 None:intergenic 35.0%
AATTGAGAAGATGATTGGAG+AGG + chr8_4:37984156-37984175 Msa1325650:CDS 35.0%
AATTGACAAAGCAGTGAAAG+TGG + chr8_4:37984189-37984208 Msa1325650:CDS 35.0%
ATTGACAAAGCAGTGAAAGT+GGG + chr8_4:37984190-37984209 Msa1325650:CDS 35.0%
GAGATGCTGTAAACATCAAA+GGG - chr8_4:37984452-37984471 None:intergenic 35.0%
ACATGCCTCCTTAATCTTAA+TGG + chr8_4:37984511-37984530 Msa1325650:three_prime_UTR 35.0%
TACTGCCATTAAGATTAAGG+AGG - chr8_4:37984519-37984538 None:intergenic 35.0%
ACCCCTTAACTGTATTTCTT+TGG - chr8_4:37982669-37982688 None:intergenic 35.0%
AATACAGTTAAGGGGTAGTA+TGG + chr8_4:37982673-37982692 Msa1325650:five_prime_UTR 35.0%
ATGGAGATTATCTTACTCGT+CGG + chr8_4:37982692-37982711 Msa1325650:five_prime_UTR 35.0%
CCTTCAATTTCAATTGGATG+AGG - chr8_4:37982746-37982765 None:intergenic 35.0%
CCTCATCCAATTGAAATTGA+AGG + chr8_4:37982743-37982762 Msa1325650:five_prime_UTR 35.0%
ATCAGAGAAAGAGATAGAGA+TGG + chr8_4:37982790-37982809 Msa1325650:exon 35.0%
TGAACCTTCCTTCAAAAATG+AGG + chr8_4:37982834-37982853 Msa1325650:CDS 35.0%
!! GATTCCTCATTTTTGAAGGA+AGG - chr8_4:37982841-37982860 None:intergenic 35.0%
TCTAGATTGGGAAATGTTTC+GGG - chr8_4:37982912-37982931 None:intergenic 35.0%
CTCTAGATTGGGAAATGTTT+CGG - chr8_4:37982913-37982932 None:intergenic 35.0%
TTGTGAAAGGACTCTAGATT+GGG - chr8_4:37982924-37982943 None:intergenic 35.0%
ATGAAATTGGGTGATGACAA+TGG - chr8_4:37983403-37983422 None:intergenic 35.0%
AAAACAAGAACACAACACCT+GGG - chr8_4:37983459-37983478 None:intergenic 35.0%
AAAAACAAGAACACAACACC+TGG - chr8_4:37983460-37983479 None:intergenic 35.0%
CAATGGTCCAAATATTCTCA+AGG - chr8_4:37983543-37983562 None:intergenic 35.0%
GTGGAGTTTCATTATCTTAC+AGG - chr8_4:37983899-37983918 None:intergenic 35.0%
TCAGGGATTCTTATTGTTTG+TGG - chr8_4:37983918-37983937 None:intergenic 35.0%
AACAATAAGAATCCCTGACA+TGG + chr8_4:37983920-37983939 Msa1325650:intron 35.0%
GTAGCTGATGTTATAATTGC+AGG + chr8_4:37983942-37983961 Msa1325650:intron 35.0%
GCAAATAAAACTACACGTTG+GGG - chr8_4:37984033-37984052 None:intergenic 35.0%
CTGCAAATAAAACTACACGT+TGG - chr8_4:37984035-37984054 None:intergenic 35.0%
!!! CAACGTGTAGTTTTATTTGC+AGG + chr8_4:37984033-37984052 Msa1325650:intron 35.0%
TCCAATCATCTTCTCAATTG+AGG - chr8_4:37984155-37984174 None:intergenic 35.0%
AATTGAGAAGATGATTGGAG+AGG + chr8_4:37984156-37984175 Msa1325650:CDS 35.0%
AATTGACAAAGCAGTGAAAG+TGG + chr8_4:37984189-37984208 Msa1325650:CDS 35.0%
ATTGACAAAGCAGTGAAAGT+GGG + chr8_4:37984190-37984209 Msa1325650:CDS 35.0%
GAGATGCTGTAAACATCAAA+GGG - chr8_4:37984452-37984471 None:intergenic 35.0%
ACATGCCTCCTTAATCTTAA+TGG + chr8_4:37984511-37984530 Msa1325650:three_prime_UTR 35.0%
TACTGCCATTAAGATTAAGG+AGG - chr8_4:37984519-37984538 None:intergenic 35.0%
CTTGTGAAAGGACTCTAGAT+TGG - chr8_4:37982925-37982944 None:intergenic 40.0%
! CAATCTAGAGTCCTTTCACA+AGG + chr8_4:37982923-37982942 Msa1325650:CDS 40.0%
! ATGGCGGAATCAACTTTCTT+TGG - chr8_4:37983007-37983026 None:intergenic 40.0%
TTAGAGTTACGGTACCTTCT+TGG - chr8_4:37983101-37983120 None:intergenic 40.0%
!! TATTATTGGTGTCGGCATGT+TGG + chr8_4:37983175-37983194 Msa1325650:intron 40.0%
!! TCCATAGCTTTAGGGATTAG+AGG + chr8_4:37983328-37983347 Msa1325650:intron 40.0%
!! CCATAGCTTTAGGGATTAGA+GGG + chr8_4:37983329-37983348 Msa1325650:intron 40.0%
AGAGGGAAGTTTGAGTAACA+TGG + chr8_4:37983346-37983365 Msa1325650:intron 40.0%
! TATGATGGAGTATGGGATAG+TGG + chr8_4:37983605-37983624 Msa1325650:intron 40.0%
! ATGATGGAGTATGGGATAGT+GGG + chr8_4:37983606-37983625 Msa1325650:intron 40.0%
!! TGTTTCAAGTTACTGAACCC+TGG + chr8_4:37983674-37983693 Msa1325650:intron 40.0%
TAACATCAGCTACCATGTCA+GGG - chr8_4:37983935-37983954 None:intergenic 40.0%
ATAACATCAGCTACCATGTC+AGG - chr8_4:37983936-37983955 None:intergenic 40.0%
ATAAAACTACACGTTGGGGT+TGG - chr8_4:37984029-37984048 None:intergenic 40.0%
!!! TTTGTAGGTTTTGGAAGCAC+TGG + chr8_4:37984087-37984106 Msa1325650:intron 40.0%
GCCTCAATTGAGAAGATGAT+TGG + chr8_4:37984151-37984170 Msa1325650:CDS 40.0%
GGAACTTTGCATAGAAACAC+AGG + chr8_4:37984211-37984230 Msa1325650:CDS 40.0%
TGTGCGTTAAGTTCTCACTT+TGG - chr8_4:37984343-37984362 None:intergenic 40.0%
GGAGATGCTGTAAACATCAA+AGG - chr8_4:37984453-37984472 None:intergenic 40.0%
GTGTTTATGGCATGACTGAT+GGG - chr8_4:37984593-37984612 None:intergenic 40.0%
AGTGTTTATGGCATGACTGA+TGG - chr8_4:37984594-37984613 None:intergenic 40.0%
CTTGTGAAAGGACTCTAGAT+TGG - chr8_4:37982925-37982944 None:intergenic 40.0%
! CAATCTAGAGTCCTTTCACA+AGG + chr8_4:37982923-37982942 Msa1325650:CDS 40.0%
! ATGGCGGAATCAACTTTCTT+TGG - chr8_4:37983007-37983026 None:intergenic 40.0%
TTAGAGTTACGGTACCTTCT+TGG - chr8_4:37983101-37983120 None:intergenic 40.0%
!! TATTATTGGTGTCGGCATGT+TGG + chr8_4:37983175-37983194 Msa1325650:intron 40.0%
!! TCCATAGCTTTAGGGATTAG+AGG + chr8_4:37983328-37983347 Msa1325650:intron 40.0%
!! CCATAGCTTTAGGGATTAGA+GGG + chr8_4:37983329-37983348 Msa1325650:intron 40.0%
AGAGGGAAGTTTGAGTAACA+TGG + chr8_4:37983346-37983365 Msa1325650:intron 40.0%
! TATGATGGAGTATGGGATAG+TGG + chr8_4:37983605-37983624 Msa1325650:intron 40.0%
! ATGATGGAGTATGGGATAGT+GGG + chr8_4:37983606-37983625 Msa1325650:intron 40.0%
!! TGTTTCAAGTTACTGAACCC+TGG + chr8_4:37983674-37983693 Msa1325650:intron 40.0%
TAACATCAGCTACCATGTCA+GGG - chr8_4:37983935-37983954 None:intergenic 40.0%
ATAACATCAGCTACCATGTC+AGG - chr8_4:37983936-37983955 None:intergenic 40.0%
ATAAAACTACACGTTGGGGT+TGG - chr8_4:37984029-37984048 None:intergenic 40.0%
!!! TTTGTAGGTTTTGGAAGCAC+TGG + chr8_4:37984087-37984106 Msa1325650:intron 40.0%
GCCTCAATTGAGAAGATGAT+TGG + chr8_4:37984151-37984170 Msa1325650:CDS 40.0%
GGAACTTTGCATAGAAACAC+AGG + chr8_4:37984211-37984230 Msa1325650:CDS 40.0%
TGTGCGTTAAGTTCTCACTT+TGG - chr8_4:37984343-37984362 None:intergenic 40.0%
GGAGATGCTGTAAACATCAA+AGG - chr8_4:37984453-37984472 None:intergenic 40.0%
GTGTTTATGGCATGACTGAT+GGG - chr8_4:37984593-37984612 None:intergenic 40.0%
AGTGTTTATGGCATGACTGA+TGG - chr8_4:37984594-37984613 None:intergenic 40.0%
TCGGGAGAAACTTAGTGAAC+CGG - chr8_4:37982894-37982913 None:intergenic 45.0%
!! TGGTGTTGTTGTTGTTTGCG+AGG + chr8_4:37982976-37982995 Msa1325650:CDS 45.0%
! CTTGGTACGGGTTCTAATCT+CGG - chr8_4:37983083-37983102 None:intergenic 45.0%
GATTAGAACCCGTACCAAGA+AGG + chr8_4:37983084-37983103 Msa1325650:CDS 45.0%
TTACGGTACCTTCTTGGTAC+GGG - chr8_4:37983095-37983114 None:intergenic 45.0%
GTTACGGTACCTTCTTGGTA+CGG - chr8_4:37983096-37983115 None:intergenic 45.0%
CCCTCTAATCCCTAAAGCTA+TGG - chr8_4:37983332-37983351 None:intergenic 45.0%
!! GTATTTTAGGTGTCAGACCC+AGG + chr8_4:37983439-37983458 Msa1325650:intron 45.0%
!! TGGGATAGTGGGAGAGAAAA+TGG + chr8_4:37983617-37983636 Msa1325650:intron 45.0%
! TTCAAGTTACTGAACCCTGG+AGG + chr8_4:37983677-37983696 Msa1325650:intron 45.0%
CTCTACTGCCTTCTTTCTTC+TGG - chr8_4:37984260-37984279 None:intergenic 45.0%
AAGGCAGTAGAGATCCATCA+TGG + chr8_4:37984268-37984287 Msa1325650:CDS 45.0%
TCGGGAGAAACTTAGTGAAC+CGG - chr8_4:37982894-37982913 None:intergenic 45.0%
!! TGGTGTTGTTGTTGTTTGCG+AGG + chr8_4:37982976-37982995 Msa1325650:CDS 45.0%
! CTTGGTACGGGTTCTAATCT+CGG - chr8_4:37983083-37983102 None:intergenic 45.0%
GATTAGAACCCGTACCAAGA+AGG + chr8_4:37983084-37983103 Msa1325650:CDS 45.0%
TTACGGTACCTTCTTGGTAC+GGG - chr8_4:37983095-37983114 None:intergenic 45.0%
GTTACGGTACCTTCTTGGTA+CGG - chr8_4:37983096-37983115 None:intergenic 45.0%
CCCTCTAATCCCTAAAGCTA+TGG - chr8_4:37983332-37983351 None:intergenic 45.0%
!! GTATTTTAGGTGTCAGACCC+AGG + chr8_4:37983439-37983458 Msa1325650:intron 45.0%
!! TGGGATAGTGGGAGAGAAAA+TGG + chr8_4:37983617-37983636 Msa1325650:intron 45.0%
! TTCAAGTTACTGAACCCTGG+AGG + chr8_4:37983677-37983696 Msa1325650:intron 45.0%
CTCTACTGCCTTCTTTCTTC+TGG - chr8_4:37984260-37984279 None:intergenic 45.0%
AAGGCAGTAGAGATCCATCA+TGG + chr8_4:37984268-37984287 Msa1325650:CDS 45.0%
TTGAATACGGTGCAGAAGCG+TGG + chr8_4:37982956-37982975 Msa1325650:CDS 50.0%
CTGACGAGCTCTCTTAATGG+CGG - chr8_4:37983023-37983042 None:intergenic 50.0%
AGCCTGACGAGCTCTCTTAA+TGG - chr8_4:37983026-37983045 None:intergenic 50.0%
ACTGGCACAAACACAGACAC+CGG - chr8_4:37983225-37983244 None:intergenic 50.0%
AGGCGCAAATTAGGTGGTAC+TGG + chr8_4:37983697-37983716 Msa1325650:intron 50.0%
CAGGAGCAAATCGCATGTCT+CGG + chr8_4:37984230-37984249 Msa1325650:CDS 50.0%
! TCGGCTTGCCAGAAGAAAGA+AGG + chr8_4:37984249-37984268 Msa1325650:CDS 50.0%
CAGTAGAGATCCATCATGGC+TGG + chr8_4:37984272-37984291 Msa1325650:CDS 50.0%
!! AGGATTCAGACACTGGCTTG+AGG - chr8_4:37984310-37984329 None:intergenic 50.0%
!! GGCTCAAGAGGGAGTGTTTA+TGG - chr8_4:37984606-37984625 None:intergenic 50.0%
TTGAATACGGTGCAGAAGCG+TGG + chr8_4:37982956-37982975 Msa1325650:CDS 50.0%
CTGACGAGCTCTCTTAATGG+CGG - chr8_4:37983023-37983042 None:intergenic 50.0%
AGCCTGACGAGCTCTCTTAA+TGG - chr8_4:37983026-37983045 None:intergenic 50.0%
ACTGGCACAAACACAGACAC+CGG - chr8_4:37983225-37983244 None:intergenic 50.0%
AGGCGCAAATTAGGTGGTAC+TGG + chr8_4:37983697-37983716 Msa1325650:intron 50.0%
CAGGAGCAAATCGCATGTCT+CGG + chr8_4:37984230-37984249 Msa1325650:CDS 50.0%
! TCGGCTTGCCAGAAGAAAGA+AGG + chr8_4:37984249-37984268 Msa1325650:CDS 50.0%
CAGTAGAGATCCATCATGGC+TGG + chr8_4:37984272-37984291 Msa1325650:CDS 50.0%
!! AGGATTCAGACACTGGCTTG+AGG - chr8_4:37984310-37984329 None:intergenic 50.0%
!! GGCTCAAGAGGGAGTGTTTA+TGG - chr8_4:37984606-37984625 None:intergenic 50.0%
CGCCATTAAGAGAGCTCGTC+AGG + chr8_4:37983021-37983040 Msa1325650:CDS 55.0%
!! TGGTGTCGGCATGTTGGTGT+TGG + chr8_4:37983181-37983200 Msa1325650:intron 55.0%
!! GTCGGCATGTTGGTGTTGGT+TGG + chr8_4:37983185-37983204 Msa1325650:intron 55.0%
!! GTTGGTGCCAGTGTTGTGTC+CGG + chr8_4:37983203-37983222 Msa1325650:intron 55.0%
ACAGACACCGGACACAACAC+TGG - chr8_4:37983213-37983232 None:intergenic 55.0%
! GAACCCTGGAGGCGCAAATT+AGG + chr8_4:37983688-37983707 Msa1325650:intron 55.0%
! CCACCTAATTTGCGCCTCCA+GGG - chr8_4:37983694-37983713 None:intergenic 55.0%
! ACCACCTAATTTGCGCCTCC+AGG - chr8_4:37983695-37983714 None:intergenic 55.0%
!! AGACACTGGCTTGAGGCACA+GGG - chr8_4:37984303-37984322 None:intergenic 55.0%
CGCCATTAAGAGAGCTCGTC+AGG + chr8_4:37983021-37983040 Msa1325650:CDS 55.0%
!! TGGTGTCGGCATGTTGGTGT+TGG + chr8_4:37983181-37983200 Msa1325650:intron 55.0%
!! GTCGGCATGTTGGTGTTGGT+TGG + chr8_4:37983185-37983204 Msa1325650:intron 55.0%
!! GTTGGTGCCAGTGTTGTGTC+CGG + chr8_4:37983203-37983222 Msa1325650:intron 55.0%
ACAGACACCGGACACAACAC+TGG - chr8_4:37983213-37983232 None:intergenic 55.0%
! GAACCCTGGAGGCGCAAATT+AGG + chr8_4:37983688-37983707 Msa1325650:intron 55.0%
! CCACCTAATTTGCGCCTCCA+GGG - chr8_4:37983694-37983713 None:intergenic 55.0%
! ACCACCTAATTTGCGCCTCC+AGG - chr8_4:37983695-37983714 None:intergenic 55.0%
!! AGACACTGGCTTGAGGCACA+GGG - chr8_4:37984303-37984322 None:intergenic 55.0%
AGAGAGCTCGTCAGGCTGAG+AGG + chr8_4:37983029-37983048 Msa1325650:CDS 60.0%
! CCCTGGAGGCGCAAATTAGG+TGG + chr8_4:37983691-37983710 Msa1325650:intron 60.0%
! CAGGGGCATACCAGCCATGA+TGG - chr8_4:37984285-37984304 None:intergenic 60.0%
!! GACACTGGCTTGAGGCACAG+GGG - chr8_4:37984302-37984321 None:intergenic 60.0%
!! CAGACACTGGCTTGAGGCAC+AGG - chr8_4:37984304-37984323 None:intergenic 60.0%
AGAGAGCTCGTCAGGCTGAG+AGG + chr8_4:37983029-37983048 Msa1325650:CDS 60.0%
! CCCTGGAGGCGCAAATTAGG+TGG + chr8_4:37983691-37983710 Msa1325650:intron 60.0%
! CAGGGGCATACCAGCCATGA+TGG - chr8_4:37984285-37984304 None:intergenic 60.0%
!! GACACTGGCTTGAGGCACAG+GGG - chr8_4:37984302-37984321 None:intergenic 60.0%
!! CAGACACTGGCTTGAGGCAC+AGG - chr8_4:37984304-37984323 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 37982669 37984626 37982669 ID=Msa1325650;Name=Msa1325650
chr8_4 mRNA 37982669 37984626 37982669 ID=Msa1325650-mRNA-1;Parent=Msa1325650;Name=Msa1325650-mRNA-1;_AED=0.00;_eAED=0.00;_QI=140|1|1|1|1|1|2|302|175
chr8_4 exon 37982669 37983105 37982669 ID=Msa1325650-mRNA-1:exon:11591;Parent=Msa1325650-mRNA-1
chr8_4 exon 37984094 37984626 37984094 ID=Msa1325650-mRNA-1:exon:11592;Parent=Msa1325650-mRNA-1
chr8_4 five_prime_UTR 37982669 37982808 37982669 ID=Msa1325650-mRNA-1:five_prime_utr;Parent=Msa1325650-mRNA-1
chr8_4 CDS 37982809 37983105 37982809 ID=Msa1325650-mRNA-1:cds;Parent=Msa1325650-mRNA-1
chr8_4 CDS 37984094 37984324 37984094 ID=Msa1325650-mRNA-1:cds;Parent=Msa1325650-mRNA-1
chr8_4 three_prime_UTR 37984325 37984626 37984325 ID=Msa1325650-mRNA-1:three_prime_utr;Parent=Msa1325650-mRNA-1
Gene Sequence

>Msa1325650

ATGGCTTCAGTTTCATGTTCATTGTTGAACCTTCCTTCAAAAATGAGGAATCTTACCCTAACTTCATCATCAAATTCAAATTCCGGTTCACTAAGTTTCTCCCGAAACATTTCCCAATCTAGAGTCCTTTCACAAGGTATGTTATCTTTGAATACGGTGCAGAAGCGTGGTGTTGTTGTTGTTTGCGAGGCTGCTCCAAAGAAAGTTGATTCCGCCATTAAGAGAGCTCGTCAGGCTGAGAGGCGTCGCATTTACAACAAAGCTCGTAAATCCGAGATTAGAACCCGTACCAAGAAGGTTTTGGAAGCACTGGAGTTGCTTAAAAAGAAATCTGATGCACAAGCAGAAGAAATTGCCTCAATTGAGAAGATGATTGGAGAGGCATACTCTATAATTGACAAAGCAGTGAAAGTGGGAACTTTGCATAGAAACACAGGAGCAAATCGCATGTCTCGGCTTGCCAGAAGAAAGAAGGCAGTAGAGATCCATCATGGCTGGTATGCCCCTGTGCCTCAAGCCAGTGTCTGA

Protein sequence

>Msa1325650

MASVSCSLLNLPSKMRNLTLTSSSNSNSGSLSFSRNISQSRVLSQGMLSLNTVQKRGVVVVCEAAPKKVDSAIKRARQAERRRIYNKARKSEIRTRTKKVLEALELLKKKSDAQAEEIASIEKMIGEAYSIIDKAVKVGTLHRNTGANRMSRLARRKKAVEIHHGWYAPVPQASV*