AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0610860


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0610860 MtrunA17_Chr4g0043941 96.657 329 11 0 32 360 4 332 0.0 652
Msa0610860 MtrunA17_Chr6g0448821 27.010 311 191 4 74 350 52 360 2.45e-35 132
Msa0610860 MtrunA17_Chr5g0428941 24.333 300 223 4 49 347 187 483 1.60e-31 124
Msa0610860 MtrunA17_Chr5g0428941 22.727 220 161 3 71 290 141 351 1.18e-13 72.0
Msa0610860 MtrunA17_Chr4g0034981 25.850 294 213 5 56 347 296 586 9.93e-31 123
Msa0610860 MtrunA17_Chr2g0294671 26.374 273 195 4 75 347 217 483 1.41e-26 110
Msa0610860 MtrunA17_Chr2g0294671 29.605 152 105 2 137 288 207 356 3.54e-14 73.6
Msa0610860 MtrunA17_Chr2g0294671 23.451 226 162 3 29 251 278 495 1.17e-12 68.9
Msa0610860 MtrunA17_Chr1g0212691 22.115 312 199 5 75 347 145 451 6.56e-25 105
Msa0610860 MtrunA17_Chr1g0212691 24.675 231 148 3 73 278 82 311 1.42e-16 80.9
Msa0610860 MtrunA17_Chr5g0445491 27.820 266 178 6 70 326 188 448 1.72e-23 101
Msa0610860 MtrunA17_Chr5g0445491 27.948 229 161 3 69 296 226 451 3.22e-19 89.0
Msa0610860 MtrunA17_Chr2g0304101 23.600 250 181 4 97 346 65 304 8.98e-18 82.8
Msa0610860 MtrunA17_Chr5g0417641 26.754 228 152 3 125 346 74 292 1.23e-16 79.7
Msa0610860 MtrunA17_Chr7g0250261 29.032 217 134 5 144 350 77 283 1.27e-16 79.3
Msa0610860 MtrunA17_Chr0c29g0494001 29.032 217 134 5 144 350 77 283 1.27e-16 79.3
Msa0610860 MtrunA17_Chr2g0311181 23.789 227 159 4 124 347 85 300 2.95e-16 79.0
Msa0610860 MtrunA17_Chr2g0296191 22.892 332 235 9 28 352 177 494 9.67e-13 69.7
Msa0610860 MtrunA17_Chr8g0339041 21.269 268 199 5 45 312 63 318 7.04e-12 66.2
Msa0610860 MtrunA17_Chr8g0391881 20.243 247 193 4 74 319 127 370 7.32e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0610860 AT4G38160.4 66.154 325 108 2 32 354 4 328 2.32e-160 452
Msa0610860 AT4G38160.1 66.154 325 108 2 32 354 4 328 2.32e-160 452
Msa0610860 AT4G38160.2 66.358 324 107 2 33 354 5 328 9.11e-160 452
Msa0610860 AT4G38160.3 66.154 325 108 2 32 354 4 328 2.14e-159 452
Msa0610860 AT2G21710.1 25.776 322 199 8 65 349 277 595 1.97e-32 128
Msa0610860 AT1G78930.1 29.368 269 184 4 92 357 323 588 4.60e-31 124
Msa0610860 AT4G02990.2 21.935 310 204 3 74 347 184 491 4.29e-28 115
Msa0610860 AT4G02990.2 21.147 279 189 4 42 293 92 366 4.60e-16 79.7
Msa0610860 AT4G02990.1 21.935 310 204 3 74 347 184 491 4.29e-28 115
Msa0610860 AT4G02990.1 21.147 279 189 4 42 293 92 366 4.60e-16 79.7
Msa0610860 AT4G14605.2 27.757 263 184 4 85 347 212 468 2.50e-27 112
Msa0610860 AT4G14605.2 23.786 206 149 2 32 237 266 463 1.18e-13 72.4
Msa0610860 AT4G14605.1 27.757 263 184 4 85 347 212 468 2.50e-27 112
Msa0610860 AT4G14605.1 23.786 206 149 2 32 237 266 463 1.18e-13 72.4
Msa0610860 AT2G44020.1 24.679 312 191 5 75 347 150 456 5.71e-27 112
Msa0610860 AT2G44020.1 24.038 208 153 2 71 278 114 316 4.53e-16 79.7
Msa0610860 AT2G21710.2 25.442 283 171 8 65 310 277 556 1.02e-23 102
Msa0610860 AT2G21710.3 25.623 281 169 8 65 308 277 554 1.59e-23 102
Msa0610860 AT2G03050.1 27.004 237 166 4 112 347 39 269 3.07e-23 98.2
Msa0610860 AT2G03050.2 27.004 237 166 4 112 347 40 270 3.18e-23 98.2
Msa0610860 AT5G55580.2 25.475 263 176 6 74 326 83 335 1.31e-21 95.5
Msa0610860 AT5G55580.2 25.217 230 166 4 69 296 113 338 1.32e-18 86.7
Msa0610860 AT5G55580.1 25.475 263 176 6 74 326 189 441 3.53e-21 95.1
Msa0610860 AT5G55580.1 25.217 230 166 4 69 296 219 444 3.85e-18 85.9
Msa0610860 AT2G36000.2 26.562 192 134 2 156 346 122 307 3.61e-19 87.4
Msa0610860 AT2G36000.1 26.562 192 134 2 156 346 122 307 4.84e-19 87.4
Msa0610860 AT2G34620.1 23.529 204 154 1 144 347 90 291 7.42e-19 86.3
Msa0610860 AT2G34620.1 29.333 150 102 3 75 223 93 239 4.24e-12 66.6
Msa0610860 AT3G18870.1 29.851 201 135 5 152 350 76 272 5.76e-18 83.2
Msa0610860 AT5G54180.1 27.481 262 179 9 89 346 234 488 7.70e-18 85.1
Msa0610860 AT5G54180.1 22.713 317 201 9 15 296 61 368 7.96e-11 63.5
Msa0610860 AT5G55580.3 24.859 177 130 3 69 243 219 394 3.70e-14 73.6
Msa0610860 AT5G55580.3 25.116 215 141 6 74 278 189 393 7.66e-13 69.7
Msa0610860 AT1G21150.2 19.643 280 206 6 19 289 131 400 4.91e-11 64.3
Msa0610860 AT5G64950.1 29.448 163 108 5 118 278 52 209 5.84e-11 63.9
Msa0610860 AT1G21150.1 19.643 280 206 6 19 289 67 336 6.32e-11 63.5
Msa0610860 AT1G21150.3 19.643 280 206 6 19 289 31 300 8.68e-11 63.2

Find 73 sgRNAs with CRISPR-Local

Find 215 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGACCAAGTACAAGAATTT+TGG 0.151290 4_2:+58784156 None:intergenic
GATTAAGGACCCGTATATTA+TGG 0.175262 4_2:-58783840 Msa0610860:CDS
GCGAACGAGCCAATGAAAAT+TGG 0.202887 4_2:-58784240 Msa0610860:CDS
GATTAATTTGTAGAGTAAAA+TGG 0.249320 4_2:-58784380 Msa0610860:intron
AGAGAAGCTTTGTCCTCTTT+TGG 0.259572 4_2:-58784023 Msa0610860:CDS
CAAGAGTGTTCGGAATTCTT+TGG 0.260167 4_2:-58783600 Msa0610860:CDS
ATAAGTTATCCTTTGGATCT+AGG 0.275546 4_2:-58783175 Msa0610860:three_prime_UTR
ACACTATAACCCATAATATA+CGG 0.287612 4_2:+58783830 None:intergenic
CGAACACTCTTGATCAAAAT+AGG 0.322211 4_2:+58783611 None:intergenic
TTTGACTGAGCAGGATCTTC+AGG 0.331599 4_2:-58783762 Msa0610860:CDS
TTAAAGAACTGTGGATTTCA+TGG 0.334993 4_2:-58783668 Msa0610860:CDS
AAGAAGTTCCACTTGAAGTT+TGG 0.341154 4_2:-58783407 Msa0610860:CDS
TTGAAGTTTGGCTTGTTAGA+AGG 0.350213 4_2:-58783395 Msa0610860:CDS
TGGGAGTATTTGAAAACAAT+TGG 0.351216 4_2:-58784220 Msa0610860:CDS
TAGAGATGTGGATAAGGTTT+TGG 0.354515 4_2:-58783708 Msa0610860:CDS
TGGGTTATAGTGTTGATAAA+AGG 0.361012 4_2:-58783820 Msa0610860:CDS
TACGATAATAAGTTATCCTT+TGG 0.367913 4_2:-58783182 Msa0610860:three_prime_UTR
TGGCCGGCAGATAGTTGATT+TGG 0.380260 4_2:-58783648 Msa0610860:CDS
TGCCCCAAAATTCTTGTACT+TGG 0.381501 4_2:-58784160 Msa0610860:CDS
ATTAAGGACCCGTATATTAT+GGG 0.382034 4_2:-58783839 Msa0610860:CDS
CTTGATAAAGACGGAATGAT+TGG 0.389340 4_2:-58783872 Msa0610860:CDS
CTTCCGCGGAACAACCCTTC+AGG 0.395544 4_2:-58784544 Msa0610860:intron
GCTGCTGTTATTGCCGCTAC+TGG 0.445431 4_2:+58784354 None:intergenic
CGAACGAGCCAATGAAAATT+GGG 0.448262 4_2:-58784239 Msa0610860:CDS
TTTGAGTAGAGATGTGGATA+AGG 0.454342 4_2:-58783714 Msa0610860:CDS
CAGATAGTTGATTTGGTGGT+TGG 0.459004 4_2:-58783641 Msa0610860:CDS
GTGAAATTTCTTGCTAGTGT+TGG 0.461499 4_2:-58783896 Msa0610860:CDS
ATGCTATAACTAATAAGCCT+AGG 0.489054 4_2:+58783941 None:intergenic
CAATGAAAAGATTGTTCCAA+TGG 0.489343 4_2:-58784134 Msa0610860:CDS
TTGCAGCTTGAGTGAAATGC+TGG 0.494640 4_2:-58783441 Msa0610860:CDS
TATCCATGCTTCTTTCGTCA+TGG 0.501505 4_2:-58783518 Msa0610860:CDS
TTGTTCCGCGGAAGCAGATA+AGG 0.505527 4_2:+58784553 None:intergenic
GTCGATAGGTTTGACTGAGC+AGG 0.509092 4_2:-58783771 Msa0610860:CDS
CCGGCAGATAGTTGATTTGG+TGG 0.512541 4_2:-58783645 Msa0610860:CDS
ACACTACAAGAGAGTATTTG+AGG 0.513102 4_2:+58784049 None:intergenic
AGAACTGTGGATTTCATGGC+CGG 0.517285 4_2:-58783664 Msa0610860:CDS
AAGCAGATAAGGCAGTGAAA+TGG 0.524851 4_2:+58784564 None:intergenic
ATGATGGCAGAGGAACCCTT+TGG 0.528089 4_2:+58783123 None:intergenic
AGTGAAATGGCGAAGGAAAG+AGG 0.529083 4_2:+58784577 None:intergenic
CACTATAACCCATAATATAC+GGG 0.530664 4_2:+58783831 None:intergenic
ATCCTTTGGATCTAGGATTG+AGG 0.531154 4_2:-58783168 Msa0610860:three_prime_UTR
TGCATGGCAATGGGTACCAA+AGG 0.535403 4_2:-58783139 Msa0610860:three_prime_UTR
AGGATTGAGGCGTGTTTGCA+TGG 0.536799 4_2:-58783155 Msa0610860:three_prime_UTR
GAGGCGTGTTTGCATGGCAA+TGG 0.536826 4_2:-58783149 Msa0610860:three_prime_UTR
AGGCGTGTTTGCATGGCAAT+GGG 0.544451 4_2:-58783148 Msa0610860:three_prime_UTR
CACTACAAGAGAGTATTTGA+GGG 0.546905 4_2:+58784050 None:intergenic
TGCTATAACTAATAAGCCTA+GGG 0.547400 4_2:+58783942 None:intergenic
TAAAAGGCTTCGTCCTACTT+CGG 0.555828 4_2:-58783804 Msa0610860:CDS
CTAACAAGCCAAACTTCAAG+TGG 0.558319 4_2:+58783399 None:intergenic
GTGTTGAGACATTCAACCAT+TGG 0.559854 4_2:+58784118 None:intergenic
CGCCTCAATCCTAGATCCAA+AGG 0.566885 4_2:+58783166 None:intergenic
CACTGCCTTATCTGCTTCCG+CGG 0.567849 4_2:-58784558 Msa0610860:CDS
GCATGGCAATGGGTACCAAA+GGG 0.582818 4_2:-58783138 Msa0610860:three_prime_UTR
TTCGGAATTCTTTGGAACCG+AGG 0.584467 4_2:-58783592 Msa0610860:CDS
ATACGGAAGGTGCTCAACAT+CGG 0.595526 4_2:+58783274 None:intergenic
TCAAATACTCTCTTGTAGTG+TGG 0.603146 4_2:-58784047 Msa0610860:CDS
ATAGCAGATGCAACTTCATG+AGG 0.606629 4_2:+58784082 None:intergenic
TGTTAGCACAATTACCTGAA+GGG 0.608327 4_2:+58784530 None:intergenic
ACGACATGGGTATGATGGGT+CGG 0.608942 4_2:-58784674 None:intergenic
AGGACATACTTTGAGTAACT+AGG 0.611172 4_2:-58783375 Msa0610860:exon
CGGAAGGTGCTCAACATCGG+CGG 0.611725 4_2:+58783277 None:intergenic
CTAGTGTCTTATGATGGCAG+AGG 0.620381 4_2:+58783113 None:intergenic
AGGCCATGACGAAAGAAGCA+TGG 0.620961 4_2:+58783515 None:intergenic
ACACTCTTGATCAAAATAGG+AGG 0.622517 4_2:+58783614 None:intergenic
CCACCAAATCAACTATCTGC+CGG 0.624823 4_2:+58783645 None:intergenic
TAGCATTGAGACGAAGATGA+CGG 0.632455 4_2:-58783924 Msa0610860:CDS
GGCACAAGCTCTTAAAGCAG+AGG 0.635201 4_2:-58783472 Msa0610860:CDS
AGTGTTGGTCTTGATAAAGA+CGG 0.642183 4_2:-58783881 Msa0610860:CDS
TTACCTGAAGGGTTGTTCCG+CGG 0.642744 4_2:+58784541 None:intergenic
AGTAAAATGGAAACCAGTAG+CGG 0.644038 4_2:-58784367 Msa0610860:CDS
ACATCTCTACTCAAAATCGA+CGG 0.644998 4_2:+58783722 None:intergenic
ATAACAGCAGCAACATGATG+TGG 0.646285 4_2:-58784342 Msa0610860:CDS
ATAAGGCAGTGAAATGGCGA+AGG 0.654610 4_2:+58784570 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATCACAACAATTTTAATA+CGG + chr4_2:58784534-58784553 None:intergenic 15.0%
!!! AAATCACAACAATTTTAATA+CGG + chr4_2:58784534-58784553 None:intergenic 15.0%
!! AAGAAGAAGTAGAATATAAA+TGG + chr4_2:58783301-58783320 None:intergenic 20.0%
!! TTTACTCTACAAATTAATCA+TGG + chr4_2:58783407-58783426 None:intergenic 20.0%
!!! GATTAATTTGTAGAGTAAAA+TGG - chr4_2:58783408-58783427 Msa0610860:CDS 20.0%
!!! AAATTTTATTGTTAAACCCT+AGG - chr4_2:58783830-58783849 Msa0610860:CDS 20.0%
!! GATTGGAAAAATTATGATTA+AGG - chr4_2:58783933-58783952 Msa0610860:CDS 20.0%
!!! TATGATTTTTTAAAGAACTG+TGG - chr4_2:58784111-58784130 Msa0610860:CDS 20.0%
!! AAGAAGAAGTAGAATATAAA+TGG + chr4_2:58783301-58783320 None:intergenic 20.0%
!! TTTACTCTACAAATTAATCA+TGG + chr4_2:58783407-58783426 None:intergenic 20.0%
!!! GATTAATTTGTAGAGTAAAA+TGG - chr4_2:58783408-58783427 Msa0610860:CDS 20.0%
!!! AAATTTTATTGTTAAACCCT+AGG - chr4_2:58783830-58783849 Msa0610860:CDS 20.0%
!! GATTGGAAAAATTATGATTA+AGG - chr4_2:58783933-58783952 Msa0610860:CDS 20.0%
!!! TATGATTTTTTAAAGAACTG+TGG - chr4_2:58784111-58784130 Msa0610860:CDS 20.0%
! AAATGGAGAAATTAACGTAA+GGG + chr4_2:58783284-58783303 None:intergenic 25.0%
! TAAATGGAGAAATTAACGTA+AGG + chr4_2:58783285-58783304 None:intergenic 25.0%
!!! TGTGAACATTTTTTGTATGA+TGG + chr4_2:58783500-58783519 None:intergenic 25.0%
!!! TTGGCATTTTTTCAAACATT+AGG - chr4_2:58783784-58783803 Msa0610860:CDS 25.0%
!!! AATTTTCCCGATTTGTTTTT+CGG + chr4_2:58783815-58783834 None:intergenic 25.0%
! ACACTATAACCCATAATATA+CGG + chr4_2:58783961-58783980 None:intergenic 25.0%
!!! AAGTTTTTGGTAGATGTAAT+GGG - chr4_2:58784222-58784241 Msa0610860:CDS 25.0%
! TACGATAATAAGTTATCCTT+TGG - chr4_2:58784606-58784625 Msa0610860:intron 25.0%
! AAATGGAGAAATTAACGTAA+GGG + chr4_2:58783284-58783303 None:intergenic 25.0%
! TAAATGGAGAAATTAACGTA+AGG + chr4_2:58783285-58783304 None:intergenic 25.0%
!!! TGTGAACATTTTTTGTATGA+TGG + chr4_2:58783500-58783519 None:intergenic 25.0%
!!! TTGGCATTTTTTCAAACATT+AGG - chr4_2:58783784-58783803 Msa0610860:CDS 25.0%
!!! AATTTTCCCGATTTGTTTTT+CGG + chr4_2:58783815-58783834 None:intergenic 25.0%
! ACACTATAACCCATAATATA+CGG + chr4_2:58783961-58783980 None:intergenic 25.0%
!!! AAGTTTTTGGTAGATGTAAT+GGG - chr4_2:58784222-58784241 Msa0610860:CDS 25.0%
! TACGATAATAAGTTATCCTT+TGG - chr4_2:58784606-58784625 Msa0610860:intron 25.0%
! CAAATACTCCCAATTTTCAT+TGG + chr4_2:58783560-58783579 None:intergenic 30.0%
!! TGGGAGTATTTGAAAACAAT+TGG - chr4_2:58783568-58783587 Msa0610860:CDS 30.0%
! AGACCAAGTACAAGAATTTT+GGG + chr4_2:58783634-58783653 None:intergenic 30.0%
CAATGAAAAGATTGTTCCAA+TGG - chr4_2:58783654-58783673 Msa0610860:CDS 30.0%
GTTTGAAAAAATGCCAAAAG+AGG + chr4_2:58783781-58783800 None:intergenic 30.0%
!! ATTTTCCCGATTTGTTTTTC+GGG + chr4_2:58783814-58783833 None:intergenic 30.0%
TGCTATAACTAATAAGCCTA+GGG + chr4_2:58783849-58783868 None:intergenic 30.0%
ATGCTATAACTAATAAGCCT+AGG + chr4_2:58783850-58783869 None:intergenic 30.0%
ATTAAGGACCCGTATATTAT+GGG - chr4_2:58783949-58783968 Msa0610860:CDS 30.0%
CACTATAACCCATAATATAC+GGG + chr4_2:58783960-58783979 None:intergenic 30.0%
!! TGGGTTATAGTGTTGATAAA+AGG - chr4_2:58783968-58783987 Msa0610860:CDS 30.0%
TTAAAGAACTGTGGATTTCA+TGG - chr4_2:58784120-58784139 Msa0610860:CDS 30.0%
!!! CTATTTTGATCAAGAGTGTT+CGG - chr4_2:58784178-58784197 Msa0610860:CDS 30.0%
!!! CAAGTTTTTGGTAGATGTAA+TGG - chr4_2:58784221-58784240 Msa0610860:CDS 30.0%
!! CACAACAATTTTAATACGGA+AGG + chr4_2:58784530-58784549 None:intergenic 30.0%
ATAAGTTATCCTTTGGATCT+AGG - chr4_2:58784613-58784632 Msa0610860:intron 30.0%
! CAAATACTCCCAATTTTCAT+TGG + chr4_2:58783560-58783579 None:intergenic 30.0%
!! TGGGAGTATTTGAAAACAAT+TGG - chr4_2:58783568-58783587 Msa0610860:CDS 30.0%
! AGACCAAGTACAAGAATTTT+GGG + chr4_2:58783634-58783653 None:intergenic 30.0%
CAATGAAAAGATTGTTCCAA+TGG - chr4_2:58783654-58783673 Msa0610860:CDS 30.0%
GTTTGAAAAAATGCCAAAAG+AGG + chr4_2:58783781-58783800 None:intergenic 30.0%
!! ATTTTCCCGATTTGTTTTTC+GGG + chr4_2:58783814-58783833 None:intergenic 30.0%
TGCTATAACTAATAAGCCTA+GGG + chr4_2:58783849-58783868 None:intergenic 30.0%
ATGCTATAACTAATAAGCCT+AGG + chr4_2:58783850-58783869 None:intergenic 30.0%
ATTAAGGACCCGTATATTAT+GGG - chr4_2:58783949-58783968 Msa0610860:CDS 30.0%
CACTATAACCCATAATATAC+GGG + chr4_2:58783960-58783979 None:intergenic 30.0%
!! TGGGTTATAGTGTTGATAAA+AGG - chr4_2:58783968-58783987 Msa0610860:CDS 30.0%
TTAAAGAACTGTGGATTTCA+TGG - chr4_2:58784120-58784139 Msa0610860:CDS 30.0%
!!! CTATTTTGATCAAGAGTGTT+CGG - chr4_2:58784178-58784197 Msa0610860:CDS 30.0%
!!! CAAGTTTTTGGTAGATGTAA+TGG - chr4_2:58784221-58784240 Msa0610860:CDS 30.0%
!! CACAACAATTTTAATACGGA+AGG + chr4_2:58784530-58784549 None:intergenic 30.0%
ATAAGTTATCCTTTGGATCT+AGG - chr4_2:58784613-58784632 Msa0610860:intron 30.0%
TGTTAGCACAATTACCTGAA+GGG + chr4_2:58783261-58783280 None:intergenic 35.0%
AGTAAAATGGAAACCAGTAG+CGG - chr4_2:58783421-58783440 Msa0610860:CDS 35.0%
! CAACATGATGTGGTTTTTCA+AGG - chr4_2:58783456-58783475 Msa0610860:CDS 35.0%
!!! GGGCATTTTGAAACAATTGA+AGG + chr4_2:58783613-58783632 None:intergenic 35.0%
! GACCAAGTACAAGAATTTTG+GGG + chr4_2:58783633-58783652 None:intergenic 35.0%
! GAGACCAAGTACAAGAATTT+TGG + chr4_2:58783635-58783654 None:intergenic 35.0%
!! CACTACAAGAGAGTATTTGA+GGG + chr4_2:58783741-58783760 None:intergenic 35.0%
!! ACACTACAAGAGAGTATTTG+AGG + chr4_2:58783742-58783761 None:intergenic 35.0%
TCAAATACTCTCTTGTAGTG+TGG - chr4_2:58783741-58783760 Msa0610860:CDS 35.0%
GTGAAATTTCTTGCTAGTGT+TGG - chr4_2:58783892-58783911 Msa0610860:CDS 35.0%
!! AGTGTTGGTCTTGATAAAGA+CGG - chr4_2:58783907-58783926 Msa0610860:CDS 35.0%
CTTGATAAAGACGGAATGAT+TGG - chr4_2:58783916-58783935 Msa0610860:CDS 35.0%
GATTAAGGACCCGTATATTA+TGG - chr4_2:58783948-58783967 Msa0610860:CDS 35.0%
ACATCTCTACTCAAAATCGA+CGG + chr4_2:58784069-58784088 None:intergenic 35.0%
TTTGAGTAGAGATGTGGATA+AGG - chr4_2:58784074-58784093 Msa0610860:CDS 35.0%
! TAGAGATGTGGATAAGGTTT+TGG - chr4_2:58784080-58784099 Msa0610860:CDS 35.0%
ACACTCTTGATCAAAATAGG+AGG + chr4_2:58784177-58784196 None:intergenic 35.0%
CGAACACTCTTGATCAAAAT+AGG + chr4_2:58784180-58784199 None:intergenic 35.0%
TCTACCAAAAACTTGATCCT+CGG + chr4_2:58784216-58784235 None:intergenic 35.0%
TCATGGCCTGAAGAAAAAAT+TGG - chr4_2:58784287-58784306 Msa0610860:CDS 35.0%
!! TGAAGAAAAAATTGGTGTCG+CGG - chr4_2:58784295-58784314 Msa0610860:CDS 35.0%
AAGAAGTTCCACTTGAAGTT+TGG - chr4_2:58784381-58784400 Msa0610860:intron 35.0%
!! TTGAAGTTTGGCTTGTTAGA+AGG - chr4_2:58784393-58784412 Msa0610860:intron 35.0%
AGGACATACTTTGAGTAACT+AGG - chr4_2:58784413-58784432 Msa0610860:intron 35.0%
TGTTAGCACAATTACCTGAA+GGG + chr4_2:58783261-58783280 None:intergenic 35.0%
AGTAAAATGGAAACCAGTAG+CGG - chr4_2:58783421-58783440 Msa0610860:CDS 35.0%
! CAACATGATGTGGTTTTTCA+AGG - chr4_2:58783456-58783475 Msa0610860:CDS 35.0%
!!! GGGCATTTTGAAACAATTGA+AGG + chr4_2:58783613-58783632 None:intergenic 35.0%
! GACCAAGTACAAGAATTTTG+GGG + chr4_2:58783633-58783652 None:intergenic 35.0%
! GAGACCAAGTACAAGAATTT+TGG + chr4_2:58783635-58783654 None:intergenic 35.0%
!! CACTACAAGAGAGTATTTGA+GGG + chr4_2:58783741-58783760 None:intergenic 35.0%
!! ACACTACAAGAGAGTATTTG+AGG + chr4_2:58783742-58783761 None:intergenic 35.0%
TCAAATACTCTCTTGTAGTG+TGG - chr4_2:58783741-58783760 Msa0610860:CDS 35.0%
GTGAAATTTCTTGCTAGTGT+TGG - chr4_2:58783892-58783911 Msa0610860:CDS 35.0%
!! AGTGTTGGTCTTGATAAAGA+CGG - chr4_2:58783907-58783926 Msa0610860:CDS 35.0%
CTTGATAAAGACGGAATGAT+TGG - chr4_2:58783916-58783935 Msa0610860:CDS 35.0%
GATTAAGGACCCGTATATTA+TGG - chr4_2:58783948-58783967 Msa0610860:CDS 35.0%
ACATCTCTACTCAAAATCGA+CGG + chr4_2:58784069-58784088 None:intergenic 35.0%
TTTGAGTAGAGATGTGGATA+AGG - chr4_2:58784074-58784093 Msa0610860:CDS 35.0%
! TAGAGATGTGGATAAGGTTT+TGG - chr4_2:58784080-58784099 Msa0610860:CDS 35.0%
ACACTCTTGATCAAAATAGG+AGG + chr4_2:58784177-58784196 None:intergenic 35.0%
CGAACACTCTTGATCAAAAT+AGG + chr4_2:58784180-58784199 None:intergenic 35.0%
TCTACCAAAAACTTGATCCT+CGG + chr4_2:58784216-58784235 None:intergenic 35.0%
TCATGGCCTGAAGAAAAAAT+TGG - chr4_2:58784287-58784306 Msa0610860:CDS 35.0%
!! TGAAGAAAAAATTGGTGTCG+CGG - chr4_2:58784295-58784314 Msa0610860:CDS 35.0%
AAGAAGTTCCACTTGAAGTT+TGG - chr4_2:58784381-58784400 Msa0610860:intron 35.0%
!! TTGAAGTTTGGCTTGTTAGA+AGG - chr4_2:58784393-58784412 Msa0610860:intron 35.0%
AGGACATACTTTGAGTAACT+AGG - chr4_2:58784413-58784432 Msa0610860:intron 35.0%
AACTGAAGAAGAAGACAGCA+TGG + chr4_2:58783170-58783189 None:intergenic 40.0%
AAGCAGATAAGGCAGTGAAA+TGG + chr4_2:58783227-58783246 None:intergenic 40.0%
GTGTTAGCACAATTACCTGA+AGG + chr4_2:58783262-58783281 None:intergenic 40.0%
ATAACAGCAGCAACATGATG+TGG - chr4_2:58783446-58783465 Msa0610860:CDS 40.0%
!!! ATGTGGTTTTTCAAGGACAG+AGG - chr4_2:58783463-58783482 Msa0610860:CDS 40.0%
CGAACGAGCCAATGAAAATT+GGG - chr4_2:58783549-58783568 Msa0610860:CDS 40.0%
TGCCCCAAAATTCTTGTACT+TGG - chr4_2:58783628-58783647 Msa0610860:CDS 40.0%
GTGTTGAGACATTCAACCAT+TGG + chr4_2:58783673-58783692 None:intergenic 40.0%
ATAGCAGATGCAACTTCATG+AGG + chr4_2:58783709-58783728 None:intergenic 40.0%
!! AGAGAAGCTTTGTCCTCTTT+TGG - chr4_2:58783765-58783784 Msa0610860:CDS 40.0%
! TAGCATTGAGACGAAGATGA+CGG - chr4_2:58783864-58783883 Msa0610860:CDS 40.0%
TAAAAGGCTTCGTCCTACTT+CGG - chr4_2:58783984-58784003 Msa0610860:CDS 40.0%
GACTTCAAAAACTCCGAAGT+AGG + chr4_2:58784000-58784019 None:intergenic 40.0%
!!! TCGGAGTTTTTGAAGTCGAT+AGG - chr4_2:58784003-58784022 Msa0610860:CDS 40.0%
!! GTCGATTTTGAGTAGAGATG+TGG - chr4_2:58784068-58784087 Msa0610860:CDS 40.0%
!! CAGATAGTTGATTTGGTGGT+TGG - chr4_2:58784147-58784166 Msa0610860:CDS 40.0%
!! CAAGAGTGTTCGGAATTCTT+TGG - chr4_2:58784188-58784207 Msa0610860:CDS 40.0%
TATCCATGCTTCTTTCGTCA+TGG - chr4_2:58784270-58784289 Msa0610860:CDS 40.0%
!!! GCGACACCAATTTTTTCTTC+AGG + chr4_2:58784296-58784315 None:intergenic 40.0%
CTAACAAGCCAAACTTCAAG+TGG + chr4_2:58784392-58784411 None:intergenic 40.0%
! ATCCTTTGGATCTAGGATTG+AGG - chr4_2:58784620-58784639 Msa0610860:intron 40.0%
TATAGATTCTTACCGACCCA+TGG + chr4_2:58783129-58783148 None:intergenic 40.0%
AACTGAAGAAGAAGACAGCA+TGG + chr4_2:58783170-58783189 None:intergenic 40.0%
AAGCAGATAAGGCAGTGAAA+TGG + chr4_2:58783227-58783246 None:intergenic 40.0%
GTGTTAGCACAATTACCTGA+AGG + chr4_2:58783262-58783281 None:intergenic 40.0%
ATAACAGCAGCAACATGATG+TGG - chr4_2:58783446-58783465 Msa0610860:CDS 40.0%
!!! ATGTGGTTTTTCAAGGACAG+AGG - chr4_2:58783463-58783482 Msa0610860:CDS 40.0%
CGAACGAGCCAATGAAAATT+GGG - chr4_2:58783549-58783568 Msa0610860:CDS 40.0%
TGCCCCAAAATTCTTGTACT+TGG - chr4_2:58783628-58783647 Msa0610860:CDS 40.0%
GTGTTGAGACATTCAACCAT+TGG + chr4_2:58783673-58783692 None:intergenic 40.0%
ATAGCAGATGCAACTTCATG+AGG + chr4_2:58783709-58783728 None:intergenic 40.0%
!! AGAGAAGCTTTGTCCTCTTT+TGG - chr4_2:58783765-58783784 Msa0610860:CDS 40.0%
! TAGCATTGAGACGAAGATGA+CGG - chr4_2:58783864-58783883 Msa0610860:CDS 40.0%
TAAAAGGCTTCGTCCTACTT+CGG - chr4_2:58783984-58784003 Msa0610860:CDS 40.0%
GACTTCAAAAACTCCGAAGT+AGG + chr4_2:58784000-58784019 None:intergenic 40.0%
!!! TCGGAGTTTTTGAAGTCGAT+AGG - chr4_2:58784003-58784022 Msa0610860:CDS 40.0%
!! GTCGATTTTGAGTAGAGATG+TGG - chr4_2:58784068-58784087 Msa0610860:CDS 40.0%
!! CAGATAGTTGATTTGGTGGT+TGG - chr4_2:58784147-58784166 Msa0610860:CDS 40.0%
!! CAAGAGTGTTCGGAATTCTT+TGG - chr4_2:58784188-58784207 Msa0610860:CDS 40.0%
TATCCATGCTTCTTTCGTCA+TGG - chr4_2:58784270-58784289 Msa0610860:CDS 40.0%
!!! GCGACACCAATTTTTTCTTC+AGG + chr4_2:58784296-58784315 None:intergenic 40.0%
CTAACAAGCCAAACTTCAAG+TGG + chr4_2:58784392-58784411 None:intergenic 40.0%
! ATCCTTTGGATCTAGGATTG+AGG - chr4_2:58784620-58784639 Msa0610860:intron 40.0%
GAAGAAGAAGACAGCATGGA+TGG + chr4_2:58783166-58783185 None:intergenic 45.0%
AGTGAAATGGCGAAGGAAAG+AGG + chr4_2:58783214-58783233 None:intergenic 45.0%
ATAAGGCAGTGAAATGGCGA+AGG + chr4_2:58783221-58783240 None:intergenic 45.0%
GCGAACGAGCCAATGAAAAT+TGG - chr4_2:58783548-58783567 Msa0610860:CDS 45.0%
GGTGTGCCCGAAAAACAAAT+CGG - chr4_2:58783805-58783824 Msa0610860:CDS 45.0%
GTGTGCCCGAAAAACAAATC+GGG - chr4_2:58783806-58783825 Msa0610860:CDS 45.0%
TTTGACTGAGCAGGATCTTC+AGG - chr4_2:58784026-58784045 Msa0610860:CDS 45.0%
AGAACTGTGGATTTCATGGC+CGG - chr4_2:58784124-58784143 Msa0610860:CDS 45.0%
CCACCAAATCAACTATCTGC+CGG + chr4_2:58784146-58784165 None:intergenic 45.0%
!! TTCGGAATTCTTTGGAACCG+AGG - chr4_2:58784196-58784215 Msa0610860:CDS 45.0%
! GGAACCGAGGATCAAGTTTT+TGG - chr4_2:58784209-58784228 Msa0610860:CDS 45.0%
TTGCAGCTTGAGTGAAATGC+TGG - chr4_2:58784347-58784366 Msa0610860:CDS 45.0%
!! ATACGGAAGGTGCTCAACAT+CGG + chr4_2:58784517-58784536 None:intergenic 45.0%
GAAGAAGAAGACAGCATGGA+TGG + chr4_2:58783166-58783185 None:intergenic 45.0%
AGTGAAATGGCGAAGGAAAG+AGG + chr4_2:58783214-58783233 None:intergenic 45.0%
ATAAGGCAGTGAAATGGCGA+AGG + chr4_2:58783221-58783240 None:intergenic 45.0%
GCGAACGAGCCAATGAAAAT+TGG - chr4_2:58783548-58783567 Msa0610860:CDS 45.0%
GGTGTGCCCGAAAAACAAAT+CGG - chr4_2:58783805-58783824 Msa0610860:CDS 45.0%
GTGTGCCCGAAAAACAAATC+GGG - chr4_2:58783806-58783825 Msa0610860:CDS 45.0%
TTTGACTGAGCAGGATCTTC+AGG - chr4_2:58784026-58784045 Msa0610860:CDS 45.0%
AGAACTGTGGATTTCATGGC+CGG - chr4_2:58784124-58784143 Msa0610860:CDS 45.0%
CCACCAAATCAACTATCTGC+CGG + chr4_2:58784146-58784165 None:intergenic 45.0%
!! TTCGGAATTCTTTGGAACCG+AGG - chr4_2:58784196-58784215 Msa0610860:CDS 45.0%
! GGAACCGAGGATCAAGTTTT+TGG - chr4_2:58784209-58784228 Msa0610860:CDS 45.0%
TTGCAGCTTGAGTGAAATGC+TGG - chr4_2:58784347-58784366 Msa0610860:CDS 45.0%
!! ATACGGAAGGTGCTCAACAT+CGG + chr4_2:58784517-58784536 None:intergenic 45.0%
AGACAGCATGGATGGAGAAG+AGG + chr4_2:58783158-58783177 None:intergenic 50.0%
TTGTTCCGCGGAAGCAGATA+AGG + chr4_2:58783238-58783257 None:intergenic 50.0%
TTACCTGAAGGGTTGTTCCG+CGG + chr4_2:58783250-58783269 None:intergenic 50.0%
GTCGATAGGTTTGACTGAGC+AGG - chr4_2:58784017-58784036 Msa0610860:CDS 50.0%
TGGCCGGCAGATAGTTGATT+TGG - chr4_2:58784140-58784159 Msa0610860:CDS 50.0%
!! CCGGCAGATAGTTGATTTGG+TGG - chr4_2:58784143-58784162 Msa0610860:CDS 50.0%
AGGCCATGACGAAAGAAGCA+TGG + chr4_2:58784276-58784295 None:intergenic 50.0%
GGCACAAGCTCTTAAAGCAG+AGG - chr4_2:58784316-58784335 Msa0610860:CDS 50.0%
CGCCTCAATCCTAGATCCAA+AGG + chr4_2:58784625-58784644 None:intergenic 50.0%
AGGATTGAGGCGTGTTTGCA+TGG - chr4_2:58784633-58784652 Msa0610860:intron 50.0%
AGGCGTGTTTGCATGGCAAT+GGG - chr4_2:58784640-58784659 Msa0610860:intron 50.0%
TGCATGGCAATGGGTACCAA+AGG - chr4_2:58784649-58784668 Msa0610860:intron 50.0%
GCATGGCAATGGGTACCAAA+GGG - chr4_2:58784650-58784669 Msa0610860:intron 50.0%
AGACAGCATGGATGGAGAAG+AGG + chr4_2:58783158-58783177 None:intergenic 50.0%
TTGTTCCGCGGAAGCAGATA+AGG + chr4_2:58783238-58783257 None:intergenic 50.0%
TTACCTGAAGGGTTGTTCCG+CGG + chr4_2:58783250-58783269 None:intergenic 50.0%
GTCGATAGGTTTGACTGAGC+AGG - chr4_2:58784017-58784036 Msa0610860:CDS 50.0%
TGGCCGGCAGATAGTTGATT+TGG - chr4_2:58784140-58784159 Msa0610860:CDS 50.0%
!! CCGGCAGATAGTTGATTTGG+TGG - chr4_2:58784143-58784162 Msa0610860:CDS 50.0%
AGGCCATGACGAAAGAAGCA+TGG + chr4_2:58784276-58784295 None:intergenic 50.0%
GGCACAAGCTCTTAAAGCAG+AGG - chr4_2:58784316-58784335 Msa0610860:CDS 50.0%
CGCCTCAATCCTAGATCCAA+AGG + chr4_2:58784625-58784644 None:intergenic 50.0%
AGGATTGAGGCGTGTTTGCA+TGG - chr4_2:58784633-58784652 Msa0610860:intron 50.0%
AGGCGTGTTTGCATGGCAAT+GGG - chr4_2:58784640-58784659 Msa0610860:intron 50.0%
TGCATGGCAATGGGTACCAA+AGG - chr4_2:58784649-58784668 Msa0610860:intron 50.0%
GCATGGCAATGGGTACCAAA+GGG - chr4_2:58784650-58784669 Msa0610860:intron 50.0%
CACTGCCTTATCTGCTTCCG+CGG - chr4_2:58783230-58783249 Msa0610860:three_prime_UTR 55.0%
GCTGCTGTTATTGCCGCTAC+TGG + chr4_2:58783437-58783456 None:intergenic 55.0%
GAGGCGTGTTTGCATGGCAA+TGG - chr4_2:58784639-58784658 Msa0610860:intron 55.0%
CACTGCCTTATCTGCTTCCG+CGG - chr4_2:58783230-58783249 Msa0610860:three_prime_UTR 55.0%
GCTGCTGTTATTGCCGCTAC+TGG + chr4_2:58783437-58783456 None:intergenic 55.0%
GAGGCGTGTTTGCATGGCAA+TGG - chr4_2:58784639-58784658 Msa0610860:intron 55.0%
CTTCCGCGGAACAACCCTTC+AGG - chr4_2:58783244-58783263 Msa0610860:three_prime_UTR 60.0%
!! CGGAAGGTGCTCAACATCGG+CGG + chr4_2:58784514-58784533 None:intergenic 60.0%
CTTCCGCGGAACAACCCTTC+AGG - chr4_2:58783244-58783263 Msa0610860:three_prime_UTR 60.0%
!! CGGAAGGTGCTCAACATCGG+CGG + chr4_2:58784514-58784533 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 58783128 58784682 58783128 ID=Msa0610860;Name=Msa0610860
chr4_2 mRNA 58783128 58784682 58783128 ID=Msa0610860-mRNA-1;Parent=Msa0610860;Name=Msa0610860-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0.5|0.33|0.66|0|0.33|3|248|360
chr4_2 exon 58783128 58784389 58783128 ID=Msa0610860-mRNA-1:exon:15485;Parent=Msa0610860-mRNA-1
chr4_2 exon 58784545 58784605 58784545 ID=Msa0610860-mRNA-1:exon:15484;Parent=Msa0610860-mRNA-1
chr4_2 exon 58784675 58784682 58784675 ID=Msa0610860-mRNA-1:exon:15483;Parent=Msa0610860-mRNA-1
chr4_2 CDS 58784675 58784682 58784675 ID=Msa0610860-mRNA-1:cds;Parent=Msa0610860-mRNA-1
chr4_2 CDS 58784545 58784605 58784545 ID=Msa0610860-mRNA-1:cds;Parent=Msa0610860-mRNA-1
chr4_2 CDS 58783376 58784389 58783376 ID=Msa0610860-mRNA-1:cds;Parent=Msa0610860-mRNA-1
chr4_2 three_prime_UTR 58783128 58783375 58783128 ID=Msa0610860-mRNA-1:three_prime_utr;Parent=Msa0610860-mRNA-1
Gene Sequence

>Msa0610860

ATGGGTCGTGAACTCCTCTTTCCTTCGCCATTTCACTGCCTTATCTGCTTCCGCGGAACAACCCTTCAGAGTAAAATGGAAACCAGTAGCGGCAATAACAGCAGCAACATGATGTGGTTTTTCAAGGACAGAGGCTTTGATGATACCATCATACAAAAAATGTTCACAAAATGCAAGCGTCTCGAAACAGCGCATCGCGAACGAGCCAATGAAAATTGGGAGTATTTGAAAACAATTGGTATTCAAGAAAGAAAACTTCCTTCAATTGTTTCAAAATGCCCCAAAATTCTTGTACTTGGTCTCAATGAAAAGATTGTTCCAATGGTTGAATGTCTCAACACACTTGCAACTAAGCCTCATGAAGTTGCATCTGCTATAGCTAAGTTCCCTCAAATACTCTCTTGTAGTGTGGAAGAGAAGCTTTGTCCTCTTTTGGCATTTTTTCAAACATTAGGTGTGCCCGAAAAACAAATCGGGAAAATTTTATTGTTAAACCCTAGGCTTATTAGTTATAGCATTGAGACGAAGATGACGGAAATTGTGAAATTTCTTGCTAGTGTTGGTCTTGATAAAGACGGAATGATTGGAAAAATTATGATTAAGGACCCGTATATTATGGGTTATAGTGTTGATAAAAGGCTTCGTCCTACTTCGGAGTTTTTGAAGTCGATAGGTTTGACTGAGCAGGATCTTCAGGTATTAGCGTTGAACTTTCCGTCGATTTTGAGTAGAGATGTGGATAAGGTTTTGGTACACAATTATGATTTTTTAAAGAACTGTGGATTTCATGGCCGGCAGATAGTTGATTTGGTGGTTGGTTATCCTCCTATTTTGATCAAGAGTGTTCGGAATTCTTTGGAACCGAGGATCAAGTTTTTGGTAGATGTAATGGGAAGAGAAGTTGATGAAATTATTGATTATCCATGCTTCTTTCGTCATGGCCTGAAGAAAAAATTGGTGTCGCGGCACAAGCTCTTAAAGCAGAGGAATTTAAATTGCAGCTTGAGTGAAATGCTGGACTGTAATGAGAAGAAGTTCCACTTGAAGTTTGGCTTGTTAGAAGGACATACTTTGAGTAACTAG

Protein sequence

>Msa0610860

MGRELLFPSPFHCLICFRGTTLQSKMETSSGNNSSNMMWFFKDRGFDDTIIQKMFTKCKRLETAHRERANENWEYLKTIGIQERKLPSIVSKCPKILVLGLNEKIVPMVECLNTLATKPHEVASAIAKFPQILSCSVEEKLCPLLAFFQTLGVPEKQIGKILLLNPRLISYSIETKMTEIVKFLASVGLDKDGMIGKIMIKDPYIMGYSVDKRLRPTSEFLKSIGLTEQDLQVLALNFPSILSRDVDKVLVHNYDFLKNCGFHGRQIVDLVVGYPPILIKSVRNSLEPRIKFLVDVMGREVDEIIDYPCFFRHGLKKKLVSRHKLLKQRNLNCSLSEMLDCNEKKFHLKFGLLEGHTLSN*