AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0257130


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0257130 MtrunA17_Chr2g0319111 96.907 194 6 0 1 194 1 194 6.34e-139 385
Msa0257130 MtrunA17_Chr1g0169641 37.500 88 54 1 76 163 18 104 7.07e-12 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0257130 AT5G54600.1 72.941 170 45 1 25 193 24 193 2.04e-87 256
Msa0257130 AT5G54600.2 64.118 170 41 2 25 193 24 174 3.54e-70 211
Msa0257130 AT5G23535.2 36.170 94 59 1 76 169 18 110 8.45e-12 61.2
Msa0257130 AT5G23535.1 36.170 94 59 1 76 169 18 110 8.45e-12 61.2

Find 55 sgRNAs with CRISPR-Local

Find 195 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTGCTTCTGATAATGATTT+TGG 0.110324 2_2:-52865238 None:intergenic
CTCTCTTCCAACTCATTCTT+TGG 0.139458 2_2:+52865346 Msa0257130:CDS
TCTCCATACACAACTTTAAT+TGG 0.153547 2_2:+52868546 Msa0257130:three_prime_UTR
ATATACACTTAACAATAAAA+TGG 0.212660 2_2:-52868490 None:intergenic
GCTACCATTGTTGTTGTAAC+AGG 0.241999 2_2:-52865280 None:intergenic
ATTATGTTGTGTTATTGTTT+TGG 0.299061 2_2:+52868511 Msa0257130:three_prime_UTR
TGCCTTGAATTTCAGATTGA+AGG 0.327357 2_2:+52868209 Msa0257130:intron
AGAAGAGGAGAGAGAGTGAT+TGG 0.353077 2_2:-52865382 None:intergenic
AGTAGAGAAGAGGGAGAACC+AGG 0.356106 2_2:+52867869 Msa0257130:CDS
CACTCTCTCTCCTCTTCTTC+CGG 0.363993 2_2:+52865387 Msa0257130:CDS
CACAAATTGCATGTTAAAGT+TGG 0.369050 2_2:+52867725 Msa0257130:CDS
TGATTGATAGTGTAGAGAAT+TGG 0.369373 2_2:+52868351 Msa0257130:CDS
AGAACCAGGGCAAATAAATA+AGG 0.386690 2_2:+52867883 Msa0257130:CDS
TAGAAGTAATATATTGAAGT+TGG 0.421672 2_2:-52868729 None:intergenic
TGTAACACTGGAAGGCTGTT+TGG 0.423940 2_2:-52867704 None:intergenic
AGTCATATCAGGACATGAAA+AGG 0.426998 2_2:+52867760 Msa0257130:CDS
GATACTGTGAAAGTCATATC+AGG 0.429641 2_2:+52867749 Msa0257130:CDS
AACTCTCAATGTAGACTTGT+CGG 0.435195 2_2:+52868639 Msa0257130:three_prime_UTR
AATCCAATTAAAGTTGTGTA+TGG 0.440174 2_2:-52868549 None:intergenic
TATACACTTAACAATAAAAT+GGG 0.446260 2_2:-52868489 None:intergenic
GACATGAAAAGGGTCAAGTC+GGG 0.450856 2_2:+52867771 Msa0257130:CDS
GAGAGAGTGATTGGAGAGAG+AGG 0.456033 2_2:-52865373 None:intergenic
CATGTGAAGAGTAGAGAAGA+GGG 0.464629 2_2:+52867860 Msa0257130:CDS
ATACGACATTGCTTATCTGT+TGG 0.479855 2_2:-52867332 None:intergenic
ATAATCAAAACATCCTTTGT+CGG 0.484825 2_2:-52868667 None:intergenic
ATCACATTTGAACTGTGAAT+AGG 0.485672 2_2:-52868233 None:intergenic
GAAGCAGAAGCAAGAAGAAG+AGG 0.501532 2_2:+52865253 Msa0257130:five_prime_UTR
ATAACCTTATTTATTTGCCC+TGG 0.506533 2_2:-52867887 None:intergenic
GTCATATCAGGACATGAAAA+GGG 0.526144 2_2:+52867761 Msa0257130:CDS
GTTGGAAGAGAGTGAGAGTG+AGG 0.526757 2_2:-52865335 None:intergenic
AACAATGGTAGCTATGGCTA+TGG 0.541534 2_2:+52865291 Msa0257130:exon
AGCAATGTCGTATTGTAATG+AGG 0.546477 2_2:+52867342 Msa0257130:CDS
TACAACAACAATGGTAGCTA+TGG 0.546953 2_2:+52865285 Msa0257130:exon
ACATGCAATTTGTGTAACAC+TGG 0.551056 2_2:-52867716 None:intergenic
GAATGAAGTACCGGAAGAAG+AGG 0.551661 2_2:-52865397 None:intergenic
GGACATGAAAAGGGTCAAGT+CGG 0.554119 2_2:+52867770 Msa0257130:CDS
TGAATTAATATAGTAAAACT+AGG 0.562139 2_2:-52868420 None:intergenic
TTTCTGGTAGCTTAAACGAT+GGG 0.563960 2_2:+52867664 Msa0257130:intron
GCAATGTCGTATTGTAATGA+GGG 0.573580 2_2:+52867343 Msa0257130:CDS
CAAGAACTTTATGACCTACA+CGG 0.580646 2_2:-52868286 None:intergenic
AAGAATGTCGCAAGCCGTGT+AGG 0.582151 2_2:+52868272 Msa0257130:CDS
CTACCATTGTTGTTGTAACA+GGG 0.586494 2_2:-52865279 None:intergenic
TCAAAACATCCTTTGTCGGA+AGG 0.589800 2_2:-52868663 None:intergenic
CTTGTCGGTCCTTCCGACAA+AGG 0.592601 2_2:+52868654 Msa0257130:three_prime_UTR
GCATGTGAAGAGTAGAGAAG+AGG 0.595956 2_2:+52867859 Msa0257130:CDS
AGGCTGTCCAAAGAATGAGT+TGG 0.596353 2_2:-52865353 None:intergenic
GTAGAGAAGAGGGAGAACCA+GGG 0.600154 2_2:+52867870 Msa0257130:CDS
GGTCATAAAGTTCTTGACAA+TGG 0.600337 2_2:+52868293 Msa0257130:CDS
ACATGAAAAGGGTCAAGTCG+GGG 0.610466 2_2:+52867772 Msa0257130:CDS
GCTTAAACGATGGGAGCGAA+AGG 0.614072 2_2:+52867673 Msa0257130:intron
TTGTGTATGGAGATCAACAT+AGG 0.615289 2_2:-52868536 None:intergenic
AGAGAATTGGAAGAAACTGA+AGG 0.625300 2_2:+52868364 Msa0257130:CDS
GCAATTTGTGTAACACTGGA+AGG 0.648985 2_2:-52867712 None:intergenic
TTACCCTGTTACAACAACAA+TGG 0.689972 2_2:+52865276 Msa0257130:exon
TGAAAAGGGTCAAGTCGGGG+AGG 0.705204 2_2:+52867775 Msa0257130:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTCAATTTTTATTATTCT+CGG + chr2_2:52865469-52865488 Msa0257130:intron 10.0%
!!! TAAATCTATATTGTTTTTAT+TGG + chr2_2:52867293-52867312 Msa0257130:intron 10.0%
!! ATAAAATTAAAGAAATTGTA+AGG - chr2_2:52867537-52867556 None:intergenic 10.0%
!!! ATTTTCTAATTTTATTCACA+TGG + chr2_2:52865497-52865516 Msa0257130:intron 15.0%
!!! TTTTCTAATTTTATTCACAT+GGG + chr2_2:52865498-52865517 Msa0257130:intron 15.0%
!!! TATTTTTCTAATTAGAATTG+TGG + chr2_2:52865579-52865598 Msa0257130:intron 15.0%
!! AATGTGAAAATATTGATAAA+AGG + chr2_2:52866035-52866054 Msa0257130:intron 15.0%
!! AAAATAAACTCAAAATTTGT+AGG - chr2_2:52866209-52866228 None:intergenic 15.0%
!!! TTTGTGTTTTTTTTTTATAG+AGG - chr2_2:52866707-52866726 None:intergenic 15.0%
!!! TTCATAATAATGTTTTTTTC+TGG - chr2_2:52867927-52867946 None:intergenic 15.0%
!! TGAATTAATATAGTAAAACT+AGG - chr2_2:52868423-52868442 None:intergenic 15.0%
!! TATACACTTAACAATAAAAT+GGG - chr2_2:52868492-52868511 None:intergenic 15.0%
!! ATATACACTTAACAATAAAA+TGG - chr2_2:52868493-52868512 None:intergenic 15.0%
!! TATCATCTTCATAAAATTAG+TGG + chr2_2:52865634-52865653 Msa0257130:intron 20.0%
!! AGTCAATTATATATAACGAA+AGG - chr2_2:52867011-52867030 None:intergenic 20.0%
!!! TATTTCACATAACAGATTTT+TGG + chr2_2:52867086-52867105 Msa0257130:intron 20.0%
!! CTGAAAAGAATAATCATATT+AGG - chr2_2:52867397-52867416 None:intergenic 20.0%
!!! ATAATGTTTTTTTCTGGTAA+GGG - chr2_2:52867921-52867940 None:intergenic 20.0%
!!! AATAATGTTTTTTTCTGGTA+AGG - chr2_2:52867922-52867941 None:intergenic 20.0%
!!! ATTATGTTGTGTTATTGTTT+TGG + chr2_2:52868511-52868530 Msa0257130:three_prime_UTR 20.0%
!!! AATCTTCAAAATACCATTTT+TGG + chr2_2:52868694-52868713 Msa0257130:three_prime_UTR 20.0%
!!! TTTTAAGAGTCTAAGTTCAT+GGG + chr2_2:52865539-52865558 Msa0257130:intron 25.0%
! TGTTCATGTTTCGAATTATA+TGG + chr2_2:52865693-52865712 Msa0257130:intron 25.0%
! AAGAAAATGAATCACATACA+CGG - chr2_2:52865812-52865831 None:intergenic 25.0%
!!! AGACAATCACAAATTTTGAT+AGG + chr2_2:52865960-52865979 Msa0257130:intron 25.0%
! AAAGATAAGGAAACAAGATT+GGG - chr2_2:52866379-52866398 None:intergenic 25.0%
! AAAAGATAAGGAAACAAGAT+TGG - chr2_2:52866380-52866399 None:intergenic 25.0%
! TTAGAGATAGACACAAATTA+TGG + chr2_2:52866422-52866441 Msa0257130:intron 25.0%
!!! TTGATCTTCTCTCTAAAATT+TGG - chr2_2:52866482-52866501 None:intergenic 25.0%
!!! CATACCCTTTTTTATTTGTA+CGG + chr2_2:52866979-52866998 Msa0257130:intron 25.0%
! TGTTCCGTACAAATAAAAAA+GGG - chr2_2:52866986-52867005 None:intergenic 25.0%
! ATGTTCCGTACAAATAAAAA+AGG - chr2_2:52866987-52867006 None:intergenic 25.0%
! AAGAATAATCATATTAGGCA+TGG - chr2_2:52867392-52867411 None:intergenic 25.0%
! AAAAAACATTTCTTTGCTCT+CGG - chr2_2:52867468-52867487 None:intergenic 25.0%
!! ATTACACAAGACATTTTATG+AGG - chr2_2:52867624-52867643 None:intergenic 25.0%
! GAAGGAGAATGTTATATAAT+AGG - chr2_2:52867978-52867997 None:intergenic 25.0%
!!! GTGTATGATGTTTGTTTTTT+CGG + chr2_2:52868146-52868165 Msa0257130:intron 25.0%
! GTTCGCTATTTAATAAAAAC+TGG + chr2_2:52868323-52868342 Msa0257130:CDS 25.0%
! CTATTTAATAAAAACTGGAG+AGG + chr2_2:52868328-52868347 Msa0257130:CDS 25.0%
! AATCCAATTAAAGTTGTGTA+TGG - chr2_2:52868552-52868571 None:intergenic 25.0%
! TTAAAAAAGACCAAAACCAA+AGG - chr2_2:52868585-52868604 None:intergenic 25.0%
! ATAATCAAAACATCCTTTGT+CGG - chr2_2:52868670-52868689 None:intergenic 25.0%
!!! ACAAAGGATGTTTTGATTAT+CGG + chr2_2:52868670-52868689 Msa0257130:three_prime_UTR 25.0%
! GTTGTTTACAATTCCAAAAA+TGG - chr2_2:52868710-52868729 None:intergenic 25.0%
!! TCTGCTTCTGATAATGATTT+TGG - chr2_2:52865241-52865260 None:intergenic 30.0%
AAGCAAATTTGCGAAATGAA+TGG - chr2_2:52865435-52865454 None:intergenic 30.0%
!!! GTTTTAAGAGTCTAAGTTCA+TGG + chr2_2:52865538-52865557 Msa0257130:intron 30.0%
!! AACATGTGTTGGTGTTAATA+CGG - chr2_2:52865778-52865797 None:intergenic 30.0%
AGAAAATGAATCACATACAC+GGG - chr2_2:52865811-52865830 None:intergenic 30.0%
TATTAAGGCTTAGTTGGAAA+TGG - chr2_2:52866063-52866082 None:intergenic 30.0%
AACTAAGCCTTAATAAGTTC+CGG + chr2_2:52866068-52866087 Msa0257130:intron 30.0%
TAAACTCAAAATTTGTAGGC+TGG - chr2_2:52866205-52866224 None:intergenic 30.0%
AATGCATTGTTCTCAAATAG+CGG + chr2_2:52866257-52866276 Msa0257130:intron 30.0%
! AAAGAGATAGGCACATATTT+TGG - chr2_2:52866319-52866338 None:intergenic 30.0%
AGATAGACACAAATTATGGA+AGG + chr2_2:52866426-52866445 Msa0257130:intron 30.0%
!! TTCTCTCTAAAATTTGGATC+CGG - chr2_2:52866476-52866495 None:intergenic 30.0%
GAAGATCAAAGAGAAAGAAA+AGG + chr2_2:52866493-52866512 Msa0257130:intron 30.0%
! AGAGAGATAGACACTTATTT+TGG + chr2_2:52866531-52866550 Msa0257130:intron 30.0%
!!! AGACACTTATTTTGGTAAGA+AGG + chr2_2:52866539-52866558 Msa0257130:intron 30.0%
!!! TTATTTTGGTAAGAAGGAGA+TGG + chr2_2:52866545-52866564 Msa0257130:intron 30.0%
TATATTATAACCCTGTAGCA+CGG - chr2_2:52866663-52866682 None:intergenic 30.0%
!! AATATGAGAGTATTACTCAC+TGG - chr2_2:52866913-52866932 None:intergenic 30.0%
! ACAAATAAAAAAGGGTATGG+AGG - chr2_2:52866978-52866997 None:intergenic 30.0%
CGTACAAATAAAAAAGGGTA+TGG - chr2_2:52866981-52867000 None:intergenic 30.0%
TTGACTTAATTCAACCACTA+TGG + chr2_2:52867025-52867044 Msa0257130:intron 30.0%
TGACTTAATTCAACCACTAT+GGG + chr2_2:52867026-52867045 Msa0257130:intron 30.0%
TAAACAATCAGATTTCAGTC+TGG - chr2_2:52867207-52867226 None:intergenic 30.0%
TGAAATCTGATTGTTTAGCA+AGG + chr2_2:52867210-52867229 Msa0257130:intron 30.0%
!! TGTTTTTATTGGTGATATGC+AGG + chr2_2:52867304-52867323 Msa0257130:intron 30.0%
!! GTTTTTATTGGTGATATGCA+GGG + chr2_2:52867305-52867324 Msa0257130:intron 30.0%
!!! AGAAATGTTTTTTCCGTCAA+TGG + chr2_2:52867475-52867494 Msa0257130:intron 30.0%
CATAAGAAGACATCGTTTAT+AGG + chr2_2:52867569-52867588 Msa0257130:intron 30.0%
!! GTTCTGTTTCTTTTCTTTTC+TGG + chr2_2:52867648-52867667 Msa0257130:intron 30.0%
CACAAATTGCATGTTAAAGT+TGG + chr2_2:52867725-52867744 Msa0257130:CDS 30.0%
! ATAACCTTATTTATTTGCCC+TGG - chr2_2:52867890-52867909 None:intergenic 30.0%
!! TCTTTTCTCTAGAAACTTGA+GGG + chr2_2:52868087-52868106 Msa0257130:intron 30.0%
ATCACATTTGAACTGTGAAT+AGG - chr2_2:52868236-52868255 None:intergenic 30.0%
!! TGATTGATAGTGTAGAGAAT+TGG + chr2_2:52868351-52868370 Msa0257130:CDS 30.0%
TCTCCATACACAACTTTAAT+TGG + chr2_2:52868546-52868565 Msa0257130:three_prime_UTR 30.0%
!!! TGGATTTGTTTTTTGTCCTT+TGG + chr2_2:52868566-52868585 Msa0257130:three_prime_UTR 30.0%
!!! TGTTTTTTGTCCTTTGGTTT+TGG + chr2_2:52868572-52868591 Msa0257130:three_prime_UTR 30.0%
!!! CAAAGGATGTTTTGATTATC+GGG + chr2_2:52868671-52868690 Msa0257130:three_prime_UTR 30.0%
TTACCCTGTTACAACAACAA+TGG + chr2_2:52865276-52865295 Msa0257130:exon 35.0%
! CTACCATTGTTGTTGTAACA+GGG - chr2_2:52865282-52865301 None:intergenic 35.0%
TACAACAACAATGGTAGCTA+TGG + chr2_2:52865285-52865304 Msa0257130:exon 35.0%
GACACAACATTAACATGTGT+TGG - chr2_2:52865789-52865808 None:intergenic 35.0%
ATTCCAAATTCCAATAGCAC+TGG - chr2_2:52865871-52865890 None:intergenic 35.0%
ACATCTAGTGCATATGAAGA+AGG + chr2_2:52865989-52866008 Msa0257130:intron 35.0%
GGAACTTATTAAGGCTTAGT+TGG - chr2_2:52866069-52866088 None:intergenic 35.0%
CATATCACCGGAACTTATTA+AGG - chr2_2:52866078-52866097 None:intergenic 35.0%
CGGAACTAATTTCATATCAC+CGG - chr2_2:52866090-52866109 None:intergenic 35.0%
CGGTGATATGAAATTAGTTC+CGG + chr2_2:52866088-52866107 Msa0257130:intron 35.0%
AAATTAGTTCCGGTGAACTT+TGG + chr2_2:52866098-52866117 Msa0257130:intron 35.0%
ATAACAGTGCTACAGCAAAA+TGG + chr2_2:52866282-52866301 Msa0257130:intron 35.0%
!! AGATAGGCACATATTTTGGA+AGG - chr2_2:52866315-52866334 None:intergenic 35.0%
GAAGATCGAGAGAAAAGATA+AGG - chr2_2:52866392-52866411 None:intergenic 35.0%
CTCACTAAAGTTTGGCAAAA+TGG - chr2_2:52866593-52866612 None:intergenic 35.0%
TGAGAGATAGCCACAAATTA+TGG + chr2_2:52866609-52866628 Msa0257130:intron 35.0%
AGATAGCCACAAATTATGGA+AGG + chr2_2:52866613-52866632 Msa0257130:intron 35.0%
GATAGCCACAAATTATGGAA+GGG + chr2_2:52866614-52866633 Msa0257130:intron 35.0%
ATAGCCACAAATTATGGAAG+GGG + chr2_2:52866615-52866634 Msa0257130:intron 35.0%
CTATCCTAGTTTCGCTATTA+GGG + chr2_2:52866728-52866747 Msa0257130:intron 35.0%
CAACTGTGCAATAGAAGAAA+AGG + chr2_2:52866793-52866812 Msa0257130:intron 35.0%
AGCATAGCTTACATGCATAA+AGG - chr2_2:52866952-52866971 None:intergenic 35.0%
ATACGACATTGCTTATCTGT+TGG - chr2_2:52867335-52867354 None:intergenic 35.0%
AGCAATGTCGTATTGTAATG+AGG + chr2_2:52867342-52867361 Msa0257130:CDS 35.0%
GCAATGTCGTATTGTAATGA+GGG + chr2_2:52867343-52867362 Msa0257130:CDS 35.0%
AGAGTATGAAATGCCATTGA+CGG - chr2_2:52867491-52867510 None:intergenic 35.0%
!! TTTTCTGGTAGCTTAAACGA+TGG + chr2_2:52867663-52867682 Msa0257130:intron 35.0%
! TTTCTGGTAGCTTAAACGAT+GGG + chr2_2:52867664-52867683 Msa0257130:intron 35.0%
ACATGCAATTTGTGTAACAC+TGG - chr2_2:52867719-52867738 None:intergenic 35.0%
GATACTGTGAAAGTCATATC+AGG + chr2_2:52867749-52867768 Msa0257130:CDS 35.0%
AGTCATATCAGGACATGAAA+AGG + chr2_2:52867760-52867779 Msa0257130:CDS 35.0%
GTCATATCAGGACATGAAAA+GGG + chr2_2:52867761-52867780 Msa0257130:CDS 35.0%
AGAACCAGGGCAAATAAATA+AGG + chr2_2:52867883-52867902 Msa0257130:CDS 35.0%
! ACTTGACCAAAATTTGTTCC+AGG - chr2_2:52868029-52868048 None:intergenic 35.0%
! CTCAAGTTTCTAGAGAAAAG+AGG - chr2_2:52868088-52868107 None:intergenic 35.0%
!! CTCTTTTCTCTAGAAACTTG+AGG + chr2_2:52868086-52868105 Msa0257130:intron 35.0%
! CAATCTGAAATTCAAGGCAA+AGG - chr2_2:52868208-52868227 None:intergenic 35.0%
TGCCTTGAATTTCAGATTGA+AGG + chr2_2:52868209-52868228 Msa0257130:intron 35.0%
! GACCTTCAATCTGAAATTCA+AGG - chr2_2:52868214-52868233 None:intergenic 35.0%
CAAGAACTTTATGACCTACA+CGG - chr2_2:52868289-52868308 None:intergenic 35.0%
GGTCATAAAGTTCTTGACAA+TGG + chr2_2:52868293-52868312 Msa0257130:CDS 35.0%
AGAGAATTGGAAGAAACTGA+AGG + chr2_2:52868364-52868383 Msa0257130:CDS 35.0%
TTGTGTATGGAGATCAACAT+AGG - chr2_2:52868539-52868558 None:intergenic 35.0%
AACTCTCAATGTAGACTTGT+CGG + chr2_2:52868639-52868658 Msa0257130:three_prime_UTR 35.0%
! GCTACCATTGTTGTTGTAAC+AGG - chr2_2:52865283-52865302 None:intergenic 40.0%
AACAATGGTAGCTATGGCTA+TGG + chr2_2:52865291-52865310 Msa0257130:exon 40.0%
CTCTCTTCCAACTCATTCTT+TGG + chr2_2:52865346-52865365 Msa0257130:CDS 40.0%
CGAAATGAATGGAAAGAGTG+TGG - chr2_2:52865424-52865443 None:intergenic 40.0%
! TGACCAGTGCTATTGGAATT+TGG + chr2_2:52865865-52865884 Msa0257130:intron 40.0%
! TGTAGGCTGGTTGATCAAAA+GGG - chr2_2:52866192-52866211 None:intergenic 40.0%
! TTGTAGGCTGGTTGATCAAA+AGG - chr2_2:52866193-52866212 None:intergenic 40.0%
GAGAGGATCAAGAAAGAGAT+AGG - chr2_2:52866331-52866350 None:intergenic 40.0%
GGCTATCTCTCACTAAAGTT+TGG - chr2_2:52866601-52866620 None:intergenic 40.0%
TAGCCACAAATTATGGAAGG+GGG + chr2_2:52866616-52866635 Msa0257130:intron 40.0%
GCTATCCTAGTTTCGCTATT+AGG + chr2_2:52866727-52866746 Msa0257130:intron 40.0%
ATTGCCCTAATAGCGAAACT+AGG - chr2_2:52866735-52866754 None:intergenic 40.0%
TTTCGCTATTAGGGCAATAG+CGG + chr2_2:52866737-52866756 Msa0257130:intron 40.0%
AAATAGCTGAACTCCCATAG+TGG - chr2_2:52867042-52867061 None:intergenic 40.0%
GCAATTTGTGTAACACTGGA+AGG - chr2_2:52867715-52867734 None:intergenic 40.0%
CATGTGAAGAGTAGAGAAGA+GGG + chr2_2:52867860-52867879 Msa0257130:CDS 40.0%
ATAACATTCTCCTTCGCTTG+AGG + chr2_2:52867983-52868002 Msa0257130:intron 40.0%
TAACATTCTCCTTCGCTTGA+GGG + chr2_2:52867984-52868003 Msa0257130:intron 40.0%
! ATCCTGCCTGGAACAAATTT+TGG + chr2_2:52868020-52868039 Msa0257130:intron 40.0%
TTTACCTCTTGTCCGAAGTT+TGG + chr2_2:52868053-52868072 Msa0257130:intron 40.0%
! GTTTCTAGAGAAAAGAGGCA+TGG - chr2_2:52868083-52868102 None:intergenic 40.0%
! TTTCGGTGCATTTCTTCTCA+TGG + chr2_2:52868163-52868182 Msa0257130:intron 40.0%
TCAAAACATCCTTTGTCGGA+AGG - chr2_2:52868666-52868685 None:intergenic 40.0%
GAAGCAGAAGCAAGAAGAAG+AGG + chr2_2:52865253-52865272 Msa0257130:five_prime_UTR 45.0%
AGGCTGTCCAAAGAATGAGT+TGG - chr2_2:52865356-52865375 None:intergenic 45.0%
AGAAGAGGAGAGAGAGTGAT+TGG - chr2_2:52865385-52865404 None:intergenic 45.0%
!! GAATGAAGTACCGGAAGAAG+AGG - chr2_2:52865400-52865419 None:intergenic 45.0%
GAGTGTGGAGAATGAAGTAC+CGG - chr2_2:52865409-52865428 None:intergenic 45.0%
!! CAGAAGCATTGGCGTTGTAT+AGG - chr2_2:52865724-52865743 None:intergenic 45.0%
ACGCCAATGCTTCTGATTGA+AGG + chr2_2:52865729-52865748 Msa0257130:intron 45.0%
! ACGCCTTCAATCAGAAGCAT+TGG - chr2_2:52865735-52865754 None:intergenic 45.0%
TGTAGCATGACCAGTGCTAT+TGG + chr2_2:52865858-52865877 Msa0257130:intron 45.0%
TTATGGAAGGAGAGAGTGAG+TGG + chr2_2:52866439-52866458 Msa0257130:intron 45.0%
AGAAGGAGATGGAGAGTGAT+TGG + chr2_2:52866556-52866575 Msa0257130:intron 45.0%
TGGAGAGTGATTGGAAGAAG+AGG + chr2_2:52866565-52866584 Msa0257130:intron 45.0%
AGCCACAAATTATGGAAGGG+GGG + chr2_2:52866617-52866636 Msa0257130:intron 45.0%
TGTAACACTGGAAGGCTGTT+TGG - chr2_2:52867707-52867726 None:intergenic 45.0%
GGACATGAAAAGGGTCAAGT+CGG + chr2_2:52867770-52867789 Msa0257130:CDS 45.0%
GACATGAAAAGGGTCAAGTC+GGG + chr2_2:52867771-52867790 Msa0257130:CDS 45.0%
ACATGAAAAGGGTCAAGTCG+GGG + chr2_2:52867772-52867791 Msa0257130:CDS 45.0%
GCATGTGAAGAGTAGAGAAG+AGG + chr2_2:52867859-52867878 Msa0257130:CDS 45.0%
! GACCAAAATTTGTTCCAGGC+AGG - chr2_2:52868025-52868044 None:intergenic 45.0%
TGATCCAAACTTCGGACAAG+AGG - chr2_2:52868060-52868079 None:intergenic 45.0%
AGGCATGGTGATCCAAACTT+CGG - chr2_2:52868068-52868087 None:intergenic 45.0%
GTTGGAAGAGAGTGAGAGTG+AGG - chr2_2:52865338-52865357 None:intergenic 50.0%
GAGAGAGTGATTGGAGAGAG+AGG - chr2_2:52865376-52865395 None:intergenic 50.0%
CACTCTCTCTCCTCTTCTTC+CGG + chr2_2:52865387-52865406 Msa0257130:CDS 50.0%
TCTGCTGCACCAAAGTTCAC+CGG - chr2_2:52866110-52866129 None:intergenic 50.0%
TTGGGAGAGAGAGAGAGAGA+GGG - chr2_2:52866361-52866380 None:intergenic 50.0%
ATTGGGAGAGAGAGAGAGAG+AGG - chr2_2:52866362-52866381 None:intergenic 50.0%
AAGGAGAGAGTGAGTGGAAG+TGG + chr2_2:52866445-52866464 Msa0257130:intron 50.0%
GCCACAAATTATGGAAGGGG+GGG + chr2_2:52866618-52866637 Msa0257130:intron 50.0%
TCCCCCCCTTCCATAATTTG+TGG - chr2_2:52866622-52866641 None:intergenic 50.0%
ATAACCCTGTAGCACGGATC+CGG - chr2_2:52866657-52866676 None:intergenic 50.0%
GCTTAAACGATGGGAGCGAA+AGG + chr2_2:52867673-52867692 Msa0257130:intron 50.0%
AGTAGAGAAGAGGGAGAACC+AGG + chr2_2:52867869-52867888 Msa0257130:CDS 50.0%
GTAGAGAAGAGGGAGAACCA+GGG + chr2_2:52867870-52867889 Msa0257130:CDS 50.0%
AAGAATGTCGCAAGCCGTGT+AGG + chr2_2:52868272-52868291 Msa0257130:CDS 50.0%
AGAGAGAGGGAGAGAGAGAG+AGG - chr2_2:52866348-52866367 None:intergenic 55.0%
GAGAGAGTGAGTGGAAGTGG+AGG + chr2_2:52866448-52866467 Msa0257130:intron 55.0%
GTGAGTGGAAGTGGAGGATC+CGG + chr2_2:52866454-52866473 Msa0257130:intron 55.0%
TGAAAAGGGTCAAGTCGGGG+AGG + chr2_2:52867775-52867794 Msa0257130:CDS 55.0%
ACTCGAGTTCCCTCAAGCGA+AGG - chr2_2:52867996-52868015 None:intergenic 55.0%
ACTCGAGTTCGAATCCTGCC+TGG + chr2_2:52868008-52868027 Msa0257130:intron 55.0%
CTTGTCGGTCCTTCCGACAA+AGG + chr2_2:52868654-52868673 Msa0257130:three_prime_UTR 55.0%
TGGAAGGGGGGGAGAAGAAG+AGG + chr2_2:52866629-52866648 Msa0257130:intron 60.0%
GGGGGGAGAAGAAGAGGATC+CGG + chr2_2:52866635-52866654 Msa0257130:intron 60.0%
AGGATCCGGATCCGTGCTAC+AGG + chr2_2:52866649-52866668 Msa0257130:intron 60.0%
GGATCCGGATCCGTGCTACA+GGG + chr2_2:52866650-52866669 Msa0257130:intron 60.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 52865236 52868736 52865236 ID=Msa0257130;Name=Msa0257130
chr2_2 mRNA 52865236 52868736 52865236 ID=Msa0257130-mRNA-1;Parent=Msa0257130;Name=Msa0257130-mRNA-1;_AED=0.01;_eAED=0.01;_QI=59|1|1|1|1|1|4|312|194
chr2_2 exon 52865236 52865408 52865236 ID=Msa0257130-mRNA-1:exon:15824;Parent=Msa0257130-mRNA-1
chr2_2 exon 52867326 52867364 52867326 ID=Msa0257130-mRNA-1:exon:15825;Parent=Msa0257130-mRNA-1
chr2_2 exon 52867674 52867904 52867674 ID=Msa0257130-mRNA-1:exon:15826;Parent=Msa0257130-mRNA-1
chr2_2 exon 52868224 52868736 52868224 ID=Msa0257130-mRNA-1:exon:15827;Parent=Msa0257130-mRNA-1
chr2_2 five_prime_UTR 52865236 52865294 52865236 ID=Msa0257130-mRNA-1:five_prime_utr;Parent=Msa0257130-mRNA-1
chr2_2 CDS 52865295 52865408 52865295 ID=Msa0257130-mRNA-1:cds;Parent=Msa0257130-mRNA-1
chr2_2 CDS 52867326 52867364 52867326 ID=Msa0257130-mRNA-1:cds;Parent=Msa0257130-mRNA-1
chr2_2 CDS 52867674 52867904 52867674 ID=Msa0257130-mRNA-1:cds;Parent=Msa0257130-mRNA-1
chr2_2 CDS 52868224 52868424 52868224 ID=Msa0257130-mRNA-1:cds;Parent=Msa0257130-mRNA-1
chr2_2 three_prime_UTR 52868425 52868736 52868425 ID=Msa0257130-mRNA-1:three_prime_utr;Parent=Msa0257130-mRNA-1
Gene Sequence

>Msa0257130

ATGGTAGCTATGGCTATGGCTTCTCTTCAGAGTTCTATGACCTCACTCTCACTCTCTTCCAACTCATTCTTTGGACAGCCTCTCTCTCCAATCACTCTCTCTCCTCTTCTTCCGGGTAAGCCAACAGATAAGCAATGTCGTATTGTAATGAGGCTTAAACGATGGGAGCGAAAGGAATGTAAACCAAACAGCCTTCCAGTGTTACACAAATTGCATGTTAAAGTTGGAGATACTGTGAAAGTCATATCAGGACATGAAAAGGGTCAAGTCGGGGAGGTTACTAAGATCTTCAAGCACAACAGCACTATCATTGTCAAAGACATAAACTTGAAGACAAAGCATGTGAAGAGTAGAGAAGAGGGAGAACCAGGGCAAATAAATAAGATTGAAGGTCCTATTCACAGTTCAAATGTGATGCTCTACTCTAAAGAAAAGAATGTCGCAAGCCGTGTAGGTCATAAAGTTCTTGACAATGGTAAAAAAGTTCGCTATTTAATAAAAACTGGAGAGGTGATTGATAGTGTAGAGAATTGGAAGAAACTGAAGGAAGCTACTAAAAAAACTGAAGAAGTTGTTGCTGCCTAG

Protein sequence

>Msa0257130

MVAMAMASLQSSMTSLSLSSNSFFGQPLSPITLSPLLPGKPTDKQCRIVMRLKRWERKECKPNSLPVLHKLHVKVGDTVKVISGHEKGQVGEVTKIFKHNSTIIVKDINLKTKHVKSREEGEPGQINKIEGPIHSSNVMLYSKEKNVASRVGHKVLDNGKKVRYLIKTGEVIDSVENWKKLKEATKKTEEVVAA*