AlfalfaGEDB | Msa0257130

M. sativa cultivar zhongmu-4 / Msa0257130

KEGG: K02895
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009941 GO:0009987 GO:0010467 GO:0016043 GO:0019538 GO:0031967 GO:0031975 GO:0032544 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:0071840 GO:1901564 GO:1901566 GO:1901576
PFAM: PF00467.32

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0257130	XP_003596594.1	96.907	194	6	0	1	194	1	194	6.89e-135	385

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0257130	sp\|P11893\|RK24_PEA	86.598	194	26	0	1	194	1	194	4.71e-110	315

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0257130	G7IHC1	96.907	194	6	0	1	194	1	194	3.29e-135	385

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000220	Msa0257130	0.825490	4.556368e-54	-8.615850e-47
Msa0000780	Msa0257130	0.801798	7.595091e-49	-8.615850e-47
Msa0001460	Msa0257130	0.846625	1.930668e-59	-8.615850e-47
Msa0001950	Msa0257130	0.821771	3.381474e-53	-8.615850e-47
Msa0002060	Msa0257130	0.811883	5.601210e-51	-8.615850e-47
Msa0003470	Msa0257130	0.901886	1.702181e-78	-8.615850e-47
Msa0004350	Msa0257130	0.824810	6.597667e-54	-8.615850e-47
Msa0007160	Msa0257130	0.844220	8.649404e-59	-8.615850e-47
Msa0007450	Msa0257130	0.853816	1.861173e-61	-8.615850e-47
Msa0008850	Msa0257130	0.850569	1.559860e-60	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0257130	MtrunA17_Chr2g0319111	96.907	194	6	0	1	194	1	194	6.34e-139	385
Msa0257130	MtrunA17_Chr1g0169641	37.500	88	54	1	76	163	18	104	7.07e-12	60.8

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0257130	AT5G54600.1	72.941	170	45	1	25	193	24	193	2.04e-87	256
Msa0257130	AT5G54600.2	64.118	170	41	2	25	193	24	174	3.54e-70	211
Msa0257130	AT5G23535.2	36.170	94	59	1	76	169	18	110	8.45e-12	61.2
Msa0257130	AT5G23535.1	36.170	94	59	1	76	169	18	110	8.45e-12	61.2

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Find 55 sgRNAs with CRISPR-Local

Find 195 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACAATGGTAGCTATGGCTA+TGG	0.541534	2_2:+52865291	Msa0257130:exon
AACTCTCAATGTAGACTTGT+CGG	0.435195	2_2:+52868639	Msa0257130:three_prime_UTR
AAGAATGTCGCAAGCCGTGT+AGG	0.582151	2_2:+52868272	Msa0257130:CDS
AATCCAATTAAAGTTGTGTA+TGG	0.440174	2_2:-52868549	None:intergenic
ACATGAAAAGGGTCAAGTCG+GGG	0.610466	2_2:+52867772	Msa0257130:CDS
ACATGCAATTTGTGTAACAC+TGG	0.551056	2_2:-52867716	None:intergenic
AGAACCAGGGCAAATAAATA+AGG	0.386690	2_2:+52867883	Msa0257130:CDS
AGAAGAGGAGAGAGAGTGAT+TGG	0.353077	2_2:-52865382	None:intergenic
AGAGAATTGGAAGAAACTGA+AGG	0.625300	2_2:+52868364	Msa0257130:CDS
AGCAATGTCGTATTGTAATG+AGG	0.546477	2_2:+52867342	Msa0257130:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGCAAATTTGCGAAATGAA+TGG	-	chr2_2:52865435-52865454	None:intergenic	30.0%
AGAAAATGAATCACATACAC+GGG	-	chr2_2:52865811-52865830	None:intergenic	30.0%
TATTAAGGCTTAGTTGGAAA+TGG	-	chr2_2:52866063-52866082	None:intergenic	30.0%
AACTAAGCCTTAATAAGTTC+CGG	+	chr2_2:52866068-52866087	Msa0257130:intron	30.0%
TAAACTCAAAATTTGTAGGC+TGG	-	chr2_2:52866205-52866224	None:intergenic	30.0%
AATGCATTGTTCTCAAATAG+CGG	+	chr2_2:52866257-52866276	Msa0257130:intron	30.0%
AGATAGACACAAATTATGGA+AGG	+	chr2_2:52866426-52866445	Msa0257130:intron	30.0%
GAAGATCAAAGAGAAAGAAA+AGG	+	chr2_2:52866493-52866512	Msa0257130:intron	30.0%
TATATTATAACCCTGTAGCA+CGG	-	chr2_2:52866663-52866682	None:intergenic	30.0%
CGTACAAATAAAAAAGGGTA+TGG	-	chr2_2:52866981-52867000	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_2	gene	52865236	52868736	52865236	ID=Msa0257130;Name=Msa0257130
chr2_2	mRNA	52865236	52868736	52865236	ID=Msa0257130-mRNA-1;Parent=Msa0257130;Name=Msa0257130-mRNA-1;_AED=0.01;_eAED=0.01;_QI=59\|1\|1\|1\|1\|1\|4\|312\|194
chr2_2	exon	52865236	52865408	52865236	ID=Msa0257130-mRNA-1:exon:15824;Parent=Msa0257130-mRNA-1
chr2_2	exon	52867326	52867364	52867326	ID=Msa0257130-mRNA-1:exon:15825;Parent=Msa0257130-mRNA-1
chr2_2	exon	52867674	52867904	52867674	ID=Msa0257130-mRNA-1:exon:15826;Parent=Msa0257130-mRNA-1
chr2_2	exon	52868224	52868736	52868224	ID=Msa0257130-mRNA-1:exon:15827;Parent=Msa0257130-mRNA-1
chr2_2	five_prime_UTR	52865236	52865294	52865236	ID=Msa0257130-mRNA-1:five_prime_utr;Parent=Msa0257130-mRNA-1
chr2_2	CDS	52865295	52865408	52865295	ID=Msa0257130-mRNA-1:cds;Parent=Msa0257130-mRNA-1
chr2_2	CDS	52867326	52867364	52867326	ID=Msa0257130-mRNA-1:cds;Parent=Msa0257130-mRNA-1
chr2_2	CDS	52867674	52867904	52867674	ID=Msa0257130-mRNA-1:cds;Parent=Msa0257130-mRNA-1
chr2_2	CDS	52868224	52868424	52868224	ID=Msa0257130-mRNA-1:cds;Parent=Msa0257130-mRNA-1
chr2_2	three_prime_UTR	52868425	52868736	52868425	ID=Msa0257130-mRNA-1:three_prime_utr;Parent=Msa0257130-mRNA-1

Gene Sequence

>Msa0257130

ATGGTAGCTATGGCTATGGCTTCTCTTCAGAGTTCTATGACCTCACTCTCACTCTCTTCCAACTCATTCTTTGGACAGCCTCTCTCTCCAATCACTCTCTCTCCTCTTCTTCCGGGTAAGCCAACAGATAAGCAATGTCGTATTGTAATGAGGCTTAAACGATGGGAGCGAAAGGAATGTAAACCAAACAGCCTTCCAGTGTTACACAAATTGCATGTTAAAGTTGGAGATACTGTGAAAGTCATATCAGGACATGAAAAGGGTCAAGTCGGGGAGGTTACTAAGATCTTCAAGCACAACAGCACTATCATTGTCAAAGACATAAACTTGAAGACAAAGCATGTGAAGAGTAGAGAAGAGGGAGAACCAGGGCAAATAAATAAGATTGAAGGTCCTATTCACAGTTCAAATGTGATGCTCTACTCTAAAGAAAAGAATGTCGCAAGCCGTGTAGGTCATAAAGTTCTTGACAATGGTAAAAAAGTTCGCTATTTAATAAAAACTGGAGAGGTGATTGATAGTGTAGAGAATTGGAAGAAACTGAAGGAAGCTACTAAAAAAACTGAAGAAGTTGTTGCTGCCTAG

Protein sequence

>Msa0257130

MVAMAMASLQSSMTSLSLSSNSFFGQPLSPITLSPLLPGKPTDKQCRIVMRLKRWERKECKPNSLPVLHKLHVKVGDTVKVISGHEKGQVGEVTKIFKHNSTIIVKDINLKTKHVKSREEGEPGQINKIEGPIHSSNVMLYSKEKNVASRVGHKVLDNGKKVRYLIKTGEVIDSVENWKKLKEATKKTEEVVAA*