Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0557720 | XP_013457002.1 | 99.597 | 248 | 1 | 0 | 1 | 248 | 1 | 248 | 2.08e-178 | 500 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0557720 | sp|Q9M3V8|RS6_ASPOF | 92.975 | 242 | 17 | 0 | 1 | 242 | 1 | 242 | 8.07e-166 | 461 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0557720 | I3S1W3 | 99.597 | 248 | 1 | 0 | 1 | 248 | 1 | 248 | 9.92e-179 | 500 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000100 | Msa0557720 | 0.884498 | 1.822200e-71 | -8.615850e-47 |
| Msa0040220 | Msa0557720 | 0.821385 | 4.152730e-53 | -8.615850e-47 |
| Msa0087910 | Msa0557720 | 0.812008 | 5.260841e-51 | -8.615850e-47 |
| Msa0184650 | Msa0557720 | 0.844427 | 7.612407e-59 | -8.615850e-47 |
| Msa0222730 | Msa0557720 | 0.837596 | 4.736285e-57 | -8.615850e-47 |
| Msa0223950 | Msa0557720 | 0.807438 | 5.054975e-50 | -8.615850e-47 |
| Msa0475810 | Msa0557720 | 0.821394 | 4.133320e-53 | -8.615850e-47 |
| Msa0264010 | Msa0557720 | 0.844049 | 9.615836e-59 | -8.615850e-47 |
| Msa0342850 | Msa0557720 | 0.851678 | 7.592014e-61 | -8.615850e-47 |
| Msa0557720 | Msa0653060 | 0.829170 | 5.980114e-55 | -8.615850e-47 |
| Msa0557720 | Msa1050100 | 0.805932 | 1.051514e-49 | -8.615850e-47 |
| Msa0557720 | Msa1078980 | 0.801976 | 6.984342e-49 | -8.615850e-47 |
| Msa0557720 | Msa1079920 | 0.823414 | 1.403061e-53 | -8.615850e-47 |
| Msa0557720 | Msa1083370 | 0.810186 | 1.306375e-50 | -8.615850e-47 |
| Msa0557720 | Msa1124850 | 0.807099 | 5.963621e-50 | -8.615850e-47 |
| Msa0557720 | Msa1128120 | 0.859780 | 3.264615e-63 | -8.615850e-47 |
| Msa0557720 | Msa1426120 | 0.800994 | 1.109654e-48 | -8.615850e-47 |
| Msa0557720 | Msa1444240 | 0.803683 | 3.100493e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0557720 | MtrunA17_Chr4g0047021 | 99.597 | 248 | 1 | 0 | 1 | 248 | 1 | 248 | 0.0 | 500 |
| Msa0557720 | MtrunA17_Chr7g0234621 | 96.371 | 248 | 9 | 0 | 1 | 248 | 1 | 248 | 1.27e-176 | 485 |
| Msa0557720 | MtrunA17_Chr2g0282411 | 96.371 | 248 | 9 | 0 | 1 | 248 | 1 | 248 | 5.64e-176 | 483 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0557720 | AT5G10360.1 | 93.388 | 242 | 16 | 0 | 1 | 242 | 1 | 242 | 1.57e-164 | 455 |
| Msa0557720 | AT4G31700.1 | 91.200 | 250 | 20 | 1 | 1 | 248 | 1 | 250 | 4.84e-157 | 436 |
| Msa0557720 | AT5G10360.2 | 74.793 | 242 | 9 | 1 | 1 | 242 | 1 | 190 | 6.52e-120 | 340 |
| Msa0557720 | AT4G31700.2 | 90.426 | 188 | 16 | 1 | 63 | 248 | 1 | 188 | 8.87e-109 | 311 |
Find 101 sgRNAs with CRISPR-Local
Find 198 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATATTGCAGCCGTGCTTTC+TGG | 0.027256 | 4_1:-56188496 | Msa0557720:intron |
| TTATCAATTTGATGTTATTT+TGG | 0.155467 | 4_1:-56186590 | Msa0557720:three_prime_UTR |
| TTGCTCTCTGCAGGAGTTTA+AGG | 0.158668 | 4_1:-56188346 | Msa0557720:intron |
| GTTGAACAGCTTACGGATTT+TGG | 0.198177 | 4_1:+56187493 | None:intergenic |
| TTAATCATCGCAACTTATAA+TGG | 0.258242 | 4_1:+56186539 | None:intergenic |
| CAATTCTTGCTCGCTTCCTT+TGG | 0.278485 | 4_1:+56186958 | None:intergenic |
| GTGACCAATCGCTGTATCTT+TGG | 0.338640 | 4_1:+56186993 | None:intergenic |
| GGAAGTTCTTGGTGATGCTT+TGG | 0.339745 | 4_1:-56188456 | Msa0557720:CDS |
| TGAGATTTCATTTGAATTGA+AGG | 0.342708 | 4_1:-56186632 | Msa0557720:three_prime_UTR |
| TTGTTGAAATAATAAATGTT+AGG | 0.349894 | 4_1:-56186431 | Msa0557720:three_prime_UTR |
| ATATTGCAGCCGTGCTTTCT+GGG | 0.350681 | 4_1:-56188495 | Msa0557720:intron |
| TTCCCTCTGCTCCTTCAATC+TGG | 0.366847 | 4_1:+56186869 | None:intergenic |
| CTCTTAGGACCTCTCATCCT+TGG | 0.367925 | 4_1:+56187521 | None:intergenic |
| AAAGGTGATAATGATCTTCC+AGG | 0.375447 | 4_1:-56187563 | Msa0557720:CDS |
| GTCAACACTCCCTGCTTCAT+TGG | 0.384872 | 4_1:+56188279 | None:intergenic |
| TGTTGACCCCTGGCCGTGTT+AGG | 0.390290 | 4_1:-56188263 | Msa0557720:CDS |
| GGCGCAATGGAGAGCGTAGA+AGG | 0.390771 | 4_1:-56187649 | Msa0557720:CDS |
| TGCTCTCTGCAGGAGTTTAA+GGG | 0.392051 | 4_1:-56188345 | Msa0557720:intron |
| TGCGATGATTAACAATGAAC+AGG | 0.394403 | 4_1:-56186528 | Msa0557720:three_prime_UTR |
| ACTCCTTGCTTCCAGATTGA+AGG | 0.399330 | 4_1:-56186880 | Msa0557720:CDS |
| GATAGTCAGTTTGTTAAAAG+TGG | 0.400235 | 4_1:-56186409 | Msa0557720:three_prime_UTR |
| ATAAGTACAGCTGTAGGATT+AGG | 0.420000 | 4_1:-56186489 | Msa0557720:three_prime_UTR |
| AGGATCTCACAGGAAGTTCT+TGG | 0.420484 | 4_1:-56188467 | Msa0557720:CDS |
| GAAGTTCTTGGTGATGCTTT+GGG | 0.420593 | 4_1:-56188455 | Msa0557720:CDS |
| TGGCCTAGCACTGGATAGTC+TGG | 0.428627 | 4_1:+56186815 | None:intergenic |
| CAAGAGAGAGTTTCCGCGGC+TGG | 0.441959 | 4_1:-56189341 | Msa0557720:five_prime_UTR |
| CGCTTCCTTTGGAGTGTCAA+AGG | 0.447165 | 4_1:+56186969 | None:intergenic |
| TCAACACTCCCTGCTTCATT+GGG | 0.455023 | 4_1:+56188280 | None:intergenic |
| CTGACATCCAGTGGTTGGAT+TGG | 0.459762 | 4_1:+56189185 | None:intergenic |
| TTGTTTGATTGCAGGGAAGA+AGG | 0.460053 | 4_1:-56187027 | Msa0557720:intron |
| TTGACAGGTTGAACAGCTTA+CGG | 0.462619 | 4_1:+56187486 | None:intergenic |
| AGCAAGAGCCTAACACGGCC+AGG | 0.463109 | 4_1:+56188255 | None:intergenic |
| ACAAGGATTCCCAATGAAGC+AGG | 0.478682 | 4_1:-56188289 | Msa0557720:CDS |
| GCAGCTTACAGCTAGAGATA+TGG | 0.481546 | 4_1:-56186777 | Msa0557720:three_prime_UTR |
| TTCTTCTGACATCCAGTGGT+TGG | 0.481727 | 4_1:+56189180 | None:intergenic |
| AAGTTCAAAACAGAGAGGTC+GGG | 0.481755 | 4_1:+56187599 | None:intergenic |
| GCTGCTTATGCTGTGGCAGA+TGG | 0.483327 | 4_1:+56186795 | None:intergenic |
| GCACATCATCATCCTTTGAC+AGG | 0.490483 | 4_1:+56187471 | None:intergenic |
| TGAACAGGTTTAGCTTGTAA+AGG | 0.493498 | 4_1:-56186513 | Msa0557720:three_prime_UTR |
| AACTTGGTTATTGTGAAGAA+AGG | 0.498754 | 4_1:-56187581 | Msa0557720:CDS |
| AATCAGAAACTTACCATCCT+TGG | 0.507683 | 4_1:+56187412 | None:intergenic |
| AACGTTGCCAATCCAACCAC+TGG | 0.507932 | 4_1:-56189192 | Msa0557720:CDS |
| TCATTAGTCTTGTTCCATGA+GGG | 0.522530 | 4_1:-56186729 | Msa0557720:three_prime_UTR |
| GCAAGAGCCTAACACGGCCA+GGG | 0.526221 | 4_1:+56188256 | None:intergenic |
| GGTTATGTCTTCAAGATCAC+TGG | 0.529877 | 4_1:-56188324 | Msa0557720:CDS |
| AAGCTTCTTCTGACATCCAG+TGG | 0.530433 | 4_1:+56189176 | None:intergenic |
| TGGAAACAAAACCTTCATGT+TGG | 0.536438 | 4_1:+56189301 | None:intergenic |
| GTTTATCATTAACACCCTCA+TGG | 0.538364 | 4_1:+56186715 | None:intergenic |
| TATGTCTTCAAGATCACTGG+TGG | 0.541337 | 4_1:-56188321 | Msa0557720:CDS |
| TTCATTAGTCTTGTTCCATG+AGG | 0.544368 | 4_1:-56186730 | Msa0557720:three_prime_UTR |
| AAGCAGGGAGTGTTGACCCC+TGG | 0.544754 | 4_1:-56188273 | Msa0557720:CDS |
| CTTCCGTGTCCACGGAAACA+AGG | 0.545510 | 4_1:+56187671 | None:intergenic |
| TTCTCAACATCAGTAAGCCC+TGG | 0.548857 | 4_1:+56187545 | None:intergenic |
| GCCGTGCTTTCTGGGACAAG+AGG | 0.553103 | 4_1:-56188487 | Msa0557720:CDS |
| CAAGTTCAAAACAGAGAGGT+CGG | 0.553854 | 4_1:+56187598 | None:intergenic |
| GGAACGCCGAAGTGAGAGCT+TGG | 0.554466 | 4_1:-56186850 | Msa0557720:CDS |
| CTTGTTTCCGTGGACACGGA+AGG | 0.556226 | 4_1:-56187670 | Msa0557720:CDS |
| GCAGGAACTCCTTGTTTCCG+TGG | 0.557291 | 4_1:-56187680 | Msa0557720:intron |
| CAGAAACTTACCATCCTTGG+TGG | 0.557776 | 4_1:+56187415 | None:intergenic |
| CAAGAAGAAGAGAATTGCTA+AGG | 0.559648 | 4_1:-56186931 | Msa0557720:CDS |
| AGCTCCAAAGATACAGCGAT+TGG | 0.560639 | 4_1:-56186997 | Msa0557720:CDS |
| TCCTCTTGTCCCAGAAAGCA+CGG | 0.564472 | 4_1:+56188486 | None:intergenic |
| CGTGGACACGGAAGGCGCAA+TGG | 0.565614 | 4_1:-56187662 | Msa0557720:CDS |
| AGGACGAGATTCCAACATGA+AGG | 0.566551 | 4_1:-56189312 | Msa0557720:intron |
| ACTCCTTGTTTCCGTGGACA+CGG | 0.569669 | 4_1:-56187674 | Msa0557720:CDS |
| CGTAGAAGGAAGTCTGTTCG+TGG | 0.573391 | 4_1:-56187635 | Msa0557720:CDS |
| GCTCCTTCAATCTGGAAGCA+AGG | 0.577913 | 4_1:+56186877 | None:intergenic |
| GGTCCAGACTATCCAGTGCT+AGG | 0.578322 | 4_1:-56186818 | Msa0557720:CDS |
| CCTTGGTGGTGAAAGTTCTA+CGG | 0.579080 | 4_1:+56187429 | None:intergenic |
| CATCGCAACTTATAATGGAA+AGG | 0.579252 | 4_1:+56186544 | None:intergenic |
| TGTGGCAGATGGCCTAGCAC+TGG | 0.579361 | 4_1:+56186806 | None:intergenic |
| TTCCAGATTGAAGGAGCAGA+GGG | 0.584168 | 4_1:-56186871 | Msa0557720:CDS |
| AGAACTTTCACCACCAAGGA+TGG | 0.589936 | 4_1:-56187425 | Msa0557720:intron |
| CATTGCGCCTTCCGTGTCCA+CGG | 0.591891 | 4_1:+56187663 | None:intergenic |
| CTGGGACAAGAGGATCTCAC+AGG | 0.592723 | 4_1:-56188477 | Msa0557720:CDS |
| TAAGCTGTTCAACCTGTCAA+AGG | 0.594543 | 4_1:-56187483 | Msa0557720:CDS |
| AGTTCAAAACAGAGAGGTCG+GGG | 0.595017 | 4_1:+56187600 | None:intergenic |
| TTACTGATGTTGAGAAGCCA+AGG | 0.596042 | 4_1:-56187538 | Msa0557720:CDS |
| GTTGAGAAGCCAAGGATGAG+AGG | 0.601224 | 4_1:-56187530 | Msa0557720:CDS |
| GTTTCCGCGGCTGGATCAAG+AGG | 0.604884 | 4_1:-56189332 | Msa0557720:five_prime_UTR |
| AAGGTGATAATGATCTTCCA+GGG | 0.607328 | 4_1:-56187562 | Msa0557720:CDS |
| AAAGGAATAAGTACAGCTGT+AGG | 0.608411 | 4_1:-56186495 | Msa0557720:three_prime_UTR |
| GTTAGGCTCTTGCTCCATAG+AGG | 0.608724 | 4_1:-56188246 | Msa0557720:intron |
| TCTTAGCCAAGCTCTCACTT+CGG | 0.610174 | 4_1:+56186844 | None:intergenic |
| TCACTCCTTTGACACTCCAA+AGG | 0.610174 | 4_1:-56186974 | Msa0557720:CDS |
| GTGAGAGCTTGGCTAAGAAG+AGG | 0.611225 | 4_1:-56186839 | Msa0557720:CDS |
| CAAGAGCCTAACACGGCCAG+GGG | 0.618346 | 4_1:+56188257 | None:intergenic |
| CTTCCAGATTGAAGGAGCAG+AGG | 0.620391 | 4_1:-56186872 | Msa0557720:CDS |
| ATGTCTTCAAGATCACTGGT+GGG | 0.622519 | 4_1:-56188320 | Msa0557720:CDS |
| GTGTGCGGCTTCAGCAACAA+TGG | 0.626284 | 4_1:+56189363 | None:intergenic |
| AATTGCTAAGGCAAAATCAG+AGG | 0.627856 | 4_1:-56186919 | Msa0557720:CDS |
| GGTGGTGAAAGTTCTACGGT+AGG | 0.627958 | 4_1:+56187433 | None:intergenic |
| CAAGGATTCCCAATGAAGCA+GGG | 0.635106 | 4_1:-56188288 | Msa0557720:CDS |
| ACTGGTGGGTGTGACAAACA+AGG | 0.636404 | 4_1:-56188306 | Msa0557720:CDS |
| GCTGTAAGCTGCTTATGCTG+TGG | 0.655143 | 4_1:+56186788 | None:intergenic |
| TCGTCCTCTTGATCCAGCCG+CGG | 0.656441 | 4_1:+56189328 | None:intergenic |
| CACACAAGAGAGAGTTTCCG+CGG | 0.664668 | 4_1:-56189345 | Msa0557720:five_prime_UTR |
| CGGAAACTCTCTCTTGTGTG+CGG | 0.678245 | 4_1:+56189348 | None:intergenic |
| CCGTAGAACTTTCACCACCA+AGG | 0.691015 | 4_1:-56187429 | Msa0557720:CDS |
| TATGGAGCAAGAGCCTAACA+CGG | 0.710814 | 4_1:+56188250 | None:intergenic |
| TAACCAAGTTCAAAACAGAG+AGG | 0.738467 | 4_1:+56187594 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTATATATCCTTATATTAA+GGG | - | chr4_1:56188397-56188416 | Msa0557720:intron | 10.0% |
| !! | TATAAGGATATATAAAGAAA+TGG | + | chr4_1:56188393-56188412 | None:intergenic | 15.0% |
| !! | CTTTATATATCCTTATATTA+AGG | - | chr4_1:56188396-56188415 | Msa0557720:intron | 15.0% |
| !!! | TTATCAATTTGATGTTATTT+TGG | - | chr4_1:56189174-56189193 | Msa0557720:CDS | 15.0% |
| !! | TTGTTGAAATAATAAATGTT+AGG | - | chr4_1:56189333-56189352 | Msa0557720:five_prime_UTR | 15.0% |
| !!! | TCATTTGAAGTATTTTTCTT+AGG | - | chr4_1:56186672-56186691 | Msa0557720:three_prime_UTR | 20.0% |
| !! | CAGAAAATTGAAAAGAATTT+CGG | + | chr4_1:56186766-56186785 | None:intergenic | 20.0% |
| !! | TAGCTTATGAAAATAGTTTA+TGG | - | chr4_1:56187020-56187039 | Msa0557720:intron | 20.0% |
| !!! | TTTATTTTATTGTGTGTAGT+AGG | - | chr4_1:56187065-56187084 | Msa0557720:intron | 20.0% |
| !!! | TTAAGTTGTTTATCAAAACA+AGG | - | chr4_1:56187153-56187172 | Msa0557720:intron | 20.0% |
| !!! | TTTTTGTGAAGTTATTTATG+TGG | - | chr4_1:56187216-56187235 | Msa0557720:intron | 20.0% |
| !! | TAAATAGATTGAAGATTTGA+AGG | + | chr4_1:56187558-56187577 | None:intergenic | 20.0% |
| !! | ACATGAGATAAATAGTAAAA+TGG | + | chr4_1:56187686-56187705 | None:intergenic | 20.0% |
| !! | AAGAATATTACTTTCATTGA+AGG | - | chr4_1:56188558-56188577 | Msa0557720:intron | 20.0% |
| !!! | TCAATATGTTTTGATATGCA+TGG | - | chr4_1:56186848-56186867 | Msa0557720:CDS | 25.0% |
| !! | CATTGTCATTTATCTGAATT+TGG | - | chr4_1:56186880-56186899 | Msa0557720:CDS | 25.0% |
| !!! | ATTTGGTTTGAACTGATATT+TGG | - | chr4_1:56186897-56186916 | Msa0557720:CDS | 25.0% |
| !! | ACTATTTTCATAAGCTATCT+TGG | + | chr4_1:56187017-56187036 | None:intergenic | 25.0% |
| ! | TTACAATGCTCTACAAAATA+AGG | + | chr4_1:56187375-56187394 | None:intergenic | 25.0% |
| ! | AAAAAAAAATGCTACCTCTA+TGG | + | chr4_1:56187535-56187554 | None:intergenic | 25.0% |
| ! | TCTTCAATCTATTTACCTTT+CGG | - | chr4_1:56187563-56187582 | Msa0557720:CDS | 25.0% |
| ! | CGTTCATAAATTTATAGTAG+TGG | - | chr4_1:56187637-56187656 | Msa0557720:CDS | 25.0% |
| ! | TCATAAATTTATAGTAGTGG+AGG | - | chr4_1:56187640-56187659 | Msa0557720:CDS | 25.0% |
| ! | GTTATCTCTAATATTACATG+TGG | + | chr4_1:56187768-56187787 | None:intergenic | 25.0% |
| !! | AGTTCTTTTCATAAAGTTAG+TGG | + | chr4_1:56187816-56187835 | None:intergenic | 25.0% |
| ! | AACAATAATCATTGTGATCA+TGG | + | chr4_1:56187954-56187973 | None:intergenic | 25.0% |
| ! | GCAAATAATGAAATACTAAG+TGG | + | chr4_1:56188013-56188032 | None:intergenic | 25.0% |
| ! | CTTAGTATTTCATTATTTGC+AGG | - | chr4_1:56188013-56188032 | Msa0557720:intron | 25.0% |
| ! | AGAACAAAAATGAATACAAG+TGG | + | chr4_1:56188500-56188519 | None:intergenic | 25.0% |
| ! | TTCATTACAAATGTCTGTAT+TGG | + | chr4_1:56188699-56188718 | None:intergenic | 25.0% |
| ! | GTAATGAATTGTAATCTTAG+TGG | - | chr4_1:56188711-56188730 | Msa0557720:intron | 25.0% |
| ! | TGAGATTTCATTTGAATTGA+AGG | - | chr4_1:56189132-56189151 | Msa0557720:intron | 25.0% |
| ! | TTAATCATCGCAACTTATAA+TGG | + | chr4_1:56189228-56189247 | None:intergenic | 25.0% |
| AATCGAAGAATTGAAGAGAT+TGG | + | chr4_1:56186486-56186505 | None:intergenic | 30.0% | |
| GAAAATGAAGAGAGAGTAAA+TGG | + | chr4_1:56186645-56186664 | None:intergenic | 30.0% | |
| CCAACATAGATTTATGAACA+TGG | + | chr4_1:56186722-56186741 | None:intergenic | 30.0% | |
| CCATGTTCATAAATCTATGT+TGG | - | chr4_1:56186719-56186738 | Msa0557720:three_prime_UTR | 30.0% | |
| ATATGACTGTAGTGTAAATC+TGG | - | chr4_1:56186816-56186835 | Msa0557720:CDS | 30.0% | |
| ! | TGTAGAAATAAGTTGGAAAC+AGG | + | chr4_1:56186988-56187007 | None:intergenic | 30.0% |
| GTGAACTTGTAGAAATAAGT+TGG | + | chr4_1:56186995-56187014 | None:intergenic | 30.0% | |
| TTGCCTCTTAGTATTACTAT+CGG | - | chr4_1:56187611-56187630 | Msa0557720:CDS | 30.0% | |
| ! | TATCTCATGTGATTTTGCAT+TGG | - | chr4_1:56187696-56187715 | Msa0557720:intron | 30.0% |
| ! | GTGATTTTGCATTGGATTAT+TGG | - | chr4_1:56187704-56187723 | Msa0557720:intron | 30.0% |
| ! | GCATATGTAGTTATTTCAGT+AGG | - | chr4_1:56187734-56187753 | Msa0557720:intron | 30.0% |
| CCAAAACTATTTAACTAGGA+GGG | + | chr4_1:56187844-56187863 | None:intergenic | 30.0% | |
| TCCAAAACTATTTAACTAGG+AGG | + | chr4_1:56187845-56187864 | None:intergenic | 30.0% | |
| ACGTCCAAAACTATTTAACT+AGG | + | chr4_1:56187848-56187867 | None:intergenic | 30.0% | |
| !!! | TTAAATAGTTTTGGACGTGT+GGG | - | chr4_1:56187850-56187869 | Msa0557720:intron | 30.0% |
| AACTTGGTTATTGTGAAGAA+AGG | - | chr4_1:56188183-56188202 | Msa0557720:intron | 30.0% | |
| TATCCTTATATTAAGGGTAG+TGG | - | chr4_1:56188403-56188422 | Msa0557720:intron | 30.0% | |
| ATCCTTATATTAAGGGTAGT+GGG | - | chr4_1:56188404-56188423 | Msa0557720:intron | 30.0% | |
| ACAAAAATGAATACAAGTGG+AGG | + | chr4_1:56188497-56188516 | None:intergenic | 30.0% | |
| ACAGTATACATTGTCTAGAT+TGG | - | chr4_1:56188593-56188612 | Msa0557720:intron | 30.0% | |
| CAGTATACATTGTCTAGATT+GGG | - | chr4_1:56188594-56188613 | Msa0557720:intron | 30.0% | |
| AGTATACATTGTCTAGATTG+GGG | - | chr4_1:56188595-56188614 | Msa0557720:intron | 30.0% | |
| !! | CTGTATTGGTACAATTTTAC+CGG | + | chr4_1:56188685-56188704 | None:intergenic | 30.0% |
| !!! | TTGATGTTATTTTGGCACAA+TGG | - | chr4_1:56189182-56189201 | Msa0557720:CDS | 30.0% |
| !! | GATAGTCAGTTTGTTAAAAG+TGG | - | chr4_1:56189355-56189374 | Msa0557720:five_prime_UTR | 30.0% |
| TGGAAACAAAACCTTCATGT+TGG | + | chr4_1:56186466-56186485 | None:intergenic | 35.0% | |
| CTAAACAAACCAATCCAAAC+AGG | + | chr4_1:56186925-56186944 | None:intergenic | 35.0% | |
| TCTCCGATAGTAATACTAAG+AGG | + | chr4_1:56187617-56187636 | None:intergenic | 35.0% | |
| ! | CCCTCCTAGTTAAATAGTTT+TGG | - | chr4_1:56187841-56187860 | Msa0557720:intron | 35.0% |
| !!! | GTTAAATAGTTTTGGACGTG+TGG | - | chr4_1:56187849-56187868 | Msa0557720:intron | 35.0% |
| TGGGAAACATGCATATAGTA+TGG | - | chr4_1:56187869-56187888 | Msa0557720:intron | 35.0% | |
| AAAAAATCCATGCCATAGTG+AGG | - | chr4_1:56187894-56187913 | Msa0557720:intron | 35.0% | |
| AAAAATCCATGCCATAGTGA+GGG | - | chr4_1:56187895-56187914 | Msa0557720:intron | 35.0% | |
| ! | GAGTAAGCTTCTTTTCTACT+TGG | - | chr4_1:56188035-56188054 | Msa0557720:intron | 35.0% |
| ! | TTATGCATTTTGCACTTTGC+AGG | - | chr4_1:56188066-56188085 | Msa0557720:intron | 35.0% |
| TAACCAAGTTCAAAACAGAG+AGG | + | chr4_1:56188173-56188192 | None:intergenic | 35.0% | |
| ! | AAAGGTGATAATGATCTTCC+AGG | - | chr4_1:56188201-56188220 | Msa0557720:intron | 35.0% |
| ! | AAGGTGATAATGATCTTCCA+GGG | - | chr4_1:56188202-56188221 | Msa0557720:intron | 35.0% |
| AATCAGAAACTTACCATCCT+TGG | + | chr4_1:56188355-56188374 | None:intergenic | 35.0% | |
| AGAAATGGTTACGATATTCG+TGG | + | chr4_1:56188378-56188397 | None:intergenic | 35.0% | |
| TCCTTATATTAAGGGTAGTG+GGG | - | chr4_1:56188405-56188424 | Msa0557720:intron | 35.0% | |
| AAACAGTTGTCCAAACTACT+AGG | - | chr4_1:56188461-56188480 | Msa0557720:CDS | 35.0% | |
| AACAGTTGTCCAAACTACTA+GGG | - | chr4_1:56188462-56188481 | Msa0557720:CDS | 35.0% | |
| AATCGCAAATTGTGAGGAAA+CGG | + | chr4_1:56188647-56188666 | None:intergenic | 35.0% | |
| CAAGAAGAAGAGAATTGCTA+AGG | - | chr4_1:56188833-56188852 | Msa0557720:intron | 35.0% | |
| AATTGCTAAGGCAAAATCAG+AGG | - | chr4_1:56188845-56188864 | Msa0557720:intron | 35.0% | |
| !! | TTCATTAGTCTTGTTCCATG+AGG | - | chr4_1:56189034-56189053 | Msa0557720:intron | 35.0% |
| !! | TCATTAGTCTTGTTCCATGA+GGG | - | chr4_1:56189035-56189054 | Msa0557720:intron | 35.0% |
| GTTTATCATTAACACCCTCA+TGG | + | chr4_1:56189052-56189071 | None:intergenic | 35.0% | |
| ! | CATCGCAACTTATAATGGAA+AGG | + | chr4_1:56189223-56189242 | None:intergenic | 35.0% |
| TGCGATGATTAACAATGAAC+AGG | - | chr4_1:56189236-56189255 | Msa0557720:intron | 35.0% | |
| !! | TGAACAGGTTTAGCTTGTAA+AGG | - | chr4_1:56189251-56189270 | Msa0557720:intron | 35.0% |
| AAAGGAATAAGTACAGCTGT+AGG | - | chr4_1:56189269-56189288 | Msa0557720:intron | 35.0% | |
| ATAAGTACAGCTGTAGGATT+AGG | - | chr4_1:56189275-56189294 | Msa0557720:intron | 35.0% | |
| ! | ACTGATATTTGGAGCCTGTT+TGG | - | chr4_1:56186908-56186927 | Msa0557720:CDS | 40.0% |
| ! | TATTTGGAGCCTGTTTGGAT+TGG | - | chr4_1:56186913-56186932 | Msa0557720:CDS | 40.0% |
| !! | GAAGTTCTTGGTGATGCTTT+GGG | - | chr4_1:56187309-56187328 | Msa0557720:intron | 40.0% |
| GGTTATGTCTTCAAGATCAC+TGG | - | chr4_1:56187440-56187459 | Msa0557720:CDS | 40.0% | |
| TATGTCTTCAAGATCACTGG+TGG | - | chr4_1:56187443-56187462 | Msa0557720:CDS | 40.0% | |
| ATGTCTTCAAGATCACTGGT+GGG | - | chr4_1:56187444-56187463 | Msa0557720:CDS | 40.0% | |
| TAAAGTTAGTGGAGACGTTG+AGG | + | chr4_1:56187805-56187824 | None:intergenic | 40.0% | |
| AAGTTCAAAACAGAGAGGTC+GGG | + | chr4_1:56188168-56188187 | None:intergenic | 40.0% | |
| CAAGTTCAAAACAGAGAGGT+CGG | + | chr4_1:56188169-56188188 | None:intergenic | 40.0% | |
| TTACTGATGTTGAGAAGCCA+AGG | - | chr4_1:56188226-56188245 | Msa0557720:intron | 40.0% | |
| ! | GTTGAACAGCTTACGGATTT+TGG | + | chr4_1:56188274-56188293 | None:intergenic | 40.0% |
| ! | TTGACAGGTTGAACAGCTTA+CGG | + | chr4_1:56188281-56188300 | None:intergenic | 40.0% |
| TAAGCTGTTCAACCTGTCAA+AGG | - | chr4_1:56188281-56188300 | Msa0557720:CDS | 40.0% | |
| ! | CCTTATATTAAGGGTAGTGG+GGG | - | chr4_1:56188406-56188425 | Msa0557720:intron | 40.0% |
| ACAGTTGTCCAAACTACTAG+GGG | - | chr4_1:56188463-56188482 | Msa0557720:CDS | 40.0% | |
| AAACGGCACTTCTTTCAAAC+GGG | + | chr4_1:56188630-56188649 | None:intergenic | 40.0% | |
| GAAACGGCACTTCTTTCAAA+CGG | + | chr4_1:56188631-56188650 | None:intergenic | 40.0% | |
| AAGGACAATCGCAAATTGTG+AGG | + | chr4_1:56188653-56188672 | None:intergenic | 40.0% | |
| ! | ATTTTACCGGATGTCACTGA+AGG | + | chr4_1:56188672-56188691 | None:intergenic | 40.0% |
| !! | AGTGGTTGTTGTTTGATTGC+AGG | - | chr4_1:56188729-56188748 | Msa0557720:intron | 40.0% |
| !! | GTGGTTGTTGTTTGATTGCA+GGG | - | chr4_1:56188730-56188749 | Msa0557720:intron | 40.0% |
| TTGTTTGATTGCAGGGAAGA+AGG | - | chr4_1:56188737-56188756 | Msa0557720:intron | 40.0% | |
| AGGACGAGATTCCAACATGA+AGG | - | chr4_1:56186452-56186471 | Msa0557720:three_prime_UTR | 45.0% | |
| TTCTTCTGACATCCAGTGGT+TGG | + | chr4_1:56186587-56186606 | None:intergenic | 45.0% | |
| AAGCTTCTTCTGACATCCAG+TGG | + | chr4_1:56186591-56186610 | None:intergenic | 45.0% | |
| TATATTGCAGCCGTGCTTTC+TGG | - | chr4_1:56187268-56187287 | Msa0557720:intron | 45.0% | |
| ATATTGCAGCCGTGCTTTCT+GGG | - | chr4_1:56187269-56187288 | Msa0557720:intron | 45.0% | |
| AGGATCTCACAGGAAGTTCT+TGG | - | chr4_1:56187297-56187316 | Msa0557720:intron | 45.0% | |
| !! | GGAAGTTCTTGGTGATGCTT+TGG | - | chr4_1:56187308-56187327 | Msa0557720:intron | 45.0% |
| ! | GTTGTGATTTTGCTCTCTGC+AGG | - | chr4_1:56187409-56187428 | Msa0557720:intron | 45.0% |
| TTGCTCTCTGCAGGAGTTTA+AGG | - | chr4_1:56187418-56187437 | Msa0557720:intron | 45.0% | |
| TGCTCTCTGCAGGAGTTTAA+GGG | - | chr4_1:56187419-56187438 | Msa0557720:intron | 45.0% | |
| ACAAGGATTCCCAATGAAGC+AGG | - | chr4_1:56187475-56187494 | Msa0557720:CDS | 45.0% | |
| CAAGGATTCCCAATGAAGCA+GGG | - | chr4_1:56187476-56187495 | Msa0557720:CDS | 45.0% | |
| TCAACACTCCCTGCTTCATT+GGG | + | chr4_1:56187487-56187506 | None:intergenic | 45.0% | |
| TATGGAGCAAGAGCCTAACA+CGG | + | chr4_1:56187517-56187536 | None:intergenic | 45.0% | |
| GCAACATACAGTATGCCGAA+AGG | + | chr4_1:56187581-56187600 | None:intergenic | 45.0% | |
| ! | TGGAGACGTTGAGGTATTTG+TGG | + | chr4_1:56187796-56187815 | None:intergenic | 45.0% |
| AGTTCAAAACAGAGAGGTCG+GGG | + | chr4_1:56188167-56188186 | None:intergenic | 45.0% | |
| !! | CGACCTCTCTGTTTTGAACT+TGG | - | chr4_1:56188167-56188186 | Msa0557720:intron | 45.0% |
| TTCTCAACATCAGTAAGCCC+TGG | + | chr4_1:56188222-56188241 | None:intergenic | 45.0% | |
| ! | CGGATTTTGGATGCTCTCTT+AGG | + | chr4_1:56188261-56188280 | None:intergenic | 45.0% |
| GCACATCATCATCCTTTGAC+AGG | + | chr4_1:56188296-56188315 | None:intergenic | 45.0% | |
| !! | CCTTGGTGGTGAAAGTTCTA+CGG | + | chr4_1:56188338-56188357 | None:intergenic | 45.0% |
| AGAACTTTCACCACCAAGGA+TGG | - | chr4_1:56188339-56188358 | Msa0557720:intron | 45.0% | |
| CAGAAACTTACCATCCTTGG+TGG | + | chr4_1:56188352-56188371 | None:intergenic | 45.0% | |
| CCCCCACTACCCTTAATATA+AGG | + | chr4_1:56188409-56188428 | None:intergenic | 45.0% | |
| CTATGAAGCCCCTAGTAGTT+TGG | + | chr4_1:56188474-56188493 | None:intergenic | 45.0% | |
| GATTGTCCTTCAGTGACATC+CGG | - | chr4_1:56188663-56188682 | Msa0557720:intron | 45.0% | |
| AGCTCCAAAGATACAGCGAT+TGG | - | chr4_1:56188767-56188786 | Msa0557720:intron | 45.0% | |
| GTGACCAATCGCTGTATCTT+TGG | + | chr4_1:56188774-56188793 | None:intergenic | 45.0% | |
| TCACTCCTTTGACACTCCAA+AGG | - | chr4_1:56188790-56188809 | Msa0557720:intron | 45.0% | |
| CAATTCTTGCTCGCTTCCTT+TGG | + | chr4_1:56188809-56188828 | None:intergenic | 45.0% | |
| ACTCCTTGCTTCCAGATTGA+AGG | - | chr4_1:56188884-56188903 | Msa0557720:intron | 45.0% | |
| TTCCAGATTGAAGGAGCAGA+GGG | - | chr4_1:56188893-56188912 | Msa0557720:intron | 45.0% | |
| TCTTAGCCAAGCTCTCACTT+CGG | + | chr4_1:56188923-56188942 | None:intergenic | 45.0% | |
| GCAGCTTACAGCTAGAGATA+TGG | - | chr4_1:56188987-56189006 | Msa0557720:intron | 45.0% | |
| CGGAAACTCTCTCTTGTGTG+CGG | + | chr4_1:56186419-56186438 | None:intergenic | 50.0% | |
| CACACAAGAGAGAGTTTCCG+CGG | - | chr4_1:56186419-56186438 | Msa0557720:three_prime_UTR | 50.0% | |
| AACGTTGCCAATCCAACCAC+TGG | - | chr4_1:56186572-56186591 | Msa0557720:three_prime_UTR | 50.0% | |
| CTGACATCCAGTGGTTGGAT+TGG | + | chr4_1:56186582-56186601 | None:intergenic | 50.0% | |
| TCCTCTTGTCCCAGAAAGCA+CGG | + | chr4_1:56187281-56187300 | None:intergenic | 50.0% | |
| ! | ACTGGTGGGTGTGACAAACA+AGG | - | chr4_1:56187458-56187477 | Msa0557720:CDS | 50.0% |
| GTCAACACTCCCTGCTTCAT+TGG | + | chr4_1:56187488-56187507 | None:intergenic | 50.0% | |
| GTTAGGCTCTTGCTCCATAG+AGG | - | chr4_1:56187518-56187537 | Msa0557720:CDS | 50.0% | |
| TCATGGACAGCCCTACCTTA+GGG | + | chr4_1:56187937-56187956 | None:intergenic | 50.0% | |
| ATCATGGACAGCCCTACCTT+AGG | + | chr4_1:56187938-56187957 | None:intergenic | 50.0% | |
| ! | ACTCCTTGTTTCCGTGGACA+CGG | - | chr4_1:56188090-56188109 | Msa0557720:intron | 50.0% |
| CGTAGAAGGAAGTCTGTTCG+TGG | - | chr4_1:56188129-56188148 | Msa0557720:intron | 50.0% | |
| GTTGAGAAGCCAAGGATGAG+AGG | - | chr4_1:56188234-56188253 | Msa0557720:intron | 50.0% | |
| CTCTTAGGACCTCTCATCCT+TGG | + | chr4_1:56188246-56188265 | None:intergenic | 50.0% | |
| GGTGGTGAAAGTTCTACGGT+AGG | + | chr4_1:56188334-56188353 | None:intergenic | 50.0% | |
| CCGTAGAACTTTCACCACCA+AGG | - | chr4_1:56188335-56188354 | Msa0557720:CDS | 50.0% | |
| !! | CGCTTCCTTTGGAGTGTCAA+AGG | + | chr4_1:56188798-56188817 | None:intergenic | 50.0% |
| GCTCCTTCAATCTGGAAGCA+AGG | + | chr4_1:56188890-56188909 | None:intergenic | 50.0% | |
| CTTCCAGATTGAAGGAGCAG+AGG | - | chr4_1:56188892-56188911 | Msa0557720:intron | 50.0% | |
| TTCCCTCTGCTCCTTCAATC+TGG | + | chr4_1:56188898-56188917 | None:intergenic | 50.0% | |
| GTGAGAGCTTGGCTAAGAAG+AGG | - | chr4_1:56188925-56188944 | Msa0557720:intron | 50.0% | |
| GCTGTAAGCTGCTTATGCTG+TGG | + | chr4_1:56188979-56188998 | None:intergenic | 50.0% | |
| CTGGGACAAGAGGATCTCAC+AGG | - | chr4_1:56187287-56187306 | Msa0557720:intron | 55.0% | |
| CATGGACAGCCCTACCTTAG+GGG | + | chr4_1:56187936-56187955 | None:intergenic | 55.0% | |
| ! | GCAGGAACTCCTTGTTTCCG+TGG | - | chr4_1:56188084-56188103 | Msa0557720:intron | 55.0% |
| CTTCCGTGTCCACGGAAACA+AGG | + | chr4_1:56188096-56188115 | None:intergenic | 55.0% | |
| CTTGTTTCCGTGGACACGGA+AGG | - | chr4_1:56188094-56188113 | Msa0557720:intron | 55.0% | |
| GGTCCAGACTATCCAGTGCT+AGG | - | chr4_1:56188946-56188965 | Msa0557720:intron | 55.0% | |
| ! | TGGCCTAGCACTGGATAGTC+TGG | + | chr4_1:56188952-56188971 | None:intergenic | 55.0% |
| GCTGCTTATGCTGTGGCAGA+TGG | + | chr4_1:56188972-56188991 | None:intergenic | 55.0% | |
| CAAGAGAGAGTTTCCGCGGC+TGG | - | chr4_1:56186423-56186442 | Msa0557720:three_prime_UTR | 60.0% | |
| GTTTCCGCGGCTGGATCAAG+AGG | - | chr4_1:56186432-56186451 | Msa0557720:three_prime_UTR | 60.0% | |
| TCGTCCTCTTGATCCAGCCG+CGG | + | chr4_1:56186439-56186458 | None:intergenic | 60.0% | |
| !! | GCCGTGCTTTCTGGGACAAG+AGG | - | chr4_1:56187277-56187296 | Msa0557720:intron | 60.0% |
| !! | AAGCAGGGAGTGTTGACCCC+TGG | - | chr4_1:56187491-56187510 | Msa0557720:CDS | 60.0% |
| TGTTGACCCCTGGCCGTGTT+AGG | - | chr4_1:56187501-56187520 | Msa0557720:CDS | 60.0% | |
| CAAGAGCCTAACACGGCCAG+GGG | + | chr4_1:56187510-56187529 | None:intergenic | 60.0% | |
| GCAAGAGCCTAACACGGCCA+GGG | + | chr4_1:56187511-56187530 | None:intergenic | 60.0% | |
| AGCAAGAGCCTAACACGGCC+AGG | + | chr4_1:56187512-56187531 | None:intergenic | 60.0% | |
| CCTTGGCCCTCACTATGGCA+TGG | + | chr4_1:56187904-56187923 | None:intergenic | 60.0% | |
| CCATGCCATAGTGAGGGCCA+AGG | - | chr4_1:56187901-56187920 | Msa0557720:intron | 60.0% | |
| ! | CCCTACCTTAGGGGAGGTGT+GGG | + | chr4_1:56187927-56187946 | None:intergenic | 60.0% |
| CCCACACCTCCCCTAAGGTA+GGG | - | chr4_1:56187924-56187943 | Msa0557720:intron | 60.0% | |
| CATTGCGCCTTCCGTGTCCA+CGG | + | chr4_1:56188104-56188123 | None:intergenic | 60.0% | |
| ! | GGCGCAATGGAGAGCGTAGA+AGG | - | chr4_1:56188115-56188134 | Msa0557720:intron | 60.0% |
| GGAACGCCGAAGTGAGAGCT+TGG | - | chr4_1:56188914-56188933 | Msa0557720:intron | 60.0% | |
| TGTGGCAGATGGCCTAGCAC+TGG | + | chr4_1:56188961-56188980 | None:intergenic | 60.0% | |
| GTGGGCCTTGGCCCTCACTA+TGG | + | chr4_1:56187909-56187928 | None:intergenic | 65.0% | |
| ! | CTTAGGGGAGGTGTGGGCCT+TGG | + | chr4_1:56187921-56187940 | None:intergenic | 65.0% |
| CAAGGCCCACACCTCCCCTA+AGG | - | chr4_1:56187919-56187938 | Msa0557720:intron | 65.0% | |
| GCCCACACCTCCCCTAAGGT+AGG | - | chr4_1:56187923-56187942 | Msa0557720:intron | 65.0% | |
| GCCCTACCTTAGGGGAGGTG+TGG | + | chr4_1:56187928-56187947 | None:intergenic | 65.0% | |
| GGACAGCCCTACCTTAGGGG+AGG | + | chr4_1:56187933-56187952 | None:intergenic | 65.0% | |
| ! | CGTGGACACGGAAGGCGCAA+TGG | - | chr4_1:56188102-56188121 | Msa0557720:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 56186403 | 56189383 | 56186403 | ID=Msa0557720;Name=Msa0557720 |
| chr4_1 | mRNA | 56186403 | 56189383 | 56186403 | ID=Msa0557720-mRNA-1;Parent=Msa0557720;Name=Msa0557720-mRNA-1;_AED=0.02;_eAED=0.02;_QI=65|1|1|1|1|1|6|397|248 |
| chr4_1 | exon | 56186403 | 56187035 | 56186403 | ID=Msa0557720-mRNA-1:exon:16832;Parent=Msa0557720-mRNA-1 |
| chr4_1 | exon | 56187426 | 56187698 | 56187426 | ID=Msa0557720-mRNA-1:exon:16831;Parent=Msa0557720-mRNA-1 |
| chr4_1 | exon | 56188247 | 56188355 | 56188247 | ID=Msa0557720-mRNA-1:exon:16830;Parent=Msa0557720-mRNA-1 |
| chr4_1 | exon | 56188451 | 56188508 | 56188451 | ID=Msa0557720-mRNA-1:exon:16829;Parent=Msa0557720-mRNA-1 |
| chr4_1 | exon | 56189153 | 56189217 | 56189153 | ID=Msa0557720-mRNA-1:exon:16828;Parent=Msa0557720-mRNA-1 |
| chr4_1 | exon | 56189313 | 56189383 | 56189313 | ID=Msa0557720-mRNA-1:exon:16827;Parent=Msa0557720-mRNA-1 |
| chr4_1 | five_prime_UTR | 56189319 | 56189383 | 56189319 | ID=Msa0557720-mRNA-1:five_prime_utr;Parent=Msa0557720-mRNA-1 |
| chr4_1 | CDS | 56189313 | 56189318 | 56189313 | ID=Msa0557720-mRNA-1:cds;Parent=Msa0557720-mRNA-1 |
| chr4_1 | CDS | 56189153 | 56189217 | 56189153 | ID=Msa0557720-mRNA-1:cds;Parent=Msa0557720-mRNA-1 |
| chr4_1 | CDS | 56188451 | 56188508 | 56188451 | ID=Msa0557720-mRNA-1:cds;Parent=Msa0557720-mRNA-1 |
| chr4_1 | CDS | 56188247 | 56188355 | 56188247 | ID=Msa0557720-mRNA-1:cds;Parent=Msa0557720-mRNA-1 |
| chr4_1 | CDS | 56187426 | 56187698 | 56187426 | ID=Msa0557720-mRNA-1:cds;Parent=Msa0557720-mRNA-1 |
| chr4_1 | CDS | 56186800 | 56187035 | 56186800 | ID=Msa0557720-mRNA-1:cds;Parent=Msa0557720-mRNA-1 |
| chr4_1 | three_prime_UTR | 56186403 | 56186799 | 56186403 | ID=Msa0557720-mRNA-1:three_prime_utr;Parent=Msa0557720-mRNA-1 |
| Gene Sequence |
| Protein sequence |
