AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0566290


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0566290 MtrunA17_Chr8g0380731 91.667 168 13 1 22 188 192 359 1.75e-103 301
Msa0566290 MtrunA17_Chr8g0380741 82.320 181 32 0 8 188 178 358 2.96e-101 296
Msa0566290 MtrunA17_Chr8g0380751 68.382 136 43 0 23 158 165 300 5.74e-57 181
Msa0566290 MtrunA17_Chr4g0030791 42.038 157 91 0 30 186 198 354 6.38e-40 139
Msa0566290 MtrunA17_Chr4g0030781 42.038 157 91 0 30 186 198 354 8.06e-40 138
Msa0566290 MtrunA17_Chr4g0014171 42.038 157 91 0 30 186 198 354 1.24e-39 138
Msa0566290 MtrunA17_Chr4g0036721 41.401 157 92 0 30 186 198 354 3.10e-39 137
Msa0566290 MtrunA17_Chr5g0405881 51.000 100 49 0 79 178 147 246 6.27e-31 113
Msa0566290 MtrunA17_Chr1g0185821 32.911 158 85 4 16 163 391 537 1.94e-14 70.9
Msa0566290 MtrunA17_Chr1g0185811 34.058 138 80 3 37 164 433 569 2.74e-13 67.4
Msa0566290 MtrunA17_Chr1g0185841 32.609 138 82 3 37 164 417 553 7.09e-12 63.2
Msa0566290 MtrunA17_Chr7g0261321 35.922 103 62 3 36 137 375 474 4.85e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0566290 AT2G28680.1 39.873 158 95 0 30 187 198 355 3.17e-35 127
Msa0566290 AT1G07750.1 38.462 156 94 1 30 185 198 351 4.25e-33 121
Msa0566290 AT5G44120.1 30.247 162 111 2 20 181 108 267 8.39e-13 65.5
Msa0566290 AT1G03890.1 27.907 172 113 2 16 187 288 448 9.13e-13 66.2
Msa0566290 AT5G44120.2 30.247 162 111 2 20 181 191 350 1.46e-12 65.5
Msa0566290 AT5G44120.3 30.247 162 111 2 20 181 295 454 2.11e-12 65.1
Msa0566290 AT4G28520.1 28.662 157 111 1 25 181 350 505 1.16e-11 63.2
Msa0566290 AT4G28520.3 29.747 158 105 2 24 181 283 434 2.45e-11 62.0

Find 49 sgRNAs with CRISPR-Local

Find 246 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGTGACTAATCCCACATTT+TGG 0.188452 4_1:-67337258 None:intergenic
ACTTGAACCTAATGCTATTA+AGG 0.231472 4_1:+67337342 Msa0566290:CDS
GCTGAATCCCAGGGGTAATT+AGG 0.249890 4_1:-67337375 None:intergenic
AACCCAACATCCTTAATAAA+AGG 0.256810 4_1:-67337301 None:intergenic
TGCTAAAACACCAGAAATTA+AGG 0.306120 4_1:+67337234 Msa0566290:CDS
AGGAAAATCTTTATCCGTTA+AGG 0.313076 4_1:-67337281 None:intergenic
TATAAACAAGTCAAACTAAA+TGG 0.345288 4_1:-67338740 None:intergenic
TTTGTGGTTGCTAAAGTTGC+TGG 0.378074 4_1:+67337508 Msa0566290:CDS
CAATGGATCGGGAGGATGTC+TGG 0.381692 4_1:+67336943 None:intergenic
ATAGAAATTGTGGGATTGAA+TGG 0.390973 4_1:+67337427 Msa0566290:CDS
GAAGGTGCCTTAATAGCATT+AGG 0.400052 4_1:-67337349 None:intergenic
CAGACCTTTGTTTGAAGAGT+TGG 0.408385 4_1:+67338591 Msa0566290:intron
ATTTACATTGCTAGAGGAAG+TGG 0.424012 4_1:+67337400 Msa0566290:CDS
GAGGATGTCTGGCCCACTCC+TGG 0.430092 4_1:+67336954 Msa0566290:CDS
CCGATGACCTGCAATGGATC+GGG 0.446310 4_1:+67336932 None:intergenic
TCCCCATTCTAATGTCTCTC+TGG 0.449411 4_1:-67338614 None:intergenic
GGCCAGAGAGACATTAGAAT+GGG 0.453478 4_1:+67338612 Msa0566290:CDS
GGGATTAGTCACAACCTTAA+CGG 0.468943 4_1:+67337267 Msa0566290:CDS
CCAGGGGTAATTAGGTTTGA+AGG 0.471443 4_1:-67337367 None:intergenic
GCTAAAGTTGCTGGTGAAGA+AGG 0.483064 4_1:+67337517 Msa0566290:CDS
CCTGGTCAACAAGGATATCC+TGG 0.492614 4_1:+67336972 Msa0566290:CDS
CCAGGATATCCTTGTTGACC+AGG 0.493488 4_1:-67336972 None:intergenic
TGTCTTGGATGCTCAAGTTA+AGG 0.494376 4_1:+67337456 Msa0566290:CDS
CATGCCGAGACCTGTCTACC+AGG 0.495145 4_1:-67336990 None:intergenic
CCTTCAAACCTAATTACCCC+TGG 0.503492 4_1:+67337367 Msa0566290:CDS
GCCGATGACCTGCAATGGAT+CGG 0.505270 4_1:+67336931 None:intergenic
AGAAATTAAGGCCCAAAATG+TGG 0.520443 4_1:+67337246 Msa0566290:CDS
ACAAGGATATCCTGGTAGAC+AGG 0.523943 4_1:+67336980 Msa0566290:CDS
ATGTAAATTAGCTGAATCCC+AGG 0.529324 4_1:-67337385 None:intergenic
AACAAGTCAAACTAAATGGT+AGG 0.531603 4_1:-67338736 None:intergenic
AAAGACACTTGTTGCACAGT+AGG 0.532747 4_1:-67338646 None:intergenic
ATTGAATGGAAAACGTGTCT+TGG 0.545710 4_1:+67337441 Msa0566290:CDS
TGGCCAGAGAGACATTAGAA+TGG 0.549115 4_1:+67338611 Msa0566290:CDS
TTGGATGCTCAAGTTAAGGC+TGG 0.552687 4_1:+67337460 Msa0566290:CDS
CAGCTAATTTACATTGCTAG+AGG 0.560034 4_1:+67337394 Msa0566290:CDS
CTTCAAACCTAATTACCCCT+GGG 0.564566 4_1:+67337368 Msa0566290:CDS
AGTTGCTGGTGAAGAAGGAA+TGG 0.570497 4_1:+67337522 Msa0566290:CDS
ACAAGTCAAACTAAATGGTA+GGG 0.575189 4_1:-67338735 None:intergenic
GAAATTAAGGCCCAAAATGT+GGG 0.582914 4_1:+67337247 Msa0566290:CDS
ATATCCTTGTTGACCAGGAG+TGG 0.587100 4_1:-67336967 None:intergenic
TGGCCCACTCCTGGTCAACA+AGG 0.599681 4_1:+67336963 Msa0566290:CDS
TATCCTTGTTGACCAGGAGT+GGG 0.613043 4_1:-67336966 None:intergenic
CTGGCCAACTCTTCAAACAA+AGG 0.618124 4_1:-67338595 None:intergenic
GGTAGGGAGAATGAGACTTG+TGG 0.625569 4_1:-67338719 None:intergenic
ATGACCTGCAATGGATCGGG+AGG 0.634795 4_1:+67336935 None:intergenic
TGTAAATTAGCTGAATCCCA+GGG 0.639342 4_1:-67337384 None:intergenic
TTGTTGCACAGTAGGTGACA+AGG 0.665977 4_1:-67338638 None:intergenic
GCCAGAGAGACATTAGAATG+GGG 0.702752 4_1:+67338613 Msa0566290:CDS
GTAAATTAGCTGAATCCCAG+GGG 0.719018 4_1:-67337383 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATTTTACTTTTTAATTGA+GGG - chr4_1:67337877-67337896 None:intergenic 10.0%
!!! TAAATTTTACTTTTTAATTG+AGG - chr4_1:67337878-67337897 None:intergenic 10.0%
!! AATGCATATTTAATTATTAA+GGG - chr4_1:67337941-67337960 None:intergenic 10.0%
!! TAATGCATATTTAATTATTA+AGG - chr4_1:67337942-67337961 None:intergenic 10.0%
!!! ATGAATTAATTTTTCTTAAA+TGG - chr4_1:67338023-67338042 None:intergenic 10.0%
!!! CACATATTTTAAATTTATTT+TGG + chr4_1:67338161-67338180 Msa0566290:intron 10.0%
!! AGAAATAAAAAAATATATTG+AGG + chr4_1:67338346-67338365 Msa0566290:intron 10.0%
!! GAAATAAAAAAATATATTGA+GGG + chr4_1:67338347-67338366 Msa0566290:intron 10.0%
!!! AAATTTTACTTTTTAATTGA+GGG - chr4_1:67337877-67337896 None:intergenic 10.0%
!!! TAAATTTTACTTTTTAATTG+AGG - chr4_1:67337878-67337897 None:intergenic 10.0%
!! AATGCATATTTAATTATTAA+GGG - chr4_1:67337941-67337960 None:intergenic 10.0%
!! TAATGCATATTTAATTATTA+AGG - chr4_1:67337942-67337961 None:intergenic 10.0%
!!! ATGAATTAATTTTTCTTAAA+TGG - chr4_1:67338023-67338042 None:intergenic 10.0%
!!! CACATATTTTAAATTTATTT+TGG + chr4_1:67338161-67338180 Msa0566290:intron 10.0%
!! AGAAATAAAAAAATATATTG+AGG + chr4_1:67338346-67338365 Msa0566290:intron 10.0%
!! GAAATAAAAAAATATATTGA+GGG + chr4_1:67338347-67338366 Msa0566290:intron 10.0%
!!! TAAAGATTTTCCTTTTATTA+AGG + chr4_1:67337291-67337310 Msa0566290:CDS 15.0%
!!! ATTTGAAATTATTTTCGATT+TGG + chr4_1:67337747-67337766 Msa0566290:intron 15.0%
!!! AATTAATTTTTCTTAAATGG+TGG - chr4_1:67338020-67338039 None:intergenic 15.0%
!! TGAAATTGTGAATAAAAAAT+AGG + chr4_1:67338226-67338245 Msa0566290:intron 15.0%
!! GAAATTGTGAATAAAAAATA+GGG + chr4_1:67338227-67338246 Msa0566290:intron 15.0%
!!! TTTTCTAATATGTTTTGAAT+AGG + chr4_1:67338445-67338464 Msa0566290:intron 15.0%
!!! TTTCTAATATGTTTTGAATA+GGG + chr4_1:67338446-67338465 Msa0566290:intron 15.0%
!!! TAAAGATTTTCCTTTTATTA+AGG + chr4_1:67337291-67337310 Msa0566290:CDS 15.0%
!!! ATTTGAAATTATTTTCGATT+TGG + chr4_1:67337747-67337766 Msa0566290:intron 15.0%
!!! AATTAATTTTTCTTAAATGG+TGG - chr4_1:67338020-67338039 None:intergenic 15.0%
!! TGAAATTGTGAATAAAAAAT+AGG + chr4_1:67338226-67338245 Msa0566290:intron 15.0%
!! GAAATTGTGAATAAAAAATA+GGG + chr4_1:67338227-67338246 Msa0566290:intron 15.0%
!!! TTTTCTAATATGTTTTGAAT+AGG + chr4_1:67338445-67338464 Msa0566290:intron 15.0%
!!! TTTCTAATATGTTTTGAATA+GGG + chr4_1:67338446-67338465 Msa0566290:intron 15.0%
!! TGAATGAAAATTGAATTCTT+CGG - chr4_1:67337682-67337701 None:intergenic 20.0%
!!! TTTTGATTCACAAATCAATT+TGG + chr4_1:67337713-67337732 Msa0566290:intron 20.0%
!!! TGTATATTTTAACATAAGAG+AGG - chr4_1:67337851-67337870 None:intergenic 20.0%
!! TATTTAATTATTAAGGGAGA+GGG - chr4_1:67337935-67337954 None:intergenic 20.0%
!! ATATTTAATTATTAAGGGAG+AGG - chr4_1:67337936-67337955 None:intergenic 20.0%
!!! TTCTAATATGTTTTGAATAG+GGG + chr4_1:67338447-67338466 Msa0566290:intron 20.0%
!! TGAATGAAAATTGAATTCTT+CGG - chr4_1:67337682-67337701 None:intergenic 20.0%
!!! TTTTGATTCACAAATCAATT+TGG + chr4_1:67337713-67337732 Msa0566290:intron 20.0%
!!! TGTATATTTTAACATAAGAG+AGG - chr4_1:67337851-67337870 None:intergenic 20.0%
!! TATTTAATTATTAAGGGAGA+GGG - chr4_1:67337935-67337954 None:intergenic 20.0%
!! ATATTTAATTATTAAGGGAG+AGG - chr4_1:67337936-67337955 None:intergenic 20.0%
!!! TTCTAATATGTTTTGAATAG+GGG + chr4_1:67338447-67338466 Msa0566290:intron 20.0%
! TTAACATGCGTTAGTTATAA+CGG - chr4_1:67337114-67337133 None:intergenic 25.0%
!! TTTCCTTTTATTAAGGATGT+TGG + chr4_1:67337298-67337317 Msa0566290:CDS 25.0%
!! TTCCTTTTATTAAGGATGTT+GGG + chr4_1:67337299-67337318 Msa0566290:CDS 25.0%
! AAGTGGAAAAATAGAAATTG+TGG + chr4_1:67337417-67337436 Msa0566290:CDS 25.0%
! AGTGGAAAAATAGAAATTGT+GGG + chr4_1:67337418-67337437 Msa0566290:CDS 25.0%
!!! TATTTTAACATAAGAGAGGA+GGG - chr4_1:67338480-67338499 None:intergenic 25.0%
!!! ATATTTTAACATAAGAGAGG+AGG - chr4_1:67338479-67338498 None:intergenic 25.0%
! TGTAATTCAAGCATCTTATA+AGG - chr4_1:67337911-67337930 None:intergenic 25.0%
! TTACTAAAGACAATAAAGCA+TGG - chr4_1:67338136-67338155 None:intergenic 25.0%
! TTCACAATTTCATTAACACA+TGG - chr4_1:67338218-67338237 None:intergenic 25.0%
! ATTCGAAAAAATTAGTATCG+CGG - chr4_1:67338293-67338312 None:intergenic 25.0%
!!! AGTGTAGATTTTAACATAAG+AGG + chr4_1:67338375-67338394 Msa0566290:intron 25.0%
!!! GTGTAGATTTTAACATAAGA+GGG + chr4_1:67338376-67338395 Msa0566290:intron 25.0%
!!! TGTAGATTTTAACATAAGAG+GGG + chr4_1:67338377-67338396 Msa0566290:intron 25.0%
!!! TCTAATATGTTTTGAATAGG+GGG + chr4_1:67338448-67338467 Msa0566290:intron 25.0%
!!! TGCATATTTTAACATAAGAG+AGG + chr4_1:67338476-67338495 Msa0566290:intron 25.0%
!!! TATTTTAACATAAGAGAGGA+TGG + chr4_1:67338480-67338499 Msa0566290:intron 25.0%
! TTAACATGCGTTAGTTATAA+CGG - chr4_1:67337114-67337133 None:intergenic 25.0%
!! TTTCCTTTTATTAAGGATGT+TGG + chr4_1:67337298-67337317 Msa0566290:CDS 25.0%
!! TTCCTTTTATTAAGGATGTT+GGG + chr4_1:67337299-67337318 Msa0566290:CDS 25.0%
! AAGTGGAAAAATAGAAATTG+TGG + chr4_1:67337417-67337436 Msa0566290:CDS 25.0%
! AGTGGAAAAATAGAAATTGT+GGG + chr4_1:67337418-67337437 Msa0566290:CDS 25.0%
!!! TATTTTAACATAAGAGAGGA+GGG - chr4_1:67338480-67338499 None:intergenic 25.0%
!!! ATATTTTAACATAAGAGAGG+AGG - chr4_1:67338479-67338498 None:intergenic 25.0%
! TGTAATTCAAGCATCTTATA+AGG - chr4_1:67337911-67337930 None:intergenic 25.0%
! TTACTAAAGACAATAAAGCA+TGG - chr4_1:67338136-67338155 None:intergenic 25.0%
! TTCACAATTTCATTAACACA+TGG - chr4_1:67338218-67338237 None:intergenic 25.0%
! ATTCGAAAAAATTAGTATCG+CGG - chr4_1:67338293-67338312 None:intergenic 25.0%
!!! AGTGTAGATTTTAACATAAG+AGG + chr4_1:67338375-67338394 Msa0566290:intron 25.0%
!!! GTGTAGATTTTAACATAAGA+GGG + chr4_1:67338376-67338395 Msa0566290:intron 25.0%
!!! TGTAGATTTTAACATAAGAG+GGG + chr4_1:67338377-67338396 Msa0566290:intron 25.0%
!!! TCTAATATGTTTTGAATAGG+GGG + chr4_1:67338448-67338467 Msa0566290:intron 25.0%
!!! TGCATATTTTAACATAAGAG+AGG + chr4_1:67338476-67338495 Msa0566290:intron 25.0%
!!! TATTTTAACATAAGAGAGGA+TGG + chr4_1:67338480-67338499 Msa0566290:intron 25.0%
TGCTAAAACACCAGAAATTA+AGG + chr4_1:67337234-67337253 Msa0566290:CDS 30.0%
AGGAAAATCTTTATCCGTTA+AGG - chr4_1:67337284-67337303 None:intergenic 30.0%
AACCCAACATCCTTAATAAA+AGG - chr4_1:67337304-67337323 None:intergenic 30.0%
ACTTGAACCTAATGCTATTA+AGG + chr4_1:67337342-67337361 Msa0566290:CDS 30.0%
ATAGAAATTGTGGGATTGAA+TGG + chr4_1:67337427-67337446 Msa0566290:CDS 30.0%
TTAGCAACCACAAAAAATTG+TGG - chr4_1:67337502-67337521 None:intergenic 30.0%
! GTTTAAAACTCCAACTTACT+TGG - chr4_1:67337572-67337591 None:intergenic 30.0%
!! ATTTTAACATAAGAGAGGAG+GGG - chr4_1:67337846-67337865 None:intergenic 30.0%
TTCAAGCATCTTATAAGGAA+GGG - chr4_1:67337906-67337925 None:intergenic 30.0%
ATTCAAGCATCTTATAAGGA+AGG - chr4_1:67337907-67337926 None:intergenic 30.0%
TTCGAAAAAATTAGTATCGC+GGG - chr4_1:67338292-67338311 None:intergenic 30.0%
TGTAATTCAAGCTTCTCTTA+AGG + chr4_1:67338407-67338426 Msa0566290:intron 30.0%
GTAATTCAAGCTTCTCTTAA+GGG + chr4_1:67338408-67338427 Msa0566290:intron 30.0%
!! CTAATATGTTTTGAATAGGG+GGG + chr4_1:67338449-67338468 Msa0566290:intron 30.0%
!! TAATATGTTTTGAATAGGGG+GGG + chr4_1:67338450-67338469 Msa0566290:intron 30.0%
GTAATACAAGTATCTTTGAG+AGG + chr4_1:67338507-67338526 Msa0566290:intron 30.0%
TGCTAAAACACCAGAAATTA+AGG + chr4_1:67337234-67337253 Msa0566290:CDS 30.0%
AGGAAAATCTTTATCCGTTA+AGG - chr4_1:67337284-67337303 None:intergenic 30.0%
AACCCAACATCCTTAATAAA+AGG - chr4_1:67337304-67337323 None:intergenic 30.0%
ACTTGAACCTAATGCTATTA+AGG + chr4_1:67337342-67337361 Msa0566290:CDS 30.0%
ATAGAAATTGTGGGATTGAA+TGG + chr4_1:67337427-67337446 Msa0566290:CDS 30.0%
TTAGCAACCACAAAAAATTG+TGG - chr4_1:67337502-67337521 None:intergenic 30.0%
! GTTTAAAACTCCAACTTACT+TGG - chr4_1:67337572-67337591 None:intergenic 30.0%
!! ATTTTAACATAAGAGAGGAG+GGG - chr4_1:67337846-67337865 None:intergenic 30.0%
TTCAAGCATCTTATAAGGAA+GGG - chr4_1:67337906-67337925 None:intergenic 30.0%
ATTCAAGCATCTTATAAGGA+AGG - chr4_1:67337907-67337926 None:intergenic 30.0%
TTCGAAAAAATTAGTATCGC+GGG - chr4_1:67338292-67338311 None:intergenic 30.0%
TGTAATTCAAGCTTCTCTTA+AGG + chr4_1:67338407-67338426 Msa0566290:intron 30.0%
GTAATTCAAGCTTCTCTTAA+GGG + chr4_1:67338408-67338427 Msa0566290:intron 30.0%
!! CTAATATGTTTTGAATAGGG+GGG + chr4_1:67338449-67338468 Msa0566290:intron 30.0%
!! TAATATGTTTTGAATAGGGG+GGG + chr4_1:67338450-67338469 Msa0566290:intron 30.0%
GTAATACAAGTATCTTTGAG+AGG + chr4_1:67338507-67338526 Msa0566290:intron 30.0%
TGTGAATGAGCATTACTGTT+TGG + chr4_1:67337183-67337202 Msa0566290:intron 35.0%
GTGAATGAGCATTACTGTTT+GGG + chr4_1:67337184-67337203 Msa0566290:intron 35.0%
! ACATTTTGGGCCTTAATTTC+TGG - chr4_1:67337247-67337266 None:intergenic 35.0%
AGAAATTAAGGCCCAAAATG+TGG + chr4_1:67337246-67337265 Msa0566290:CDS 35.0%
GAAATTAAGGCCCAAAATGT+GGG + chr4_1:67337247-67337266 Msa0566290:CDS 35.0%
! TGTGACTAATCCCACATTTT+GGG - chr4_1:67337260-67337279 None:intergenic 35.0%
! TTGTGACTAATCCCACATTT+TGG - chr4_1:67337261-67337280 None:intergenic 35.0%
TGTAAATTAGCTGAATCCCA+GGG - chr4_1:67337387-67337406 None:intergenic 35.0%
ATGTAAATTAGCTGAATCCC+AGG - chr4_1:67337388-67337407 None:intergenic 35.0%
CAGCTAATTTACATTGCTAG+AGG + chr4_1:67337394-67337413 Msa0566290:CDS 35.0%
ATTTACATTGCTAGAGGAAG+TGG + chr4_1:67337400-67337419 Msa0566290:CDS 35.0%
ATTGAATGGAAAACGTGTCT+TGG + chr4_1:67337441-67337460 Msa0566290:CDS 35.0%
!!! TGTTGTGCCACAATTTTTTG+TGG + chr4_1:67337492-67337511 Msa0566290:CDS 35.0%
! CGATTTGGAGTACGTTATTA+AGG + chr4_1:67337762-67337781 Msa0566290:intron 35.0%
! TCAAGCATCTTTAAAGAGAG+TGG - chr4_1:67337815-67337834 None:intergenic 35.0%
TCAAGCATCTTATAAGGAAG+GGG - chr4_1:67337905-67337924 None:intergenic 35.0%
!! AGATTTTAACATAAGAGGGG+AGG + chr4_1:67338380-67338399 Msa0566290:intron 35.0%
!! GATTTTAACATAAGAGGGGA+GGG + chr4_1:67338381-67338400 Msa0566290:intron 35.0%
!! AATATGTTTTGAATAGGGGG+GGG + chr4_1:67338451-67338470 Msa0566290:intron 35.0%
! ATACAAGTATCTTTGAGAGG+AGG + chr4_1:67338510-67338529 Msa0566290:intron 35.0%
! TACAAGTATCTTTGAGAGGA+GGG + chr4_1:67338511-67338530 Msa0566290:intron 35.0%
TGTGAATGAGCATTACTGTT+TGG + chr4_1:67337183-67337202 Msa0566290:intron 35.0%
GTGAATGAGCATTACTGTTT+GGG + chr4_1:67337184-67337203 Msa0566290:intron 35.0%
! ACATTTTGGGCCTTAATTTC+TGG - chr4_1:67337247-67337266 None:intergenic 35.0%
AGAAATTAAGGCCCAAAATG+TGG + chr4_1:67337246-67337265 Msa0566290:CDS 35.0%
GAAATTAAGGCCCAAAATGT+GGG + chr4_1:67337247-67337266 Msa0566290:CDS 35.0%
! TGTGACTAATCCCACATTTT+GGG - chr4_1:67337260-67337279 None:intergenic 35.0%
! TTGTGACTAATCCCACATTT+TGG - chr4_1:67337261-67337280 None:intergenic 35.0%
TGTAAATTAGCTGAATCCCA+GGG - chr4_1:67337387-67337406 None:intergenic 35.0%
ATGTAAATTAGCTGAATCCC+AGG - chr4_1:67337388-67337407 None:intergenic 35.0%
CAGCTAATTTACATTGCTAG+AGG + chr4_1:67337394-67337413 Msa0566290:CDS 35.0%
ATTTACATTGCTAGAGGAAG+TGG + chr4_1:67337400-67337419 Msa0566290:CDS 35.0%
ATTGAATGGAAAACGTGTCT+TGG + chr4_1:67337441-67337460 Msa0566290:CDS 35.0%
!!! TGTTGTGCCACAATTTTTTG+TGG + chr4_1:67337492-67337511 Msa0566290:CDS 35.0%
! CGATTTGGAGTACGTTATTA+AGG + chr4_1:67337762-67337781 Msa0566290:intron 35.0%
! TCAAGCATCTTTAAAGAGAG+TGG - chr4_1:67337815-67337834 None:intergenic 35.0%
TCAAGCATCTTATAAGGAAG+GGG - chr4_1:67337905-67337924 None:intergenic 35.0%
!! AGATTTTAACATAAGAGGGG+AGG + chr4_1:67338380-67338399 Msa0566290:intron 35.0%
!! GATTTTAACATAAGAGGGGA+GGG + chr4_1:67338381-67338400 Msa0566290:intron 35.0%
!! AATATGTTTTGAATAGGGGG+GGG + chr4_1:67338451-67338470 Msa0566290:intron 35.0%
! ATACAAGTATCTTTGAGAGG+AGG + chr4_1:67338510-67338529 Msa0566290:intron 35.0%
! TACAAGTATCTTTGAGAGGA+GGG + chr4_1:67338511-67338530 Msa0566290:intron 35.0%
TTACTGTTTGGGTAAAGAGC+AGG + chr4_1:67337195-67337214 Msa0566290:intron 40.0%
!! GGGATTAGTCACAACCTTAA+CGG + chr4_1:67337267-67337286 Msa0566290:CDS 40.0%
!! GAAGGTGCCTTAATAGCATT+AGG - chr4_1:67337352-67337371 None:intergenic 40.0%
CTTCAAACCTAATTACCCCT+GGG + chr4_1:67337368-67337387 Msa0566290:CDS 40.0%
GTAAATTAGCTGAATCCCAG+GGG - chr4_1:67337386-67337405 None:intergenic 40.0%
TGTCTTGGATGCTCAAGTTA+AGG + chr4_1:67337456-67337475 Msa0566290:CDS 40.0%
TTTGTGGTTGCTAAAGTTGC+TGG + chr4_1:67337508-67337527 Msa0566290:CDS 40.0%
GTGACAACTACCAAGTAAGT+TGG + chr4_1:67337559-67337578 Msa0566290:intron 40.0%
ATTCAAGCTTCTCTTAAGGG+AGG + chr4_1:67338411-67338430 Msa0566290:intron 40.0%
TTCAAGCTTCTCTTAAGGGA+GGG + chr4_1:67338412-67338431 Msa0566290:intron 40.0%
! CAGACCTTTGTTTGAAGAGT+TGG + chr4_1:67338591-67338610 Msa0566290:intron 40.0%
! AAAGACACTTGTTGCACAGT+AGG - chr4_1:67338649-67338668 None:intergenic 40.0%
! GCAACAAGTGTCTTTTAACG+TGG + chr4_1:67338654-67338673 Msa0566290:CDS 40.0%
TTACTGTTTGGGTAAAGAGC+AGG + chr4_1:67337195-67337214 Msa0566290:intron 40.0%
!! GGGATTAGTCACAACCTTAA+CGG + chr4_1:67337267-67337286 Msa0566290:CDS 40.0%
!! GAAGGTGCCTTAATAGCATT+AGG - chr4_1:67337352-67337371 None:intergenic 40.0%
CTTCAAACCTAATTACCCCT+GGG + chr4_1:67337368-67337387 Msa0566290:CDS 40.0%
GTAAATTAGCTGAATCCCAG+GGG - chr4_1:67337386-67337405 None:intergenic 40.0%
TGTCTTGGATGCTCAAGTTA+AGG + chr4_1:67337456-67337475 Msa0566290:CDS 40.0%
TTTGTGGTTGCTAAAGTTGC+TGG + chr4_1:67337508-67337527 Msa0566290:CDS 40.0%
GTGACAACTACCAAGTAAGT+TGG + chr4_1:67337559-67337578 Msa0566290:intron 40.0%
ATTCAAGCTTCTCTTAAGGG+AGG + chr4_1:67338411-67338430 Msa0566290:intron 40.0%
TTCAAGCTTCTCTTAAGGGA+GGG + chr4_1:67338412-67338431 Msa0566290:intron 40.0%
! CAGACCTTTGTTTGAAGAGT+TGG + chr4_1:67338591-67338610 Msa0566290:intron 40.0%
! AAAGACACTTGTTGCACAGT+AGG - chr4_1:67338649-67338668 None:intergenic 40.0%
! GCAACAAGTGTCTTTTAACG+TGG + chr4_1:67338654-67338673 Msa0566290:CDS 40.0%
TATCCTTGTTGACCAGGAGT+GGG - chr4_1:67336969-67336988 None:intergenic 45.0%
ATATCCTTGTTGACCAGGAG+TGG - chr4_1:67336970-67336989 None:intergenic 45.0%
ACAAGGATATCCTGGTAGAC+AGG + chr4_1:67336980-67336999 Msa0566290:CDS 45.0%
ATATCCTGGTAGACAGGTCT+CGG + chr4_1:67336986-67337005 Msa0566290:intron 45.0%
TTGCGCAGCGTTACTTAAGT+TGG - chr4_1:67337058-67337077 None:intergenic 45.0%
!! CTAACGCATGTTAACTTGCG+TGG + chr4_1:67337120-67337139 Msa0566290:intron 45.0%
CCAGGGGTAATTAGGTTTGA+AGG - chr4_1:67337370-67337389 None:intergenic 45.0%
CCTTCAAACCTAATTACCCC+TGG + chr4_1:67337367-67337386 Msa0566290:CDS 45.0%
TTGGATGCTCAAGTTAAGGC+TGG + chr4_1:67337460-67337479 Msa0566290:CDS 45.0%
GCTAAAGTTGCTGGTGAAGA+AGG + chr4_1:67337517-67337536 Msa0566290:CDS 45.0%
AGTTGCTGGTGAAGAAGGAA+TGG + chr4_1:67337522-67337541 Msa0566290:CDS 45.0%
TCAAGCTTCTCTTAAGGGAG+GGG + chr4_1:67338413-67338432 Msa0566290:intron 45.0%
CTGGCCAACTCTTCAAACAA+AGG - chr4_1:67338598-67338617 None:intergenic 45.0%
TGGCCAGAGAGACATTAGAA+TGG + chr4_1:67338611-67338630 Msa0566290:CDS 45.0%
GGCCAGAGAGACATTAGAAT+GGG + chr4_1:67338612-67338631 Msa0566290:CDS 45.0%
GCCAGAGAGACATTAGAATG+GGG + chr4_1:67338613-67338632 Msa0566290:CDS 45.0%
TCCCCATTCTAATGTCTCTC+TGG - chr4_1:67338617-67338636 None:intergenic 45.0%
TTGTTGCACAGTAGGTGACA+AGG - chr4_1:67338641-67338660 None:intergenic 45.0%
TATCCTTGTTGACCAGGAGT+GGG - chr4_1:67336969-67336988 None:intergenic 45.0%
ATATCCTTGTTGACCAGGAG+TGG - chr4_1:67336970-67336989 None:intergenic 45.0%
ACAAGGATATCCTGGTAGAC+AGG + chr4_1:67336980-67336999 Msa0566290:CDS 45.0%
ATATCCTGGTAGACAGGTCT+CGG + chr4_1:67336986-67337005 Msa0566290:intron 45.0%
TTGCGCAGCGTTACTTAAGT+TGG - chr4_1:67337058-67337077 None:intergenic 45.0%
!! CTAACGCATGTTAACTTGCG+TGG + chr4_1:67337120-67337139 Msa0566290:intron 45.0%
CCAGGGGTAATTAGGTTTGA+AGG - chr4_1:67337370-67337389 None:intergenic 45.0%
CCTTCAAACCTAATTACCCC+TGG + chr4_1:67337367-67337386 Msa0566290:CDS 45.0%
TTGGATGCTCAAGTTAAGGC+TGG + chr4_1:67337460-67337479 Msa0566290:CDS 45.0%
GCTAAAGTTGCTGGTGAAGA+AGG + chr4_1:67337517-67337536 Msa0566290:CDS 45.0%
AGTTGCTGGTGAAGAAGGAA+TGG + chr4_1:67337522-67337541 Msa0566290:CDS 45.0%
TCAAGCTTCTCTTAAGGGAG+GGG + chr4_1:67338413-67338432 Msa0566290:intron 45.0%
CTGGCCAACTCTTCAAACAA+AGG - chr4_1:67338598-67338617 None:intergenic 45.0%
TGGCCAGAGAGACATTAGAA+TGG + chr4_1:67338611-67338630 Msa0566290:CDS 45.0%
GGCCAGAGAGACATTAGAAT+GGG + chr4_1:67338612-67338631 Msa0566290:CDS 45.0%
GCCAGAGAGACATTAGAATG+GGG + chr4_1:67338613-67338632 Msa0566290:CDS 45.0%
TCCCCATTCTAATGTCTCTC+TGG - chr4_1:67338617-67338636 None:intergenic 45.0%
TTGTTGCACAGTAGGTGACA+AGG - chr4_1:67338641-67338660 None:intergenic 45.0%
!!! ACATATTTTAAATTTATTTT+GGG + chr4_1:67338162-67338181 Msa0566290:intron 5.0%
!!! ACATATTTTAAATTTATTTT+GGG + chr4_1:67338162-67338181 Msa0566290:intron 5.0%
CCAGGATATCCTTGTTGACC+AGG - chr4_1:67336975-67336994 None:intergenic 50.0%
CCTGGTCAACAAGGATATCC+TGG + chr4_1:67336972-67336991 Msa0566290:CDS 50.0%
GGTCTCGGCATGACAATATC+AGG + chr4_1:67337001-67337020 Msa0566290:intron 50.0%
GGCATGACAATATCAGGCTC+TGG + chr4_1:67337007-67337026 Msa0566290:intron 50.0%
!! ACAATATCAGGCTCTGGAGC+AGG + chr4_1:67337013-67337032 Msa0566290:intron 50.0%
!! CAATATCAGGCTCTGGAGCA+GGG + chr4_1:67337014-67337033 Msa0566290:intron 50.0%
TGGCGTGAGTTAACATGCGT+AGG + chr4_1:67337140-67337159 Msa0566290:intron 50.0%
GGCGTGAGTTAACATGCGTA+GGG + chr4_1:67337141-67337160 Msa0566290:intron 50.0%
GCGTGAGTTAACATGCGTAG+GGG + chr4_1:67337142-67337161 Msa0566290:intron 50.0%
!! TAACATGCGTAGGGGCGTTA+AGG + chr4_1:67337150-67337169 Msa0566290:intron 50.0%
GCTGAATCCCAGGGGTAATT+AGG - chr4_1:67337378-67337397 None:intergenic 50.0%
GGTAGGGAGAATGAGACTTG+TGG - chr4_1:67338722-67338741 None:intergenic 50.0%
CCAGGATATCCTTGTTGACC+AGG - chr4_1:67336975-67336994 None:intergenic 50.0%
CCTGGTCAACAAGGATATCC+TGG + chr4_1:67336972-67336991 Msa0566290:CDS 50.0%
GGTCTCGGCATGACAATATC+AGG + chr4_1:67337001-67337020 Msa0566290:intron 50.0%
GGCATGACAATATCAGGCTC+TGG + chr4_1:67337007-67337026 Msa0566290:intron 50.0%
!! ACAATATCAGGCTCTGGAGC+AGG + chr4_1:67337013-67337032 Msa0566290:intron 50.0%
!! CAATATCAGGCTCTGGAGCA+GGG + chr4_1:67337014-67337033 Msa0566290:intron 50.0%
TGGCGTGAGTTAACATGCGT+AGG + chr4_1:67337140-67337159 Msa0566290:intron 50.0%
GGCGTGAGTTAACATGCGTA+GGG + chr4_1:67337141-67337160 Msa0566290:intron 50.0%
GCGTGAGTTAACATGCGTAG+GGG + chr4_1:67337142-67337161 Msa0566290:intron 50.0%
!! TAACATGCGTAGGGGCGTTA+AGG + chr4_1:67337150-67337169 Msa0566290:intron 50.0%
GCTGAATCCCAGGGGTAATT+AGG - chr4_1:67337378-67337397 None:intergenic 50.0%
GGTAGGGAGAATGAGACTTG+TGG - chr4_1:67338722-67338741 None:intergenic 50.0%
TGGCCCACTCCTGGTCAACA+AGG + chr4_1:67336963-67336982 Msa0566290:CDS 60.0%
CATGCCGAGACCTGTCTACC+AGG - chr4_1:67336993-67337012 None:intergenic 60.0%
CTGGAGCAGGGTTGCTGTGT+TGG + chr4_1:67337026-67337045 Msa0566290:intron 60.0%
TGGCCCACTCCTGGTCAACA+AGG + chr4_1:67336963-67336982 Msa0566290:CDS 60.0%
CATGCCGAGACCTGTCTACC+AGG - chr4_1:67336993-67337012 None:intergenic 60.0%
CTGGAGCAGGGTTGCTGTGT+TGG + chr4_1:67337026-67337045 Msa0566290:intron 60.0%
GAGGATGTCTGGCCCACTCC+TGG + chr4_1:67336954-67336973 Msa0566290:CDS 65.0%
GAGGATGTCTGGCCCACTCC+TGG + chr4_1:67336954-67336973 Msa0566290:CDS 65.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 67336945 67338747 67336945 ID=Msa0566290;Name=Msa0566290
chr4_1 mRNA 67336945 67338747 67336945 ID=Msa0566290-mRNA-1;Parent=Msa0566290;Name=Msa0566290-mRNA-1;_AED=0.49;_eAED=0.49;_QI=0|0|0|0.66|1|1|3|0|188
chr4_1 exon 67336945 67337001 67336945 ID=Msa0566290-mRNA-1:exon:22099;Parent=Msa0566290-mRNA-1
chr4_1 exon 67337217 67337572 67337217 ID=Msa0566290-mRNA-1:exon:22100;Parent=Msa0566290-mRNA-1
chr4_1 exon 67338594 67338747 67338594 ID=Msa0566290-mRNA-1:exon:22101;Parent=Msa0566290-mRNA-1
chr4_1 CDS 67336945 67337001 67336945 ID=Msa0566290-mRNA-1:cds;Parent=Msa0566290-mRNA-1
chr4_1 CDS 67337217 67337572 67337217 ID=Msa0566290-mRNA-1:cds;Parent=Msa0566290-mRNA-1
chr4_1 CDS 67338594 67338747 67338594 ID=Msa0566290-mRNA-1:cds;Parent=Msa0566290-mRNA-1
Gene Sequence

>Msa0566290

ATGGATCGGGAGGATGTCTGGCCCACTCCTGGTCAACAAGGATATCCTGGTAGACAGGACTCTTATGACATTGATGCTAAAACACCAGAAATTAAGGCCCAAAATGTGGGATTAGTCACAACCTTAACGGATAAAGATTTTCCTTTTATTAAGGATGTTGGGTTAAGTGTGATTAGAGTTAAACTTGAACCTAATGCTATTAAGGCACCTTCAAACCTAATTACCCCTGGGATTCAGCTAATTTACATTGCTAGAGGAAGTGGAAAAATAGAAATTGTGGGATTGAATGGAAAACGTGTCTTGGATGCTCAAGTTAAGGCTGGTCATTTGATTGTTGTGCCACAATTTTTTGTGGTTGCTAAAGTTGCTGGTGAAGAAGGAATGGAGAGTTACACTATTGTGACAACTACCAAACCTTTGTTTGAAGAGTTGGCCAGAGAGACATTAGAATGGGGAGCCTTGTCACCTACTGTGCAACAAGTGTCTTTTAACGTGGATTCTGAGTTTCAAAAACTTTTCATATCTAAGACTACAGAAACCACAAGTCTCATTCTCCCTACCATTTAG

Protein sequence

>Msa0566290

MDREDVWPTPGQQGYPGRQDSYDIDAKTPEIKAQNVGLVTTLTDKDFPFIKDVGLSVIRVKLEPNAIKAPSNLITPGIQLIYIARGSGKIEIVGLNGKRVLDAQVKAGHLIVVPQFFVVAKVAGEEGMESYTIVTTTKPLFEELARETLEWGALSPTVQQVSFNVDSEFQKLFISKTTETTSLILPTI*