AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0025570


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0025570 MtrunA17_Chr1g0180371 92.095 253 12 1 1 245 1 253 7.83e-165 456
Msa0025570 MtrunA17_Chr1g0180331 60.905 243 82 5 13 245 14 253 7.25e-101 295
Msa0025570 MtrunA17_Chr7g0264911 60.753 186 64 2 67 243 1 186 2.74e-77 233
Msa0025570 MtrunA17_Chr4g0028711 51.101 227 98 3 28 245 25 247 3.38e-77 234
Msa0025570 MtrunA17_Chr4g0028741 46.473 241 113 5 16 245 13 248 3.49e-77 234
Msa0025570 MtrunA17_Chr4g0028721 51.351 222 95 3 33 245 4 221 1.40e-75 229
Msa0025570 MtrunA17_Chr7g0257091 48.163 245 108 6 11 244 5 241 2.45e-75 229
Msa0025570 MtrunA17_Chr4g0028731 51.634 153 69 2 33 185 4 151 3.65e-52 167
Msa0025570 MtrunA17_Chr1g0178591 39.316 234 118 6 21 240 15 238 5.93e-51 167
Msa0025570 MtrunA17_Chr1g0178601 37.295 244 134 5 14 243 3 241 1.48e-48 160
Msa0025570 MtrunA17_Chr1g0178541 35.878 131 67 4 124 240 25 152 1.98e-17 77.4
Msa0025570 MtrunA17_Chr1g0178561 49.091 55 28 0 87 141 8 62 2.56e-11 57.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0025570 AT2G28210.1 52.066 242 102 5 14 245 14 251 2.64e-85 255
Msa0025570 AT1G08080.1 52.466 223 93 3 32 245 33 251 1.57e-82 248
Msa0025570 AT4G20990.1 47.325 243 110 5 14 245 8 243 1.93e-74 227
Msa0025570 AT1G08065.1 45.714 245 117 7 14 247 11 250 2.70e-68 212
Msa0025570 AT4G21000.1 45.205 219 102 4 10 228 19 219 1.47e-66 207
Msa0025570 AT5G04180.1 41.176 238 124 5 15 242 4 235 2.98e-56 181
Msa0025570 AT5G56330.2 46.667 180 87 5 32 207 133 307 1.55e-47 160
Msa0025570 AT5G56330.1 42.857 217 86 5 32 245 133 314 2.82e-47 160
Msa0025570 AT2G28210.2 52.482 141 62 2 14 149 14 154 8.00e-47 153
Msa0025570 AT3G52720.3 34.156 243 138 6 15 243 9 243 3.78e-39 137
Msa0025570 AT3G52720.4 34.156 243 138 6 15 243 9 243 3.78e-39 137
Msa0025570 AT3G52720.1 34.156 243 138 6 15 243 9 243 3.78e-39 137
Msa0025570 AT3G52720.2 33.333 228 138 5 15 236 9 228 1.42e-36 129

Find 65 sgRNAs with CRISPR-Local

Find 322 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTGGTCTAATGTATAAAAT+TGG 0.268694 1_1:-48889280 Msa0025570:CDS
TACACAAAAGGTAGCAAAAT+AGG 0.312146 1_1:-48894216 Msa0025570:CDS
GTTGCTAGTATTAATAGATT+TGG 0.315573 1_1:+48894425 None:intergenic
TTGGCACCACCCTCACTCTA+TGG 0.322735 1_1:+48894112 None:intergenic
TTGGTGCTTCATGTTTGATT+TGG 0.346186 1_1:+48894469 None:intergenic
CTATGGTTTGACATATCAAT+TGG 0.372835 1_1:+48894129 None:intergenic
TCCTTGTTGTGCAAAGGATT+AGG 0.373045 1_1:+48894399 None:intergenic
AAGAGTAAGATAGCTGTTAT+TGG 0.374604 1_1:-48889298 Msa0025570:CDS
CAAAATAGGCCCCTCACATT+GGG 0.379419 1_1:-48894202 Msa0025570:CDS
AATAAATGATGCAGGTGAAA+TGG 0.381383 1_1:-48890604 Msa0025570:intron
GACAAACCTCCTGCCATTGA+TGG 0.396424 1_1:+48890499 None:intergenic
CTTCATGTTTGATTTGGACT+AGG 0.402638 1_1:+48894475 None:intergenic
GTGAGGGTGGTGCCAAAGTT+AGG 0.408994 1_1:-48894105 Msa0025570:CDS
ATGAAGTTGAAAGGAGCATT+GGG 0.412118 1_1:-48889101 Msa0025570:CDS
CAGTGCAAGGAGGGACAGTA+AGG 0.415316 1_1:+48889019 None:intergenic
CATGAAAGTGCAAAAGTAAA+CGG 0.418487 1_1:-48889322 Msa0025570:CDS
CATGAATTTGATTACACAAA+AGG 0.418746 1_1:-48894228 Msa0025570:CDS
CCACCCAACTTGATTTCTGA+AGG 0.465681 1_1:+48889069 None:intergenic
GATCCTTCAGAAATCAAGTT+GGG 0.471464 1_1:-48889072 Msa0025570:CDS
ACTGTCCCTCCTTGCACTGA+AGG 0.477863 1_1:-48889015 Msa0025570:CDS
CCTTCTGAACACACCATCAA+TGG 0.486540 1_1:-48890512 Msa0025570:CDS
CAAGTAGAAGATGATGAAAG+AGG 0.487662 1_1:+48894516 None:intergenic
GCAAAATAGGCCCCTCACAT+TGG 0.489393 1_1:-48894203 Msa0025570:CDS
ATGAAAGTGCAAAAGTAAAC+GGG 0.490283 1_1:-48889321 Msa0025570:CDS
GAATGGGCAACATGTAATGA+TGG 0.492565 1_1:-48894165 Msa0025570:CDS
AAGTGTTTCAAGAGGGCAGT+TGG 0.498514 1_1:-48888695 Msa0025570:CDS
AATGAAGTTGAAAGGAGCAT+TGG 0.505433 1_1:-48889102 Msa0025570:CDS
GGGGTAAAATCAAGAAGGAA+TGG 0.508013 1_1:-48894182 Msa0025570:CDS
GGGTAAAATCAAGAAGGAAT+GGG 0.525371 1_1:-48894181 Msa0025570:CDS
GCTGGATCAATAAATATCAA+TGG 0.525902 1_1:-48890572 Msa0025570:CDS
AAATAGAGGTCATGATATTG+AGG 0.527354 1_1:-48894040 Msa0025570:intron
CTATTGTCCTTGTTGTGCAA+AGG 0.529830 1_1:+48894393 None:intergenic
CCATTGATGGTGTGTTCAGA+AGG 0.543813 1_1:+48890512 None:intergenic
AAGAAGTACTACAGATACAT+AGG 0.545677 1_1:-48889045 Msa0025570:CDS
GTGAAATGGAAGGAAGATGC+TGG 0.545944 1_1:-48890590 Msa0025570:CDS
CATGTTTGATTTGGACTAGG+AGG 0.546355 1_1:+48894478 None:intergenic
ACCTTGCTGAGAACACGATC+TGG 0.547703 1_1:+48889253 None:intergenic
AAGTAGAAGATGATGAAAGA+GGG 0.548892 1_1:+48894517 None:intergenic
CTAGTATTAATAGATTTGGA+AGG 0.563282 1_1:+48894429 None:intergenic
AGGACAATAGCACAAGAAGT+TGG 0.564319 1_1:-48894380 Msa0025570:intron
TGATCCTTCAGAAATCAAGT+TGG 0.568562 1_1:-48889073 Msa0025570:CDS
CAAAGTTAGGAAAATTAAAG+AGG 0.570259 1_1:-48894092 Msa0025570:CDS
AATGGGCAACATGTAATGAT+GGG 0.583902 1_1:-48894164 Msa0025570:CDS
TCCTAATCCTTTGCACAACA+AGG 0.587202 1_1:-48894400 Msa0025570:CDS
CTGAACACACCATCAATGGC+AGG 0.589619 1_1:-48890508 Msa0025570:CDS
CAAATGACACCTTCAGTGCA+AGG 0.595109 1_1:+48889006 None:intergenic
AATGATGCAGGTGAAATGGA+AGG 0.596654 1_1:-48890600 Msa0025570:intron
CATGGACCATGTGTAGCTCA+AGG 0.603832 1_1:+48889341 None:intergenic
ACCAGATCGTGTTCTCAGCA+AGG 0.606154 1_1:-48889254 Msa0025570:intron
TTCAACTTCATTATCCACCA+TGG 0.609479 1_1:+48889113 None:intergenic
TGACACCTTCAGTGCAAGGA+GGG 0.610217 1_1:+48889010 None:intergenic
TGGTGGATAATGAAGTTGAA+AGG 0.612709 1_1:-48889110 Msa0025570:CDS
AGTGCAAGGAGGGACAGTAA+GGG 0.619780 1_1:+48889020 None:intergenic
CAGATAAGAAGTGTTTCAAG+AGG 0.624399 1_1:-48888703 Msa0025570:CDS
GTCAAACCATAGAGTGAGGG+TGG 0.624857 1_1:-48894118 Msa0025570:CDS
ATATGTCAAACCATAGAGTG+AGG 0.627999 1_1:-48894122 Msa0025570:CDS
ACATTGGGGTAAAATCAAGA+AGG 0.636121 1_1:-48894187 Msa0025570:CDS
TGAAGTTGAAAGGAGCATTG+GGG 0.638978 1_1:-48889100 Msa0025570:CDS
AGATAAGAAGTGTTTCAAGA+GGG 0.642367 1_1:-48888702 Msa0025570:CDS
AAAATAGGCCCCTCACATTG+GGG 0.652089 1_1:-48894201 Msa0025570:CDS
CCTTCAGAAATCAAGTTGGG+TGG 0.652820 1_1:-48889069 Msa0025570:CDS
TATGTCAAACCATAGAGTGA+GGG 0.662085 1_1:-48894121 Msa0025570:CDS
AACACACCATCAATGGCAGG+AGG 0.695820 1_1:-48890505 Msa0025570:intron
ATGACACCTTCAGTGCAAGG+AGG 0.714310 1_1:+48889009 None:intergenic
GTATGACCTTGAGCTACACA+TGG 0.714569 1_1:-48889347 Msa0025570:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAAACAATTATTAAGAAT+GGG + chr1_1:48889480-48889499 None:intergenic 10.0%
!!! AATGATTTTAAATTTCAATT+TGG + chr1_1:48889520-48889539 None:intergenic 10.0%
!!! TTTTGATATATTTATAGATT+TGG + chr1_1:48890479-48890498 None:intergenic 10.0%
!! TTAATATTAAATAATACCAA+TGG + chr1_1:48890581-48890600 None:intergenic 10.0%
!!! ATTATTTAACATCAAATTTT+TGG - chr1_1:48890717-48890736 Msa0025570:intron 10.0%
!! TCAATATATATTTATGTATT+TGG - chr1_1:48891561-48891580 Msa0025570:intron 10.0%
!!! TCTTATTTATAAGAAATTTT+TGG + chr1_1:48891624-48891643 None:intergenic 10.0%
!!! TTTTTGTTTTGAAAAATAAA+TGG - chr1_1:48893599-48893618 Msa0025570:intron 10.0%
!!! AAATTTTAAATATTGCAAAT+GGG - chr1_1:48893643-48893662 Msa0025570:intron 10.0%
!!! AAAATAATTTTTAAATTCCT+AGG + chr1_1:48893690-48893709 None:intergenic 10.0%
!!! TTATATTGTTTTAATTTCTT+TGG + chr1_1:48893876-48893895 None:intergenic 10.0%
!!! AGTAATTTTTCTTTTTTTAA+AGG - chr1_1:48894432-48894451 Msa0025570:CDS 10.0%
!!! GTAATTTTTCTTTTTTTAAA+GGG - chr1_1:48894433-48894452 Msa0025570:CDS 10.0%
!! TCTATTGTTTAAATATTGTA+TGG - chr1_1:48889203-48889222 Msa0025570:intron 15.0%
!!! AAATTATGATTTAGAATTAG+GGG + chr1_1:48889369-48889388 None:intergenic 15.0%
!!! GAAATTATGATTTAGAATTA+GGG + chr1_1:48889370-48889389 None:intergenic 15.0%
!!! TGAAATTATGATTTAGAATT+AGG + chr1_1:48889371-48889390 None:intergenic 15.0%
!! AGAAATAAGCAAAATAATTT+GGG + chr1_1:48889394-48889413 None:intergenic 15.0%
!! AAGAAATAAGCAAAATAATT+TGG + chr1_1:48889395-48889414 None:intergenic 15.0%
!!! TTATTTTGCTTATTTCTTTA+CGG - chr1_1:48889397-48889416 Msa0025570:intron 15.0%
!! TAAAACAATTATTAAGAATG+GGG + chr1_1:48889479-48889498 None:intergenic 15.0%
!! GTTAAAACAATTATTAAGAA+TGG + chr1_1:48889481-48889500 None:intergenic 15.0%
!! TAAACAAAATGATTTATGTT+TGG - chr1_1:48890090-48890109 Msa0025570:intron 15.0%
!! TCTATAAATATATCAAAACT+AGG - chr1_1:48890481-48890500 Msa0025570:intron 15.0%
!! TATATCTTAGTAGAATAATA+TGG + chr1_1:48891022-48891041 None:intergenic 15.0%
!!! GATATATTTTTATAAAGTGA+TGG - chr1_1:48891380-48891399 Msa0025570:intron 15.0%
!!! TTATTTCTTCTTTTTAAACT+TGG + chr1_1:48891777-48891796 None:intergenic 15.0%
!! TCTATAAATCATAGTTAAAA+TGG + chr1_1:48891908-48891927 None:intergenic 15.0%
!! ATAGAATTAGAAATGAATAT+TGG - chr1_1:48892240-48892259 Msa0025570:intron 15.0%
!!! AAATTTTCACATTAAAAATC+AGG + chr1_1:48892629-48892648 None:intergenic 15.0%
!!! TATTTGTTAAAAAAAGTGTT+TGG - chr1_1:48892860-48892879 Msa0025570:intron 15.0%
!!! TTGCTATTGAAAAATTATAA+GGG + chr1_1:48893136-48893155 None:intergenic 15.0%
!!! TTTGCTATTGAAAAATTATA+AGG + chr1_1:48893137-48893156 None:intergenic 15.0%
!! TATACATTAGTTAAAAAGTA+TGG + chr1_1:48893253-48893272 None:intergenic 15.0%
!!! CAAATTTTAAATATTGCAAA+TGG - chr1_1:48893642-48893661 Msa0025570:intron 15.0%
!! GGTATTAAAATAATATATGT+TGG + chr1_1:48893669-48893688 None:intergenic 15.0%
!!! CATATATTATTTTAATACCT+AGG - chr1_1:48893670-48893689 Msa0025570:intron 15.0%
!!! TTTTCTTGATCTTAAATATT+AGG - chr1_1:48893706-48893725 Msa0025570:intron 15.0%
!!! AAATTTAATTTTAGTCATGA+TGG - chr1_1:48894175-48894194 Msa0025570:CDS 15.0%
!! CTTAATGAATGAGAAAAATA+AGG + chr1_1:48888531-48888550 None:intergenic 20.0%
!!! GGAATTTTTTGAGTATTTTT+TGG + chr1_1:48888628-48888647 None:intergenic 20.0%
!! TTGAAATACTCAAAGATTAA+TGG + chr1_1:48888754-48888773 None:intergenic 20.0%
!!! ATTTTTAATAGTAGCATTGT+GGG + chr1_1:48889019-48889038 None:intergenic 20.0%
!!! TATTTTTAATAGTAGCATTG+TGG + chr1_1:48889020-48889039 None:intergenic 20.0%
!! AATGCTACTATTAAAAATAG+AGG - chr1_1:48889021-48889040 Msa0025570:CDS 20.0%
!!! CTTTTGAAATAAATATCACT+TGG - chr1_1:48889673-48889692 Msa0025570:intron 20.0%
!!! ATTTGTTTGAGTTTAAATTC+AGG + chr1_1:48889833-48889852 None:intergenic 20.0%
!! TAAAGAATGAGAATTGATAA+AGG - chr1_1:48890180-48890199 Msa0025570:intron 20.0%
!! AAAGAATGAGAATTGATAAA+GGG - chr1_1:48890181-48890200 Msa0025570:intron 20.0%
!! AAATTATTAATATCCATCCA+TGG - chr1_1:48890526-48890545 Msa0025570:CDS 20.0%
!! ATTAAATAATACCAATGGAT+AGG + chr1_1:48890576-48890595 None:intergenic 20.0%
!! CATTTCTATAAGATATATCT+GGG + chr1_1:48890697-48890716 None:intergenic 20.0%
!! TCATTTCTATAAGATATATC+TGG + chr1_1:48890698-48890717 None:intergenic 20.0%
!! AATAATATATGAGATGATGT+TGG - chr1_1:48891051-48891070 Msa0025570:intron 20.0%
!!! TTTTTATAAATAAGACCGAA+TGG + chr1_1:48891532-48891551 None:intergenic 20.0%
!! AATTAGAAATGAATATTGGT+AGG - chr1_1:48892244-48892263 Msa0025570:intron 20.0%
!! AAAATCTATGCATAATATCA+TGG - chr1_1:48892932-48892951 Msa0025570:intron 20.0%
!! AAATCTATGCATAATATCAT+GGG - chr1_1:48892933-48892952 Msa0025570:intron 20.0%
!! TGCTATTGAAAAATTATAAG+GGG + chr1_1:48893135-48893154 None:intergenic 20.0%
!!! ATTAGACATGTATTTTGAAA+CGG + chr1_1:48893194-48893213 None:intergenic 20.0%
!!! TATTTTTTTCAACTACAATG+AGG - chr1_1:48893443-48893462 Msa0025570:intron 20.0%
!!! ATAATTTTCACTGACATTTA+GGG + chr1_1:48893550-48893569 None:intergenic 20.0%
!!! AATAATTTTCACTGACATTT+AGG + chr1_1:48893551-48893570 None:intergenic 20.0%
!!! ATTGGTCTAATGTATAAAAT+TGG - chr1_1:48893795-48893814 Msa0025570:intron 20.0%
!!! AGGTAACAATATTTTTTGTT+TGG - chr1_1:48893841-48893860 Msa0025570:intron 20.0%
!!! TTGTTTTAATTTCTTTGGTT+TGG + chr1_1:48893871-48893890 None:intergenic 20.0%
!! CATTTGGACTATTAATAAAA+AGG - chr1_1:48894086-48894105 Msa0025570:CDS 20.0%
!! TGATCTTCAATTAAGAAAAT+CGG - chr1_1:48894208-48894227 Msa0025570:CDS 20.0%
!! AAGAAAAATTACTTACATCA+TGG + chr1_1:48894425-48894444 None:intergenic 20.0%
!! AAGTTATTATACTTACATCA+TGG + chr1_1:48894460-48894479 None:intergenic 20.0%
!!! AGTCCATTTCTTTTTTATTT+TGG - chr1_1:48894538-48894557 Msa0025570:five_prime_UTR 20.0%
!! GATCCAAAATAAAAAAGAAA+TGG + chr1_1:48894544-48894563 None:intergenic 20.0%
! TGAATGAGAAAAATAAGGAA+GGG + chr1_1:48888526-48888545 None:intergenic 25.0%
! ATGAATGAGAAAAATAAGGA+AGG + chr1_1:48888527-48888546 None:intergenic 25.0%
! CTAGTATTAATAGATTTGGA+AGG + chr1_1:48888649-48888668 None:intergenic 25.0%
! GTTGCTAGTATTAATAGATT+TGG + chr1_1:48888653-48888672 None:intergenic 25.0%
! CATGAATTTGATTACACAAA+AGG - chr1_1:48888847-48888866 Msa0025570:intron 25.0%
!!! CTCTTTAATTTTCCTAACTT+TGG + chr1_1:48888985-48889004 None:intergenic 25.0%
! CAAAGTTAGGAAAATTAAAG+AGG - chr1_1:48888983-48889002 Msa0025570:intron 25.0%
!! TTTTTAATAGTAGCATTGTG+GGG + chr1_1:48889018-48889037 None:intergenic 25.0%
!! GATGAAATGAATGATTTTCT+GGG + chr1_1:48889072-48889091 None:intergenic 25.0%
!! TGATGAAATGAATGATTTTC+TGG + chr1_1:48889073-48889092 None:intergenic 25.0%
! TGAAAATAAGCAATATCACT+TGG - chr1_1:48889642-48889661 Msa0025570:intron 25.0%
! ATCATCGAAATTCATGATAT+TGG - chr1_1:48889719-48889738 Msa0025570:intron 25.0%
!! TGAGAGAATTGATTTATGTT+TGG - chr1_1:48890046-48890065 Msa0025570:intron 25.0%
! ACTAAAATAGACATAGCTAA+AGG - chr1_1:48890149-48890168 Msa0025570:intron 25.0%
! TCAAATATTTACCTATACCA+TGG + chr1_1:48890546-48890565 None:intergenic 25.0%
! CAAACCAGAGATTAAATATA+CGG + chr1_1:48890670-48890689 None:intergenic 25.0%
! ATTAGAATAGATAGTTGACT+TGG - chr1_1:48891187-48891206 Msa0025570:intron 25.0%
! CAAAAAAAAAAGTTAGAGAG+TGG - chr1_1:48891213-48891232 Msa0025570:intron 25.0%
!!! TCAATAAAAGTTGATGTACT+TGG + chr1_1:48891600-48891619 None:intergenic 25.0%
! AAGTAATCTACTACTTCATA+TGG + chr1_1:48891647-48891666 None:intergenic 25.0%
! ATCGTTAACTAATAAGAGTA+CGG - chr1_1:48891684-48891703 Msa0025570:intron 25.0%
! TATTATGTATCTACTTGCAT+AGG - chr1_1:48891958-48891977 Msa0025570:intron 25.0%
! ATTATGTATCTACTTGCATA+GGG - chr1_1:48891959-48891978 Msa0025570:intron 25.0%
!!! GTGTTTTTATTAGAATGTGT+TGG + chr1_1:48892089-48892108 None:intergenic 25.0%
! TCTAATAAAAACACATGAAG+AGG - chr1_1:48892095-48892114 Msa0025570:intron 25.0%
! CTAATAAAAACACATGAAGA+GGG - chr1_1:48892096-48892115 Msa0025570:intron 25.0%
! TAATAAAAACACATGAAGAG+GGG - chr1_1:48892097-48892116 Msa0025570:intron 25.0%
! CTCTTTATAATAAATGATGC+AGG - chr1_1:48892463-48892482 Msa0025570:intron 25.0%
! GGTGAAAAGATATGAATATT+TGG + chr1_1:48892608-48892627 None:intergenic 25.0%
!!! TTTTCCTTGTACACTTTTTT+TGG - chr1_1:48892685-48892704 Msa0025570:intron 25.0%
!! TGGAAATAATTTGTGTTTCT+CGG + chr1_1:48892802-48892821 None:intergenic 25.0%
!! AGGAATCATATTTTCATTCT+CGG + chr1_1:48892837-48892856 None:intergenic 25.0%
!!! ACTTTTTTTAACAAATAGCC+AGG + chr1_1:48892857-48892876 None:intergenic 25.0%
!! TTGTAACTTCTAATTTTCCT+AGG + chr1_1:48892902-48892921 None:intergenic 25.0%
!!! TTATACCTATGTTTGTTATG+AGG + chr1_1:48893054-48893073 None:intergenic 25.0%
! GCTATTGAAAAATTATAAGG+GGG + chr1_1:48893134-48893153 None:intergenic 25.0%
! GCAAATTACAAAAAAGTAGA+CGG - chr1_1:48893152-48893171 Msa0025570:intron 25.0%
! TCCTAAAATGAAAAGCTATT+AGG - chr1_1:48893401-48893420 Msa0025570:intron 25.0%
!! TCCTAATAGCTTTTCATTTT+AGG + chr1_1:48893405-48893424 None:intergenic 25.0%
! CTAAATAATCAAATCTGCAA+CGG - chr1_1:48893914-48893933 Msa0025570:intron 25.0%
! GTCAAAATACATAAAAACCA+TGG - chr1_1:48893945-48893964 Msa0025570:intron 25.0%
! AAAATACATAAAAACCATGG+TGG - chr1_1:48893948-48893967 Msa0025570:intron 25.0%
! GATCTTCAATTAAGAAAATC+GGG - chr1_1:48894209-48894228 Msa0025570:CDS 25.0%
! ATTCAGTGAATCAAAAAAAC+TGG + chr1_1:48894332-48894351 None:intergenic 25.0%
AAGTAGAAGATGATGAAAGA+GGG + chr1_1:48888561-48888580 None:intergenic 30.0%
ATCTATTTACATTTGTGCAG+AGG - chr1_1:48888819-48888838 Msa0025570:intron 30.0%
TACACAAAAGGTAGCAAAAT+AGG - chr1_1:48888859-48888878 Msa0025570:intron 30.0%
CTATGGTTTGACATATCAAT+TGG + chr1_1:48888949-48888968 None:intergenic 30.0%
AAATAGAGGTCATGATATTG+AGG - chr1_1:48889035-48889054 Msa0025570:CDS 30.0%
GAAAGAAAACCCGTATATTT+AGG - chr1_1:48889243-48889262 Msa0025570:intron 30.0%
TAAAACTCGCCTAAATATAC+GGG + chr1_1:48889255-48889274 None:intergenic 30.0%
CTAAAACTCGCCTAAATATA+CGG + chr1_1:48889256-48889275 None:intergenic 30.0%
! AGACAAAATTGGTCTAAGAT+GGG + chr1_1:48889301-48889320 None:intergenic 30.0%
! AAGACAAAATTGGTCTAAGA+TGG + chr1_1:48889302-48889321 None:intergenic 30.0%
GATAACAGGTAAGACAAAAT+TGG + chr1_1:48889312-48889331 None:intergenic 30.0%
! TTAGAATTAGGGGTATAAGT+TGG + chr1_1:48889359-48889378 None:intergenic 30.0%
! GAACGTGTTTTACTAATAAC+AGG + chr1_1:48889620-48889639 None:intergenic 30.0%
ATATTCAAAGCTGAACCAAA+CGG + chr1_1:48889972-48889991 None:intergenic 30.0%
!!! TTTTTGGCTAGAATTGCTTT+TGG - chr1_1:48890367-48890386 Msa0025570:intron 30.0%
!! CACTGTAGAGAATTGATTTT+GGG - chr1_1:48890390-48890409 Msa0025570:intron 30.0%
TTAATATCCATCCATGGTAT+AGG - chr1_1:48890532-48890551 Msa0025570:CDS 30.0%
ATATTTACCTATACCATGGA+TGG + chr1_1:48890542-48890561 None:intergenic 30.0%
TGTTAAATTGACCTAAGATG+AGG - chr1_1:48890613-48890632 Msa0025570:intron 30.0%
TTGACATATTTCCTCATCTT+AGG + chr1_1:48890627-48890646 None:intergenic 30.0%
!!! AATGTCATGGAAGTATTTTC+CGG + chr1_1:48890818-48890837 None:intergenic 30.0%
TGTTATGTGAATAGTGCATA+TGG + chr1_1:48890992-48891011 None:intergenic 30.0%
!!! TGACTAGATGAGTTTTGTTT+TGG - chr1_1:48891153-48891172 Msa0025570:intron 30.0%
! CTGTAAAAAAGTGTACCATT+CGG - chr1_1:48891514-48891533 Msa0025570:intron 30.0%
AATAAAAACACATGAAGAGG+GGG - chr1_1:48892098-48892117 Msa0025570:intron 30.0%
TTGGTAGGTAACTTAACATT+AGG - chr1_1:48892259-48892278 Msa0025570:intron 30.0%
ACTTAACATTAGGCTAATAC+TGG - chr1_1:48892269-48892288 Msa0025570:intron 30.0%
AAAGATATGGTGTACTTTGA+AGG + chr1_1:48892316-48892335 None:intergenic 30.0%
AGCATTCACAACAAAAGATA+TGG + chr1_1:48892329-48892348 None:intergenic 30.0%
AACAACCAGATTTACACAAT+GGG + chr1_1:48892374-48892393 None:intergenic 30.0%
AATAAATGATGCAGGTGAAA+TGG - chr1_1:48892471-48892490 Msa0025570:intron 30.0%
GCTGGATCAATAAATATCAA+TGG - chr1_1:48892503-48892522 Msa0025570:intron 30.0%
! TTTTTCTGCATCAATGTCAT+TGG - chr1_1:48892534-48892553 Msa0025570:intron 30.0%
GAGAAACACAAATTATTTCC+AGG - chr1_1:48892801-48892820 Msa0025570:intron 30.0%
GAGAATGAAAATATGATTCC+TGG - chr1_1:48892836-48892855 Msa0025570:intron 30.0%
GCAAATAAATTGACATTCCT+AGG - chr1_1:48892882-48892901 Msa0025570:intron 30.0%
CGTTACTTCTATTATTCCTA+TGG + chr1_1:48892994-48893013 None:intergenic 30.0%
TTCCTAGATATAAATATCCC+TGG + chr1_1:48893017-48893036 None:intergenic 30.0%
AAGTTTAAGAATGACATTCC+CGG + chr1_1:48893101-48893120 None:intergenic 30.0%
! CATGAAAGTGCAAAAGTAAA+CGG - chr1_1:48893753-48893772 Msa0025570:intron 30.0%
! ATGAAAGTGCAAAAGTAAAC+GGG - chr1_1:48893754-48893773 Msa0025570:intron 30.0%
AAGAGTAAGATAGCTGTTAT+TGG - chr1_1:48893777-48893796 Msa0025570:intron 30.0%
!! AAGAAGTACTACAGATACAT+AGG - chr1_1:48894030-48894049 Msa0025570:intron 30.0%
TCCCTCTGATCTTAAATAAT+AGG - chr1_1:48894135-48894154 Msa0025570:CDS 30.0%
! CCCTATTATTTAAGATCAGA+GGG + chr1_1:48894139-48894158 None:intergenic 30.0%
CCCTCTGATCTTAAATAATA+GGG - chr1_1:48894136-48894155 Msa0025570:CDS 30.0%
! ACCCTATTATTTAAGATCAG+AGG + chr1_1:48894140-48894159 None:intergenic 30.0%
!! AGATAAGAAGTGTTTCAAGA+GGG - chr1_1:48894373-48894392 Msa0025570:intron 30.0%
CAAGTAGAAGATGATGAAAG+AGG + chr1_1:48888562-48888581 None:intergenic 35.0%
!! CTTCATGTTTGATTTGGACT+AGG + chr1_1:48888603-48888622 None:intergenic 35.0%
! TTGGTGCTTCATGTTTGATT+TGG + chr1_1:48888609-48888628 None:intergenic 35.0%
! TTGATTTTACCCCAATGTGA+GGG + chr1_1:48888886-48888905 None:intergenic 35.0%
ACATTGGGGTAAAATCAAGA+AGG - chr1_1:48888888-48888907 Msa0025570:intron 35.0%
GGGTAAAATCAAGAAGGAAT+GGG - chr1_1:48888894-48888913 Msa0025570:intron 35.0%
AATGGGCAACATGTAATGAT+GGG - chr1_1:48888911-48888930 Msa0025570:intron 35.0%
ATATGTCAAACCATAGAGTG+AGG - chr1_1:48888953-48888972 Msa0025570:intron 35.0%
TATGTCAAACCATAGAGTGA+GGG - chr1_1:48888954-48888973 Msa0025570:intron 35.0%
!! TATTTAGGCGAGTTTTAGCA+TGG - chr1_1:48889258-48889277 Msa0025570:CDS 35.0%
! GACAAAATTGGTCTAAGATG+GGG + chr1_1:48889300-48889319 None:intergenic 35.0%
CAATTATTAAGAATGGGGCT+GGG + chr1_1:48889474-48889493 None:intergenic 35.0%
ACAATTATTAAGAATGGGGC+TGG + chr1_1:48889475-48889494 None:intergenic 35.0%
TATTCAAAGCTGAACCAAAC+GGG + chr1_1:48889971-48889990 None:intergenic 35.0%
AAACCTATACACGTTGTTCA+AGG - chr1_1:48890243-48890262 Msa0025570:intron 35.0%
! TTCTAGAAAAGCTAGAAGCT+AGG - chr1_1:48890274-48890293 Msa0025570:intron 35.0%
!! TGAACCAAACACGTTGTTTT+TGG - chr1_1:48890351-48890370 Msa0025570:intron 35.0%
!! GCACTGTAGAGAATTGATTT+TGG - chr1_1:48890389-48890408 Msa0025570:intron 35.0%
! TTTGGAACAAGTAGAAAGCT+GGG + chr1_1:48890461-48890480 None:intergenic 35.0%
! ATTTGGAACAAGTAGAAAGC+TGG + chr1_1:48890462-48890481 None:intergenic 35.0%
AATACTTCCATGACATTGCT+TGG - chr1_1:48890821-48890840 Msa0025570:intron 35.0%
ATACTTCCATGACATTGCTT+GGG - chr1_1:48890822-48890841 Msa0025570:intron 35.0%
!! TTGTGTGTCATTGGTGTTAT+TGG + chr1_1:48890941-48890960 None:intergenic 35.0%
TATGTGAATAGTGCATATGG+TGG + chr1_1:48890989-48891008 None:intergenic 35.0%
TAAAAACGCACACAAACAAG+TGG - chr1_1:48891820-48891839 Msa0025570:intron 35.0%
TTAGCCAAACAACATAACTG+AGG + chr1_1:48891863-48891882 None:intergenic 35.0%
!! GGGAAGAAATATGTTGGTTT+AGG - chr1_1:48892118-48892137 Msa0025570:intron 35.0%
!! TGTTGGTTTAGGTTCAATCT+AGG - chr1_1:48892129-48892148 Msa0025570:intron 35.0%
!! CTTTTGTTGTGAATGCTCTT+AGG - chr1_1:48892332-48892351 Msa0025570:intron 35.0%
TCTTAGGTGAATTGTTACGT+AGG - chr1_1:48892348-48892367 Msa0025570:intron 35.0%
CAACAACCAGATTTACACAA+TGG + chr1_1:48892375-48892394 None:intergenic 35.0%
CAGATGAATATTACAGTAGC+TGG - chr1_1:48892411-48892430 Msa0025570:intron 35.0%
!!! TCCTTGTACACTTTTTTTGG+TGG - chr1_1:48892688-48892707 Msa0025570:intron 35.0%
! ACCACCAAAAAAAGTGTACA+AGG + chr1_1:48892692-48892711 None:intergenic 35.0%
!! TGGTGGTGTCTAATATCTTT+TGG - chr1_1:48892705-48892724 Msa0025570:intron 35.0%
! TGGTGTCTAATATCTTTTGG+TGG - chr1_1:48892708-48892727 Msa0025570:intron 35.0%
ATTCTCGGATAAGTTATTCC+TGG + chr1_1:48892822-48892841 None:intergenic 35.0%
ACATTCCCACTTTCTTACAT+GGG - chr1_1:48892961-48892980 Msa0025570:intron 35.0%
TTACTCCCATGTAAGAAAGT+GGG + chr1_1:48892969-48892988 None:intergenic 35.0%
TTTACTCCCATGTAAGAAAG+TGG + chr1_1:48892970-48892989 None:intergenic 35.0%
TTACATGGGAGTAAATCCAT+AGG - chr1_1:48892975-48892994 Msa0025570:intron 35.0%
GAATAATAGAAGTAACGCCA+GGG - chr1_1:48892997-48893016 Msa0025570:intron 35.0%
CTCAACCTCATAACAAACAT+AGG - chr1_1:48893046-48893065 Msa0025570:intron 35.0%
!!! GACATGTATTTTGAAACGGA+GGG + chr1_1:48893190-48893209 None:intergenic 35.0%
!!! AGACATGTATTTTGAAACGG+AGG + chr1_1:48893191-48893210 None:intergenic 35.0%
!! CGTTTACTTTTGCACTTTCA+TGG + chr1_1:48893755-48893774 None:intergenic 35.0%
TTCAACTTCATTATCCACCA+TGG + chr1_1:48893965-48893984 None:intergenic 35.0%
! TGGTGGATAATGAAGTTGAA+AGG - chr1_1:48893965-48893984 Msa0025570:intron 35.0%
! AATGAAGTTGAAAGGAGCAT+TGG - chr1_1:48893973-48893992 Msa0025570:intron 35.0%
!! ATGAAGTTGAAAGGAGCATT+GGG - chr1_1:48893974-48893993 Msa0025570:intron 35.0%
TGATCCTTCAGAAATCAAGT+TGG - chr1_1:48894002-48894021 Msa0025570:intron 35.0%
GATCCTTCAGAAATCAAGTT+GGG - chr1_1:48894003-48894022 Msa0025570:intron 35.0%
GTATATAACTAACGTGCAGA+CGG + chr1_1:48894254-48894273 None:intergenic 35.0%
!! CAGATAAGAAGTGTTTCAAG+AGG - chr1_1:48894372-48894391 Msa0025570:intron 35.0%
!! CATGTTTGATTTGGACTAGG+AGG + chr1_1:48888600-48888619 None:intergenic 40.0%
TCCTAATCCTTTGCACAACA+AGG - chr1_1:48888675-48888694 Msa0025570:CDS 40.0%
! TCCTTGTTGTGCAAAGGATT+AGG + chr1_1:48888679-48888698 None:intergenic 40.0%
! CTATTGTCCTTGTTGTGCAA+AGG + chr1_1:48888685-48888704 None:intergenic 40.0%
AGGACAATAGCACAAGAAGT+TGG - chr1_1:48888695-48888714 Msa0025570:CDS 40.0%
! TGATTTTACCCCAATGTGAG+GGG + chr1_1:48888885-48888904 None:intergenic 40.0%
! CTTGATTTTACCCCAATGTG+AGG + chr1_1:48888887-48888906 None:intergenic 40.0%
GGGGTAAAATCAAGAAGGAA+TGG - chr1_1:48888893-48888912 Msa0025570:intron 40.0%
GAATGGGCAACATGTAATGA+TGG - chr1_1:48888910-48888929 Msa0025570:intron 40.0%
!! CAGAGAGCAAAGTTGATAAC+AGG + chr1_1:48889326-48889345 None:intergenic 40.0%
TCTCCTTGAACAACGTGTAT+AGG + chr1_1:48890249-48890268 None:intergenic 40.0%
AGCTAGGATTTGTAGCTTCA+TGG - chr1_1:48890290-48890309 Msa0025570:intron 40.0%
! GCTTCATGGAGAATTGCTTT+TGG - chr1_1:48890304-48890323 Msa0025570:intron 40.0%
!! TCATGGAGAATTGCTTTTGG+AGG - chr1_1:48890307-48890326 Msa0025570:intron 40.0%
CTAGCCAAAAACAACGTGTT+TGG + chr1_1:48890358-48890377 None:intergenic 40.0%
CTAGAATTGCTTCTCAGAAG+TGG - chr1_1:48890413-48890432 Msa0025570:intron 40.0%
TTGAGAGCAATCCTATCCAT+TGG - chr1_1:48890562-48890581 Msa0025570:CDS 40.0%
GCTGCCGTATATTTAATCTC+TGG - chr1_1:48890663-48890682 Msa0025570:intron 40.0%
AAGTTGACAATGTTCCGTTC+CGG - chr1_1:48890796-48890815 Msa0025570:intron 40.0%
!!! CATGGAAGTATTTTCCGGAA+CGG + chr1_1:48890813-48890832 None:intergenic 40.0%
GTGTCATAGTTGTGTGTCAT+TGG + chr1_1:48890950-48890969 None:intergenic 40.0%
ACACAACTATGACACCAAAG+TGG - chr1_1:48890955-48890974 Msa0025570:intron 40.0%
! AATAGTGCATATGGTGGAAC+GGG + chr1_1:48890983-48891002 None:intergenic 40.0%
! GAATAGTGCATATGGTGGAA+CGG + chr1_1:48890984-48891003 None:intergenic 40.0%
TGCTAGCTGCCAACTATTAA+GGG + chr1_1:48891240-48891259 None:intergenic 40.0%
TTGCTAGCTGCCAACTATTA+AGG + chr1_1:48891241-48891260 None:intergenic 40.0%
CGTTACAAAAACCACCGATA+GGG + chr1_1:48891284-48891303 None:intergenic 40.0%
ACGTTACAAAAACCACCGAT+AGG + chr1_1:48891285-48891304 None:intergenic 40.0%
ACACAAACAAGTGGATGAGT+GGG - chr1_1:48891829-48891848 Msa0025570:intron 40.0%
TGAGCCTCAGTTATGTTGTT+TGG - chr1_1:48891856-48891875 Msa0025570:intron 40.0%
AAGAGGGGGAAGAAATATGT+TGG - chr1_1:48892112-48892131 Msa0025570:intron 40.0%
GTTGTTACAGTCTGGTAGTT+TGG + chr1_1:48892179-48892198 None:intergenic 40.0%
AATGATGCAGGTGAAATGGA+AGG - chr1_1:48892475-48892494 Msa0025570:intron 40.0%
CACATTCCCACTTTCTTACA+TGG - chr1_1:48892960-48892979 Msa0025570:intron 40.0%
GGAATAATAGAAGTAACGCC+AGG - chr1_1:48892996-48893015 Msa0025570:intron 40.0%
CGCCAGGGATATTTATATCT+AGG - chr1_1:48893012-48893031 Msa0025570:intron 40.0%
ATTCCCTAGCCATGTATTTC+CGG - chr1_1:48893079-48893098 Msa0025570:intron 40.0%
ATGACATTCCCGGAAATACA+TGG + chr1_1:48893091-48893110 None:intergenic 40.0%
!! TGAAGTTGAAAGGAGCATTG+GGG - chr1_1:48893975-48893994 Msa0025570:intron 40.0%
CAAAATAGGCCCCTCACATT+GGG - chr1_1:48888873-48888892 Msa0025570:intron 45.0%
AAAATAGGCCCCTCACATTG+GGG - chr1_1:48888874-48888893 Msa0025570:intron 45.0%
ACGAAAACTAAGTGCCCGTT+TGG - chr1_1:48889954-48889973 Msa0025570:intron 45.0%
TCTCAGAAGTGGAACCAAAC+AGG - chr1_1:48890424-48890443 Msa0025570:intron 45.0%
!!! GGGTTGTTTTAGAGCCTGTT+TGG + chr1_1:48890441-48890460 None:intergenic 45.0%
ATATACGGCAGCGTTTAGCA+TGG + chr1_1:48890655-48890674 None:intergenic 45.0%
CACCCATCAACACACATCAA+CGG + chr1_1:48890877-48890896 None:intergenic 45.0%
! TTGATGTGTGTTGATGGGTG+TGG - chr1_1:48890877-48890896 Msa0025570:intron 45.0%
! TGATGTGTGTTGATGGGTGT+GGG - chr1_1:48890878-48890897 Msa0025570:intron 45.0%
GTGTGTATGATGTGTGTGTG+TGG - chr1_1:48890904-48890923 Msa0025570:intron 45.0%
TGTATGATGTGTGTGTGTGG+TGG - chr1_1:48890907-48890926 Msa0025570:intron 45.0%
GAGAGTGGACCCTTAATAGT+TGG - chr1_1:48891228-48891247 Msa0025570:intron 45.0%
CTTTGTCCCTAACTCCCTAT+CGG - chr1_1:48891267-48891286 Msa0025570:intron 45.0%
AAACCACCGATAGGGAGTTA+GGG + chr1_1:48891276-48891295 None:intergenic 45.0%
AAAACCACCGATAGGGAGTT+AGG + chr1_1:48891277-48891296 None:intergenic 45.0%
! GGTGGTTTTTGTAACGTGTG+TGG - chr1_1:48891288-48891307 Msa0025570:intron 45.0%
CACACAAACAAGTGGATGAG+TGG - chr1_1:48891828-48891847 Msa0025570:intron 45.0%
ACTACCAGACTGTAACAACG+AGG - chr1_1:48892180-48892199 Msa0025570:intron 45.0%
TAGTCCTCGTTGTTACAGTC+TGG + chr1_1:48892187-48892206 None:intergenic 45.0%
GTAGGCCCATTGTGTAAATC+TGG - chr1_1:48892366-48892385 Msa0025570:intron 45.0%
GTGAAATGGAAGGAAGATGC+TGG - chr1_1:48892485-48892504 Msa0025570:intron 45.0%
!! CCATTGATGGTGTGTTCAGA+AGG + chr1_1:48892566-48892585 None:intergenic 45.0%
CCTTCTGAACACACCATCAA+TGG - chr1_1:48892563-48892582 Msa0025570:intron 45.0%
TTCCCTAGCCATGTATTTCC+GGG - chr1_1:48893080-48893099 Msa0025570:intron 45.0%
TTCCCGGAAATACATGGCTA+GGG + chr1_1:48893085-48893104 None:intergenic 45.0%
ATTCCCGGAAATACATGGCT+AGG + chr1_1:48893086-48893105 None:intergenic 45.0%
GTATGACCTTGAGCTACACA+TGG - chr1_1:48893728-48893747 Msa0025570:intron 45.0%
CCACCCAACTTGATTTCTGA+AGG + chr1_1:48894009-48894028 None:intergenic 45.0%
!! CCTTCAGAAATCAAGTTGGG+TGG - chr1_1:48894006-48894025 Msa0025570:intron 45.0%
CAAATGACACCTTCAGTGCA+AGG + chr1_1:48894072-48894091 None:intergenic 45.0%
!! CTTGCACTGAAGGTGTCATT+TGG - chr1_1:48894070-48894089 Msa0025570:CDS 45.0%
AAGTGTTTCAAGAGGGCAGT+TGG - chr1_1:48894380-48894399 Msa0025570:intron 45.0%
!! ATTATTTAATATTAAATCAA+TGG - chr1_1:48890586-48890605 Msa0025570:CDS 5.0%
!! ATAAAATATACAATAAAATA+CGG - chr1_1:48892002-48892021 Msa0025570:intron 5.0%
!!! AATTATTTTTATTTTTCTAT+TGG - chr1_1:48892035-48892054 Msa0025570:intron 5.0%
!!! AAAATATTTTATCAAATAAA+AGG - chr1_1:48893334-48893353 Msa0025570:intron 5.0%
GCAAAATAGGCCCCTCACAT+TGG - chr1_1:48888872-48888891 Msa0025570:intron 50.0%
GTCAAACCATAGAGTGAGGG+TGG - chr1_1:48888957-48888976 Msa0025570:intron 50.0%
ATGGCACCCAAGCAATGTCA+TGG + chr1_1:48890831-48890850 None:intergenic 50.0%
! TGACATTGCTTGGGTGCCAT+TGG - chr1_1:48890831-48890850 Msa0025570:intron 50.0%
GATTGCACCAATGGCACCAA+TGG + chr1_1:48890850-48890869 None:intergenic 50.0%
ATCAACACACATCAACGGCC+AGG + chr1_1:48890872-48890891 None:intergenic 50.0%
TGGCCGTTGATGTGTGTTGA+TGG - chr1_1:48890871-48890890 Msa0025570:intron 50.0%
! GGCCGTTGATGTGTGTTGAT+GGG - chr1_1:48890872-48890891 Msa0025570:intron 50.0%
! GATGTGTGTTGATGGGTGTG+GGG - chr1_1:48890879-48890898 Msa0025570:intron 50.0%
! ATGTGTGTGTGTGGTGGAGA+TGG - chr1_1:48890913-48890932 Msa0025570:intron 50.0%
CTGAACACACCATCAATGGC+AGG - chr1_1:48892567-48892586 Msa0025570:intron 50.0%
AACACACCATCAATGGCAGG+AGG - chr1_1:48892570-48892589 Msa0025570:intron 50.0%
GACAAACCTCCTGCCATTGA+TGG + chr1_1:48892579-48892598 None:intergenic 50.0%
CATGGACCATGTGTAGCTCA+AGG + chr1_1:48893737-48893756 None:intergenic 50.0%
ACCAGATCGTGTTCTCAGCA+AGG - chr1_1:48893821-48893840 Msa0025570:intron 50.0%
ACCTTGCTGAGAACACGATC+TGG + chr1_1:48893825-48893844 None:intergenic 50.0%
AGTGCAAGGAGGGACAGTAA+GGG + chr1_1:48894058-48894077 None:intergenic 50.0%
TGACACCTTCAGTGCAAGGA+GGG + chr1_1:48894068-48894087 None:intergenic 50.0%
ATGACACCTTCAGTGCAAGG+AGG + chr1_1:48894069-48894088 None:intergenic 50.0%
TTGGCACCACCCTCACTCTA+TGG + chr1_1:48888966-48888985 None:intergenic 55.0%
! GTGAGGGTGGTGCCAAAGTT+AGG - chr1_1:48888970-48888989 Msa0025570:intron 55.0%
!! TTGGGTGCCATTGGTGCCAT+TGG - chr1_1:48890840-48890859 Msa0025570:intron 55.0%
!! TGGTGCCATTGGTGCAATCC+TGG - chr1_1:48890851-48890870 Msa0025570:intron 55.0%
AACGGCCAGGATTGCACCAA+TGG + chr1_1:48890859-48890878 None:intergenic 55.0%
TGTCCCTAACTCCCTATCGG+TGG - chr1_1:48891270-48891289 Msa0025570:intron 55.0%
CAGTGCAAGGAGGGACAGTA+AGG + chr1_1:48894059-48894078 None:intergenic 55.0%
ACTGTCCCTCCTTGCACTGA+AGG - chr1_1:48894060-48894079 Msa0025570:CDS 55.0%
ACTAACGTGCAGACGGACAC+TGG + chr1_1:48894247-48894266 None:intergenic 55.0%
! TGGTGGAACGGGCTCCACTT+TGG + chr1_1:48890972-48890991 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 48888517 48894580 48888517 ID=Msa0025570;Name=Msa0025570
chr1_1 mRNA 48888517 48894580 48888517 ID=Msa0025570-mRNA-1;Parent=Msa0025570;Name=Msa0025570-mRNA-1;_AED=0.12;_eAED=0.12;_QI=100|0.66|0.71|0.85|0.66|0.71|7|0|247
chr1_1 exon 48888517 48888522 48888517 ID=Msa0025570-mRNA-1:exon:14072;Parent=Msa0025570-mRNA-1
chr1_1 exon 48888669 48888722 48888669 ID=Msa0025570-mRNA-1:exon:14071;Parent=Msa0025570-mRNA-1
chr1_1 exon 48889014 48889154 48889014 ID=Msa0025570-mRNA-1:exon:14070;Parent=Msa0025570-mRNA-1
chr1_1 exon 48889255 48889369 48889255 ID=Msa0025570-mRNA-1:exon:14069;Parent=Msa0025570-mRNA-1
chr1_1 exon 48890506 48890612 48890506 ID=Msa0025570-mRNA-1:exon:14068;Parent=Msa0025570-mRNA-1
chr1_1 exon 48894041 48894258 48894041 ID=Msa0025570-mRNA-1:exon:14067;Parent=Msa0025570-mRNA-1
chr1_1 exon 48894381 48894580 48894381 ID=Msa0025570-mRNA-1:exon:14066;Parent=Msa0025570-mRNA-1
chr1_1 five_prime_UTR 48894481 48894580 48894481 ID=Msa0025570-mRNA-1:five_prime_utr;Parent=Msa0025570-mRNA-1
chr1_1 CDS 48894381 48894480 48894381 ID=Msa0025570-mRNA-1:cds;Parent=Msa0025570-mRNA-1
chr1_1 CDS 48894041 48894258 48894041 ID=Msa0025570-mRNA-1:cds;Parent=Msa0025570-mRNA-1
chr1_1 CDS 48890506 48890612 48890506 ID=Msa0025570-mRNA-1:cds;Parent=Msa0025570-mRNA-1
chr1_1 CDS 48889255 48889369 48889255 ID=Msa0025570-mRNA-1:cds;Parent=Msa0025570-mRNA-1
chr1_1 CDS 48889014 48889154 48889014 ID=Msa0025570-mRNA-1:cds;Parent=Msa0025570-mRNA-1
chr1_1 CDS 48888669 48888722 48888669 ID=Msa0025570-mRNA-1:cds;Parent=Msa0025570-mRNA-1
chr1_1 CDS 48888517 48888522 48888517 ID=Msa0025570-mRNA-1:cds;Parent=Msa0025570-mRNA-1
Gene Sequence

>Msa0025570

ATGAAGCACCAAAAAATACTCAAAAAATTCCTTCCAAATCTATTAATACTAGCAACTATCCTAATCCTTTGCACAACAAGGACAATAGCACAAGAAGTTGAGGATGAGCATGAATTTGATTACACAAAAGGTAGCAAAATAGGCCCCTCACATTGGGGTAAAATCAAGAAGGAATGGGCAACATGTAATGATGGGAAAATGCAATCTCCAATTGATATGTCAAACCATAGAGTGAGGGTGGTGCCAAAGTTAGGAAAATTAAAGAGGCACTATAAGCCCCACAATGCTACTATTAAAAATAGAGGTCATGATATTGAGGTGAAATGGAAGGAAGATGCTGGATCAATAAATATCAATGGTACAGAGTTTTTTCTGCATCAATGTCATTGGCACGCACCTTCTGAACACACCATCAATGGCAGGAGGTATGACCTTGAGCTACACATGGTCCATGAAAGTGCAAAAGTAAACGGGAAGAGTAAGATAGCTGTTATTGGTCTAATGTATAAAATTGGTCGACCAGATCGTGTTCTCAGCAAGTTGTCAAAATACATAAAAACCATGGTGGATAATGAAGTTGAAAGGAGCATTGGGGTGTTTGATCCTTCAGAAATCAAGTTGGGTGGCAAGAAGTACTACAGATACATAGGCTCCCTTACTGTCCCTCCTTGCACTGAAGGTATAAGAAGTGTTTCAAGAGGGCAGTTGGAGTTACTAAGAGAAGCTGTCCATGATAGAAAT

Protein sequence

>Msa0025570

MKHQKILKKFLPNLLILATILILCTTRTIAQEVEDEHEFDYTKGSKIGPSHWGKIKKEWATCNDGKMQSPIDMSNHRVRVVPKLGKLKRHYKPHNATIKNRGHDIEVKWKEDAGSININGTEFFLHQCHWHAPSEHTINGRRYDLELHMVHESAKVNGKSKIAVIGLMYKIGRPDRVLSKLSKYIKTMVDNEVERSIGVFDPSEIKLGGKKYYRYIGSLTVPPCTEGIRSVSRGQLELLREAVHDRN