AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0790650


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0790650 MtrunA17_Chr8g0372991 99.467 375 1 1 1 375 1 374 0.0 767
Msa0790650 MtrunA17_Chr1g0188361 34.844 353 184 12 39 366 59 390 4.00e-52 178
Msa0790650 MtrunA17_Chr5g0423381 34.314 306 167 8 85 370 59 350 6.50e-49 168
Msa0790650 MtrunA17_Chr4g0018641 33.216 283 172 8 85 363 404 673 6.71e-39 147
Msa0790650 MtrunA17_Chr3g0090521 28.342 374 209 12 46 372 95 456 5.06e-31 123
Msa0790650 MtrunA17_Chr5g0419131 25.874 286 175 8 95 371 24 281 1.70e-18 85.1
Msa0790650 MtrunA17_Chr4g0043161 38.793 116 68 3 95 207 68 183 1.79e-15 76.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0790650 AT4G36530.2 68.956 364 109 2 2 364 3 363 0.0 533
Msa0790650 AT4G36530.1 75.329 304 75 0 61 364 3 306 1.24e-180 504
Msa0790650 AT5G19850.1 34.513 339 179 11 41 364 47 357 8.04e-54 182
Msa0790650 AT5G38520.1 33.516 364 210 14 25 367 8 360 2.11e-45 160
Msa0790650 AT5G38520.2 32.713 376 209 14 25 367 8 372 1.03e-44 158
Msa0790650 AT4G25290.1 34.333 300 176 9 73 367 388 671 1.26e-40 152
Msa0790650 AT5G13800.2 27.041 392 216 11 39 366 29 414 4.55e-35 134
Msa0790650 AT5G13800.1 27.041 392 216 11 39 366 29 414 4.55e-35 134
Msa0790650 AT5G13800.3 27.041 392 216 11 39 366 52 437 6.28e-35 134
Msa0790650 AT5G13800.4 26.842 380 208 11 39 354 29 402 4.66e-33 127
Msa0790650 AT1G13820.1 24.823 282 167 8 95 363 77 326 2.64e-15 76.6
Msa0790650 AT4G12830.1 27.407 270 157 12 99 353 132 377 1.46e-12 68.9

Find 114 sgRNAs with CRISPR-Local

Find 279 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAACCTTGTTTATGGTTTA+AGG 0.128329 5_3:+1523602 None:intergenic
TTCAGACCAAACCTTGTTTA+TGG 0.157165 5_3:+1523595 None:intergenic
TTGTGTTTCTTGGCCAATTC+TGG 0.173357 5_3:+1521526 None:intergenic
ACTTGTGAACTCGGCTTTAT+TGG 0.198322 5_3:-1519408 Msa0790650:CDS
CCTCCTCTTGTTCTTATTCA+TGG 0.200309 5_3:-1522606 Msa0790650:CDS
GCCTTAGACTTGCTTGGATT+TGG 0.217148 5_3:-1521496 Msa0790650:CDS
GGCATAAACCTTGTGTTTCT+TGG 0.217796 5_3:+1521516 None:intergenic
CTGAATTCTGCAGGACAATT+TGG 0.233804 5_3:-1520926 Msa0790650:CDS
AAGCAGAAGGGTACAATTAT+TGG 0.274374 5_3:-1522674 Msa0790650:CDS
CTTGTTCTTATTCATGGTTT+TGG 0.276536 5_3:-1522600 Msa0790650:CDS
CCTTAGACTTGCTTGGATTT+GGG 0.287622 5_3:-1521495 Msa0790650:CDS
TGGTTCTTGGATTTATATTC+TGG 0.289323 5_3:-1520817 Msa0790650:CDS
GGAGAGAGACTTTAGGAGTA+AGG 0.306647 5_3:+1519372 None:intergenic
ACAATTTGGTGATGGAAATA+AGG 0.310953 5_3:-1520912 Msa0790650:CDS
TGTTAAAGAACCAGCAGTTT+TGG 0.341015 5_3:-1521398 Msa0790650:CDS
CCCAAATCCAAGCAAGTCTA+AGG 0.342040 5_3:+1521495 None:intergenic
TATACAATGTTCAAACTGTT+TGG 0.342917 5_3:+1519351 None:intergenic
TTTAAAGGAATTATGGCAAC+TGG 0.352076 5_3:-1523310 Msa0790650:CDS
TGCAACAAGAAGGTTTGTTT+TGG 0.356493 5_3:+1523472 None:intergenic
ACTGCTTTGATTGCAGCAGC+TGG 0.361467 5_3:-1520980 Msa0790650:CDS
GTCTTGAGCTGGCCGTGTTA+TGG 0.361814 5_3:+1520090 None:intergenic
TAATAAACTTCTCCGGCATT+GGG 0.368100 5_3:+1520067 None:intergenic
CAGATACAATATTCCAGAAT+TGG 0.369584 5_3:-1521539 Msa0790650:CDS
ATGCCGGAGAAGTTTATTAC+AGG 0.380848 5_3:-1520063 Msa0790650:intron
TTGTACCCTTCTGCTTTGTA+TGG 0.388649 5_3:+1522681 None:intergenic
TTCTATTTGCTAATGTTTGA+AGG 0.388850 5_3:+1519089 None:intergenic
TTGCCCGTTGCTTCTGCTAT+GGG 0.392151 5_3:-1519546 Msa0790650:CDS
GTAATAAACTTCTCCGGCAT+TGG 0.392291 5_3:+1520066 None:intergenic
TACACTCTTGATTCTGTGTT+AGG 0.401014 5_3:-1519578 Msa0790650:CDS
TTCCCAAGTTTCCGTGTCAA+TGG 0.402365 5_3:-1523543 Msa0790650:exon
CTTGCCCGTTGCTTCTGCTA+TGG 0.404860 5_3:-1519547 Msa0790650:CDS
CTTAAACCATAAACAAGGTT+TGG 0.407061 5_3:-1523601 Msa0790650:five_prime_UTR
TGAACTCGGCTTTATTGGAT+TGG 0.414109 5_3:-1519403 Msa0790650:CDS
GGGTTGCCTGAGTCTGTCAC+GGG 0.422313 5_3:-1520959 Msa0790650:CDS
CGCTGGAAAACTTCCTTCAA+AGG 0.424959 5_3:+1520842 None:intergenic
GTTTATGCCTTAGACTTGCT+TGG 0.426438 5_3:-1521502 Msa0790650:CDS
AAGCCATTGACACGGAAACT+TGG 0.428335 5_3:+1523540 None:intergenic
ACTGTTTGGAGAGAGACTTT+AGG 0.439212 5_3:+1519365 None:intergenic
TTGGTGCATCTGCATTTCAC+TGG 0.442459 5_3:-1522581 Msa0790650:CDS
CTCTTGTTAACTTGCAAGCC+GGG 0.448412 5_3:-1519457 Msa0790650:CDS
AAAGCCGAGTTCACAAGTTC+CGG 0.451235 5_3:+1519413 None:intergenic
GGCAACTGGAGTTTCAGTTA+TGG 0.466052 5_3:-1523296 Msa0790650:CDS
TGGGTTGCCTGAGTCTGTCA+CGG 0.467611 5_3:-1520960 Msa0790650:CDS
TTGAGCTTGTGAAGTAAGAG+AGG 0.474929 5_3:+1523270 None:intergenic
CTGCTTTGATTGCAGCAGCT+GGG 0.475704 5_3:-1520979 Msa0790650:CDS
AGGAGTTGTAATCTAGGAGA+AGG 0.478275 5_3:+1523497 None:intergenic
CTGTCGACACACATAGACTA+TGG 0.479925 5_3:-1519196 Msa0790650:three_prime_UTR
GTCATCACCATACGATGTAT+AGG 0.482797 5_3:-1519261 Msa0790650:three_prime_UTR
GAGAGAGACTTTAGGAGTAA+GGG 0.485597 5_3:+1519373 None:intergenic
AAGGGTACAATTATTGGAAG+TGG 0.485898 5_3:-1522668 Msa0790650:CDS
CTATTTCCAACCAAAACTGC+TGG 0.488138 5_3:+1521388 None:intergenic
CTGAGACAAAAGGGAGTCAA+TGG 0.496372 5_3:-1523681 None:intergenic
CACTATGTTGTGCAAGGAGA+AGG 0.505318 5_3:-1522630 Msa0790650:CDS
TAGACTTGCTTGGATTTGGG+TGG 0.508081 5_3:-1521492 Msa0790650:CDS
TTGGTGAGGAGTTGTAATCT+AGG 0.510618 5_3:+1523491 None:intergenic
AAGTTCCGGTATCTCGTCGT+GGG 0.513634 5_3:+1519427 None:intergenic
TATGGGGTGACCTTGATCCA+TGG 0.514896 5_3:-1519529 Msa0790650:CDS
GTGCATCTGCATTTCACTGG+AGG 0.517866 5_3:-1522578 Msa0790650:intron
CACCCCATAGCAGAAGCAAC+GGG 0.519583 5_3:+1519543 None:intergenic
CGGCTTTCCTATACATCGTA+TGG 0.520316 5_3:+1519254 None:intergenic
TTGTAATCTAGGAGAAGGAG+AGG 0.521573 5_3:+1523502 None:intergenic
CTGGACCAACCCATGGATCA+AGG 0.525300 5_3:+1519519 None:intergenic
ACTCTTGTTAACTTGCAAGC+CGG 0.530091 5_3:-1519458 Msa0790650:CDS
CCAGCTCAAGACCCCAATGC+CGG 0.530143 5_3:-1520079 Msa0790650:CDS
GTTGTTCTACTGAATTCTGC+AGG 0.533043 5_3:-1520935 Msa0790650:CDS
ATGGGGTGACCTTGATCCAT+GGG 0.543368 5_3:-1519528 Msa0790650:CDS
GCACCTGTAATAAACTTCTC+CGG 0.546799 5_3:+1520060 None:intergenic
AGCCATTGACACGGAAACTT+GGG 0.546918 5_3:+1523541 None:intergenic
TCTGCAGGACAATTTGGTGA+TGG 0.548004 5_3:-1520920 Msa0790650:CDS
GCTTTCGCTGGACCAACCCA+TGG 0.557610 5_3:+1519512 None:intergenic
ACAAAAGGGAGTCAATGGCT+TGG 0.558006 5_3:-1523676 None:intergenic
GGTGACCTTGATCCATGGGT+TGG 0.562981 5_3:-1519524 Msa0790650:CDS
TTTGATTAGCTATACATACA+AGG 0.565746 5_3:+1519327 None:intergenic
TGTAATCTAGGAGAAGGAGA+GGG 0.565764 5_3:+1523503 None:intergenic
ATAATGTAAGAATTGAATGC+AGG 0.568687 5_3:+1519158 None:intergenic
AAAATTCACTATGTTGTGCA+AGG 0.574133 5_3:-1522636 Msa0790650:CDS
AGATTACCATACAAAGCAGA+AGG 0.574456 5_3:-1522687 Msa0790650:CDS
AAGACTGATTCAATCCGAGC+GGG 0.577428 5_3:+1520782 None:intergenic
TAACTAAACTAACCTTGAGA+TGG 0.582486 5_3:+1523247 None:intergenic
AAACCATGAATAAGAACAAG+AGG 0.582877 5_3:+1522603 None:intergenic
CAAGTTCCGGTATCTCGTCG+TGG 0.584909 5_3:+1519426 None:intergenic
GATACCGGAACTTGTGAACT+CGG 0.588286 5_3:-1519417 Msa0790650:CDS
AGAGACTTTAGGAGTAAGGG+TGG 0.593616 5_3:+1519376 None:intergenic
TCAAGTCGTGGACTTCATGA+AGG 0.598557 5_3:-1521425 Msa0790650:CDS
GTACAATTATTGGAAGTGGA+AGG 0.599023 5_3:-1522664 Msa0790650:CDS
TCACCCCATAGCAGAAGCAA+CGG 0.600873 5_3:+1519542 None:intergenic
AGAGACTTACTGTGATAGAG+AGG 0.602429 5_3:+1523440 None:intergenic
CACAAGATAGTCATCCACAT+TGG 0.603615 5_3:+1520117 None:intergenic
TCACAAGCTCAACCATCTCA+AGG 0.605473 5_3:-1523259 Msa0790650:intron
AGTTCCGGTATCTCGTCGTG+GGG 0.608774 5_3:+1519428 None:intergenic
CTATGATGCCATGGTGTGGA+GGG 0.613064 5_3:-1521449 Msa0790650:CDS
CCATGAATAAGAACAAGAGG+AGG 0.618576 5_3:+1522606 None:intergenic
GTAGTGAAGCTGCAACAAGA+AGG 0.624089 5_3:+1523462 None:intergenic
ACTATGATGCCATGGTGTGG+AGG 0.627349 5_3:-1521450 Msa0790650:CDS
TGCCCGTTGCTTCTGCTATG+GGG 0.629349 5_3:-1519545 Msa0790650:CDS
ACTCGTCGACTATGATGCCA+TGG 0.630961 5_3:-1521458 Msa0790650:CDS
TCGACTATGATGCCATGGTG+TGG 0.634074 5_3:-1521453 Msa0790650:CDS
TCAAAGCAGTAAATCCTCCA+AGG 0.637932 5_3:+1520993 None:intergenic
TAAATCCAAGAACCACACGC+TGG 0.640929 5_3:+1520825 None:intergenic
CAATGTGGATGACTATCTTG+TGG 0.643108 5_3:-1520116 Msa0790650:CDS
AGAATTGGCCAAGAAACACA+AGG 0.650829 5_3:-1521524 Msa0790650:CDS
TAAGGAACAGAAAACTTCAG+AGG 0.651193 5_3:-1520894 Msa0790650:CDS
AATAAACTTCTCCGGCATTG+GGG 0.651870 5_3:+1520068 None:intergenic
GACTTGATCCCTCCACACCA+TGG 0.665450 5_3:+1521441 None:intergenic
ACAACCTTAAACCATAAACA+AGG 0.666980 5_3:-1523606 Msa0790650:five_prime_UTR
CATGAATAAGAACAAGAGGA+GGG 0.669208 5_3:+1522607 None:intergenic
GGTGTGGAGGGATCAAGTCG+TGG 0.671418 5_3:-1521437 Msa0790650:CDS
GATTACCATACAAAGCAGAA+GGG 0.686937 5_3:-1522686 Msa0790650:CDS
ATCTTGTGGAATCCATAACA+CGG 0.689049 5_3:-1520102 Msa0790650:CDS
ATTGACACGGAAACTTGGGA+AGG 0.692044 5_3:+1523545 None:intergenic
TATACAAGAAGCCATTGACA+CGG 0.694183 5_3:+1523532 None:intergenic
TAAGACTGATTCAATCCGAG+CGG 0.726541 5_3:+1520781 None:intergenic
GTTGCCTGAGTCTGTCACGG+GGG 0.747822 5_3:-1520957 Msa0790650:CDS
GTGGTGAAGAGTGAGTGTTG+TGG 0.792274 5_3:+1523647 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTATATGCTTATATTTA+TGG - chr5_3:1520034-1520053 Msa0790650:intron 10.0%
!! ATAACAAAAAATTAACTTAT+CGG + chr5_3:1521177-1521196 None:intergenic 10.0%
!!! TTTTTAATAAGTTAAAACTA+TGG - chr5_3:1521729-1521748 Msa0790650:intron 10.0%
!!! TTTTTTTCATTGAAATCTTA+CGG - chr5_3:1520223-1520242 Msa0790650:intron 15.0%
!! ACAATTAAGAATCATATTTA+CGG - chr5_3:1522470-1522489 Msa0790650:intron 15.0%
!!! ATTTTGCTTTTGATATTTAT+TGG - chr5_3:1523015-1523034 Msa0790650:intron 15.0%
!!! ATTTTGTTTGTTTTGTTTGA+AGG - chr5_3:1519407-1519426 Msa0790650:CDS 20.0%
!!! TTTAGCTTTTAAAGGAATTA+TGG - chr5_3:1519457-1519476 Msa0790650:CDS 20.0%
!! ATAATAATACTTGTCAGAAA+TGG + chr5_3:1519595-1519614 None:intergenic 20.0%
!!! TTGTATTAGGTTTTTACATT+AGG - chr5_3:1519668-1519687 Msa0790650:intron 20.0%
!!! TTTCTTAATTTTTTCCCTTT+CGG + chr5_3:1520283-1520302 None:intergenic 20.0%
!! TATAAACAGCACATATAAAA+GGG + chr5_3:1520342-1520361 None:intergenic 20.0%
!! ATATAAACAGCACATATAAA+AGG + chr5_3:1520343-1520362 None:intergenic 20.0%
!!! AGTTTTTGAATGTTGTTATT+TGG + chr5_3:1520765-1520784 None:intergenic 20.0%
!! AAGTTATAATATTTATCAGC+TGG + chr5_3:1520923-1520942 None:intergenic 20.0%
!! TAATAATTCGATGTAAATCT+AGG + chr5_3:1521427-1521446 None:intergenic 20.0%
!! TAGATTTACATCGAATTATT+AGG - chr5_3:1521426-1521445 Msa0790650:CDS 20.0%
!! AGACTAAATTTCCAAAATTA+AGG + chr5_3:1521491-1521510 None:intergenic 20.0%
!! ACAATAATAACCAAGTAATA+TGG + chr5_3:1522289-1522308 None:intergenic 20.0%
!!! ATTTTAGATAAAAGGATAAG+AGG + chr5_3:1522433-1522452 None:intergenic 20.0%
!!! AGTTATGGATTTTAGATAAA+AGG + chr5_3:1522441-1522460 None:intergenic 20.0%
!! TAAATTGAATAGTGTTTGAT+TGG + chr5_3:1522573-1522592 None:intergenic 20.0%
!! CACTATTCAATTTACTTAAA+TGG - chr5_3:1522579-1522598 Msa0790650:CDS 20.0%
!! ATATTCATTTAATGATGTTG+TGG + chr5_3:1522863-1522882 None:intergenic 20.0%
!! TGTTATAGATTTATTTCCAA+TGG + chr5_3:1522892-1522911 None:intergenic 20.0%
!! TTGGAAATAAATCTATAACA+AGG - chr5_3:1522892-1522911 Msa0790650:intron 20.0%
!! AAATATATAGTTGACTAGTA+CGG + chr5_3:1522945-1522964 None:intergenic 20.0%
!! AAGAAAAACTAAGACTTTTG+AGG + chr5_3:1519209-1519228 None:intergenic 25.0%
!!! AGAAGAAGTTTAGCTTTTAA+AGG - chr5_3:1519449-1519468 Msa0790650:CDS 25.0%
!! TTAAGAGTTTTTGTATTGTC+TGG - chr5_3:1519899-1519918 Msa0790650:intron 25.0%
! TAAAAATCACAAATGAGTCA+GGG + chr5_3:1519935-1519954 None:intergenic 25.0%
! TTAAAAATCACAAATGAGTC+AGG + chr5_3:1519936-1519955 None:intergenic 25.0%
! TAAATGCATATATCGAAAGA+AGG + chr5_3:1520407-1520426 None:intergenic 25.0%
! ATAACATTTGATCAAGAAAG+TGG + chr5_3:1520701-1520720 None:intergenic 25.0%
! TCTTCAAATGTTTATTACAG+TGG - chr5_3:1521137-1521156 Msa0790650:intron 25.0%
! GATTTCTTTAAATGCTTGAT+AGG - chr5_3:1522048-1522067 Msa0790650:intron 25.0%
! TAATATGGAGATTAATCCTA+GGG + chr5_3:1522274-1522293 None:intergenic 25.0%
! AATTTCGACAACAATTTAGA+TGG + chr5_3:1522980-1522999 None:intergenic 25.0%
! TTATTGGAAAGAAACATACT+AGG - chr5_3:1523031-1523050 Msa0790650:intron 25.0%
! AGGTAGTAGTTAAAAACAAA+AGG + chr5_3:1523123-1523142 None:intergenic 25.0%
!!! AAGTTAACAAGAGTTGTTTT+TGG + chr5_3:1523310-1523329 None:intergenic 25.0%
! TATACAATGTTCAAACTGTT+TGG + chr5_3:1523426-1523445 None:intergenic 25.0%
!! TTTGATTAGCTATACATACA+AGG + chr5_3:1523450-1523469 None:intergenic 25.0%
!!! CTATCCTCAGTATTTTTAAT+CGG + chr5_3:1523543-1523562 None:intergenic 25.0%
! ATTAAAAATACTGAGGATAG+TGG - chr5_3:1523543-1523562 Msa0790650:exon 25.0%
! ATAATGTAAGAATTGAATGC+AGG + chr5_3:1523619-1523638 None:intergenic 25.0%
ACAACCTTAAACCATAAACA+AGG - chr5_3:1519168-1519187 Msa0790650:three_prime_UTR 30.0%
! CAAACCTTGTTTATGGTTTA+AGG + chr5_3:1519175-1519194 None:intergenic 30.0%
CTTAAACCATAAACAAGGTT+TGG - chr5_3:1519173-1519192 Msa0790650:three_prime_UTR 30.0%
TTTAAAGGAATTATGGCAAC+TGG - chr5_3:1519464-1519483 Msa0790650:CDS 30.0%
TAACTAAACTAACCTTGAGA+TGG + chr5_3:1519530-1519549 None:intergenic 30.0%
TTTCTTCAAGATTTGAATCG+CGG - chr5_3:1519625-1519644 Msa0790650:intron 30.0%
AATAAAAAAGTCTGCAACCA+CGG + chr5_3:1519992-1520011 None:intergenic 30.0%
!! GCTTTTTCCTTTTTAAGAGA+AGG - chr5_3:1520056-1520075 Msa0790650:intron 30.0%
TCAAGTTCCTTCTCTTAAAA+AGG + chr5_3:1520066-1520085 None:intergenic 30.0%
AAAATTCACTATGTTGTGCA+AGG - chr5_3:1520138-1520157 Msa0790650:intron 30.0%
AAACCATGAATAAGAACAAG+AGG + chr5_3:1520174-1520193 None:intergenic 30.0%
! CTTGTTCTTATTCATGGTTT+TGG - chr5_3:1520174-1520193 Msa0790650:intron 30.0%
! ATTGCTGTTCAATGTTACTT+AGG + chr5_3:1520494-1520513 None:intergenic 30.0%
CGATATGTTATATTTCATGC+AGG + chr5_3:1520725-1520744 None:intergenic 30.0%
! GCTTCAAGTTTACTAAATTG+TGG + chr5_3:1520874-1520893 None:intergenic 30.0%
ACATACTAAGATTTATGCGA+AGG + chr5_3:1520950-1520969 None:intergenic 30.0%
!! CTCTTTCTTCTAAGACAAAA+AGG - chr5_3:1521074-1521093 Msa0790650:intron 30.0%
!! CAATTCTGGAATATTGTATC+TGG + chr5_3:1521237-1521256 None:intergenic 30.0%
CAGATACAATATTCCAGAAT+TGG - chr5_3:1521235-1521254 Msa0790650:intron 30.0%
AAATTAAGGAAAACTGTGCA+TGG + chr5_3:1521477-1521496 None:intergenic 30.0%
! TGCACAGTTTTCCTTAATTT+TGG - chr5_3:1521477-1521496 Msa0790650:CDS 30.0%
!! ACAATTTGGTGATGGAAATA+AGG - chr5_3:1521862-1521881 Msa0790650:intron 30.0%
! GTTTTTCCTAAAACCTTTGA+AGG - chr5_3:1521919-1521938 Msa0790650:intron 30.0%
! AAACTTCCTTCAAAGGTTTT+AGG + chr5_3:1521928-1521947 None:intergenic 30.0%
TGGTTCTTGGATTTATATTC+TGG - chr5_3:1521957-1521976 Msa0790650:intron 30.0%
! GAATCAGTCTTAAAAAGTGT+AGG - chr5_3:1522004-1522023 Msa0790650:intron 30.0%
TGAATAAACTTTCACCGAAT+AGG - chr5_3:1522102-1522121 Msa0790650:intron 30.0%
ATAAAATCGTCCTAACATTC+TGG + chr5_3:1522151-1522170 None:intergenic 30.0%
AGTAGCTTAGTTTATCTCTT+GGG - chr5_3:1522214-1522233 Msa0790650:intron 30.0%
AATATGGAGATTAATCCTAG+GGG + chr5_3:1522273-1522292 None:intergenic 30.0%
GTAATATGGAGATTAATCCT+AGG + chr5_3:1522275-1522294 None:intergenic 30.0%
GGATTAATCTCCATATTACT+TGG - chr5_3:1522276-1522295 Msa0790650:intron 30.0%
TCTACGTGTCCTTATAAATA+GGG - chr5_3:1522349-1522368 Msa0790650:intron 30.0%
AATTGTCGAATTCGAAGTTA+TGG + chr5_3:1522456-1522475 None:intergenic 30.0%
!!! CTGCTTGTTTTTTCATTACT+AGG - chr5_3:1522542-1522561 Msa0790650:intron 30.0%
GTATAAAAACTCTTCCAATG+TGG - chr5_3:1522643-1522662 Msa0790650:CDS 30.0%
AAATGAATATACGTCTCCAT+TGG - chr5_3:1522873-1522892 Msa0790650:intron 30.0%
! TGTGTTCTAAACAATTCTGT+TGG - chr5_3:1523086-1523105 Msa0790650:intron 30.0%
AAAGCCGATTAAAAATACTG+AGG - chr5_3:1523536-1523555 Msa0790650:exon 30.0%
!! GGTTGTTTTGTGAATTTGTG+CGG + chr5_3:1519154-1519173 None:intergenic 35.0%
! TTCAGACCAAACCTTGTTTA+TGG + chr5_3:1519182-1519201 None:intergenic 35.0%
TATACAAGAAGCCATTGACA+CGG + chr5_3:1519245-1519264 None:intergenic 35.0%
!! TGCAACAAGAAGGTTTGTTT+TGG + chr5_3:1519305-1519324 None:intergenic 35.0%
AAATGGCATAAGTGAAAGTG+AGG + chr5_3:1519569-1519588 None:intergenic 35.0%
CTTGTCAGAAATGGCATAAA+TGG + chr5_3:1519586-1519605 None:intergenic 35.0%
TTAGGTCTAACTCATCCTTA+CGG - chr5_3:1519686-1519705 Msa0790650:intron 35.0%
TCTTACAAACTAGTTCCGTA+AGG + chr5_3:1519704-1519723 None:intergenic 35.0%
GACCTTATGTTCAATCTATG+CGG - chr5_3:1519756-1519775 Msa0790650:intron 35.0%
ACCTTATGTTCAATCTATGC+GGG - chr5_3:1519757-1519776 Msa0790650:intron 35.0%
!! TTGGTTTTTCCAATACGTTG+CGG - chr5_3:1519782-1519801 Msa0790650:intron 35.0%
TGTACCCAAAATTGTTCTTG+CGG - chr5_3:1519960-1519979 Msa0790650:intron 35.0%
AGATTACCATACAAAGCAGA+AGG - chr5_3:1520087-1520106 Msa0790650:CDS 35.0%
GATTACCATACAAAGCAGAA+GGG - chr5_3:1520088-1520107 Msa0790650:CDS 35.0%
! AAGCAGAAGGGTACAATTAT+TGG - chr5_3:1520100-1520119 Msa0790650:CDS 35.0%
! AAGGGTACAATTATTGGAAG+TGG - chr5_3:1520106-1520125 Msa0790650:CDS 35.0%
GTACAATTATTGGAAGTGGA+AGG - chr5_3:1520110-1520129 Msa0790650:CDS 35.0%
CATGAATAAGAACAAGAGGA+GGG + chr5_3:1520170-1520189 None:intergenic 35.0%
AGTTAATGCTCAATCCGAAA+GGG - chr5_3:1520266-1520285 Msa0790650:intron 35.0%
GAATTGAATACGCACAGAAT+TGG + chr5_3:1520380-1520399 None:intergenic 35.0%
TCTGATGTCTATACTCCTAA+AGG - chr5_3:1520612-1520631 Msa0790650:intron 35.0%
CTGATGTCTATACTCCTAAA+GGG - chr5_3:1520613-1520632 Msa0790650:intron 35.0%
!! ATTTGGCAATTGAGTTGACT+GGG + chr5_3:1520748-1520767 None:intergenic 35.0%
!! TATTTGGCAATTGAGTTGAC+TGG + chr5_3:1520749-1520768 None:intergenic 35.0%
!!! CTTCTCACTTTTTTCGTTGA+TGG - chr5_3:1520971-1520990 Msa0790650:CDS 35.0%
!!! ACTTTTTTCGTTGATGGCAA+AGG - chr5_3:1520977-1520996 Msa0790650:CDS 35.0%
!!! CTTTTTTCGTTGATGGCAAA+GGG - chr5_3:1520978-1520997 Msa0790650:CDS 35.0%
AGCACATTACATGCTATATC+AGG + chr5_3:1521009-1521028 None:intergenic 35.0%
! TGTTAAAGAACCAGCAGTTT+TGG - chr5_3:1521376-1521395 Msa0790650:intron 35.0%
TTTGGAAATTTAGTCTGTCG+TGG - chr5_3:1521495-1521514 Msa0790650:CDS 35.0%
GTTCAAATTTCGCTACACTA+CGG - chr5_3:1521565-1521584 Msa0790650:intron 35.0%
! AATGAAGCGTTAACAGATAG+CGG + chr5_3:1521601-1521620 None:intergenic 35.0%
TGCATATCGCAAAACAATAG+TGG - chr5_3:1521627-1521646 Msa0790650:intron 35.0%
TAAGGAACAGAAAACTTCAG+AGG - chr5_3:1521880-1521899 Msa0790650:intron 35.0%
GTTGCATGATATCTTCAACT+TGG - chr5_3:1522026-1522045 Msa0790650:intron 35.0%
ATTTGTGTCACCAGAATGTT+AGG - chr5_3:1522138-1522157 Msa0790650:intron 35.0%
GAGTAGCTTAGTTTATCTCT+TGG - chr5_3:1522213-1522232 Msa0790650:intron 35.0%
! GGACAATCTAAGATACTCTT+TGG + chr5_3:1522252-1522271 None:intergenic 35.0%
GTCTACGTGTCCTTATAAAT+AGG - chr5_3:1522348-1522367 Msa0790650:intron 35.0%
GTGTCCTTATAAATAGGGAT+TGG - chr5_3:1522354-1522373 Msa0790650:intron 35.0%
TCCTTATAAATAGGGATTGG+TGG - chr5_3:1522357-1522376 Msa0790650:intron 35.0%
ACCACCAATCCCTATTTATA+AGG + chr5_3:1522361-1522380 None:intergenic 35.0%
GGACTGTTTATTTCCTTTCA+GGG - chr5_3:1522511-1522530 Msa0790650:intron 35.0%
ATCTTGTGGAATCCATAACA+CGG - chr5_3:1522672-1522691 Msa0790650:CDS 35.0%
TAATAAACTTCTCCGGCATT+GGG + chr5_3:1522710-1522729 None:intergenic 35.0%
TAAGCAATGTAGATAAGCTG+AGG - chr5_3:1523056-1523075 Msa0790650:intron 35.0%
TACACTCTTGATTCTGTGTT+AGG - chr5_3:1523196-1523215 Msa0790650:intron 35.0%
!!! TTGATTTTGTTAGCTTTCGC+TGG + chr5_3:1523277-1523296 None:intergenic 35.0%
! TTTTGTGAATTTGTGCGGTG+TGG + chr5_3:1519149-1519168 None:intergenic 40.0%
TGTAATCTAGGAGAAGGAGA+GGG + chr5_3:1519274-1519293 None:intergenic 40.0%
TTGTAATCTAGGAGAAGGAG+AGG + chr5_3:1519275-1519294 None:intergenic 40.0%
AGGAGTTGTAATCTAGGAGA+AGG + chr5_3:1519280-1519299 None:intergenic 40.0%
TTGGTGAGGAGTTGTAATCT+AGG + chr5_3:1519286-1519305 None:intergenic 40.0%
!!! CAAGAAGGTTTGTTTTGGTG+AGG + chr5_3:1519300-1519319 None:intergenic 40.0%
AGAGACTTACTGTGATAGAG+AGG + chr5_3:1519337-1519356 None:intergenic 40.0%
TTGAGCTTGTGAAGTAAGAG+AGG + chr5_3:1519507-1519526 None:intergenic 40.0%
AATACAAAGCGCGATTGAGA+TGG + chr5_3:1519655-1519674 None:intergenic 40.0%
TCTCAATCGCGCTTTGTATT+AGG - chr5_3:1519655-1519674 Msa0790650:intron 40.0%
! CGGAACTAGTTTGTAAGATG+AGG - chr5_3:1519706-1519725 Msa0790650:intron 40.0%
TCCCGCATAGATTGAACATA+AGG + chr5_3:1519761-1519780 None:intergenic 40.0%
GTGTACATCCAAAGTGACTT+CGG + chr5_3:1519825-1519844 None:intergenic 40.0%
! GTTGTCCTGATGTGTGTTTT+CGG - chr5_3:1519871-1519890 Msa0790650:intron 40.0%
TTTGTCCGAAAACACACATC+AGG + chr5_3:1519879-1519898 None:intergenic 40.0%
TTGTACCCTTCTGCTTTGTA+TGG + chr5_3:1520096-1520115 None:intergenic 40.0%
CCATGAATAAGAACAAGAGG+AGG + chr5_3:1520171-1520190 None:intergenic 40.0%
CCTCCTCTTGTTCTTATTCA+TGG - chr5_3:1520168-1520187 Msa0790650:intron 40.0%
CAGTTAATGCTCAATCCGAA+AGG - chr5_3:1520265-1520284 Msa0790650:intron 40.0%
TTGTGTTTCTTGGCCAATTC+TGG + chr5_3:1521251-1521270 None:intergenic 40.0%
AGAATTGGCCAAGAAACACA+AGG - chr5_3:1521250-1521269 Msa0790650:intron 40.0%
GGCATAAACCTTGTGTTTCT+TGG + chr5_3:1521261-1521280 None:intergenic 40.0%
! GTTTATGCCTTAGACTTGCT+TGG - chr5_3:1521272-1521291 Msa0790650:intron 40.0%
! CCTTAGACTTGCTTGGATTT+GGG - chr5_3:1521279-1521298 Msa0790650:intron 40.0%
!! AAAGAACCAGCAGTTTTGGT+TGG - chr5_3:1521380-1521399 Msa0790650:intron 40.0%
CTATTTCCAACCAAAACTGC+TGG + chr5_3:1521389-1521408 None:intergenic 40.0%
!!! CAGCAGTTTTGGTTGGAAAT+AGG - chr5_3:1521387-1521406 Msa0790650:intron 40.0%
! TCATGATGACTTTTCAGCCT+TGG - chr5_3:1521764-1521783 Msa0790650:intron 40.0%
TCAAAGCAGTAAATCCTCCA+AGG + chr5_3:1521784-1521803 None:intergenic 40.0%
GTTGTTCTACTGAATTCTGC+AGG - chr5_3:1521839-1521858 Msa0790650:intron 40.0%
CTGAATTCTGCAGGACAATT+TGG - chr5_3:1521848-1521867 Msa0790650:intron 40.0%
! TAAGACTGATTCAATCCGAG+CGG + chr5_3:1521996-1522015 None:intergenic 40.0%
TATGCCTTGATGAGCCTATT+CGG + chr5_3:1522119-1522138 None:intergenic 40.0%
AGTATCTTAGATTGTCCCCT+AGG - chr5_3:1522255-1522274 Msa0790650:intron 40.0%
GGGACTGTTTATTTCCTTTC+AGG - chr5_3:1522510-1522529 Msa0790650:intron 40.0%
CACAAGATAGTCATCCACAT+TGG + chr5_3:1522660-1522679 None:intergenic 40.0%
CAATGTGGATGACTATCTTG+TGG - chr5_3:1522658-1522677 Msa0790650:CDS 40.0%
AATAAACTTCTCCGGCATTG+GGG + chr5_3:1522709-1522728 None:intergenic 40.0%
GTAATAAACTTCTCCGGCAT+TGG + chr5_3:1522711-1522730 None:intergenic 40.0%
ATGCCGGAGAAGTTTATTAC+AGG - chr5_3:1522711-1522730 Msa0790650:intron 40.0%
GCACCTGTAATAAACTTCTC+CGG + chr5_3:1522717-1522736 None:intergenic 40.0%
AACATAGACAAAGACCGACT+AGG + chr5_3:1522754-1522773 None:intergenic 40.0%
TCGGTCTTTGTCTATGTTGT+CGG - chr5_3:1522756-1522775 Msa0790650:intron 40.0%
!! GTGAGTATGACGGACATAAT+TGG + chr5_3:1522837-1522856 None:intergenic 40.0%
ATTATGTCCGTCATACTCAC+AGG - chr5_3:1522837-1522856 Msa0790650:intron 40.0%
!! ACTCTTGTTAACTTGCAAGC+CGG - chr5_3:1523316-1523335 Msa0790650:CDS 40.0%
! ACTTGTGAACTCGGCTTTAT+TGG - chr5_3:1523366-1523385 Msa0790650:intron 40.0%
!! TGAACTCGGCTTTATTGGAT+TGG - chr5_3:1523371-1523390 Msa0790650:intron 40.0%
! GAGAGAGACTTTAGGAGTAA+GGG + chr5_3:1523404-1523423 None:intergenic 40.0%
ACTGTTTGGAGAGAGACTTT+AGG + chr5_3:1523412-1523431 None:intergenic 40.0%
GTCATCACCATACGATGTAT+AGG - chr5_3:1523513-1523532 Msa0790650:CDS 40.0%
ATTGACACGGAAACTTGGGA+AGG + chr5_3:1519232-1519251 None:intergenic 45.0%
TTCCCAAGTTTCCGTGTCAA+TGG - chr5_3:1519231-1519250 Msa0790650:three_prime_UTR 45.0%
AGCCATTGACACGGAAACTT+GGG + chr5_3:1519236-1519255 None:intergenic 45.0%
AAGCCATTGACACGGAAACT+TGG + chr5_3:1519237-1519256 None:intergenic 45.0%
GTAGTGAAGCTGCAACAAGA+AGG + chr5_3:1519315-1519334 None:intergenic 45.0%
GGCAACTGGAGTTTCAGTTA+TGG - chr5_3:1519478-1519497 Msa0790650:CDS 45.0%
TCACAAGCTCAACCATCTCA+AGG - chr5_3:1519515-1519534 Msa0790650:CDS 45.0%
TGTTCAATCTATGCGGGACT+TGG - chr5_3:1519763-1519782 Msa0790650:intron 45.0%
ATGTCTTGACCGCAACGTAT+TGG + chr5_3:1519794-1519813 None:intergenic 45.0%
CAAGACATCCGAAGTCACTT+TGG - chr5_3:1519814-1519833 Msa0790650:intron 45.0%
! TGGGCCGCAAGAACAATTTT+GGG + chr5_3:1519967-1519986 None:intergenic 45.0%
CACTATGTTGTGCAAGGAGA+AGG - chr5_3:1520144-1520163 Msa0790650:intron 45.0%
TTGGTGCATCTGCATTTCAC+TGG - chr5_3:1520193-1520212 Msa0790650:intron 45.0%
GAACAGCAATCAATCTGTGC+AGG - chr5_3:1520504-1520523 Msa0790650:intron 45.0%
ACTCCTAAAGGGAAGAGAAG+AGG - chr5_3:1520624-1520643 Msa0790650:intron 45.0%
GTTCCTCTTCTCTTCCCTTT+AGG + chr5_3:1520630-1520649 None:intergenic 45.0%
ACTTATCGGACTGACAATCG+AGG + chr5_3:1521163-1521182 None:intergenic 45.0%
! GCCTTAGACTTGCTTGGATT+TGG - chr5_3:1521278-1521297 Msa0790650:intron 45.0%
CCCAAATCCAAGCAAGTCTA+AGG + chr5_3:1521282-1521301 None:intergenic 45.0%
! TAGACTTGCTTGGATTTGGG+TGG - chr5_3:1521282-1521301 Msa0790650:intron 45.0%
TCAAGTCGTGGACTTCATGA+AGG - chr5_3:1521349-1521368 Msa0790650:intron 45.0%
GGAAATTTAGTCTGTCGTGG+TGG - chr5_3:1521498-1521517 Msa0790650:CDS 45.0%
! TGATGACTTTTCAGCCTTGG+AGG - chr5_3:1521767-1521786 Msa0790650:intron 45.0%
! TCTGCAGGACAATTTGGTGA+TGG - chr5_3:1521854-1521873 Msa0790650:intron 45.0%
CGCTGGAAAACTTCCTTCAA+AGG + chr5_3:1521935-1521954 None:intergenic 45.0%
TAAATCCAAGAACCACACGC+TGG + chr5_3:1521952-1521971 None:intergenic 45.0%
! AAGACTGATTCAATCCGAGC+GGG + chr5_3:1521995-1522014 None:intergenic 45.0%
TTCACCGAATAGGCTCATCA+AGG - chr5_3:1522112-1522131 Msa0790650:intron 45.0%
ACGGAAGCTTGTAGCATTAG+TGG - chr5_3:1522489-1522508 Msa0790650:intron 45.0%
CGGAAGCTTGTAGCATTAGT+GGG - chr5_3:1522490-1522509 Msa0790650:intron 45.0%
AGCAGAGTTAAGTCCCTGAA+AGG + chr5_3:1522527-1522546 None:intergenic 45.0%
! ATTGCGTAGCTTGTCAATGC+AGG - chr5_3:1522619-1522638 Msa0790650:CDS 45.0%
TAGACAAAGACCGACTAGGA+CGG + chr5_3:1522750-1522769 None:intergenic 45.0%
TCTGTCATGCCACACTATAC+AGG + chr5_3:1522786-1522805 None:intergenic 45.0%
CCTGCAGAGAACAATATGTC+AGG + chr5_3:1523143-1523162 None:intergenic 45.0%
CCTGACATATTGTTCTCTGC+AGG - chr5_3:1523140-1523159 Msa0790650:intron 45.0%
!! CTCTTGTTAACTTGCAAGCC+GGG - chr5_3:1523317-1523336 Msa0790650:CDS 45.0%
GATACCGGAACTTGTGAACT+CGG - chr5_3:1523357-1523376 Msa0790650:intron 45.0%
AAAGCCGAGTTCACAAGTTC+CGG + chr5_3:1523364-1523383 None:intergenic 45.0%
! AGAGACTTTAGGAGTAAGGG+TGG + chr5_3:1523401-1523420 None:intergenic 45.0%
! GGAGAGAGACTTTAGGAGTA+AGG + chr5_3:1523405-1523424 None:intergenic 45.0%
CGGCTTTCCTATACATCGTA+TGG + chr5_3:1523523-1523542 None:intergenic 45.0%
CTGTCGACACACATAGACTA+TGG - chr5_3:1523578-1523597 Msa0790650:five_prime_UTR 45.0%
!!! TTTTTTATTTATTAAAAACA+TGG - chr5_3:1520003-1520022 Msa0790650:intron 5.0%
!!! TTTTTATTTATTAAAAACAT+GGG - chr5_3:1520004-1520023 Msa0790650:intron 5.0%
!! TAACTTATTAAAAAAAAAAT+AGG + chr5_3:1521723-1521742 None:intergenic 5.0%
! GTGGTGAAGAGTGAGTGTTG+TGG + chr5_3:1519130-1519149 None:intergenic 50.0%
! CTGGGCCGCAAGAACAATTT+TGG + chr5_3:1519968-1519987 None:intergenic 50.0%
AAAGTCTGCAACCACGGTCT+GGG + chr5_3:1519986-1520005 None:intergenic 50.0%
AAAAGTCTGCAACCACGGTC+TGG + chr5_3:1519987-1520006 None:intergenic 50.0%
GTGCATCTGCATTTCACTGG+AGG - chr5_3:1520196-1520215 Msa0790650:intron 50.0%
! ACTCGTCGACTATGATGCCA+TGG - chr5_3:1521316-1521335 Msa0790650:intron 50.0%
TCGACTATGATGCCATGGTG+TGG - chr5_3:1521321-1521340 Msa0790650:intron 50.0%
ACTATGATGCCATGGTGTGG+AGG - chr5_3:1521324-1521343 Msa0790650:intron 50.0%
CTATGATGCCATGGTGTGGA+GGG - chr5_3:1521325-1521344 Msa0790650:intron 50.0%
TGTCGTGGTGGCAAACACAA+TGG - chr5_3:1521510-1521529 Msa0790650:CDS 50.0%
AACACAATGGTGTCCATCGC+TGG - chr5_3:1521523-1521542 Msa0790650:CDS 50.0%
CTATTTGTCGTGACCAGCGA+TGG + chr5_3:1521539-1521558 None:intergenic 50.0%
ACTGCTTTGATTGCAGCAGC+TGG - chr5_3:1521794-1521813 Msa0790650:intron 50.0%
CTGCTTTGATTGCAGCAGCT+GGG - chr5_3:1521795-1521814 Msa0790650:intron 50.0%
! GAAGGAAGTTTTCCAGCGTG+TGG - chr5_3:1521937-1521956 Msa0790650:intron 50.0%
! GTTTTCCAGCGTGTGGTTCT+TGG - chr5_3:1521944-1521963 Msa0790650:intron 50.0%
ATGACCGTTTCCGTCCTAGT+CGG - chr5_3:1522737-1522756 Msa0790650:intron 50.0%
AAGACCGACTAGGACGGAAA+CGG + chr5_3:1522744-1522763 None:intergenic 50.0%
GTCGGATTGCCTGTATAGTG+TGG - chr5_3:1522774-1522793 Msa0790650:intron 50.0%
GGAACTGTAGCTATGACAGC+AGG + chr5_3:1522816-1522835 None:intergenic 50.0%
GTTGTGGCCTGTGAGTATGA+CGG + chr5_3:1522847-1522866 None:intergenic 50.0%
TTGCCCGTTGCTTCTGCTAT+GGG - chr5_3:1523228-1523247 Msa0790650:intron 50.0%
TCACCCCATAGCAGAAGCAA+CGG + chr5_3:1523235-1523254 None:intergenic 50.0%
TATGGGGTGACCTTGATCCA+TGG - chr5_3:1523245-1523264 Msa0790650:intron 50.0%
ATGGGGTGACCTTGATCCAT+GGG - chr5_3:1523246-1523265 Msa0790650:intron 50.0%
AAGTTCCGGTATCTCGTCGT+GGG + chr5_3:1523350-1523369 None:intergenic 50.0%
GACTTGATCCCTCCACACCA+TGG + chr5_3:1521336-1521355 None:intergenic 55.0%
TGGGTTGCCTGAGTCTGTCA+CGG - chr5_3:1521814-1521833 Msa0790650:intron 55.0%
GTCTTGAGCTGGCCGTGTTA+TGG + chr5_3:1522687-1522706 None:intergenic 55.0%
CTTGCCCGTTGCTTCTGCTA+TGG - chr5_3:1523227-1523246 Msa0790650:intron 55.0%
TGCCCGTTGCTTCTGCTATG+GGG - chr5_3:1523229-1523248 Msa0790650:intron 55.0%
CACCCCATAGCAGAAGCAAC+GGG + chr5_3:1523234-1523253 None:intergenic 55.0%
GGTGACCTTGATCCATGGGT+TGG - chr5_3:1523250-1523269 Msa0790650:intron 55.0%
CTGGACCAACCCATGGATCA+AGG + chr5_3:1523258-1523277 None:intergenic 55.0%
AGTTCCGGTATCTCGTCGTG+GGG + chr5_3:1523349-1523368 None:intergenic 55.0%
CAAGTTCCGGTATCTCGTCG+TGG + chr5_3:1523351-1523370 None:intergenic 55.0%
GGTGTGGAGGGATCAAGTCG+TGG - chr5_3:1521337-1521356 Msa0790650:intron 60.0%
GGGTTGCCTGAGTCTGTCAC+GGG - chr5_3:1521815-1521834 Msa0790650:intron 60.0%
GGTTGCCTGAGTCTGTCACG+GGG - chr5_3:1521816-1521835 Msa0790650:intron 60.0%
GTTGCCTGAGTCTGTCACGG+GGG - chr5_3:1521817-1521836 Msa0790650:intron 60.0%
ACAACCCCCGTGACAGACTC+AGG + chr5_3:1521824-1521843 None:intergenic 60.0%
CCAGCTCAAGACCCCAATGC+CGG - chr5_3:1522695-1522714 Msa0790650:CDS 60.0%
GCTTTCGCTGGACCAACCCA+TGG + chr5_3:1523265-1523284 None:intergenic 60.0%
TTGCCCCCACGACGAGATAC+CGG - chr5_3:1523342-1523361 Msa0790650:CDS 60.0%
GTTCCGGTATCTCGTCGTGG+GGG + chr5_3:1523348-1523367 None:intergenic 60.0%
TGTTCTTGCGGCCCAGACCG+TGG - chr5_3:1519972-1519991 Msa0790650:intron 65.0%
GGCAGTCGAAGCAACCCGCT+CGG - chr5_3:1521978-1521997 Msa0790650:intron 65.0%
! CCGGCATTGGGGTCTTGAGC+TGG + chr5_3:1522698-1522717 None:intergenic 65.0%
CTCGTCGTGGGGGCAATGCC+CGG + chr5_3:1523338-1523357 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 1519104 1523692 1519104 ID=Msa0790650;Name=Msa0790650
chr5_3 mRNA 1519104 1523692 1519104 ID=Msa0790650-mRNA-1;Parent=Msa0790650;Name=Msa0790650-mRNA-1;_AED=0.02;_eAED=0.02;_QI=146|1|1|1|1|1|7|257|375
chr5_3 exon 1519104 1519634 1519104 ID=Msa0790650-mRNA-1:exon:567;Parent=Msa0790650-mRNA-1
chr5_3 exon 1520064 1520155 1520064 ID=Msa0790650-mRNA-1:exon:566;Parent=Msa0790650-mRNA-1
chr5_3 exon 1520775 1521015 1520775 ID=Msa0790650-mRNA-1:exon:565;Parent=Msa0790650-mRNA-1
chr5_3 exon 1521388 1521558 1521388 ID=Msa0790650-mRNA-1:exon:564;Parent=Msa0790650-mRNA-1
chr5_3 exon 1522579 1522723 1522579 ID=Msa0790650-mRNA-1:exon:563;Parent=Msa0790650-mRNA-1
chr5_3 exon 1523260 1523367 1523260 ID=Msa0790650-mRNA-1:exon:562;Parent=Msa0790650-mRNA-1
chr5_3 exon 1523450 1523692 1523450 ID=Msa0790650-mRNA-1:exon:561;Parent=Msa0790650-mRNA-1
chr5_3 five_prime_UTR 1523547 1523692 1523547 ID=Msa0790650-mRNA-1:five_prime_utr;Parent=Msa0790650-mRNA-1
chr5_3 CDS 1523450 1523546 1523450 ID=Msa0790650-mRNA-1:cds;Parent=Msa0790650-mRNA-1
chr5_3 CDS 1523260 1523367 1523260 ID=Msa0790650-mRNA-1:cds;Parent=Msa0790650-mRNA-1
chr5_3 CDS 1522579 1522723 1522579 ID=Msa0790650-mRNA-1:cds;Parent=Msa0790650-mRNA-1
chr5_3 CDS 1521388 1521558 1521388 ID=Msa0790650-mRNA-1:cds;Parent=Msa0790650-mRNA-1
chr5_3 CDS 1520775 1521015 1520775 ID=Msa0790650-mRNA-1:cds;Parent=Msa0790650-mRNA-1
chr5_3 CDS 1520064 1520155 1520064 ID=Msa0790650-mRNA-1:cds;Parent=Msa0790650-mRNA-1
chr5_3 CDS 1519361 1519634 1519361 ID=Msa0790650-mRNA-1:cds;Parent=Msa0790650-mRNA-1
chr5_3 three_prime_UTR 1519104 1519360 1519104 ID=Msa0790650-mRNA-1:three_prime_utr;Parent=Msa0790650-mRNA-1
Gene Sequence

>Msa0790650

ATGGCTTCTTGTATATCTACTCCCTCTCCTTCTCCTAGATTACAACTCCTCACCAAAACAAACCTTCTTGTTGCAGCTTCACTACCTCTCTATCACAGAAGTAAATGTGAATTGAACAGAAGAAGTTTAGCTTTTAAAGGAATTATGGCAACTGGAGTTTCAGTTATGGCTTCCTCTCTTACTTCACAAGCTCAACCATCTCAAGAGAAGGAACTTGAAAGATTACCATACAAAGCAGAAGGGTACAATTATTGGAAGTGGAAGGATCATAAAATTCACTATGTTGTGCAAGGAGAAGGCCCTCCTCTTGTTCTTATTCATGGTTTTGGTGCATCTGCATTTCACTGGAGATACAATATTCCAGAATTGGCCAAGAAACACAAGGTTTATGCCTTAGACTTGCTTGGATTTGGGTGGAGTGACAAAGCACTCGTCGACTATGATGCCATGGTGTGGAGGGATCAAGTCGTGGACTTCATGAAGGAAATTGTTAAAGAACCAGCAGTTTTGGTTGGAAATAGCCTTGGAGGATTTACTGCTTTGATTGCAGCAGCTGGGTTGCCTGAGTCTGTCACGGGGGTTGTTCTACTGAATTCTGCAGGACAATTTGGTGATGGAAATAAGGAACAGAAAACTTCAGAGGAAACATCTCTACAAAAGTTTTTCCTAAAACCTTTGAAGGAAGTTTTCCAGCGTGTGGTTCTTGGATTTATATTCTGGCAGTCGAAGCAACCCGCTCGGATTGAATCAGTCTTAAAAAGTGTGTATAAAAACTCTTCCAATGTGGATGACTATCTTGTGGAATCCATAACACGGCCAGCTCAAGACCCCAATGCCGGAGAAGTTTATTACAGGTTAATGACACGCTTCATGATGAATCAAAGCAAGTACACTCTTGATTCTGTGTTAGGCGAACTCTCTTGCCCGTTGCTTCTGCTATGGGGTGACCTTGATCCATGGGTTGGTCCAGCGAAAGCTAACAAAATCAAAGAGTTTTATCCAAAAACAACTCTTGTTAACTTGCAAGCCGGGCATTGCCCCCACGACGAGATACCGGAACTTGTGAACTCGGCTTTATTGGATTGGCTCGCCACCCTTACTCCTAAAGTCTCTCTCCAAACAGTTTGA

Protein sequence

>Msa0790650

MASCISTPSPSPRLQLLTKTNLLVAASLPLYHRSKCELNRRSLAFKGIMATGVSVMASSLTSQAQPSQEKELERLPYKAEGYNYWKWKDHKIHYVVQGEGPPLVLIHGFGASAFHWRYNIPELAKKHKVYALDLLGFGWSDKALVDYDAMVWRDQVVDFMKEIVKEPAVLVGNSLGGFTALIAAAGLPESVTGVVLLNSAGQFGDGNKEQKTSEETSLQKFFLKPLKEVFQRVVLGFIFWQSKQPARIESVLKSVYKNSSNVDDYLVESITRPAQDPNAGEVYYRLMTRFMMNQSKYTLDSVLGELSCPLLLLWGDLDPWVGPAKANKIKEFYPKTTLVNLQAGHCPHDEIPELVNSALLDWLATLTPKVSLQTV*