AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0506750


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0506750 MtrunA17_Chr3g0144221 94.953 634 14 2 1 633 1 617 0.0 1226
Msa0506750 MtrunA17_Chr1g0199651 52.183 481 210 3 4 483 8 469 1.16e-167 487
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0506750 AT1G76400.1 66.502 609 186 2 25 633 24 614 0.0 833
Msa0506750 AT1G76400.2 65.996 547 168 2 25 571 24 552 0.0 741
Msa0506750 AT2G01720.1 51.158 475 205 5 14 482 10 463 3.62e-161 470

Find 161 sgRNAs with CRISPR-Local

Find 493 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAGACTTCTGCATCTTATT+TGG 0.144569 3_4:+53408587 Msa0506750:CDS
CATCGTTGCGTGATCTTTCT+AGG 0.176304 3_4:+53408783 Msa0506750:CDS
CTGGAAATGGTTGCAATATA+TGG 0.199405 3_4:-53404415 None:intergenic
ACTGTCTAGAAGTATGTTTC+TGG 0.210627 3_4:-53409513 None:intergenic
CGCTTCCTTAATATCTCTTT+TGG 0.225268 3_4:+53405216 Msa0506750:CDS
GAGCCGTTAATGTTGATTTC+TGG 0.228415 3_4:+53408507 Msa0506750:CDS
CAAGTAAAACAAGGTCAAAA+TGG 0.248950 3_4:-53409272 None:intergenic
GTCAATCACCAAATCATTAA+TGG 0.250801 3_4:-53405244 None:intergenic
CCACTTCAGGACTTCTTGTT+TGG 0.252717 3_4:+53405180 Msa0506750:CDS
ACAAGAGATTTATGATCTTA+TGG 0.256694 3_4:+53409194 Msa0506750:CDS
TCGCCCTTCCCAAGGCCTTT+AGG 0.289486 3_4:-53404359 None:intergenic
TACTCTTGCGCCTGTATTGC+AGG 0.289724 3_4:+53408449 Msa0506750:CDS
AAGGAAGAGGGAATATCTTT+AGG 0.294373 3_4:-53404314 None:intergenic
TGTCTTTCTTTCACAGGAAA+TGG 0.294905 3_4:-53405644 None:intergenic
CTGCTGCAGACTTGACTATC+AGG 0.298525 3_4:+53404863 Msa0506750:intron
AAGTGCTTTACATGGTTATC+AGG 0.308889 3_4:-53404206 None:intergenic
TGGATATGGGTTGCCACTTC+AGG 0.311465 3_4:+53405167 Msa0506750:CDS
GCTGGAAAATACAAAACTTC+AGG 0.319386 3_4:+53404568 Msa0506750:CDS
GGGAACCAAAAGAGATATTA+AGG 0.322733 3_4:-53405221 None:intergenic
TGCTAAGGAGAGAGATTTGC+AGG 0.327633 3_4:+53409059 Msa0506750:CDS
TCAATCACCAAATCATTAAT+GGG 0.328904 3_4:-53405243 None:intergenic
TTTAGGGCGGACAACTTCAT+AGG 0.340630 3_4:-53404297 None:intergenic
TGCAAATCTGCTGCAATTAC+CGG 0.340964 3_4:+53403222 Msa0506750:five_prime_UTR
AGGGCTGATTATTCTCAAAA+TGG 0.345796 3_4:-53404655 None:intergenic
CATATATATACACTAGAATA+AGG 0.350488 3_4:+53409410 Msa0506750:three_prime_UTR
TATTTCCACTTCTAGTTTGT+GGG 0.353054 3_4:+53404983 Msa0506750:CDS
GATTGTTATGAGAAGAAGTT+AGG 0.359037 3_4:+53409114 Msa0506750:CDS
ATATTTCCACTTCTAGTTTG+TGG 0.370550 3_4:+53404982 Msa0506750:CDS
GAGCATTATAATCTTGTTCA+TGG 0.371780 3_4:+53404743 Msa0506750:CDS
TTCTCAAAATGGATAACAAT+TGG 0.382836 3_4:-53404644 None:intergenic
CAGGGTGGTTTGACTTTAGT+AGG 0.384720 3_4:+53408417 Msa0506750:intron
GTAACTTTACCTAAAGGCCT+TGG 0.391130 3_4:+53404350 Msa0506750:CDS
CAGGGATCTGAATTGAAATA+TGG 0.392730 3_4:+53404587 Msa0506750:CDS
CTGGTTCAGTGAGAGCGTTT+TGG 0.397574 3_4:+53403250 Msa0506750:five_prime_UTR
AGATTTGCAGGAGAAGCTTA+TGG 0.399523 3_4:+53409071 Msa0506750:CDS
TAAGAGGTGCATCTGCCTTT+AGG 0.408931 3_4:+53404898 Msa0506750:CDS
AGGAAGAGGGAATATCTTTA+GGG 0.416520 3_4:-53404313 None:intergenic
GGAAAGGCGAAATCATCTTC+TGG 0.418481 3_4:+53404263 Msa0506750:CDS
GAGCTCATTCTGTTTACTAC+AGG 0.418845 3_4:+53404946 Msa0506750:CDS
GATTGGACCTTCACGGGATA+AGG 0.432111 3_4:-53404500 None:intergenic
GAGGAAGGGAAATTGAAAAT+CGG 0.432426 3_4:+53409136 Msa0506750:CDS
ATGAGAAGAAGTTAGGAGGA+AGG 0.433364 3_4:+53409121 Msa0506750:CDS
AAGCCAGAAATCAACATTAA+CGG 0.434432 3_4:-53408510 None:intergenic
GGATGAGATCGGAGAGGACC+TGG 0.435073 3_4:-53403376 None:intergenic
CCGCACCACTACCACTCTTA+AGG 0.447901 3_4:+53403590 Msa0506750:CDS
GTAATTTAACATTGAGCGAT+TGG 0.448219 3_4:-53404517 None:intergenic
ACCTCATGTCTTTCTTTCAC+AGG 0.448961 3_4:-53405650 None:intergenic
GACTTCTTGTTTGGAGTCGA+TGG 0.451851 3_4:+53405189 Msa0506750:CDS
TAACTTTACCTAAAGGCCTT+GGG 0.455605 3_4:+53404351 Msa0506750:CDS
TTATAATAGACCTGCAATAC+AGG 0.458777 3_4:-53408459 None:intergenic
GGTTCAAGCAACTATTCATC+AGG 0.459505 3_4:+53408712 Msa0506750:intron
GTTTACTACAGGGATGAAAT+CGG 0.459929 3_4:+53404957 Msa0506750:CDS
TATTCTGTAACTTTACCTAA+AGG 0.460646 3_4:+53404344 Msa0506750:CDS
TTCTTCTCTAGCACGACAAC+AGG 0.460738 3_4:-53405801 None:intergenic
AAATGATAAATTTATTGAAA+GGG 0.462208 3_4:+53403143 None:intergenic
TCAACCGTCTTTCTATGCTC+AGG 0.463333 3_4:+53408484 Msa0506750:CDS
GGAGATTGAGATATCCCATT+GGG 0.465275 3_4:+53404703 Msa0506750:CDS
AGCAACGACTAATGATACTA+TGG 0.470319 3_4:-53408736 None:intergenic
TAAAGATATTCCCTCTTCCT+TGG 0.470995 3_4:+53404316 Msa0506750:CDS
TCTAGGACAGGTGATATTCA+AGG 0.471596 3_4:+53408800 Msa0506750:CDS
TGGAAATGGTTGCAATATAT+GGG 0.474469 3_4:-53404414 None:intergenic
TGAGAAGAAGTTAGGAGGAA+GGG 0.475108 3_4:+53409122 Msa0506750:CDS
CTGGAAAATACAAAACTTCA+GGG 0.476503 3_4:+53404569 Msa0506750:CDS
AAAATGATAAATTTATTGAA+AGG 0.476699 3_4:+53403142 None:intergenic
AAGTAAAACAAGGTCAAAAT+GGG 0.479563 3_4:-53409271 None:intergenic
AATGGAGGAAGATTCTCATA+TGG 0.481992 3_4:-53404611 None:intergenic
GCGAAATCATCTTCTGGTGT+TGG 0.483362 3_4:+53404269 Msa0506750:CDS
GCAGATGCACCTCTTACATA+TGG 0.485700 3_4:-53404891 None:intergenic
GCTGCAATTACCGGGATCTC+TGG 0.488390 3_4:+53403231 Msa0506750:five_prime_UTR
GGTAATATTTGAGCGGCTTG+TGG 0.494892 3_4:-53408911 None:intergenic
ACTTACACGACGGTCAACTT+TGG 0.499801 3_4:-53403402 None:intergenic
CTTATTTGGCAAAGATCCAA+TGG 0.502030 3_4:+53408601 Msa0506750:CDS
CTTGGCAGTAAGACGCCTAA+AGG 0.502523 3_4:-53404913 None:intergenic
TTGCGTGATCTTTCTAGGAC+AGG 0.503122 3_4:+53408788 Msa0506750:CDS
CAAATAAGATGCAGAAGTCT+TGG 0.505500 3_4:-53408586 None:intergenic
GAGCACCTTAAGAGTGGTAG+TGG 0.506326 3_4:-53403595 None:intergenic
ATTGAGCGATTGGACCTTCA+CGG 0.508824 3_4:-53404507 None:intergenic
AGTTGATTACCTCTTCCCAT+TGG 0.512116 3_4:-53408617 None:intergenic
AATAGAGTCCTACACAAAGC+TGG 0.512238 3_4:+53404550 Msa0506750:CDS
AGAATAAGTTGCCAAGGAAG+AGG 0.516063 3_4:-53404327 None:intergenic
TGCACCTCTTACATATGGCC+TGG 0.517740 3_4:-53404886 None:intergenic
TTGAGCGATTGGACCTTCAC+GGG 0.522891 3_4:-53404506 None:intergenic
TAGGACTCTATTCTTGCCTC+AGG 0.522970 3_4:-53404539 None:intergenic
GAGGACCTGGGAGGATAGAA+TGG 0.523253 3_4:-53403363 None:intergenic
CAAAATGGATAACAATTGGC+AGG 0.524969 3_4:-53404640 None:intergenic
ATGAGCTCTTGGTGGCAGCT+TGG 0.525565 3_4:-53404931 None:intergenic
GAATAAGTTGCCAAGGAAGA+GGG 0.531898 3_4:-53404326 None:intergenic
TTCACAGGAAATGGAACAGA+TGG 0.535738 3_4:-53405635 None:intergenic
TAGTAAACAGAATGAGCTCT+TGG 0.535990 3_4:-53404942 None:intergenic
CTTTCAGGTTGTCTTGCCAG+AGG 0.536714 3_4:+53405595 Msa0506750:intron
ACAATTGGCAGGTATGAGAA+TGG 0.537574 3_4:-53404629 None:intergenic
TTTCAGGTTGTCTTGCCAGA+GGG 0.540711 3_4:+53405596 Msa0506750:intron
AACTCTTTAGCAACGGCGAA+GGG 0.542494 3_4:-53404674 None:intergenic
TGATCTGTACATTGCCCCAA+TGG 0.542650 3_4:-53404718 None:intergenic
TGAAAATGCTCATTATGCTC+AGG 0.547728 3_4:-53405834 None:intergenic
TGTTATGAGAAGAAGTTAGG+AGG 0.549117 3_4:+53409117 Msa0506750:CDS
CAGGCCAGGCCATATGTAAG+AGG 0.549205 3_4:+53404882 Msa0506750:CDS
CACGACGGTCAACTTTGGTA+AGG 0.549384 3_4:-53403397 None:intergenic
CTAGGACAGGTGATATTCAA+GGG 0.554420 3_4:+53408801 Msa0506750:CDS
CTTCGCCGTTGCTAAAGAGT+TGG 0.554612 3_4:+53404676 Msa0506750:CDS
TATTGAAAGGGTGCAAAGCA+TGG 0.554839 3_4:+53403155 Msa0506750:five_prime_UTR
CAACCGTCTTTCTATGCTCA+GGG 0.556453 3_4:+53408485 Msa0506750:CDS
TTACCTAAAGGCCTTGGGAA+GGG 0.556651 3_4:+53404356 Msa0506750:CDS
GCAAATCTGCTGCAATTACC+GGG 0.557395 3_4:+53403223 Msa0506750:five_prime_UTR
TCAAACTTTCGCCCTTCCCA+AGG 0.557699 3_4:-53404367 None:intergenic
GTCACCCCACAAACTAGAAG+TGG 0.557838 3_4:-53404988 None:intergenic
TTATTTGGCAAAGATCCAAT+GGG 0.565258 3_4:+53408602 Msa0506750:CDS
CTTTACATGGTTATCAGGAA+AGG 0.566975 3_4:-53404201 None:intergenic
AGCAACACTTAACGAAGGAA+AGG 0.568080 3_4:+53404241 Msa0506750:CDS
TGTATGCTAAGTGCTTTACA+TGG 0.568391 3_4:-53404214 None:intergenic
ATTTCCACTTCTAGTTTGTG+GGG 0.568670 3_4:+53404984 Msa0506750:CDS
GGCAAAGATCCAATGGGAAG+AGG 0.571287 3_4:+53408608 Msa0506750:CDS
TTAGGGCGGACAACTTCATA+GGG 0.576553 3_4:-53404296 None:intergenic
GCAGACTTGACTATCAGGCC+AGG 0.579305 3_4:+53404868 Msa0506750:intron
GCAACACTTAACGAAGGAAA+GGG 0.580045 3_4:+53404242 Msa0506750:CDS
GAAGGGCGAAAGTTTGACGT+TGG 0.580960 3_4:+53404373 Msa0506750:CDS
GTGTCGCAGGTAGAGAATGC+AGG 0.581081 3_4:+53404149 Msa0506750:intron
TCTTTCTCCTTATCCCGTGA+AGG 0.581200 3_4:+53404493 Msa0506750:CDS
TTTACCTAAAGGCCTTGGGA+AGG 0.581516 3_4:+53404355 Msa0506750:CDS
CAATCACCAAATCATTAATG+GGG 0.584647 3_4:-53405242 None:intergenic
GACCTTGGGTAATATTTGAG+CGG 0.585756 3_4:-53408918 None:intergenic
AGTTACAGAATAAGTTGCCA+AGG 0.586321 3_4:-53404333 None:intergenic
TAAACAGAATGAGCTCTTGG+TGG 0.587661 3_4:-53404939 None:intergenic
CCAAACAAGAAGTCCTGAAG+TGG 0.588215 3_4:-53405180 None:intergenic
ATTTACCATTCTATCCTCCC+AGG 0.591306 3_4:+53403358 Msa0506750:CDS
TCTCACTGAACCAGAGATCC+CGG 0.591331 3_4:-53403241 None:intergenic
AACTTTGAGCACCTTAAGAG+TGG 0.594308 3_4:-53403601 None:intergenic
CCGTTGCTAAAGAGTTGGTG+AGG 0.595956 3_4:+53404681 Msa0506750:CDS
CAACTCTTTAGCAACGGCGA+AGG 0.602379 3_4:-53404675 None:intergenic
AACTTTGGTAAGGATGAGAT+CGG 0.602673 3_4:-53403387 None:intergenic
CATGGCGGTGCTCAGAGCAA+AGG 0.603405 3_4:+53404761 Msa0506750:CDS
GATGAGATCGGAGAGGACCT+GGG 0.604322 3_4:-53403375 None:intergenic
AGCTCATTCTGTTTACTACA+GGG 0.610364 3_4:+53404947 Msa0506750:CDS
GTCTGCATGCATGTAGACAA+TGG 0.610818 3_4:-53408553 None:intergenic
AACATTCGAACAAGAAACAA+AGG 0.611122 3_4:+53403179 Msa0506750:five_prime_UTR
GATTGACACTCTTGTTGTGA+AGG 0.615337 3_4:+53405260 Msa0506750:CDS
GGTGGAGGAAGTAATTGCTA+AGG 0.617368 3_4:+53409044 Msa0506750:intron
GATCTGTACATTGCCCCAAT+GGG 0.625357 3_4:-53404717 None:intergenic
ATTTCATGATGACGATGATG+AGG 0.626481 3_4:+53403306 Msa0506750:exon
AAGTGGCAACCCATATCCAA+TGG 0.630677 3_4:-53405163 None:intergenic
GGGAGATTGAGATATCCCAT+TGG 0.633387 3_4:+53404702 Msa0506750:CDS
AGCCGCTCAAATATTACCCA+AGG 0.639940 3_4:+53408916 Msa0506750:CDS
CGTTGCTAAAGAGTTGGTGA+GGG 0.643300 3_4:+53404682 Msa0506750:CDS
ACTTAACGAAGGAAAGGGAA+AGG 0.652066 3_4:+53404247 Msa0506750:CDS
TCCTGTGAAAGAAAGACATG+AGG 0.667785 3_4:+53405649 Msa0506750:CDS
GCTCCCTGAGCATAGAAAGA+CGG 0.670119 3_4:-53408488 None:intergenic
GCTCAATGTTAAATTACCTG+AGG 0.670175 3_4:+53404523 Msa0506750:CDS
AATCACCAAATCATTAATGG+GGG 0.672170 3_4:-53405241 None:intergenic
CCTCACCAACTCTTTAGCAA+CGG 0.676013 3_4:-53404681 None:intergenic
CCTTAAGAGTGGTAGTGGTG+CGG 0.677361 3_4:-53403590 None:intergenic
GAACTAAATCAAGTAAAACA+AGG 0.678884 3_4:-53409281 None:intergenic
ATTGGCAGGTATGAGAATGG+AGG 0.680768 3_4:-53404626 None:intergenic
AAGAGGGAATATCTTTAGGG+CGG 0.682262 3_4:-53404310 None:intergenic
ATGTCAGCAACACTTAACGA+AGG 0.697211 3_4:+53404236 Msa0506750:CDS
CTCGTTGAAAGAGCTCACAA+AGG 0.716021 3_4:+53408853 Msa0506750:CDS
CATTATAATCTTGTTCATGG+CGG 0.724346 3_4:+53404746 Msa0506750:CDS
CAGAACTTGAGATCGAACCT+CGG 0.724721 3_4:+53405106 Msa0506750:CDS
GAGATTGAGATATCCCATTG+GGG 0.726808 3_4:+53404704 Msa0506750:CDS
TGGTAAGGATGAGATCGGAG+AGG 0.732813 3_4:-53403382 None:intergenic
GAGATCGGAGAGGACCTGGG+AGG 0.742940 3_4:-53403372 None:intergenic
TGCATGCATGTAGACAATGG+AGG 0.747749 3_4:-53408550 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTTTTTTTTGTG+TGG + chr3_4:53403640-53403659 Msa0506750:intron 10.0%
!!! TTTTTTTTTTTTTTTTGTGT+GGG + chr3_4:53403641-53403660 Msa0506750:intron 10.0%
!!! AAAAATTCATTTTATATTGT+TGG - chr3_4:53405919-53405938 None:intergenic 10.0%
!!! AAATTATTTTCCATTTTTTA+TGG - chr3_4:53407097-53407116 None:intergenic 10.0%
!!! TTATTTTATTTTTGTTTTTC+AGG + chr3_4:53409023-53409042 Msa0506750:intron 10.0%
!!! AAAGTTAAATTACAAAGTTT+TGG - chr3_4:53403691-53403710 None:intergenic 15.0%
!! AAGAATAATAAATGTTGTAT+TGG + chr3_4:53406158-53406177 Msa0506750:intron 15.0%
!!! AAATAATTTGAAATTTTTGC+TGG + chr3_4:53407108-53407127 Msa0506750:intron 15.0%
!!! ATATGATATTTGAAGTATTT+TGG - chr3_4:53406712-53406731 None:intergenic 15.0%
!!! TTCAAGATACTTTTTTTTTT+TGG + chr3_4:53407422-53407441 Msa0506750:intron 15.0%
!!! ACAATTAGGTTATTTTATAT+CGG - chr3_4:53408249-53408268 None:intergenic 15.0%
!!! TTTTTTTTGTACAAACAATT+AGG - chr3_4:53408263-53408282 None:intergenic 15.0%
!! AGAATTGAAAAATCTTAGAT+CGG - chr3_4:53403470-53403489 None:intergenic 20.0%
!!! TGAACTTTAGTTTAAAAACT+TGG + chr3_4:53403945-53403964 Msa0506750:intron 20.0%
!! AAGAAAGTAAAATTATGTGT+TGG - chr3_4:53405308-53405327 None:intergenic 20.0%
!!! AATTCATTTTATATTGTTGG+TGG - chr3_4:53405916-53405935 None:intergenic 20.0%
!! TCTTAAAAATAAGATGTTTG+TGG - chr3_4:53405955-53405974 None:intergenic 20.0%
!! CCACTAACTATAATTAATAA+GGG - chr3_4:53406091-53406110 None:intergenic 20.0%
!! TCCACTAACTATAATTAATA+AGG - chr3_4:53406092-53406111 None:intergenic 20.0%
!! TGATTGAAATGCAATAAATA+AGG + chr3_4:53406121-53406140 Msa0506750:intron 20.0%
!! GATTGAAATGCAATAAATAA+GGG + chr3_4:53406122-53406141 Msa0506750:intron 20.0%
!!! AATAAATAAGGGTATGTTAA+TGG + chr3_4:53406133-53406152 Msa0506750:intron 20.0%
!!! TACTGGTTTTATTATTGAAT+TGG + chr3_4:53406307-53406326 Msa0506750:intron 20.0%
!!! ACTGGTTTTATTATTGAATT+GGG + chr3_4:53406308-53406327 Msa0506750:intron 20.0%
!! AGCTTGAAAATAGTTTATAA+TGG + chr3_4:53406409-53406428 Msa0506750:intron 20.0%
!!! GTTTGATTTTGATTGAATTA+AGG - chr3_4:53406794-53406813 None:intergenic 20.0%
!! CAAAACTATTGAATACAAAA+TGG + chr3_4:53406964-53406983 Msa0506750:intron 20.0%
!!! GTTTGATTTTGATTGAATTA+AGG - chr3_4:53406794-53406813 None:intergenic 20.0%
!! TTGTAACATTCCAATTAAAT+TGG - chr3_4:53407815-53407834 None:intergenic 20.0%
!!! AAAAACCCTTTTTTTTACAT+GGG - chr3_4:53407917-53407936 None:intergenic 20.0%
!!! AAAAAACCCTTTTTTTTACA+TGG - chr3_4:53407918-53407937 None:intergenic 20.0%
!!! CAATTAGGTTATTTTATATC+GGG - chr3_4:53408248-53408267 None:intergenic 20.0%
!!! CTTTTAAAATGTGAACAATT+AGG - chr3_4:53408289-53408308 None:intergenic 20.0%
!!! ATTTGATTACTTTTTGTACA+GGG + chr3_4:53408399-53408418 Msa0506750:intron 20.0%
!!! TTTTATTTTTGTTTTTCAGG+TGG + chr3_4:53409026-53409045 Msa0506750:intron 20.0%
!!! TTTAGTTCAGAAATTTTTAG+CGG + chr3_4:53409296-53409315 Msa0506750:three_prime_UTR 20.0%
!! CATATATATACACTAGAATA+AGG + chr3_4:53409410-53409429 Msa0506750:three_prime_UTR 20.0%
!! AAGTCTTCATTTCATCTTTT+AGG + chr3_4:53403421-53403440 Msa0506750:intron 25.0%
!! AGTCTTCATTTCATCTTTTA+GGG + chr3_4:53403422-53403441 Msa0506750:intron 25.0%
! TAATTAGTATTTATCGATGC+TGG + chr3_4:53403489-53403508 Msa0506750:intron 25.0%
!!! TTTTTTTTTTTTTGTGTGGG+TGG + chr3_4:53403644-53403663 Msa0506750:intron 25.0%
!!! TTTTTTTTTTTTGTGTGGGT+GGG + chr3_4:53403645-53403664 Msa0506750:intron 25.0%
!! TGTCATTGTATTTTATCATG+TGG - chr3_4:53403881-53403900 None:intergenic 25.0%
! ACATGATAAAATACAATGAC+AGG + chr3_4:53403880-53403899 Msa0506750:intron 25.0%
! CATGATAAAATACAATGACA+GGG + chr3_4:53403881-53403900 Msa0506750:intron 25.0%
! TATTCTGTAACTTTACCTAA+AGG + chr3_4:53404344-53404363 Msa0506750:CDS 25.0%
! TTCTCAAAATGGATAACAAT+TGG - chr3_4:53404647-53404666 None:intergenic 25.0%
! TCAATCACCAAATCATTAAT+GGG - chr3_4:53405246-53405265 None:intergenic 25.0%
!!! TCATTATTTTGTTGCAAACT+TGG + chr3_4:53405336-53405355 Msa0506750:intron 25.0%
!!! TTTACCTGTATATTTTTCAG+AGG + chr3_4:53405407-53405426 Msa0506750:intron 25.0%
! ACATAGATATCTATCATCTA+TGG - chr3_4:53405702-53405721 None:intergenic 25.0%
!!! TATTACTGTTGCATCTTTTT+TGG + chr3_4:53405859-53405878 Msa0506750:intron 25.0%
! CCCTTATTAATTATAGTTAG+TGG + chr3_4:53406088-53406107 Msa0506750:intron 25.0%
!! TGTTGTATTGGTATTGTAAA+AGG + chr3_4:53406170-53406189 Msa0506750:intron 25.0%
!! GTTGTATTGGTATTGTAAAA+GGG + chr3_4:53406171-53406190 Msa0506750:intron 25.0%
!! TTTGCAGTTTTCTTTTCTAT+TGG + chr3_4:53406353-53406372 Msa0506750:intron 25.0%
!! CTCTTTTCATTATGAAACTT+AGG - chr3_4:53406385-53406404 None:intergenic 25.0%
!!! CCAGATTAGATTTTTTACAT+TGG - chr3_4:53406478-53406497 None:intergenic 25.0%
! CCAATGTAAAAAATCTAATC+TGG + chr3_4:53406475-53406494 Msa0506750:intron 25.0%
! TTGTAACCTACCATTTAATT+TGG - chr3_4:53406942-53406961 None:intergenic 25.0%
! TTGTAGGATACTAGATTTAT+TGG + chr3_4:53407181-53407200 Msa0506750:intron 25.0%
! TGTAGGATACTAGATTTATT+GGG + chr3_4:53407182-53407201 Msa0506750:intron 25.0%
! ACATTGCATTATTATATGCA+GGG - chr3_4:53407519-53407538 None:intergenic 25.0%
! AAACATAACTCCAAATTCTA+AGG + chr3_4:53407645-53407664 Msa0506750:intron 25.0%
! AACATAACTCCAAATTCTAA+GGG + chr3_4:53407646-53407665 Msa0506750:intron 25.0%
! GTAAGATACTAGATTGAATT+GGG + chr3_4:53407997-53408016 Msa0506750:intron 25.0%
!! GCTCTTTATAAACTATTTTC+AGG - chr3_4:53408180-53408199 None:intergenic 25.0%
!!! GATTTGATTACTTTTTGTAC+AGG + chr3_4:53408398-53408417 Msa0506750:intron 25.0%
! TCTTTACTTGCAAATGATTA+TGG + chr3_4:53408656-53408675 Msa0506750:intron 25.0%
! TATGGAACTATAAATCAAGA+GGG - chr3_4:53409002-53409021 None:intergenic 25.0%
! TTATGGAACTATAAATCAAG+AGG - chr3_4:53409003-53409022 None:intergenic 25.0%
! ACAAGAGATTTATGATCTTA+TGG + chr3_4:53409194-53409213 Msa0506750:CDS 25.0%
! AAGTAAAACAAGGTCAAAAT+GGG - chr3_4:53409274-53409293 None:intergenic 25.0%
! GAACTAAATCAAGTAAAACA+AGG - chr3_4:53409284-53409303 None:intergenic 25.0%
!!! CAAAGTTTTTAAGAAATGAG+GGG - chr3_4:53409486-53409505 None:intergenic 25.0%
!!! GCAAAGTTTTTAAGAAATGA+GGG - chr3_4:53409487-53409506 None:intergenic 25.0%
!!! AGCAAAGTTTTTAAGAAATG+AGG - chr3_4:53409488-53409507 None:intergenic 25.0%
AACATTCGAACAAGAAACAA+AGG + chr3_4:53403179-53403198 Msa0506750:five_prime_UTR 30.0%
AGATCAATCTGCAAACAATA+GGG - chr3_4:53403555-53403574 None:intergenic 30.0%
GCATCAAAGGAAATAAGATA+AGG - chr3_4:53404093-53404112 None:intergenic 30.0%
TGGAAATGGTTGCAATATAT+GGG - chr3_4:53404417-53404436 None:intergenic 30.0%
GTAATTTAACATTGAGCGAT+TGG - chr3_4:53404520-53404539 None:intergenic 30.0%
CTGGAAAATACAAAACTTCA+GGG + chr3_4:53404569-53404588 Msa0506750:CDS 30.0%
GAGCATTATAATCTTGTTCA+TGG + chr3_4:53404743-53404762 Msa0506750:CDS 30.0%
CATTATAATCTTGTTCATGG+CGG + chr3_4:53404746-53404765 Msa0506750:CDS 30.0%
AATTCAGAATCACAGAAACA+AGG - chr3_4:53404803-53404822 None:intergenic 30.0%
!! ATATTTCCACTTCTAGTTTG+TGG + chr3_4:53404982-53405001 Msa0506750:CDS 30.0%
!! TATTTCCACTTCTAGTTTGT+GGG + chr3_4:53404983-53405002 Msa0506750:CDS 30.0%
AATCACCAAATCATTAATGG+GGG - chr3_4:53405244-53405263 None:intergenic 30.0%
CAATCACCAAATCATTAATG+GGG - chr3_4:53405245-53405264 None:intergenic 30.0%
GTCAATCACCAAATCATTAA+TGG - chr3_4:53405247-53405266 None:intergenic 30.0%
! AGTTCCTCTGAAAAATATAC+AGG - chr3_4:53405414-53405433 None:intergenic 30.0%
!!! TTTTTCCTGCTTTTTGTCAT+TGG + chr3_4:53405510-53405529 Msa0506750:intron 30.0%
GTCATTGTAGTATATTGTGT+AGG + chr3_4:53405538-53405557 Msa0506750:intron 30.0%
AGATATCTATCATCTATGGT+TGG - chr3_4:53405698-53405717 None:intergenic 30.0%
ATCTATGTCATTCCATTGTT+TGG + chr3_4:53405714-53405733 Msa0506750:intron 30.0%
TCTATGTCATTCCATTGTTT+GGG + chr3_4:53405715-53405734 Msa0506750:intron 30.0%
CTTTGTCTGCAACAATTATA+TGG - chr3_4:53405754-53405773 None:intergenic 30.0%
ATATCCTGAATTTCATGTAC+TGG + chr3_4:53406290-53406309 Msa0506750:intron 30.0%
AAAACCAGTACATGAAATTC+AGG - chr3_4:53406297-53406316 None:intergenic 30.0%
TGAAAGTTGAAAATAAGCCT+AGG - chr3_4:53406572-53406591 None:intergenic 30.0%
TTGTAACCAACCAGTTAATT+TGG - chr3_4:53406907-53406926 None:intergenic 30.0%
CAAAACAGCTCCAAATTAAA+TGG + chr3_4:53406929-53406948 Msa0506750:intron 30.0%
TTCAAATGTCACAGTATTGT+AGG + chr3_4:53407165-53407184 Msa0506750:intron 30.0%
TGATACACGATTCAAAAAAG+TGG - chr3_4:53407322-53407341 None:intergenic 30.0%
ACCTTATAAGGTGAATAAGT+GGG + chr3_4:53407470-53407489 Msa0506750:intron 30.0%
CATTGCATTATTATATGCAG+GGG - chr3_4:53407518-53407537 None:intergenic 30.0%
GACATTGCATTATTATATGC+AGG - chr3_4:53407520-53407539 None:intergenic 30.0%
GGGAATAGTTCCAATTTAAT+TGG + chr3_4:53407802-53407821 Msa0506750:intron 30.0%
GTTGACCCTATAATATTTGA+CGG + chr3_4:53407859-53407878 Msa0506750:intron 30.0%
TTGACCCTATAATATTTGAC+GGG + chr3_4:53407860-53407879 Msa0506750:intron 30.0%
!!! AAAAAAAGGGTTTTTTCTGC+CGG + chr3_4:53407922-53407941 Msa0506750:intron 30.0%
CGTAAGATACTAGATTGAAT+TGG + chr3_4:53407996-53408015 Msa0506750:intron 30.0%
TAGATTGAATTGGGATACAT+GGG + chr3_4:53408006-53408025 Msa0506750:intron 30.0%
TCTAACCTTCATACTTAGAT+GGG - chr3_4:53408340-53408359 None:intergenic 30.0%
ATCTAACCTTCATACTTAGA+TGG - chr3_4:53408341-53408360 None:intergenic 30.0%
TTATAATAGACCTGCAATAC+AGG - chr3_4:53408462-53408481 None:intergenic 30.0%
AAGCCAGAAATCAACATTAA+CGG - chr3_4:53408513-53408532 None:intergenic 30.0%
TTATTTGGCAAAGATCCAAT+GGG + chr3_4:53408602-53408621 Msa0506750:CDS 30.0%
!! ACACTTTTGTTTCATCATTC+AGG + chr3_4:53408691-53408710 Msa0506750:intron 30.0%
! AATATTACCCAAGGTCATTT+TGG + chr3_4:53408925-53408944 Msa0506750:intron 30.0%
! ATCAAGAGGGAAATTTTATG+TGG - chr3_4:53408989-53409008 None:intergenic 30.0%
!!! TATTTTTGTTTTTCAGGTGG+AGG + chr3_4:53409029-53409048 Msa0506750:intron 30.0%
GATTGTTATGAGAAGAAGTT+AGG + chr3_4:53409114-53409133 Msa0506750:CDS 30.0%
CAAGTAAAACAAGGTCAAAA+TGG - chr3_4:53409275-53409294 None:intergenic 30.0%
! ATTTCATGATGACGATGATG+AGG + chr3_4:53403306-53403325 Msa0506750:exon 35.0%
AACTTTGGTAAGGATGAGAT+CGG - chr3_4:53403390-53403409 None:intergenic 35.0%
TGAAATGAAGACTTACACGA+CGG - chr3_4:53403415-53403434 None:intergenic 35.0%
TGCAAACAATAGGGAAACAA+TGG - chr3_4:53403546-53403565 None:intergenic 35.0%
CAGATCAATCTGCAAACAAT+AGG - chr3_4:53403556-53403575 None:intergenic 35.0%
AAGTTCTGTAGACAACAACA+TGG - chr3_4:53403837-53403856 None:intergenic 35.0%
TTCATACTTGTGCAAATGAG+AGG + chr3_4:53404001-53404020 Msa0506750:intron 35.0%
GAGCAATTACATTTAGCAAG+TGG - chr3_4:53404062-53404081 None:intergenic 35.0%
AAAGTAAATCGCAGCATCAA+AGG - chr3_4:53404106-53404125 None:intergenic 35.0%
CTTTACATGGTTATCAGGAA+AGG - chr3_4:53404204-53404223 None:intergenic 35.0%
AAGTGCTTTACATGGTTATC+AGG - chr3_4:53404209-53404228 None:intergenic 35.0%
TGTATGCTAAGTGCTTTACA+TGG - chr3_4:53404217-53404236 None:intergenic 35.0%
AGGAAGAGGGAATATCTTTA+GGG - chr3_4:53404316-53404335 None:intergenic 35.0%
AAGGAAGAGGGAATATCTTT+AGG - chr3_4:53404317-53404336 None:intergenic 35.0%
TAAAGATATTCCCTCTTCCT+TGG + chr3_4:53404316-53404335 Msa0506750:CDS 35.0%
AGTTACAGAATAAGTTGCCA+AGG - chr3_4:53404336-53404355 None:intergenic 35.0%
TAACTTTACCTAAAGGCCTT+GGG + chr3_4:53404351-53404370 Msa0506750:CDS 35.0%
CTGGAAATGGTTGCAATATA+TGG - chr3_4:53404418-53404437 None:intergenic 35.0%
!! TGCGTAATTTTCTCTGGAAA+TGG - chr3_4:53404431-53404450 None:intergenic 35.0%
GCTCAATGTTAAATTACCTG+AGG + chr3_4:53404523-53404542 Msa0506750:CDS 35.0%
!! TGTATTTTCCAGCTTTGTGT+AGG - chr3_4:53404561-53404580 None:intergenic 35.0%
GCTGGAAAATACAAAACTTC+AGG + chr3_4:53404568-53404587 Msa0506750:CDS 35.0%
CAGGGATCTGAATTGAAATA+TGG + chr3_4:53404587-53404606 Msa0506750:CDS 35.0%
AATGGAGGAAGATTCTCATA+TGG - chr3_4:53404614-53404633 None:intergenic 35.0%
CAAAATGGATAACAATTGGC+AGG - chr3_4:53404643-53404662 None:intergenic 35.0%
AGGGCTGATTATTCTCAAAA+TGG - chr3_4:53404658-53404677 None:intergenic 35.0%
TAGTAAACAGAATGAGCTCT+TGG - chr3_4:53404945-53404964 None:intergenic 35.0%
AGCTCATTCTGTTTACTACA+GGG + chr3_4:53404947-53404966 Msa0506750:CDS 35.0%
GTTTACTACAGGGATGAAAT+CGG + chr3_4:53404957-53404976 Msa0506750:CDS 35.0%
!! ATTTCCACTTCTAGTTTGTG+GGG + chr3_4:53404984-53405003 Msa0506750:CDS 35.0%
!! TGGAAAACTGCTTTTACCAT+TGG + chr3_4:53405147-53405166 Msa0506750:CDS 35.0%
!! ACTGCTTTTACCATTGGATA+TGG + chr3_4:53405153-53405172 Msa0506750:CDS 35.0%
!! CTGCTTTTACCATTGGATAT+GGG + chr3_4:53405154-53405173 Msa0506750:CDS 35.0%
! CGCTTCCTTAATATCTCTTT+TGG + chr3_4:53405216-53405235 Msa0506750:CDS 35.0%
GGGAACCAAAAGAGATATTA+AGG - chr3_4:53405224-53405243 None:intergenic 35.0%
CAAACTTGGAATGCAATCTT+TGG + chr3_4:53405350-53405369 Msa0506750:intron 35.0%
! AGGAACTAGAAGTATAGTAC+AGG + chr3_4:53405427-53405446 Msa0506750:intron 35.0%
AACAACCAATGACAAAAAGC+AGG - chr3_4:53405518-53405537 None:intergenic 35.0%
TGACTTACTAATACATCTGC+CGG + chr3_4:53405563-53405582 Msa0506750:intron 35.0%
! GAAATATCTTTTGAACCCTC+TGG - chr3_4:53405614-53405633 None:intergenic 35.0%
TGTCTTTCTTTCACAGGAAA+TGG - chr3_4:53405647-53405666 None:intergenic 35.0%
GGACTATAAAACCCAAACAA+TGG - chr3_4:53405729-53405748 None:intergenic 35.0%
GTCTGCAACAATTATATGGA+TGG - chr3_4:53405750-53405769 None:intergenic 35.0%
! TTTTCACACTTGGATATTGC+TGG + chr3_4:53405774-53405793 Msa0506750:CDS 35.0%
TGAAAATGCTCATTATGCTC+AGG - chr3_4:53405837-53405856 None:intergenic 35.0%
! TGAGCATAATGAGCATTTTC+AGG + chr3_4:53405836-53405855 Msa0506750:CDS 35.0%
!!! TACTGTTGCATCTTTTTTGG+AGG + chr3_4:53405862-53405881 Msa0506750:intron 35.0%
!!! CATTTTATATTGTTGGTGGC+TGG - chr3_4:53405912-53405931 None:intergenic 35.0%
!!! TGTCCCTTTTGAGTTTTACA+CGG + chr3_4:53406002-53406021 Msa0506750:intron 35.0%
TACCCGTGTAAAACTCAAAA+GGG - chr3_4:53406008-53406027 None:intergenic 35.0%
ATACCCGTGTAAAACTCAAA+AGG - chr3_4:53406009-53406028 None:intergenic 35.0%
GTTAGTGTCCTGAATTTGTA+AGG + chr3_4:53406256-53406275 Msa0506750:intron 35.0%
ATTTCCCTCCTTACAAATTC+AGG - chr3_4:53406267-53406286 None:intergenic 35.0%
TGTGATCATGGTAGTCAAAT+TGG + chr3_4:53406620-53406639 Msa0506750:intron 35.0%
GTGATCATGGTAGTCAAATT+GGG + chr3_4:53406621-53406640 Msa0506750:intron 35.0%
ACTCACCTTCTATTCCTTTA+CGG - chr3_4:53406867-53406886 None:intergenic 35.0%
ATAGCTCCAAATTAACTGGT+TGG + chr3_4:53406898-53406917 Msa0506750:intron 35.0%
ACAGCTCCAAATTAAATGGT+AGG + chr3_4:53406933-53406952 Msa0506750:intron 35.0%
!!! CATTTTTTATGGAACAGTCC+TGG - chr3_4:53407086-53407105 None:intergenic 35.0%
CAGGACTGTTCCATAAAAAA+TGG + chr3_4:53407084-53407103 Msa0506750:intron 35.0%
ATTTATTGGGATATGCATCG+TGG + chr3_4:53407195-53407214 Msa0506750:intron 35.0%
TTTATTGGGATATGCATCGT+GGG + chr3_4:53407196-53407215 Msa0506750:intron 35.0%
AAAAAGTGGTTGAACGATAC+AGG - chr3_4:53407308-53407327 None:intergenic 35.0%
TGGCTAGAATTCACCTTATA+AGG + chr3_4:53407458-53407477 Msa0506750:intron 35.0%
CACCTTATAAGGTGAATAAG+TGG + chr3_4:53407469-53407488 Msa0506750:intron 35.0%
CCTTATAAGGTGAATAAGTG+GGG + chr3_4:53407471-53407490 Msa0506750:intron 35.0%
! ACTTCCTCTTTTTCTCTCTA+CGG - chr3_4:53407744-53407763 None:intergenic 35.0%
GTGACCCGTCAAATATTATA+GGG - chr3_4:53407867-53407886 None:intergenic 35.0%
TGTGACCCGTCAAATATTAT+AGG - chr3_4:53407868-53407887 None:intergenic 35.0%
TACCGACCCATGTAAAAAAA+AGG + chr3_4:53407908-53407927 Msa0506750:intron 35.0%
ACCGACCCATGTAAAAAAAA+GGG + chr3_4:53407909-53407928 Msa0506750:intron 35.0%
!!! ACCCTTTTTTTTACATGGGT+CGG - chr3_4:53407913-53407932 None:intergenic 35.0%
CTAGATTGAATTGGGATACA+TGG + chr3_4:53408005-53408024 Msa0506750:intron 35.0%
TACGATATGAAAACAGCCAT+GGG - chr3_4:53408083-53408102 None:intergenic 35.0%
ATACGATATGAAAACAGCCA+TGG - chr3_4:53408084-53408103 None:intergenic 35.0%
!! TGGCTGTTTTCATATCGTAT+CGG + chr3_4:53408084-53408103 Msa0506750:intron 35.0%
!!! TGATTACTTTTTGTACAGGG+TGG + chr3_4:53408402-53408421 Msa0506750:intron 35.0%
CAAATAAGATGCAGAAGTCT+TGG - chr3_4:53408589-53408608 None:intergenic 35.0%
CAAGACTTCTGCATCTTATT+TGG + chr3_4:53408587-53408606 Msa0506750:CDS 35.0%
CTTATTTGGCAAAGATCCAA+TGG + chr3_4:53408601-53408620 Msa0506750:CDS 35.0%
AGCAACGACTAATGATACTA+TGG - chr3_4:53408739-53408758 None:intergenic 35.0%
TGTTATGAGAAGAAGTTAGG+AGG + chr3_4:53409117-53409136 Msa0506750:CDS 35.0%
GAGGAAGGGAAATTGAAAAT+CGG + chr3_4:53409136-53409155 Msa0506750:CDS 35.0%
! ACTGTCTAGAAGTATGTTTC+TGG - chr3_4:53409516-53409535 None:intergenic 35.0%
! TATTGAAAGGGTGCAAAGCA+TGG + chr3_4:53403155-53403174 Msa0506750:five_prime_UTR 40.0%
TGCAAATCTGCTGCAATTAC+CGG + chr3_4:53403222-53403241 Msa0506750:five_prime_UTR 40.0%
ATTTACCATTCTATCCTCCC+AGG + chr3_4:53403358-53403377 Msa0506750:CDS 40.0%
GGGAAACAATGGTCAGAAAA+AGG - chr3_4:53403535-53403554 None:intergenic 40.0%
AACTTTGAGCACCTTAAGAG+TGG - chr3_4:53403604-53403623 None:intergenic 40.0%
ATTTGAACAAAGGCTTACGG+AGG - chr3_4:53403724-53403743 None:intergenic 40.0%
TCCGTAAGCCTTTGTTCAAA+TGG + chr3_4:53403723-53403742 Msa0506750:intron 40.0%
GCCATTTGAACAAAGGCTTA+CGG - chr3_4:53403727-53403746 None:intergenic 40.0%
! CACAGTTGTCTGTGAGTTTT+AGG + chr3_4:53403802-53403821 Msa0506750:intron 40.0%
GGTTAAGTAGTTGCGAACAT+AGG + chr3_4:53403902-53403921 Msa0506750:intron 40.0%
TATTATCTTCCTTGTGTCGC+AGG + chr3_4:53404136-53404155 Msa0506750:intron 40.0%
ATGTCAGCAACACTTAACGA+AGG + chr3_4:53404236-53404255 Msa0506750:CDS 40.0%
AGCAACACTTAACGAAGGAA+AGG + chr3_4:53404241-53404260 Msa0506750:CDS 40.0%
GCAACACTTAACGAAGGAAA+GGG + chr3_4:53404242-53404261 Msa0506750:CDS 40.0%
ACTTAACGAAGGAAAGGGAA+AGG + chr3_4:53404247-53404266 Msa0506750:CDS 40.0%
! AAGAGGGAATATCTTTAGGG+CGG - chr3_4:53404313-53404332 None:intergenic 40.0%
GAATAAGTTGCCAAGGAAGA+GGG - chr3_4:53404329-53404348 None:intergenic 40.0%
AGAATAAGTTGCCAAGGAAG+AGG - chr3_4:53404330-53404349 None:intergenic 40.0%
GTAACTTTACCTAAAGGCCT+TGG + chr3_4:53404350-53404369 Msa0506750:CDS 40.0%
! TCAGCTTGCGTAATTTTCTC+TGG - chr3_4:53404437-53404456 None:intergenic 40.0%
AATAGAGTCCTACACAAAGC+TGG + chr3_4:53404550-53404569 Msa0506750:CDS 40.0%
ACAATTGGCAGGTATGAGAA+TGG - chr3_4:53404632-53404651 None:intergenic 40.0%
GGAGATTGAGATATCCCATT+GGG + chr3_4:53404703-53404722 Msa0506750:CDS 40.0%
GAGATTGAGATATCCCATTG+GGG + chr3_4:53404704-53404723 Msa0506750:CDS 40.0%
! AGAGCAAAGGAGAATTTTCC+AGG + chr3_4:53404774-53404793 Msa0506750:CDS 40.0%
ATCACAGAAACAAGGTAACC+TGG - chr3_4:53404795-53404814 None:intergenic 40.0%
TAAACAGAATGAGCTCTTGG+TGG - chr3_4:53404942-53404961 None:intergenic 40.0%
GAGCTCATTCTGTTTACTAC+AGG + chr3_4:53404946-53404965 Msa0506750:CDS 40.0%
TTTGTGGGGTGACTCAAAAA+AGG + chr3_4:53404998-53405017 Msa0506750:CDS 40.0%
! TTTTCCAGCCACCAAAAAGT+GGG - chr3_4:53405134-53405153 None:intergenic 40.0%
TGGTTCCCCCATTAATGATT+TGG + chr3_4:53405236-53405255 Msa0506750:CDS 40.0%
! GATTGACACTCTTGTTGTGA+AGG + chr3_4:53405260-53405279 Msa0506750:CDS 40.0%
TTCACAGGAAATGGAACAGA+TGG - chr3_4:53405638-53405657 None:intergenic 40.0%
TCCTGTGAAAGAAAGACATG+AGG + chr3_4:53405649-53405668 Msa0506750:CDS 40.0%
ACCTCATGTCTTTCTTTCAC+AGG - chr3_4:53405653-53405672 None:intergenic 40.0%
! GCAGACAAAGTTTTCACACT+TGG + chr3_4:53405764-53405783 Msa0506750:intron 40.0%
TACTCCCTCCATCTCATATT+AGG + chr3_4:53405979-53405998 Msa0506750:intron 40.0%
GACACCTAATATGAGATGGA+GGG - chr3_4:53405986-53406005 None:intergenic 40.0%
AAGGGACACCTAATATGAGA+TGG - chr3_4:53405990-53406009 None:intergenic 40.0%
!!! GTCCCTTTTGAGTTTTACAC+GGG + chr3_4:53406003-53406022 Msa0506750:intron 40.0%
!!! GACGACACCTATTTTTGAGA+CGG + chr3_4:53406226-53406245 Msa0506750:intron 40.0%
!!! ACACCTATTTTTGAGACGGA+GGG + chr3_4:53406230-53406249 Msa0506750:intron 40.0%
AGTGTCCTGAATTTGTAAGG+AGG + chr3_4:53406259-53406278 Msa0506750:intron 40.0%
GTGTCCTGAATTTGTAAGGA+GGG + chr3_4:53406260-53406279 Msa0506750:intron 40.0%
ACTAGCTGGATTTGTAAGGA+TGG + chr3_4:53406445-53406464 Msa0506750:intron 40.0%
TGGATTTGTAAGGATGGTGT+AGG + chr3_4:53406451-53406470 Msa0506750:intron 40.0%
AGACCTACTAGTTGTGATCA+TGG + chr3_4:53406608-53406627 Msa0506750:intron 40.0%
CTACCATGATCACAACTAGT+AGG - chr3_4:53406614-53406633 None:intergenic 40.0%
GAAACAGATCGTGTATGTGT+TGG + chr3_4:53406838-53406857 Msa0506750:intron 40.0%
GTAAAGGAATAGAAGGTGAG+TGG + chr3_4:53406866-53406885 Msa0506750:intron 40.0%
! AATAGAAGGTGAGTGGCTTT+TGG + chr3_4:53406873-53406892 Msa0506750:intron 40.0%
! ATAGAAGGTGAGTGGCTTTT+GGG + chr3_4:53406874-53406893 Msa0506750:intron 40.0%
GGGAATAGCTCCAAATTAAC+TGG + chr3_4:53406894-53406913 Msa0506750:intron 40.0%
GAATTTCAGTTGCAGAAACC+AGG - chr3_4:53407148-53407167 None:intergenic 40.0%
TATACTGGGTGTGATACTGA+TGG + chr3_4:53407236-53407255 Msa0506750:intron 40.0%
ATACTGGGTGTGATACTGAT+GGG + chr3_4:53407237-53407256 Msa0506750:intron 40.0%
GCATTGAGAAAACTCAAGCA+TGG + chr3_4:53407261-53407280 Msa0506750:intron 40.0%
CTCAAGCATGGTAGTCAAAT+CGG + chr3_4:53407273-53407292 Msa0506750:intron 40.0%
TCAAGCATGGTAGTCAAATC+GGG + chr3_4:53407274-53407293 Msa0506750:intron 40.0%
!! TTTTTGGTCAAGTAGCCTAG+TGG + chr3_4:53407438-53407457 Msa0506750:intron 40.0%
TAAGGTGAATTCTAGCCACT+AGG - chr3_4:53407456-53407475 None:intergenic 40.0%
CCCCACTTATTCACCTTATA+AGG - chr3_4:53407474-53407493 None:intergenic 40.0%
TCTCTGCTCATTCACTAATG+GGG - chr3_4:53407677-53407696 None:intergenic 40.0%
CTCTCTGCTCATTCACTAAT+GGG - chr3_4:53407678-53407697 None:intergenic 40.0%
TCTCTCTGCTCATTCACTAA+TGG - chr3_4:53407679-53407698 None:intergenic 40.0%
TAGACCGTAGAGAGAAAAAG+AGG + chr3_4:53407737-53407756 Msa0506750:intron 40.0%
AGAGAGAAAAAGAGGAAGTG+TGG + chr3_4:53407745-53407764 Msa0506750:intron 40.0%
! GAGAGAAAAAGAGGAAGTGT+GGG + chr3_4:53407746-53407765 Msa0506750:intron 40.0%
CAAAACCCTAGAACAGAAAG+CGG + chr3_4:53407837-53407856 Msa0506750:intron 40.0%
GTGTTTCACTTGCAGAAACT+GGG - chr3_4:53407962-53407981 None:intergenic 40.0%
CCTGCTATACATGGTCATTT+GGG + chr3_4:53408034-53408053 Msa0506750:intron 40.0%
!! GGCTGTTTTCATATCGTATC+GGG + chr3_4:53408085-53408104 Msa0506750:intron 40.0%
ATACGTATCGTGGGATACAT+GGG + chr3_4:53408108-53408127 Msa0506750:intron 40.0%
AAAATCGACGTGTAAGGTGA+GGG - chr3_4:53408209-53408228 None:intergenic 40.0%
CCTTACAAAATCGACGTGTA+AGG - chr3_4:53408215-53408234 None:intergenic 40.0%
!!! CCTTACACGTCGATTTTGTA+AGG + chr3_4:53408212-53408231 Msa0506750:intron 40.0%
!! TCATACTTAGATGGGCTGAT+GGG - chr3_4:53408332-53408351 None:intergenic 40.0%
!! TTCATACTTAGATGGGCTGA+TGG - chr3_4:53408333-53408352 None:intergenic 40.0%
ATCAGCCCATCTAAGTATGA+AGG + chr3_4:53408332-53408351 Msa0506750:intron 40.0%
AGACACGACAACTAGAGAAA+AGG + chr3_4:53408367-53408386 Msa0506750:intron 40.0%
GACACGACAACTAGAGAAAA+GGG + chr3_4:53408368-53408387 Msa0506750:intron 40.0%
!! GAGCCGTTAATGTTGATTTC+TGG + chr3_4:53408507-53408526 Msa0506750:CDS 40.0%
AGTTGATTACCTCTTCCCAT+TGG - chr3_4:53408620-53408639 None:intergenic 40.0%
GGTTCAAGCAACTATTCATC+AGG + chr3_4:53408712-53408731 Msa0506750:intron 40.0%
! TCTAGGACAGGTGATATTCA+AGG + chr3_4:53408800-53408819 Msa0506750:CDS 40.0%
CTAGGACAGGTGATATTCAA+GGG + chr3_4:53408801-53408820 Msa0506750:CDS 40.0%
!! CGAGCTATCAACTGATTTTC+TGG - chr3_4:53408837-53408856 None:intergenic 40.0%
GAAGACTGCAAAAATGTCAC+AGG - chr3_4:53408890-53408909 None:intergenic 40.0%
GACCTTGGGTAATATTTGAG+CGG - chr3_4:53408921-53408940 None:intergenic 40.0%
!! TACCCAAGGTCATTTTGGAA+TGG + chr3_4:53408930-53408949 Msa0506750:intron 40.0%
AGCCATTCCAAAATGACCTT+GGG - chr3_4:53408935-53408954 None:intergenic 40.0%
AAGCCATTCCAAAATGACCT+TGG - chr3_4:53408936-53408955 None:intergenic 40.0%
AGATTTGCAGGAGAAGCTTA+TGG + chr3_4:53409071-53409090 Msa0506750:CDS 40.0%
ATGAGAAGAAGTTAGGAGGA+AGG + chr3_4:53409121-53409140 Msa0506750:CDS 40.0%
TGAGAAGAAGTTAGGAGGAA+GGG + chr3_4:53409122-53409141 Msa0506750:CDS 40.0%
!!! TTAGCGATACTTGTTTTGCG+TGG + chr3_4:53409338-53409357 Msa0506750:three_prime_UTR 40.0%
!!! TAGCGATACTTGTTTTGCGT+GGG + chr3_4:53409339-53409358 Msa0506750:three_prime_UTR 40.0%
GCAAATCTGCTGCAATTACC+GGG + chr3_4:53403223-53403242 Msa0506750:five_prime_UTR 45.0%
!!! TCAGTGAGAGCGTTTTGGTT+TGG + chr3_4:53403255-53403274 Msa0506750:five_prime_UTR 45.0%
ACTTACACGACGGTCAACTT+TGG - chr3_4:53403405-53403424 None:intergenic 45.0%
! GGGCATTGCCATTTGAACAA+AGG - chr3_4:53403734-53403753 None:intergenic 45.0%
TGTGTCCAGCCTAGCAATAT+GGG - chr3_4:53403756-53403775 None:intergenic 45.0%
ATGTGTCCAGCCTAGCAATA+TGG - chr3_4:53403757-53403776 None:intergenic 45.0%
TGAAGTTCCAGGTTTGAACC+CGG - chr3_4:53403784-53403803 None:intergenic 45.0%
ACAGACAACTGTGAAGTTCC+AGG - chr3_4:53403795-53403814 None:intergenic 45.0%
AGTTGCGAACATAGGCTTAG+AGG + chr3_4:53403910-53403929 Msa0506750:intron 45.0%
GGAAAGGCGAAATCATCTTC+TGG + chr3_4:53404263-53404282 Msa0506750:CDS 45.0%
GCGAAATCATCTTCTGGTGT+TGG + chr3_4:53404269-53404288 Msa0506750:CDS 45.0%
TTAGGGCGGACAACTTCATA+GGG - chr3_4:53404299-53404318 None:intergenic 45.0%
! TTTAGGGCGGACAACTTCAT+AGG - chr3_4:53404300-53404319 None:intergenic 45.0%
TTTACCTAAAGGCCTTGGGA+AGG + chr3_4:53404355-53404374 Msa0506750:CDS 45.0%
TTACCTAAAGGCCTTGGGAA+GGG + chr3_4:53404356-53404375 Msa0506750:CDS 45.0%
TCTTTCTCCTTATCCCGTGA+AGG + chr3_4:53404493-53404512 Msa0506750:CDS 45.0%
ATTGAGCGATTGGACCTTCA+CGG - chr3_4:53404510-53404529 None:intergenic 45.0%
TAGGACTCTATTCTTGCCTC+AGG - chr3_4:53404542-53404561 None:intergenic 45.0%
ATTGGCAGGTATGAGAATGG+AGG - chr3_4:53404629-53404648 None:intergenic 45.0%
AACTCTTTAGCAACGGCGAA+GGG - chr3_4:53404677-53404696 None:intergenic 45.0%
CCTCACCAACTCTTTAGCAA+CGG - chr3_4:53404684-53404703 None:intergenic 45.0%
!! CGTTGCTAAAGAGTTGGTGA+GGG + chr3_4:53404682-53404701 Msa0506750:CDS 45.0%
GGGAGATTGAGATATCCCAT+TGG + chr3_4:53404702-53404721 Msa0506750:CDS 45.0%
GATCTGTACATTGCCCCAAT+GGG - chr3_4:53404720-53404739 None:intergenic 45.0%
TGATCTGTACATTGCCCCAA+TGG - chr3_4:53404721-53404740 None:intergenic 45.0%
GCAGATGCACCTCTTACATA+TGG - chr3_4:53404894-53404913 None:intergenic 45.0%
! TAAGAGGTGCATCTGCCTTT+AGG + chr3_4:53404898-53404917 Msa0506750:CDS 45.0%
CAGAACTTGAGATCGAACCT+CGG + chr3_4:53405106-53405125 Msa0506750:CDS 45.0%
! GTTTTCCAGCCACCAAAAAG+TGG - chr3_4:53405135-53405154 None:intergenic 45.0%
AAGTGGCAACCCATATCCAA+TGG - chr3_4:53405166-53405185 None:intergenic 45.0%
CCAAACAAGAAGTCCTGAAG+TGG - chr3_4:53405183-53405202 None:intergenic 45.0%
CCACTTCAGGACTTCTTGTT+TGG + chr3_4:53405180-53405199 Msa0506750:CDS 45.0%
! GACTTCTTGTTTGGAGTCGA+TGG + chr3_4:53405189-53405208 Msa0506750:CDS 45.0%
AACCTGAAAGTTGCAAGCAC+CGG - chr3_4:53405585-53405604 None:intergenic 45.0%
!! TTTCAGGTTGTCTTGCCAGA+GGG + chr3_4:53405596-53405615 Msa0506750:intron 45.0%
TTCTTCTCTAGCACGACAAC+AGG - chr3_4:53405804-53405823 None:intergenic 45.0%
GGACACCTAATATGAGATGG+AGG - chr3_4:53405987-53406006 None:intergenic 45.0%
!!! GACACCTATTTTTGAGACGG+AGG + chr3_4:53406229-53406248 Msa0506750:intron 45.0%
ACTCCCTCCGTCTCAAAAAT+AGG - chr3_4:53406236-53406255 None:intergenic 45.0%
AAATCCAGCTAGTGCGTTGA+GGG - chr3_4:53406438-53406457 None:intergenic 45.0%
ACGCACTAGCTGGATTTGTA+AGG + chr3_4:53406441-53406460 Msa0506750:intron 45.0%
TAGGCTAGTACTACTGGGTT+GGG - chr3_4:53406553-53406572 None:intergenic 45.0%
AAGCCTAGGCTAGTACTACT+GGG - chr3_4:53406558-53406577 None:intergenic 45.0%
TAAGCCTAGGCTAGTACTAC+TGG - chr3_4:53406559-53406578 None:intergenic 45.0%
GTATGTGTTGGAAGCCGTAA+AGG + chr3_4:53406850-53406869 Msa0506750:intron 45.0%
GGAAGCCGTAAAGGAATAGA+AGG + chr3_4:53406859-53406878 Msa0506750:intron 45.0%
TGTAACCCATCAGCTATTGC+AGG - chr3_4:53406994-53407013 None:intergenic 45.0%
! CAAACACCCACGGTTTTCTT+GGG - chr3_4:53407026-53407045 None:intergenic 45.0%
CAAGAAAACCGTGGGTGTTT+GGG + chr3_4:53407025-53407044 Msa0506750:intron 45.0%
AAGAAAACCGTGGGTGTTTG+GGG + chr3_4:53407026-53407045 Msa0506750:intron 45.0%
TTATGGAACAGTCCTGGAAC+CGG - chr3_4:53407080-53407099 None:intergenic 45.0%
AGGGGGGATACTAACTATAC+TGG + chr3_4:53407221-53407240 Msa0506750:intron 45.0%
GGGGGGATACTAACTATACT+GGG + chr3_4:53407222-53407241 Msa0506750:intron 45.0%
ATTATTATATGCAGGGGCCG+GGG - chr3_4:53407512-53407531 None:intergenic 45.0%
CATTATTATATGCAGGGGCC+GGG - chr3_4:53407513-53407532 None:intergenic 45.0%
GCATTATTATATGCAGGGGC+CGG - chr3_4:53407514-53407533 None:intergenic 45.0%
! ACAAGAACGTGTGCAGCTTT+TGG + chr3_4:53407781-53407800 Msa0506750:intron 45.0%
! CAAGAACGTGTGCAGCTTTT+GGG + chr3_4:53407782-53407801 Msa0506750:intron 45.0%
GTCAACCGCTTTCTGTTCTA+GGG - chr3_4:53407845-53407864 None:intergenic 45.0%
ACATGGGTCGGTACTAGAAA+CGG - chr3_4:53407901-53407920 None:intergenic 45.0%
CGTGTTTCACTTGCAGAAAC+TGG - chr3_4:53407963-53407982 None:intergenic 45.0%
GCCTGCTATACATGGTCATT+TGG + chr3_4:53408033-53408052 Msa0506750:intron 45.0%
CCCAAATGACCATGTATAGC+AGG - chr3_4:53408037-53408056 None:intergenic 45.0%
CCATGGGCAAATACGTATCA+GGG - chr3_4:53408067-53408086 None:intergenic 45.0%
GATACGTATCGTGGGATACA+TGG + chr3_4:53408107-53408126 Msa0506750:intron 45.0%
TACGTATCGTGGGATACATG+GGG + chr3_4:53408109-53408128 Msa0506750:intron 45.0%
AAATCGACGTGTAAGGTGAG+GGG - chr3_4:53408208-53408227 None:intergenic 45.0%
CAAAATCGACGTGTAAGGTG+AGG - chr3_4:53408210-53408229 None:intergenic 45.0%
!! CATACTTAGATGGGCTGATG+GGG - chr3_4:53408331-53408350 None:intergenic 45.0%
! CAGGGTGGTTTGACTTTAGT+AGG + chr3_4:53408417-53408436 Msa0506750:intron 45.0%
TCAACCGTCTTTCTATGCTC+AGG + chr3_4:53408484-53408503 Msa0506750:CDS 45.0%
CAACCGTCTTTCTATGCTCA+GGG + chr3_4:53408485-53408504 Msa0506750:CDS 45.0%
TGCATGCATGTAGACAATGG+AGG - chr3_4:53408553-53408572 None:intergenic 45.0%
GTCTGCATGCATGTAGACAA+TGG - chr3_4:53408556-53408575 None:intergenic 45.0%
CATCGTTGCGTGATCTTTCT+AGG + chr3_4:53408783-53408802 Msa0506750:CDS 45.0%
!! TTGCGTGATCTTTCTAGGAC+AGG + chr3_4:53408788-53408807 Msa0506750:CDS 45.0%
CTCGTTGAAAGAGCTCACAA+AGG + chr3_4:53408853-53408872 Msa0506750:CDS 45.0%
GGTAATATTTGAGCGGCTTG+TGG - chr3_4:53408914-53408933 None:intergenic 45.0%
AGCCGCTCAAATATTACCCA+AGG + chr3_4:53408916-53408935 Msa0506750:CDS 45.0%
GGTGGAGGAAGTAATTGCTA+AGG + chr3_4:53409044-53409063 Msa0506750:intron 45.0%
TGCTAAGGAGAGAGATTTGC+AGG + chr3_4:53409059-53409078 Msa0506750:CDS 45.0%
!! AAACAAAAATAAAATAATTA+TGG - chr3_4:53409020-53409039 None:intergenic 5.0%
TCTCACTGAACCAGAGATCC+CGG - chr3_4:53403244-53403263 None:intergenic 50.0%
!!! CTGGTTCAGTGAGAGCGTTT+TGG + chr3_4:53403250-53403269 Msa0506750:five_prime_UTR 50.0%
TGGTAAGGATGAGATCGGAG+AGG - chr3_4:53403385-53403404 None:intergenic 50.0%
CACGACGGTCAACTTTGGTA+AGG - chr3_4:53403400-53403419 None:intergenic 50.0%
!! CCTTAAGAGTGGTAGTGGTG+CGG - chr3_4:53403593-53403612 None:intergenic 50.0%
GAGCACCTTAAGAGTGGTAG+TGG - chr3_4:53403598-53403617 None:intergenic 50.0%
TGTCCAGCCTAGCAATATGG+GGG - chr3_4:53403754-53403773 None:intergenic 50.0%
GTGTCCAGCCTAGCAATATG+GGG - chr3_4:53403755-53403774 None:intergenic 50.0%
CTAGGCTGGACACATTCATC+CGG + chr3_4:53403762-53403781 Msa0506750:intron 50.0%
TAGGCTGGACACATTCATCC+GGG + chr3_4:53403763-53403782 Msa0506750:intron 50.0%
CATTCATCCGGGTTCAAACC+TGG + chr3_4:53403774-53403793 Msa0506750:intron 50.0%
CATTCTCTACCTGCGACACA+AGG - chr3_4:53404148-53404167 None:intergenic 50.0%
TCAAACTTTCGCCCTTCCCA+AGG - chr3_4:53404370-53404389 None:intergenic 50.0%
GAAGGGCGAAAGTTTGACGT+TGG + chr3_4:53404373-53404392 Msa0506750:CDS 50.0%
GATTGGACCTTCACGGGATA+AGG - chr3_4:53404503-53404522 None:intergenic 50.0%
TTGAGCGATTGGACCTTCAC+GGG - chr3_4:53404509-53404528 None:intergenic 50.0%
CAACTCTTTAGCAACGGCGA+AGG - chr3_4:53404678-53404697 None:intergenic 50.0%
CTTCGCCGTTGCTAAAGAGT+TGG + chr3_4:53404676-53404695 Msa0506750:CDS 50.0%
!! CCGTTGCTAAAGAGTTGGTG+AGG + chr3_4:53404681-53404700 Msa0506750:CDS 50.0%
CTGCTGCAGACTTGACTATC+AGG + chr3_4:53404863-53404882 Msa0506750:intron 50.0%
TGCACCTCTTACATATGGCC+TGG - chr3_4:53404889-53404908 None:intergenic 50.0%
CTTGGCAGTAAGACGCCTAA+AGG - chr3_4:53404916-53404935 None:intergenic 50.0%
GTCACCCCACAAACTAGAAG+TGG - chr3_4:53404991-53405010 None:intergenic 50.0%
GTGGGGTGACTCAAAAAAGG+TGG + chr3_4:53405001-53405020 Msa0506750:intron 50.0%
!! GAACCTCGGTACCCACTTTT+TGG + chr3_4:53405120-53405139 Msa0506750:CDS 50.0%
! TGGATATGGGTTGCCACTTC+AGG + chr3_4:53405167-53405186 Msa0506750:CDS 50.0%
!! CTTTCAGGTTGTCTTGCCAG+AGG + chr3_4:53405595-53405614 Msa0506750:intron 50.0%
CAAATCCAGCTAGTGCGTTG+AGG - chr3_4:53406439-53406458 None:intergenic 50.0%
!! CTTTTGGTGGGTGACTCGAA+TGG - chr3_4:53406521-53406540 None:intergenic 50.0%
CATTCGAGTCACCCACCAAA+AGG + chr3_4:53406519-53406538 Msa0506750:intron 50.0%
CTAGGCTAGTACTACTGGGT+TGG - chr3_4:53406554-53406573 None:intergenic 50.0%
! CAACCCAGTAGTACTAGCCT+AGG + chr3_4:53406552-53406571 Msa0506750:intron 50.0%
GTTCGCCTGCAATAGCTGAT+GGG + chr3_4:53406986-53407005 Msa0506750:intron 50.0%
AACCTGACCCAAGAAAACCG+TGG + chr3_4:53407016-53407035 Msa0506750:intron 50.0%
ACCTGACCCAAGAAAACCGT+GGG + chr3_4:53407017-53407036 Msa0506750:intron 50.0%
! CCAAACACCCACGGTTTTCT+TGG - chr3_4:53407027-53407046 None:intergenic 50.0%
CCAAGAAAACCGTGGGTGTT+TGG + chr3_4:53407024-53407043 Msa0506750:intron 50.0%
CAGAAAACCCCAAACACCCA+CGG - chr3_4:53407036-53407055 None:intergenic 50.0%
!! GGTGTTTGGGGTTTTCTGGA+GGG + chr3_4:53407038-53407057 Msa0506750:intron 50.0%
TATGGAACAGTCCTGGAACC+GGG - chr3_4:53407079-53407098 None:intergenic 50.0%
TGGGATATGCATCGTGGGAT+AGG + chr3_4:53407201-53407220 Msa0506750:intron 50.0%
GGGATATGCATCGTGGGATA+GGG + chr3_4:53407202-53407221 Msa0506750:intron 50.0%
GGATATGCATCGTGGGATAG+GGG + chr3_4:53407203-53407222 Msa0506750:intron 50.0%
GATATGCATCGTGGGATAGG+GGG + chr3_4:53407204-53407223 Msa0506750:intron 50.0%
ATATGCATCGTGGGATAGGG+GGG + chr3_4:53407205-53407224 Msa0506750:intron 50.0%
! AGGTGAATAAGTGGGGTGTC+CGG + chr3_4:53407478-53407497 Msa0506750:intron 50.0%
TGAGCATAGCTCAGTTGGCA+GGG - chr3_4:53407542-53407561 None:intergenic 50.0%
GGGGCAGAACCCTTAGAATT+TGG - chr3_4:53407658-53407677 None:intergenic 50.0%
GAGCAGAGAGAAACAGAGCA+TGG + chr3_4:53407688-53407707 Msa0506750:intron 50.0%
GGTCAACCGCTTTCTGTTCT+AGG - chr3_4:53407846-53407865 None:intergenic 50.0%
! TTTGACGGGTCACACAATCC+CGG + chr3_4:53407874-53407893 Msa0506750:intron 50.0%
CATGGGTCGGTACTAGAAAC+GGG - chr3_4:53407900-53407919 None:intergenic 50.0%
TCACTTGCAGAAACTGGGTC+AGG - chr3_4:53407957-53407976 None:intergenic 50.0%
TGGGATACGCCTGCTATACA+TGG + chr3_4:53408025-53408044 Msa0506750:intron 50.0%
CCCTGATACGTATTTGCCCA+TGG + chr3_4:53408064-53408083 Msa0506750:intron 50.0%
GCCATGGGCAAATACGTATC+AGG - chr3_4:53408068-53408087 None:intergenic 50.0%
TCGTATCGGGATACGTATCG+TGG + chr3_4:53408098-53408117 Msa0506750:intron 50.0%
CGTATCGGGATACGTATCGT+GGG + chr3_4:53408099-53408118 Msa0506750:intron 50.0%
TACTCTTGCGCCTGTATTGC+AGG + chr3_4:53408449-53408468 Msa0506750:CDS 50.0%
GCTCCCTGAGCATAGAAAGA+CGG - chr3_4:53408491-53408510 None:intergenic 50.0%
GGCAAAGATCCAATGGGAAG+AGG + chr3_4:53408608-53408627 Msa0506750:CDS 50.0%
GCTGCAATTACCGGGATCTC+TGG + chr3_4:53403231-53403250 Msa0506750:five_prime_UTR 55.0%
GAGGACCTGGGAGGATAGAA+TGG - chr3_4:53403366-53403385 None:intergenic 55.0%
GATGAGATCGGAGAGGACCT+GGG - chr3_4:53403378-53403397 None:intergenic 55.0%
CCGCACCACTACCACTCTTA+AGG + chr3_4:53403590-53403609 Msa0506750:CDS 55.0%
GGCAATGCCCCCATATTGCT+AGG + chr3_4:53403744-53403763 Msa0506750:intron 55.0%
ATGCCCCCATATTGCTAGGC+TGG + chr3_4:53403748-53403767 Msa0506750:intron 55.0%
GTGTCGCAGGTAGAGAATGC+AGG + chr3_4:53404149-53404168 Msa0506750:intron 55.0%
GCAGACTTGACTATCAGGCC+AGG + chr3_4:53404868-53404887 Msa0506750:intron 55.0%
CAGGCCAGGCCATATGTAAG+AGG + chr3_4:53404882-53404901 Msa0506750:CDS 55.0%
! ATGAGCTCTTGGTGGCAGCT+TGG - chr3_4:53404934-53404953 None:intergenic 55.0%
! CCACCAAAAAGTGGGTACCG+AGG - chr3_4:53405126-53405145 None:intergenic 55.0%
!!! CCTCGGTACCCACTTTTTGG+TGG + chr3_4:53405123-53405142 Msa0506750:CDS 55.0%
!!! GGTACCCACTTTTTGGTGGC+TGG + chr3_4:53405127-53405146 Msa0506750:CDS 55.0%
TGCCGGTGCTTGCAACTTTC+AGG + chr3_4:53405580-53405599 Msa0506750:intron 55.0%
! GGGTGCATGGACCTTTTGGT+GGG - chr3_4:53406533-53406552 None:intergenic 55.0%
! TGGGTGCATGGACCTTTTGG+TGG - chr3_4:53406534-53406553 None:intergenic 55.0%
! GGTTGGGTGCATGGACCTTT+TGG - chr3_4:53406537-53406556 None:intergenic 55.0%
! GTACTACTGGGTTGGGTGCA+TGG - chr3_4:53406546-53406565 None:intergenic 55.0%
GGTTCGCCTGCAATAGCTGA+TGG + chr3_4:53406985-53407004 Msa0506750:intron 55.0%
! ACCCACGGTTTTCTTGGGTC+AGG - chr3_4:53407021-53407040 None:intergenic 55.0%
!! CGTGGGTGTTTGGGGTTTTC+TGG + chr3_4:53407034-53407053 Msa0506750:intron 55.0%
!! GGGTGTTTGGGGTTTTCTGG+AGG + chr3_4:53407037-53407056 Msa0506750:intron 55.0%
! GGTGAATAAGTGGGGTGTCC+GGG + chr3_4:53407479-53407498 Msa0506750:intron 55.0%
! GTGAATAAGTGGGGTGTCCG+GGG + chr3_4:53407480-53407499 Msa0506750:intron 55.0%
GTGAGCATAGCTCAGTTGGC+AGG - chr3_4:53407543-53407562 None:intergenic 55.0%
CCTCGTGAGCATAGCTCAGT+TGG - chr3_4:53407547-53407566 None:intergenic 55.0%
CCAACTGAGCTATGCTCACG+AGG + chr3_4:53407544-53407563 Msa0506750:intron 55.0%
! AGAAACTGGGTCAGGTTGCG+CGG - chr3_4:53407949-53407968 None:intergenic 55.0%
!! CTTAGATGGGCTGATGGGGT+TGG - chr3_4:53408327-53408346 None:intergenic 55.0%
GGATGAGATCGGAGAGGACC+TGG - chr3_4:53403379-53403398 None:intergenic 60.0%
TCGCCCTTCCCAAGGCCTTT+AGG - chr3_4:53404362-53404381 None:intergenic 60.0%
CATGGCGGTGCTCAGAGCAA+AGG + chr3_4:53404761-53404780 Msa0506750:CDS 60.0%
GCATCCCTCAACGCACTAGC+TGG + chr3_4:53406431-53406450 Msa0506750:intron 60.0%
GGTGGGTGACTCGAATGGAC+AGG - chr3_4:53406516-53406535 None:intergenic 60.0%
GGGTCATGCAAAACCCGACC+CGG + chr3_4:53407058-53407077 Msa0506750:intron 60.0%
AACAGTCCTGGAACCGGGTC+GGG - chr3_4:53407074-53407093 None:intergenic 60.0%
GAACAGTCCTGGAACCGGGT+CGG - chr3_4:53407075-53407094 None:intergenic 60.0%
GTCGGTACTAGAAACGGGCC+GGG - chr3_4:53407895-53407914 None:intergenic 60.0%
GGTCGGTACTAGAAACGGGC+CGG - chr3_4:53407896-53407915 None:intergenic 60.0%
GAGATCGGAGAGGACCTGGG+AGG - chr3_4:53403375-53403394 None:intergenic 65.0%
GCAAAACCCGACCCGGTTCC+AGG + chr3_4:53407065-53407084 Msa0506750:intron 65.0%
GGTGTCCGGGGTTCGAACCC+CGG + chr3_4:53407492-53407511 Msa0506750:intron 70.0%
! CTGGGTCAGGTTGCGCGGTC+CGG - chr3_4:53407944-53407963 None:intergenic 70.0%
AGGGGCCGGGGTTCGAACCC+CGG - chr3_4:53407500-53407519 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 53403145 53409561 53403145 ID=Msa0506750;Name=Msa0506750
chr3_4 mRNA 53403145 53409561 53403145 ID=Msa0506750-mRNA-1;Parent=Msa0506750;Name=Msa0506750-mRNA-1;_AED=0.05;_eAED=0.05;_QI=166|0.77|0.7|1|1|1|10|325|633
chr3_4 exon 53403145 53403418 53403145 ID=Msa0506750-mRNA-1:exon:11827;Parent=Msa0506750-mRNA-1
chr3_4 exon 53403567 53403611 53403567 ID=Msa0506750-mRNA-1:exon:11828;Parent=Msa0506750-mRNA-1
chr3_4 exon 53404158 53404795 53404158 ID=Msa0506750-mRNA-1:exon:11829;Parent=Msa0506750-mRNA-1
chr3_4 exon 53404872 53405019 53404872 ID=Msa0506750-mRNA-1:exon:11830;Parent=Msa0506750-mRNA-1
chr3_4 exon 53405105 53405281 53405105 ID=Msa0506750-mRNA-1:exon:11831;Parent=Msa0506750-mRNA-1
chr3_4 exon 53405602 53405670 53405602 ID=Msa0506750-mRNA-1:exon:11832;Parent=Msa0506750-mRNA-1
chr3_4 exon 53405768 53405857 53405768 ID=Msa0506750-mRNA-1:exon:11833;Parent=Msa0506750-mRNA-1
chr3_4 exon 53408420 53408629 53408420 ID=Msa0506750-mRNA-1:exon:11834;Parent=Msa0506750-mRNA-1
chr3_4 exon 53408713 53408937 53408713 ID=Msa0506750-mRNA-1:exon:11835;Parent=Msa0506750-mRNA-1
chr3_4 exon 53409045 53409561 53409045 ID=Msa0506750-mRNA-1:exon:11836;Parent=Msa0506750-mRNA-1
chr3_4 five_prime_UTR 53403145 53403310 53403145 ID=Msa0506750-mRNA-1:five_prime_utr;Parent=Msa0506750-mRNA-1
chr3_4 CDS 53403311 53403418 53403311 ID=Msa0506750-mRNA-1:cds;Parent=Msa0506750-mRNA-1
chr3_4 CDS 53403567 53403611 53403567 ID=Msa0506750-mRNA-1:cds;Parent=Msa0506750-mRNA-1
chr3_4 CDS 53404158 53404795 53404158 ID=Msa0506750-mRNA-1:cds;Parent=Msa0506750-mRNA-1
chr3_4 CDS 53404872 53405019 53404872 ID=Msa0506750-mRNA-1:cds;Parent=Msa0506750-mRNA-1
chr3_4 CDS 53405105 53405281 53405105 ID=Msa0506750-mRNA-1:cds;Parent=Msa0506750-mRNA-1
chr3_4 CDS 53405602 53405670 53405602 ID=Msa0506750-mRNA-1:cds;Parent=Msa0506750-mRNA-1
chr3_4 CDS 53405768 53405857 53405768 ID=Msa0506750-mRNA-1:cds;Parent=Msa0506750-mRNA-1
chr3_4 CDS 53408420 53408629 53408420 ID=Msa0506750-mRNA-1:cds;Parent=Msa0506750-mRNA-1
chr3_4 CDS 53408713 53408937 53408713 ID=Msa0506750-mRNA-1:cds;Parent=Msa0506750-mRNA-1
chr3_4 CDS 53409045 53409236 53409045 ID=Msa0506750-mRNA-1:cds;Parent=Msa0506750-mRNA-1
chr3_4 three_prime_UTR 53409237 53409561 53409237 ID=Msa0506750-mRNA-1:three_prime_utr;Parent=Msa0506750-mRNA-1
Gene Sequence

>Msa0506750

ATGATGACGATGATGAGGTTGAATCTGCTTCTTTCGTTTGTATTCACATTTACCATTCTATCCTCCCAGGTCCTCTCCGATCTCATCCTTACCAAAGTTGACCGTCGTATTGATCTGTCATCACAAATTGTCCGCACCACTACCACTCTTAAGGTAGAGAATGCAGGATCTGATGTTGTTTCAGAAATCTTGTTGACCTTTCCTGATAACCATGTAAAGCACTTAGCATACATGTCAGCAACACTTAACGAAGGAAAGGGAAAGGCGAAATCATCTTCTGGTGTTGGTTTACCCTATGAAGTTGTCCGCCCTAAAGATATTCCCTCTTCCTTGGCAACTTATTCTGTAACTTTACCTAAAGGCCTTGGGAAGGGCGAAAGTTTGACGTTGGACATCTTGACAGTTTTTACCCATATATTGCAACCATTTCCAGAGAAAATTACGCAAGCTGACATTCAACTTCTGCTGTTTCAAGATAGTGCACAATATCTTTCTCCTTATCCCGTGAAGGTCCAATCGCTCAATGTTAAATTACCTGAGGCAAGAATAGAGTCCTACACAAAGCTGGAAAATACAAAACTTCAGGGATCTGAATTGAAATATGGTCCATATGAGAATCTTCCTCCATTCTCATACCTGCCAATTGTTATCCATTTTGAGAATAATCAGCCCTTCGCCGTTGCTAAAGAGTTGGTGAGGGAGATTGAGATATCCCATTGGGGCAATGTACAGATCACAGAGCATTATAATCTTGTTCATGGCGGTGCTCAGAGCAAAGGAGAATTTTCCAGACTTGACTATCAGGCCAGGCCATATGTAAGAGGTGCATCTGCCTTTAGGCGTCTTACTGCCAAGCTGCCACCAAGAGCTCATTCTGTTTACTACAGGGATGAAATCGGCAATATTTCCACTTCTAGTTTGTGGGGTGACTCAAAAAAGACAGAACTTGAGATCGAACCTCGGTACCCACTTTTTGGTGGCTGGAAAACTGCTTTTACCATTGGATATGGGTTGCCACTTCAGGACTTCTTGTTTGGAGTCGATGGAAAGCGCTTCCTTAATATCTCTTTTGGTTCCCCCATTAATGATTTGGTGATTGACACTCTTGTTGTGAAGGTTGTCTTGCCAGAGGGTTCAAAAGATATTTCACCATCTGTTCCATTTCCTGTGAAAGAAAGACATGAGACAAAGTTTTCACACTTGGATATTGCTGGTAGACCTGTTGTCGTGCTAGAGAAGAACAACGCTGTGCCTGAGCATAATGAGCATTTTCAGGGTGGTTTGACTTTAGTAGGTCTACTGATTACTCTTGCGCCTGTATTGCAGGTCTATTATAAGTTCAACCGTCTTTCTATGCTCAGGGAGCCGTTAATGTTGATTTCTGGCTTTTTCTTTCTATTTCTTGCCTCCATTGTCTACATGCATGCAGACTTATCGATCTCCAAGACTTCTGCATCTTATTTGGCAAAGATCCAATGGGAAGAGGTTCAAGCAACTATTCATCAGGTCCATAGTATCATTAGTCGTTGCTTAACAACACACGACAAGCTAGAAGCATCGTTGCGTGATCTTTCTAGGACAGGTGATATTCAAGGGTGTAAAGCAACCAGAAAATCAGTTGATAGCTCGTTGAAAGAGCTCACAAAGGAGTTGAAATCACCTGTGACATTTTTGCAGTCTTCTCCACAAGCCGCTCAAATATTACCCAAGGTGGAGGAAGTAATTGCTAAGGAGAGAGATTTGCAGGAGAAGCTTATGGCAAAACACACTACTGTTGTTGATTGTTATGAGAAGAAGTTAGGAGGAAGGGAAATTGAAAATCGGATTGCTTCACATCAGCAGAAAATTACATCTCTGAAACAAGAGATTTATGATCTTATGGACTTGATCGATGAGATATGA

Protein sequence

>Msa0506750

MMTMMRLNLLLSFVFTFTILSSQVLSDLILTKVDRRIDLSSQIVRTTTTLKVENAGSDVVSEILLTFPDNHVKHLAYMSATLNEGKGKAKSSSGVGLPYEVVRPKDIPSSLATYSVTLPKGLGKGESLTLDILTVFTHILQPFPEKITQADIQLLLFQDSAQYLSPYPVKVQSLNVKLPEARIESYTKLENTKLQGSELKYGPYENLPPFSYLPIVIHFENNQPFAVAKELVREIEISHWGNVQITEHYNLVHGGAQSKGEFSRLDYQARPYVRGASAFRRLTAKLPPRAHSVYYRDEIGNISTSSLWGDSKKTELEIEPRYPLFGGWKTAFTIGYGLPLQDFLFGVDGKRFLNISFGSPINDLVIDTLVVKVVLPEGSKDISPSVPFPVKERHETKFSHLDIAGRPVVVLEKNNAVPEHNEHFQGGLTLVGLLITLAPVLQVYYKFNRLSMLREPLMLISGFFFLFLASIVYMHADLSISKTSASYLAKIQWEEVQATIHQVHSIISRCLTTHDKLEASLRDLSRTGDIQGCKATRKSVDSSLKELTKELKSPVTFLQSSPQAAQILPKVEEVIAKERDLQEKLMAKHTTVVDCYEKKLGGREIENRIASHQQKITSLKQEIYDLMDLIDEI*