AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0646430


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0646430 MtrunA17_Chr4g0034821 96.013 301 12 0 1 301 1 301 0.0 611
Msa0646430 MtrunA17_Chr3g0144451 68.000 275 77 1 27 301 22 285 7.93e-136 385
Msa0646430 MtrunA17_Chr3g0138231 70.683 249 71 1 55 301 28 276 1.14e-130 372
Msa0646430 MtrunA17_Chr3g0144421 46.909 275 143 2 19 291 29 302 4.13e-92 275
Msa0646430 MtrunA17_Chr3g0144391 46.460 226 118 1 66 291 283 505 1.19e-69 224
Msa0646430 MtrunA17_Chr4g0034451 43.096 239 131 3 55 291 291 526 7.39e-68 220
Msa0646430 MtrunA17_Chr3g0144411 44.690 226 122 1 66 291 316 538 9.46e-67 218
Msa0646430 MtrunA17_Chr4g0034731 43.478 230 125 4 64 291 206 432 2.12e-66 214
Msa0646430 MtrunA17_Chr4g0034721 46.119 219 113 4 75 291 361 576 4.68e-64 211
Msa0646430 MtrunA17_Chr4g0034691 43.836 219 118 3 75 291 493 708 1.86e-60 204
Msa0646430 MtrunA17_Chr1g0147271 41.850 227 127 4 67 292 163 385 1.29e-59 195
Msa0646430 MtrunA17_Chr3g0139431 43.668 229 121 5 67 292 99 322 1.16e-58 190
Msa0646430 MtrunA17_Chr1g0147301 41.667 228 127 5 67 292 62 285 1.01e-56 184
Msa0646430 MtrunA17_Chr6g0485051 44.019 209 111 4 87 292 1 206 7.41e-56 179
Msa0646430 MtrunA17_Chr1g0147291 40.529 227 127 5 67 292 48 267 4.00e-55 179
Msa0646430 MtrunA17_Chr1g0147321 40.179 224 126 5 67 289 19 235 2.68e-54 177
Msa0646430 MtrunA17_Chr1g0146631 41.410 227 126 4 67 292 105 325 3.59e-54 179
Msa0646430 MtrunA17_Chr1g0147311 41.071 224 126 5 71 292 137 356 1.44e-53 178
Msa0646430 MtrunA17_Chr1g0147331 40.969 227 127 4 67 292 105 325 2.69e-53 177
Msa0646430 MtrunA17_Chr1g0147241 39.823 226 130 4 67 292 94 313 1.26e-51 172
Msa0646430 MtrunA17_Chr1g0147261 38.739 222 130 4 71 292 85 300 1.87e-50 169
Msa0646430 MtrunA17_Chr1g0147251 37.826 230 130 5 63 292 27 243 2.48e-49 164
Msa0646430 MtrunA17_Chr8g0365361 33.484 221 132 7 75 289 181 392 1.24e-33 127
Msa0646430 MtrunA17_Chr8g0365381 33.032 221 133 7 75 289 429 640 5.18e-31 122
Msa0646430 MtrunA17_Chr8g0365401 33.333 222 133 7 75 290 412 624 1.00e-30 121
Msa0646430 MtrunA17_Chr5g0413591 32.301 226 130 7 75 290 415 627 4.21e-29 116
Msa0646430 MtrunA17_Chr3g0117791 31.416 226 132 7 75 290 413 625 5.99e-26 107
Msa0646430 MtrunA17_Chr4g0034051 50.633 79 37 2 215 291 1 79 6.58e-23 90.5
Msa0646430 MtrunA17_Chr4g0076231 30.573 157 104 3 135 289 3 156 3.62e-22 90.9
Msa0646430 MtrunA17_Chr8g0355311 34.868 152 89 5 144 295 53 194 1.60e-19 84.7
Msa0646430 MtrunA17_Chr8g0355861 33.987 153 91 4 144 296 123 265 3.79e-18 82.4
Msa0646430 MtrunA17_Chr5g0412991 28.959 221 144 6 74 289 196 408 3.99e-18 84.0
Msa0646430 MtrunA17_Chr5g0412991 27.586 174 107 5 112 273 18 184 7.83e-13 68.6
Msa0646430 MtrunA17_Chr5g0412981 28.959 221 144 6 74 289 196 408 4.10e-18 84.0
Msa0646430 MtrunA17_Chr5g0412981 27.586 174 107 5 112 273 18 184 1.41e-13 70.5
Msa0646430 MtrunA17_Chr8g0355871 35.811 148 85 6 144 291 85 222 5.82e-18 81.3
Msa0646430 MtrunA17_Chr2g0318901 34.028 144 85 6 150 293 128 261 1.11e-17 81.3
Msa0646430 MtrunA17_Chr2g0318871 29.730 222 120 9 75 293 73 261 1.16e-17 81.3
Msa0646430 MtrunA17_Chr8g0355321 34.043 141 83 5 151 291 172 302 8.41e-17 79.3
Msa0646430 MtrunA17_Chr5g0412951 27.368 190 119 5 112 289 25 207 8.43e-17 77.4
Msa0646430 MtrunA17_Chr8g0355331 34.043 141 83 5 151 291 291 421 1.62e-16 79.3
Msa0646430 MtrunA17_Chr8g0355841 34.483 145 85 6 151 295 379 513 1.39e-15 77.0
Msa0646430 MtrunA17_Chr1g0168781 31.126 151 89 5 144 291 121 259 1.64e-14 72.0
Msa0646430 MtrunA17_Chr8g0355831 33.784 148 88 5 144 291 214 351 7.26e-14 71.2
Msa0646430 MtrunA17_Chr8g0371951 38.095 84 47 3 200 280 6 87 1.63e-12 62.4
Msa0646430 MtrunA17_Chr2g0318931 30.345 145 89 6 151 293 138 272 9.47e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0646430 AT1G49320.1 45.415 229 120 2 69 292 52 280 2.75e-68 214
Msa0646430 AT5G25610.1 40.000 225 130 4 67 289 168 389 6.43e-51 172
Msa0646430 AT1G70370.2 33.628 226 127 6 75 290 411 623 2.53e-30 120
Msa0646430 AT1G70370.1 33.628 226 127 6 75 290 411 623 2.53e-30 120
Msa0646430 AT1G23760.1 32.353 204 120 5 92 290 429 619 6.45e-28 113
Msa0646430 AT1G60390.1 30.222 225 134 7 75 289 409 620 3.73e-26 108

Find 72 sgRNAs with CRISPR-Local

Find 168 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACACCCTGAACTTCCAATTT+TGG 0.159002 4_3:+52204376 None:intergenic
TTTCATATGGGTTCCAAAAT+TGG 0.163908 4_3:-52204389 Msa0646430:CDS
CATGTTTCATTTCAGGTTCT+TGG 0.168453 4_3:-52204460 Msa0646430:CDS
ACATGGTCATGTTTCATTTC+AGG 0.187970 4_3:-52204467 Msa0646430:CDS
GGAAGTTTGTTCAAAGAAAA+AGG 0.203933 4_3:+52204913 None:intergenic
GATTTCACTCAAACCATTCT+TGG 0.227601 4_3:-52204754 Msa0646430:CDS
GTTTCACTTGTTGGTGATAA+TGG 0.231201 4_3:-52204541 Msa0646430:CDS
TATTCTCACTTTCTTGACTA+TGG 0.275068 4_3:+52204575 None:intergenic
CTTCAATTTCCCCTAAGTTT+TGG 0.302168 4_3:-52204960 Msa0646430:CDS
GAATTTCACTTCTCCTTTGA+TGG 0.307340 4_3:+52204804 None:intergenic
GGAAATTGAAGGGTCTCTTT+TGG 0.307777 4_3:+52204972 None:intergenic
TTTCACTTGTTGGTGATAAT+GGG 0.318089 4_3:-52204540 Msa0646430:CDS
CTGAAAAGTGACACTTGATT+TGG 0.319135 4_3:+52204690 None:intergenic
TGTTGGTGATAATGGGGATT+TGG 0.320872 4_3:-52204533 Msa0646430:CDS
TGATATGATCATGTAGATTT+AGG 0.322595 4_3:-52205444 Msa0646430:five_prime_UTR
GGTTCCAAAATTGGAAGTTC+AGG 0.332466 4_3:-52204380 Msa0646430:CDS
CTTTGGCTTGTGGAGAGTCT+TGG 0.342138 4_3:+52204863 None:intergenic
TTCCAGCTGATAATTTCATA+TGG 0.349895 4_3:-52204402 Msa0646430:CDS
GTGTGACATGCCACCATCTT+TGG 0.354478 4_3:+52204628 None:intergenic
TCATATGGATACTTCTCATT+GGG 0.365983 4_3:-52204491 Msa0646430:CDS
TTGTCTCTTGGCCAAAACTT+AGG 0.371649 4_3:+52204949 None:intergenic
TAAATCTACATGATCATATC+AGG 0.372629 4_3:+52205446 None:intergenic
AAGGGTATCTACCATTGCTT+TGG 0.378961 4_3:+52204846 None:intergenic
TGTCTCTTGGCCAAAACTTA+GGG 0.382523 4_3:+52204950 None:intergenic
CAGGTTCTTGGTGTTGTGCC+AGG 0.389898 4_3:-52204448 Msa0646430:CDS
ATTTATTGAGAATAATGTAT+TGG 0.396779 4_3:-52204202 Msa0646430:three_prime_UTR
TTTGGCTTGTGGAGAGTCTT+GGG 0.402514 4_3:+52204864 None:intergenic
TCTACCATTGCTTTGGCTTG+TGG 0.404591 4_3:+52204853 None:intergenic
TGGCAATAGAAAACAGCATA+AGG 0.408624 4_3:+52204595 None:intergenic
ATATATAGAGTTTCACTTGT+TGG 0.415560 4_3:-52204550 Msa0646430:CDS
AATTTCACTTCTCCTTTGAT+GGG 0.416780 4_3:+52204805 None:intergenic
GTCATATGGATACTTCTCAT+TGG 0.421442 4_3:-52204492 Msa0646430:CDS
ACCTTGAAAGACTTAAAAGT+TGG 0.422790 4_3:-52205018 Msa0646430:CDS
AGTGAATCAGCTTTGTCTCT+TGG 0.424727 4_3:+52204937 None:intergenic
TCACATGGACCCTTCTGTTA+TGG 0.432901 4_3:-52205049 Msa0646430:CDS
AGCTATGGTTGTTTGTCATA+TGG 0.433565 4_3:-52204506 Msa0646430:CDS
GTTTGCTCTCACATTCTGTA+AGG 0.443520 4_3:+52204827 None:intergenic
AGGATCTCAGATATAAACTT+TGG 0.448641 4_3:+52205357 None:intergenic
TGGGGATTTGGTGGAAGCTA+TGG 0.459502 4_3:-52204521 Msa0646430:CDS
TCCAGCTGATAATTTCATAT+GGG 0.459838 4_3:-52204401 Msa0646430:CDS
TGACACACATTAGAACTTCC+TGG 0.463418 4_3:+52204430 None:intergenic
CCTTGAAAGACTTAAAAGTT+GGG 0.465337 4_3:-52205017 Msa0646430:CDS
TGGTGATAATGGGGATTTGG+TGG 0.472374 4_3:-52204530 Msa0646430:CDS
TGTTGAAATAAGTACTCTCC+TGG 0.484120 4_3:-52204276 Msa0646430:three_prime_UTR
CTATATTAGACAAGATTATG+AGG 0.485497 4_3:-52204660 Msa0646430:CDS
TGGAACAGAAAGCAAACTCT+TGG 0.493149 4_3:-52205142 Msa0646430:CDS
CAAAACTTAGGGGAAATTGA+AGG 0.500601 4_3:+52204961 None:intergenic
GGCAATAGAAAACAGCATAA+GGG 0.512658 4_3:+52204596 None:intergenic
ATAGTCAAGAAAGTGAGAAT+AGG 0.513839 4_3:-52204573 Msa0646430:CDS
GTTCCAAAATTGGAAGTTCA+GGG 0.515552 4_3:-52204379 Msa0646430:CDS
ACCCATATGAAATTATCAGC+TGG 0.518839 4_3:+52204400 None:intergenic
GAGGATTTCAGCTCCAAAGA+TGG 0.529926 4_3:-52204641 Msa0646430:CDS
TAGAAAACAGCATAAGGGTA+AGG 0.533811 4_3:+52204601 None:intergenic
TTTGCTCTCACATTCTGTAA+GGG 0.540182 4_3:+52204828 None:intergenic
TTCACTTGTTGGTGATAATG+GGG 0.549004 4_3:-52204539 Msa0646430:CDS
GATACTTCTCATTGGGGACA+TGG 0.551200 4_3:-52204484 Msa0646430:CDS
AGCAGAGCAAGAGAATTAGC+TGG 0.551256 4_3:-52205162 Msa0646430:CDS
GTACTAGTAGATGAAGAAAG+AGG 0.558137 4_3:+52205337 None:intergenic
AGAAACTCAAACATCAAACT+TGG 0.558625 4_3:+52204306 None:intergenic
GTCTCTTGGCCAAAACTTAG+GGG 0.574379 4_3:+52204951 None:intergenic
GTGAAGAACACCATAACAGA+AGG 0.585539 4_3:+52205039 None:intergenic
TGTGAGAGCAAACCCATCAA+AGG 0.590120 4_3:-52204817 Msa0646430:CDS
CTCTCCACAAGCCAAAGCAA+TGG 0.615953 4_3:-52204857 Msa0646430:CDS
AAAACTTAGGGGAAATTGAA+GGG 0.620878 4_3:+52204962 None:intergenic
ATCTCTGTCTTTCTACACAA+AGG 0.629482 4_3:-52205420 Msa0646430:five_prime_UTR
CATATGGATACTTCTCATTG+GGG 0.635326 4_3:-52204490 Msa0646430:CDS
GTTGAAATAAGTACTCTCCT+GGG 0.635439 4_3:-52204275 Msa0646430:three_prime_UTR
TGCACATAATCACAATCACA+TGG 0.646984 4_3:-52205064 Msa0646430:CDS
GATTTCAGCTCCAAAGATGG+TGG 0.658692 4_3:-52204638 Msa0646430:CDS
TGAAGAACACCATAACAGAA+GGG 0.675219 4_3:+52205040 None:intergenic
TCATCTACTAGTACTAATCA+CGG 0.682328 4_3:-52205328 Msa0646430:intron
TAGCATCATTACATGTACCC+AGG 0.694629 4_3:+52204258 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTTTTATAGTATTAAAAAAA+TGG - chr4_3:52205447-52205466 Msa0646430:five_prime_UTR 10.0%
!!! GTTTTATAGTATTAAAAAAA+TGG - chr4_3:52205447-52205466 Msa0646430:five_prime_UTR 10.0%
!!! TTTCTTTTAGCATATAATAT+TGG + chr4_3:52204130-52204149 None:intergenic 15.0%
!!! TCTATTTCTATATTCAAATA+TGG - chr4_3:52204345-52204364 Msa0646430:exon 15.0%
!!! AAATTTTTGCAGATTTTTTA+TGG - chr4_3:52204421-52204440 Msa0646430:CDS 15.0%
!! ATTTATTGAGAATAATGTAT+TGG - chr4_3:52205405-52205424 Msa0646430:five_prime_UTR 15.0%
!! TTGTATCATAAAGATAAAAT+GGG - chr4_3:52205490-52205509 Msa0646430:five_prime_UTR 15.0%
!!! TTTCTTTTAGCATATAATAT+TGG + chr4_3:52204130-52204149 None:intergenic 15.0%
!!! TCTATTTCTATATTCAAATA+TGG - chr4_3:52204345-52204364 Msa0646430:exon 15.0%
!!! AAATTTTTGCAGATTTTTTA+TGG - chr4_3:52204421-52204440 Msa0646430:CDS 15.0%
!! ATTTATTGAGAATAATGTAT+TGG - chr4_3:52205405-52205424 Msa0646430:five_prime_UTR 15.0%
!!! ATTTTTTTCTTTCCTTTTCT+TGG - chr4_3:52204319-52204338 Msa0646430:three_prime_UTR 20.0%
!! CTTGTATCATAAAGATAAAA+TGG - chr4_3:52205489-52205508 Msa0646430:five_prime_UTR 20.0%
!!! ATTTTTTTCTTTCCTTTTCT+TGG - chr4_3:52204319-52204338 Msa0646430:three_prime_UTR 20.0%
! TAAATCTACATGATCATATC+AGG + chr4_3:52204164-52204183 None:intergenic 25.0%
! TGATATGATCATGTAGATTT+AGG - chr4_3:52204163-52204182 Msa0646430:three_prime_UTR 25.0%
! ATCATTTGAAAAACCAAGAA+TGG + chr4_3:52204869-52204888 None:intergenic 25.0%
! CTATATTAGACAAGATTATG+AGG - chr4_3:52204947-52204966 Msa0646430:CDS 25.0%
! ATATATAGAGTTTCACTTGT+TGG - chr4_3:52205057-52205076 Msa0646430:CDS 25.0%
! TAAATCTACATGATCATATC+AGG + chr4_3:52204164-52204183 None:intergenic 25.0%
! TGATATGATCATGTAGATTT+AGG - chr4_3:52204163-52204182 Msa0646430:three_prime_UTR 25.0%
! ATCATTTGAAAAACCAAGAA+TGG + chr4_3:52204869-52204888 None:intergenic 25.0%
! CTATATTAGACAAGATTATG+AGG - chr4_3:52204947-52204966 Msa0646430:CDS 25.0%
! ATATATAGAGTTTCACTTGT+TGG - chr4_3:52205057-52205076 Msa0646430:CDS 25.0%
AGGATCTCAGATATAAACTT+TGG + chr4_3:52204253-52204272 None:intergenic 30.0%
TCATCTACTAGTACTAATCA+CGG - chr4_3:52204279-52204298 Msa0646430:three_prime_UTR 30.0%
AGAAATAGAGTTCCAAGAAA+AGG + chr4_3:52204334-52204353 None:intergenic 30.0%
ACCTTGAAAGACTTAAAAGT+TGG - chr4_3:52204589-52204608 Msa0646430:CDS 30.0%
CCTTGAAAGACTTAAAAGTT+GGG - chr4_3:52204590-52204609 Msa0646430:CDS 30.0%
AAAACTTAGGGGAAATTGAA+GGG + chr4_3:52204648-52204667 None:intergenic 30.0%
! GGAAGTTTGTTCAAAGAAAA+AGG + chr4_3:52204697-52204716 None:intergenic 30.0%
AATTTCACTTCTCCTTTGAT+GGG + chr4_3:52204805-52204824 None:intergenic 30.0%
TATTCTCACTTTCTTGACTA+TGG + chr4_3:52205035-52205054 None:intergenic 30.0%
ATAGTCAAGAAAGTGAGAAT+AGG - chr4_3:52205034-52205053 Msa0646430:CDS 30.0%
!! TTTCACTTGTTGGTGATAAT+GGG - chr4_3:52205067-52205086 Msa0646430:CDS 30.0%
TCATATGGATACTTCTCATT+GGG - chr4_3:52205116-52205135 Msa0646430:CDS 30.0%
TTCCAGCTGATAATTTCATA+TGG - chr4_3:52205205-52205224 Msa0646430:intron 30.0%
TCCAGCTGATAATTTCATAT+GGG - chr4_3:52205206-52205225 Msa0646430:intron 30.0%
TTTCATATGGGTTCCAAAAT+TGG - chr4_3:52205218-52205237 Msa0646430:intron 30.0%
AGAAACTCAAACATCAAACT+TGG + chr4_3:52205304-52205323 None:intergenic 30.0%
AGGATCTCAGATATAAACTT+TGG + chr4_3:52204253-52204272 None:intergenic 30.0%
TCATCTACTAGTACTAATCA+CGG - chr4_3:52204279-52204298 Msa0646430:three_prime_UTR 30.0%
AGAAATAGAGTTCCAAGAAA+AGG + chr4_3:52204334-52204353 None:intergenic 30.0%
ACCTTGAAAGACTTAAAAGT+TGG - chr4_3:52204589-52204608 Msa0646430:CDS 30.0%
CCTTGAAAGACTTAAAAGTT+GGG - chr4_3:52204590-52204609 Msa0646430:CDS 30.0%
AAAACTTAGGGGAAATTGAA+GGG + chr4_3:52204648-52204667 None:intergenic 30.0%
! GGAAGTTTGTTCAAAGAAAA+AGG + chr4_3:52204697-52204716 None:intergenic 30.0%
AATTTCACTTCTCCTTTGAT+GGG + chr4_3:52204805-52204824 None:intergenic 30.0%
TATTCTCACTTTCTTGACTA+TGG + chr4_3:52205035-52205054 None:intergenic 30.0%
ATAGTCAAGAAAGTGAGAAT+AGG - chr4_3:52205034-52205053 Msa0646430:CDS 30.0%
!! TTTCACTTGTTGGTGATAAT+GGG - chr4_3:52205067-52205086 Msa0646430:CDS 30.0%
TCATATGGATACTTCTCATT+GGG - chr4_3:52205116-52205135 Msa0646430:CDS 30.0%
TTCCAGCTGATAATTTCATA+TGG - chr4_3:52205205-52205224 Msa0646430:intron 30.0%
TCCAGCTGATAATTTCATAT+GGG - chr4_3:52205206-52205225 Msa0646430:intron 30.0%
TTTCATATGGGTTCCAAAAT+TGG - chr4_3:52205218-52205237 Msa0646430:intron 30.0%
AGAAACTCAAACATCAAACT+TGG + chr4_3:52205304-52205323 None:intergenic 30.0%
ATCTCTGTCTTTCTACACAA+AGG - chr4_3:52204187-52204206 Msa0646430:three_prime_UTR 35.0%
GTACTAGTAGATGAAGAAAG+AGG + chr4_3:52204273-52204292 None:intergenic 35.0%
! GAGCTTTGCAATTTAGAGTA+AGG + chr4_3:52204398-52204417 None:intergenic 35.0%
TGCACATAATCACAATCACA+TGG - chr4_3:52204543-52204562 Msa0646430:CDS 35.0%
TGAAGAACACCATAACAGAA+GGG + chr4_3:52204570-52204589 None:intergenic 35.0%
!! CCCAACTTTTAAGTCTTTCA+AGG + chr4_3:52204593-52204612 None:intergenic 35.0%
! GAAATTGAAGGGTCTCTTTT+GGG + chr4_3:52204637-52204656 None:intergenic 35.0%
CAAAACTTAGGGGAAATTGA+AGG + chr4_3:52204649-52204668 None:intergenic 35.0%
! CTTCAATTTCCCCTAAGTTT+TGG - chr4_3:52204647-52204666 Msa0646430:CDS 35.0%
!! GAGAAGATTTTGAGAAGAGT+TGG + chr4_3:52204718-52204737 None:intergenic 35.0%
TTTGCTCTCACATTCTGTAA+GGG + chr4_3:52204782-52204801 None:intergenic 35.0%
GAATTTCACTTCTCCTTTGA+TGG + chr4_3:52204806-52204825 None:intergenic 35.0%
GATTTCACTCAAACCATTCT+TGG - chr4_3:52204853-52204872 Msa0646430:CDS 35.0%
CTGAAAAGTGACACTTGATT+TGG + chr4_3:52204920-52204939 None:intergenic 35.0%
TAGAAAACAGCATAAGGGTA+AGG + chr4_3:52205009-52205028 None:intergenic 35.0%
GGCAATAGAAAACAGCATAA+GGG + chr4_3:52205014-52205033 None:intergenic 35.0%
TGGCAATAGAAAACAGCATA+AGG + chr4_3:52205015-52205034 None:intergenic 35.0%
!! GTTTCACTTGTTGGTGATAA+TGG - chr4_3:52205066-52205085 Msa0646430:CDS 35.0%
!! TTCACTTGTTGGTGATAATG+GGG - chr4_3:52205068-52205087 Msa0646430:CDS 35.0%
AGCTATGGTTGTTTGTCATA+TGG - chr4_3:52205101-52205120 Msa0646430:CDS 35.0%
GTCATATGGATACTTCTCAT+TGG - chr4_3:52205115-52205134 Msa0646430:CDS 35.0%
CATATGGATACTTCTCATTG+GGG - chr4_3:52205117-52205136 Msa0646430:CDS 35.0%
ACATGGTCATGTTTCATTTC+AGG - chr4_3:52205140-52205159 Msa0646430:CDS 35.0%
!! CATGTTTCATTTCAGGTTCT+TGG - chr4_3:52205147-52205166 Msa0646430:CDS 35.0%
ACCCATATGAAATTATCAGC+TGG + chr4_3:52205210-52205229 None:intergenic 35.0%
GTTCCAAAATTGGAAGTTCA+GGG - chr4_3:52205228-52205247 Msa0646430:intron 35.0%
TGTTGAAATAAGTACTCTCC+TGG - chr4_3:52205331-52205350 Msa0646430:CDS 35.0%
GTTGAAATAAGTACTCTCCT+GGG - chr4_3:52205332-52205351 Msa0646430:CDS 35.0%
ATCTCTGTCTTTCTACACAA+AGG - chr4_3:52204187-52204206 Msa0646430:three_prime_UTR 35.0%
GTACTAGTAGATGAAGAAAG+AGG + chr4_3:52204273-52204292 None:intergenic 35.0%
! GAGCTTTGCAATTTAGAGTA+AGG + chr4_3:52204398-52204417 None:intergenic 35.0%
TGCACATAATCACAATCACA+TGG - chr4_3:52204543-52204562 Msa0646430:CDS 35.0%
TGAAGAACACCATAACAGAA+GGG + chr4_3:52204570-52204589 None:intergenic 35.0%
!! CCCAACTTTTAAGTCTTTCA+AGG + chr4_3:52204593-52204612 None:intergenic 35.0%
! GAAATTGAAGGGTCTCTTTT+GGG + chr4_3:52204637-52204656 None:intergenic 35.0%
CAAAACTTAGGGGAAATTGA+AGG + chr4_3:52204649-52204668 None:intergenic 35.0%
! CTTCAATTTCCCCTAAGTTT+TGG - chr4_3:52204647-52204666 Msa0646430:CDS 35.0%
!! GAGAAGATTTTGAGAAGAGT+TGG + chr4_3:52204718-52204737 None:intergenic 35.0%
TTTGCTCTCACATTCTGTAA+GGG + chr4_3:52204782-52204801 None:intergenic 35.0%
GAATTTCACTTCTCCTTTGA+TGG + chr4_3:52204806-52204825 None:intergenic 35.0%
GATTTCACTCAAACCATTCT+TGG - chr4_3:52204853-52204872 Msa0646430:CDS 35.0%
CTGAAAAGTGACACTTGATT+TGG + chr4_3:52204920-52204939 None:intergenic 35.0%
TAGAAAACAGCATAAGGGTA+AGG + chr4_3:52205009-52205028 None:intergenic 35.0%
GGCAATAGAAAACAGCATAA+GGG + chr4_3:52205014-52205033 None:intergenic 35.0%
TGGCAATAGAAAACAGCATA+AGG + chr4_3:52205015-52205034 None:intergenic 35.0%
!! GTTTCACTTGTTGGTGATAA+TGG - chr4_3:52205066-52205085 Msa0646430:CDS 35.0%
!! TTCACTTGTTGGTGATAATG+GGG - chr4_3:52205068-52205087 Msa0646430:CDS 35.0%
AGCTATGGTTGTTTGTCATA+TGG - chr4_3:52205101-52205120 Msa0646430:CDS 35.0%
GTCATATGGATACTTCTCAT+TGG - chr4_3:52205115-52205134 Msa0646430:CDS 35.0%
CATATGGATACTTCTCATTG+GGG - chr4_3:52205117-52205136 Msa0646430:CDS 35.0%
ACATGGTCATGTTTCATTTC+AGG - chr4_3:52205140-52205159 Msa0646430:CDS 35.0%
!! CATGTTTCATTTCAGGTTCT+TGG - chr4_3:52205147-52205166 Msa0646430:CDS 35.0%
ACCCATATGAAATTATCAGC+TGG + chr4_3:52205210-52205229 None:intergenic 35.0%
GTTCCAAAATTGGAAGTTCA+GGG - chr4_3:52205228-52205247 Msa0646430:intron 35.0%
TGTTGAAATAAGTACTCTCC+TGG - chr4_3:52205331-52205350 Msa0646430:CDS 35.0%
GTTGAAATAAGTACTCTCCT+GGG - chr4_3:52205332-52205351 Msa0646430:CDS 35.0%
TGGAACAGAAAGCAAACTCT+TGG - chr4_3:52204465-52204484 Msa0646430:CDS 40.0%
GTGAAGAACACCATAACAGA+AGG + chr4_3:52204571-52204590 None:intergenic 40.0%
! GGAAATTGAAGGGTCTCTTT+TGG + chr4_3:52204638-52204657 None:intergenic 40.0%
TGTCTCTTGGCCAAAACTTA+GGG + chr4_3:52204660-52204679 None:intergenic 40.0%
TTGTCTCTTGGCCAAAACTT+AGG + chr4_3:52204661-52204680 None:intergenic 40.0%
! AGTGAATCAGCTTTGTCTCT+TGG + chr4_3:52204673-52204692 None:intergenic 40.0%
!! AAGGGTATCTACCATTGCTT+TGG + chr4_3:52204764-52204783 None:intergenic 40.0%
GTTTGCTCTCACATTCTGTA+AGG + chr4_3:52204783-52204802 None:intergenic 40.0%
!! TGTTGGTGATAATGGGGATT+TGG - chr4_3:52205074-52205093 Msa0646430:CDS 40.0%
TGACACACATTAGAACTTCC+TGG + chr4_3:52205180-52205199 None:intergenic 40.0%
GGTTCCAAAATTGGAAGTTC+AGG - chr4_3:52205227-52205246 Msa0646430:intron 40.0%
! ACACCCTGAACTTCCAATTT+TGG + chr4_3:52205234-52205253 None:intergenic 40.0%
TAGCATCATTACATGTACCC+AGG + chr4_3:52205352-52205371 None:intergenic 40.0%
TGGAACAGAAAGCAAACTCT+TGG - chr4_3:52204465-52204484 Msa0646430:CDS 40.0%
GTGAAGAACACCATAACAGA+AGG + chr4_3:52204571-52204590 None:intergenic 40.0%
! GGAAATTGAAGGGTCTCTTT+TGG + chr4_3:52204638-52204657 None:intergenic 40.0%
TGTCTCTTGGCCAAAACTTA+GGG + chr4_3:52204660-52204679 None:intergenic 40.0%
TTGTCTCTTGGCCAAAACTT+AGG + chr4_3:52204661-52204680 None:intergenic 40.0%
! AGTGAATCAGCTTTGTCTCT+TGG + chr4_3:52204673-52204692 None:intergenic 40.0%
!! AAGGGTATCTACCATTGCTT+TGG + chr4_3:52204764-52204783 None:intergenic 40.0%
GTTTGCTCTCACATTCTGTA+AGG + chr4_3:52204783-52204802 None:intergenic 40.0%
!! TGTTGGTGATAATGGGGATT+TGG - chr4_3:52205074-52205093 Msa0646430:CDS 40.0%
TGACACACATTAGAACTTCC+TGG + chr4_3:52205180-52205199 None:intergenic 40.0%
GGTTCCAAAATTGGAAGTTC+AGG - chr4_3:52205227-52205246 Msa0646430:intron 40.0%
! ACACCCTGAACTTCCAATTT+TGG + chr4_3:52205234-52205253 None:intergenic 40.0%
TAGCATCATTACATGTACCC+AGG + chr4_3:52205352-52205371 None:intergenic 40.0%
AGCAGAGCAAGAGAATTAGC+TGG - chr4_3:52204445-52204464 Msa0646430:CDS 45.0%
TCACATGGACCCTTCTGTTA+TGG - chr4_3:52204558-52204577 Msa0646430:CDS 45.0%
GTCTCTTGGCCAAAACTTAG+GGG + chr4_3:52204659-52204678 None:intergenic 45.0%
!! TTTGGCTTGTGGAGAGTCTT+GGG + chr4_3:52204746-52204765 None:intergenic 45.0%
!! TCTACCATTGCTTTGGCTTG+TGG + chr4_3:52204757-52204776 None:intergenic 45.0%
TGTGAGAGCAAACCCATCAA+AGG - chr4_3:52204790-52204809 Msa0646430:CDS 45.0%
GAGGATTTCAGCTCCAAAGA+TGG - chr4_3:52204966-52204985 Msa0646430:CDS 45.0%
GATTTCAGCTCCAAAGATGG+TGG - chr4_3:52204969-52204988 Msa0646430:CDS 45.0%
!! TGGTGATAATGGGGATTTGG+TGG - chr4_3:52205077-52205096 Msa0646430:CDS 45.0%
GATACTTCTCATTGGGGACA+TGG - chr4_3:52205123-52205142 Msa0646430:CDS 45.0%
AGCAGAGCAAGAGAATTAGC+TGG - chr4_3:52204445-52204464 Msa0646430:CDS 45.0%
TCACATGGACCCTTCTGTTA+TGG - chr4_3:52204558-52204577 Msa0646430:CDS 45.0%
GTCTCTTGGCCAAAACTTAG+GGG + chr4_3:52204659-52204678 None:intergenic 45.0%
!! TTTGGCTTGTGGAGAGTCTT+GGG + chr4_3:52204746-52204765 None:intergenic 45.0%
!! TCTACCATTGCTTTGGCTTG+TGG + chr4_3:52204757-52204776 None:intergenic 45.0%
TGTGAGAGCAAACCCATCAA+AGG - chr4_3:52204790-52204809 Msa0646430:CDS 45.0%
GAGGATTTCAGCTCCAAAGA+TGG - chr4_3:52204966-52204985 Msa0646430:CDS 45.0%
GATTTCAGCTCCAAAGATGG+TGG - chr4_3:52204969-52204988 Msa0646430:CDS 45.0%
!! TGGTGATAATGGGGATTTGG+TGG - chr4_3:52205077-52205096 Msa0646430:CDS 45.0%
GATACTTCTCATTGGGGACA+TGG - chr4_3:52205123-52205142 Msa0646430:CDS 45.0%
!! CTTTGGCTTGTGGAGAGTCT+TGG + chr4_3:52204747-52204766 None:intergenic 50.0%
CTCTCCACAAGCCAAAGCAA+TGG - chr4_3:52204750-52204769 Msa0646430:CDS 50.0%
GTGTGACATGCCACCATCTT+TGG + chr4_3:52204982-52205001 None:intergenic 50.0%
!! TGGGGATTTGGTGGAAGCTA+TGG - chr4_3:52205086-52205105 Msa0646430:CDS 50.0%
!! CTTTGGCTTGTGGAGAGTCT+TGG + chr4_3:52204747-52204766 None:intergenic 50.0%
CTCTCCACAAGCCAAAGCAA+TGG - chr4_3:52204750-52204769 Msa0646430:CDS 50.0%
GTGTGACATGCCACCATCTT+TGG + chr4_3:52204982-52205001 None:intergenic 50.0%
!! TGGGGATTTGGTGGAAGCTA+TGG - chr4_3:52205086-52205105 Msa0646430:CDS 50.0%
!! CAGGTTCTTGGTGTTGTGCC+AGG - chr4_3:52205159-52205178 Msa0646430:CDS 55.0%
!! CAGGTTCTTGGTGTTGTGCC+AGG - chr4_3:52205159-52205178 Msa0646430:CDS 55.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 52204120 52205509 52204120 ID=Msa0646430;Name=Msa0646430
chr4_3 mRNA 52204120 52205509 52204120 ID=Msa0646430-mRNA-1;Parent=Msa0646430;Name=Msa0646430-mRNA-1;_AED=0.05;_eAED=0.05;_QI=109|1|1|1|1|1|2|243|301
chr4_3 exon 52204120 52205196 52204120 ID=Msa0646430-mRNA-1:exon:12790;Parent=Msa0646430-mRNA-1
chr4_3 exon 52205329 52205509 52205329 ID=Msa0646430-mRNA-1:exon:12789;Parent=Msa0646430-mRNA-1
chr4_3 five_prime_UTR 52205401 52205509 52205401 ID=Msa0646430-mRNA-1:five_prime_utr;Parent=Msa0646430-mRNA-1
chr4_3 CDS 52205329 52205400 52205329 ID=Msa0646430-mRNA-1:cds;Parent=Msa0646430-mRNA-1
chr4_3 CDS 52204363 52205196 52204363 ID=Msa0646430-mRNA-1:cds;Parent=Msa0646430-mRNA-1
chr4_3 three_prime_UTR 52204120 52204362 52204120 ID=Msa0646430-mRNA-1:three_prime_utr;Parent=Msa0646430-mRNA-1
Gene Sequence

>Msa0646430

ATGCTAAGCAGAAACATGAGTCCAAAGTTTATATCTGAGATCCTCTTTCTTCATCTACTAGTACTAATCACGATTTTTTATGGAAGCAGAGCAAGAGAATTAGCTGGAACAGAAAGCAAACTCTTGGATATTGCACTGAACAAAACTGCTACTAATGAACATCAAACAGAACACAAACATCATGCACATAATCACAATCACATGGACCCTTCTGTTATGGTGTTCTTCACCTTGAAAGACTTAAAAGTTGGGAAAAGAATGCAAATTAATTTTCCCAAAAGAGACCCTTCAATTTCCCCTAAGTTTTGGCCAAGAGACAAAGCTGATTCACTTCCTTTTTCTTTGAACAAACTTCCAACTCTTCTCAAAATCTTCTCTTTATCCCAAGACTCTCCACAAGCCAAAGCAATGGTAGATACCCTTACAGAATGTGAGAGCAAACCCATCAAAGGAGAAGTGAAATTCTGCGCGACTTCTTTAGAATCTATGCTTGATTTCACTCAAACCATTCTTGGTTTTTCAAATGATCTTCAAGTTTATGCAACTTCACATTTAACCAAATCAAGTGTCACTTTTCAGAACTATACTATATTAGACAAGATTATGAGGATTTCAGCTCCAAAGATGGTGGCATGTCACACTATGCCTTACCCTTATGCTGTTTTCTATTGCCATAGTCAAGAAAGTGAGAATAGGATATATAGAGTTTCACTTGTTGGTGATAATGGGGATTTGGTGGAAGCTATGGTTGTTTGTCATATGGATACTTCTCATTGGGGACATGGTCATGTTTCATTTCAGGTTCTTGGTGTTGTGCCAGGAAGTTCTAATGTGTGTCACTTTTTTCCAGCTGATAATTTCATATGGGTTCCAAAATTGGAAGTTCAGGGTGTTTCAGACATGTGA

Protein sequence

>Msa0646430

MLSRNMSPKFISEILFLHLLVLITIFYGSRARELAGTESKLLDIALNKTATNEHQTEHKHHAHNHNHMDPSVMVFFTLKDLKVGKRMQINFPKRDPSISPKFWPRDKADSLPFSLNKLPTLLKIFSLSQDSPQAKAMVDTLTECESKPIKGEVKFCATSLESMLDFTQTILGFSNDLQVYATSHLTKSSVTFQNYTILDKIMRISAPKMVACHTMPYPYAVFYCHSQESENRIYRVSLVGDNGDLVEAMVVCHMDTSHWGHGHVSFQVLGVVPGSSNVCHFFPADNFIWVPKLEVQGVSDM*