AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0467330

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0467330 MtrunA17_Chr3g0121271 96.386 498 17 1 42 538 1 498 0.0 999
Msa0467330 MtrunA17_Chr8g0378621 70.858 501 138 4 42 538 1 497 0.0 739
Msa0467330 MtrunA17_Chr5g0434591 51.756 427 203 2 66 490 22 447 4.35e-166 480
Msa0467330 MtrunA17_Chr3g0110371 49.663 445 221 2 52 494 9 452 7.12e-166 479
Msa0467330 MtrunA17_Chr1g0161011 51.636 428 204 2 65 490 22 448 8.86e-165 477
Msa0467330 MtrunA17_Chr4g0075031 49.654 433 215 2 64 494 42 473 2.04e-156 456
Msa0467330 MtrunA17_Chr8g0389741 38.462 442 260 4 64 497 25 462 1.03e-117 357
Msa0467330 MtrunA17_Chr6g0487261 36.226 461 275 6 47 495 9 462 2.42e-112 343
Msa0467330 MtrunA17_Chr1g0177171 36.703 455 248 5 67 485 38 488 1.14e-107 330
Msa0467330 MtrunA17_Chr5g0439251 35.955 445 256 5 67 486 25 465 1.79e-101 314
Msa0467330 MtrunA17_Chr4g0034901 35.147 441 268 5 65 491 27 463 4.62e-91 286
Msa0467330 MtrunA17_Chr3g0144531 35.208 480 278 9 23 491 1 458 2.69e-90 285
Msa0467330 MtrunA17_Chr8g0339191 33.949 433 269 7 68 487 30 458 2.40e-88 280
Msa0467330 MtrunA17_Chr7g0234821 33.562 438 267 8 68 487 27 458 8.96e-87 275
Msa0467330 MtrunA17_Chr4g0046311 34.633 436 257 8 67 481 23 451 2.72e-84 269
Msa0467330 MtrunA17_Chr3g0119541 38.730 315 189 2 64 377 23 334 6.85e-80 254
Msa0467330 MtrunA17_Chr4g0043511 34.667 450 257 10 67 487 62 503 7.94e-80 260
Msa0467330 MtrunA17_Chr7g0223961 34.325 437 256 13 67 485 23 446 2.83e-77 250
Msa0467330 MtrunA17_Chr4g0043851 38.658 313 187 3 65 376 30 338 1.05e-74 242
Msa0467330 MtrunA17_Chr1g0189111 37.231 325 197 5 67 390 31 349 5.11e-71 233
Msa0467330 MtrunA17_Chr4g0003281 36.522 345 209 5 52 390 20 360 8.68e-70 229
Msa0467330 MtrunA17_Chr2g0285901 35.952 331 206 4 47 376 4 329 3.75e-68 225
Msa0467330 MtrunA17_Chr2g0321511 36.364 330 202 5 64 392 26 348 4.11e-68 224
Msa0467330 MtrunA17_Chr1g0146831 37.805 328 191 7 52 376 18 335 5.30e-67 221
Msa0467330 MtrunA17_Chr4g0026321 35.077 325 201 5 64 385 26 343 6.25e-67 221
Msa0467330 MtrunA17_Chr1g0155001 35.890 326 205 4 66 390 23 345 2.08e-65 218
Msa0467330 MtrunA17_Chr3g0138741 33.181 437 263 16 67 487 31 454 1.07e-64 218
Msa0467330 MtrunA17_Chr4g0064021 34.557 327 209 3 68 393 27 349 1.73e-64 215
Msa0467330 MtrunA17_Chr1g0148391 29.935 461 295 16 42 487 1 448 1.54e-58 201
Msa0467330 MtrunA17_Chr2g0306311 29.019 479 285 15 50 485 13 479 5.31e-56 196
Msa0467330 MtrunA17_Chr4g0039011 32.903 310 193 5 67 376 42 336 2.53e-55 190
Msa0467330 MtrunA17_Chr4g0062771 29.186 442 282 15 64 487 28 456 3.57e-54 190
Msa0467330 MtrunA17_Chr4g0076581 30.482 456 288 15 48 487 14 456 1.34e-53 189
Msa0467330 MtrunA17_Chr2g0290821 30.046 436 273 16 67 485 28 448 1.36e-53 189
Msa0467330 MtrunA17_Chr4g0039071 32.903 310 199 4 67 376 25 325 3.19e-53 185
Msa0467330 MtrunA17_Chr7g0250301 31.988 322 205 8 67 387 8 316 3.33e-53 183
Msa0467330 MtrunA17_Chr4g0038961 33.762 311 188 8 67 376 23 316 3.77e-53 183
Msa0467330 MtrunA17_Chr4g0039021 31.908 304 196 2 87 390 1 293 4.11e-53 182
Msa0467330 MtrunA17_Chr2g0294601 33.158 380 232 13 15 389 9 371 6.45e-53 184
Msa0467330 MtrunA17_Chr4g0038981 32.716 324 201 7 67 390 23 329 7.89e-53 182
Msa0467330 MtrunA17_Chr4g0069801 28.448 464 297 18 42 485 1 449 3.84e-52 185
Msa0467330 MtrunA17_Chr4g0038971 32.716 324 201 7 67 390 23 329 7.17e-52 180
Msa0467330 MtrunA17_Chr8g0383311 29.047 451 286 17 67 496 43 480 1.25e-51 184
Msa0467330 MtrunA17_Chr4g0038941 33.871 310 189 6 67 376 52 345 1.66e-51 179
Msa0467330 MtrunA17_Chr2g0294591 32.432 333 201 7 65 390 28 343 2.12e-51 179
Msa0467330 MtrunA17_Chr7g0253091 29.122 467 288 19 45 487 3 450 7.09e-49 176
Msa0467330 MtrunA17_Chr6g0461601 29.412 442 277 17 67 487 26 453 2.65e-47 171
Msa0467330 MtrunA17_Chr3g0129341 29.806 463 284 22 48 487 11 455 4.73e-47 171
Msa0467330 MtrunA17_Chr1g0174261 32.028 281 182 4 96 376 1 272 1.08e-44 161
Msa0467330 MtrunA17_Chr3g0105981 29.691 421 258 15 67 469 27 427 3.40e-43 159
Msa0467330 MtrunA17_Chr7g0250321 31.379 290 185 7 47 335 10 286 2.40e-40 147
Msa0467330 MtrunA17_Chr5g0436361 32.602 319 203 9 83 398 53 362 4.95e-38 144
Msa0467330 MtrunA17_Chr5g0447651 50.588 85 42 0 403 487 30 114 4.28e-25 100
Msa0467330 MtrunA17_Chr4g0076131 42.574 101 53 1 387 487 17 112 2.11e-24 98.2
Msa0467330 MtrunA17_Chr8g0381081 47.126 87 46 0 402 488 56 142 1.86e-22 94.7
Msa0467330 MtrunA17_Chr8g0378361 39.695 131 70 2 400 522 27 156 3.11e-22 94.4
Msa0467330 MtrunA17_Chr8g0378371 43.878 98 51 2 393 490 23 116 2.55e-21 89.4
Msa0467330 MtrunA17_Chr4g0040911 40.323 124 68 2 403 526 37 154 3.77e-21 90.9
Msa0467330 MtrunA17_Chr2g0294581 34.307 137 88 1 65 199 74 210 4.01e-21 93.6
Msa0467330 MtrunA17_Chr2g0294581 40.000 105 55 5 286 389 187 284 8.76e-14 72.0
Msa0467330 MtrunA17_Chr3g0096451 41.905 105 60 1 383 487 92 195 1.64e-20 91.3
Msa0467330 MtrunA17_Chr5g0443331 45.361 97 52 1 399 495 104 199 5.92e-20 90.1
Msa0467330 MtrunA17_Chr4g0076141 43.038 79 45 0 403 481 13 91 4.47e-19 82.4
Msa0467330 MtrunA17_Chr4g0043151 43.519 108 56 3 384 490 5 108 4.92e-19 85.5
Msa0467330 MtrunA17_Chr1g0154991 42.391 92 52 1 398 489 15 105 5.16e-19 82.8
Msa0467330 MtrunA17_Chr4g0061401 49.438 89 43 2 399 487 20 106 5.76e-19 85.9
Msa0467330 MtrunA17_Chr2g0304061 46.739 92 47 2 403 494 158 247 8.71e-19 87.8
Msa0467330 MtrunA17_Chr5g0401301 45.455 88 47 1 401 487 327 414 2.59e-18 87.4
Msa0467330 MtrunA17_Chr7g0271411 42.353 85 48 1 403 487 160 243 4.35e-18 85.1
Msa0467330 MtrunA17_Chr3g0120401 44.706 85 46 1 403 487 157 240 4.75e-18 84.0
Msa0467330 MtrunA17_Chr1g0193131 45.783 83 43 2 401 483 418 498 1.42e-17 86.3
Msa0467330 MtrunA17_Chr1g0213651 42.169 83 47 1 403 485 276 357 1.04e-16 82.0
Msa0467330 MtrunA17_Chr5g0419121 41.111 90 50 2 403 490 22 110 9.00e-16 77.4
Msa0467330 MtrunA17_Chr8g0378381 37.500 88 54 1 400 487 29 115 1.35e-15 73.2
Msa0467330 MtrunA17_Chr2g0313891 36.364 99 61 1 390 488 17 113 2.49e-15 72.4
Msa0467330 MtrunA17_Chr8g0380231 47.761 67 34 1 415 481 29 94 4.70e-14 68.2
Msa0467330 MtrunA17_Chr8g0378401 37.805 82 50 1 400 481 29 109 9.99e-14 67.8
Msa0467330 MtrunA17_Chr4g0018771 41.176 85 45 2 292 376 86 165 5.12e-13 68.6
Msa0467330 MtrunA17_Chr4g0018861 44.872 78 36 4 300 376 92 163 1.12e-12 67.4
Msa0467330 MtrunA17_Chr2g0304901 67.442 43 14 0 431 473 186 228 3.02e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0467330 AT3G13560.4 61.875 480 180 3 42 520 1 478 0.0 620
Msa0467330 AT3G13560.1 61.875 480 180 3 42 520 1 478 0.0 620
Msa0467330 AT3G13560.2 61.875 480 180 3 42 520 1 478 0.0 620
Msa0467330 AT3G13560.5 61.875 480 180 3 42 520 1 478 0.0 620
Msa0467330 AT3G13560.3 61.875 480 180 3 42 520 1 478 0.0 620
Msa0467330 AT2G01630.1 50.000 440 215 3 65 500 21 459 4.19e-164 476
Msa0467330 AT2G01630.3 50.358 419 205 2 65 481 21 438 6.82e-160 462
Msa0467330 AT1G66250.1 46.234 478 247 6 64 538 29 499 1.35e-156 457
Msa0467330 AT1G11820.2 49.302 430 215 2 66 493 43 471 2.05e-155 454
Msa0467330 AT1G11820.3 49.282 418 209 2 66 481 43 459 1.74e-149 437
Msa0467330 AT2G01630.2 50.136 367 180 2 65 429 21 386 4.38e-135 397
Msa0467330 AT2G05790.1 39.286 448 241 5 67 487 25 468 5.82e-116 352
Msa0467330 AT5G56590.1 39.908 436 245 6 64 487 23 453 8.92e-111 339
Msa0467330 AT4G29360.1 36.042 480 268 5 40 487 3 475 5.02e-107 330
Msa0467330 AT1G11820.1 48.318 327 168 1 66 392 43 368 1.69e-106 324
Msa0467330 AT4G29360.2 35.934 487 269 6 40 487 3 485 5.03e-106 328
Msa0467330 AT5G55180.1 36.927 436 258 5 65 487 25 456 3.29e-104 321
Msa0467330 AT4G26830.1 36.062 452 273 6 47 487 5 451 3.68e-102 315
Msa0467330 AT5G55180.2 37.123 431 254 5 65 482 25 451 5.54e-102 315
Msa0467330 AT4G26830.2 36.866 434 258 6 65 487 27 455 2.34e-101 313
Msa0467330 AT5G24318.1 36.017 472 269 12 34 490 5 458 7.83e-96 299
Msa0467330 AT4G34480.1 37.819 431 251 7 66 487 25 447 2.93e-94 296
Msa0467330 AT2G16230.1 36.323 446 266 5 65 502 23 458 1.95e-93 294
Msa0467330 AT5G24318.2 36.069 463 263 12 34 481 5 449 2.21e-92 290
Msa0467330 AT3G07320.1 33.638 437 266 9 68 487 26 455 2.16e-81 262
Msa0467330 AT4G14080.1 31.746 441 280 7 63 487 38 473 8.86e-79 255
Msa0467330 AT3G55430.1 32.965 452 271 15 50 487 16 449 1.42e-77 251
Msa0467330 AT3G23770.1 32.432 444 276 7 63 487 33 471 2.62e-76 249
Msa0467330 AT4G34480.3 38.596 342 193 7 155 487 3 336 2.68e-71 233
Msa0467330 AT1G32860.1 36.391 327 200 5 67 390 29 350 3.02e-71 234
Msa0467330 AT5G24318.3 36.923 325 183 7 176 487 1 316 5.08e-70 228
Msa0467330 AT1G30080.2 36.977 311 191 3 67 376 36 342 1.63e-68 226
Msa0467330 AT1G30080.1 36.977 311 191 3 67 376 36 342 3.06e-68 226
Msa0467330 AT2G27500.2 34.769 325 207 3 62 385 24 344 1.88e-67 223
Msa0467330 AT2G27500.1 34.769 325 207 3 62 385 24 344 3.74e-67 222
Msa0467330 AT4G18340.2 34.659 352 220 6 52 399 17 362 1.63e-66 220
Msa0467330 AT4G18340.1 34.659 352 220 6 52 399 17 362 3.88e-66 220
Msa0467330 AT3G15800.1 37.309 327 197 5 53 376 30 351 5.86e-66 219
Msa0467330 AT5G42720.1 37.380 313 191 3 66 376 25 334 6.70e-66 220
Msa0467330 AT2G26600.1 34.571 350 217 5 61 402 25 370 4.83e-64 214
Msa0467330 AT4G34480.2 36.624 314 195 3 66 378 25 335 7.07e-64 213
Msa0467330 AT5G24318.4 34.971 346 206 8 34 376 5 334 1.82e-63 212
Msa0467330 AT4G16260.1 36.994 346 205 8 47 392 5 337 7.24e-62 207
Msa0467330 AT5G42100.1 34.154 325 205 6 67 387 27 346 2.76e-60 205
Msa0467330 AT5G42100.2 34.154 325 205 6 67 387 27 346 3.21e-60 205
Msa0467330 AT2G39640.1 32.414 435 254 16 67 485 30 440 4.04e-60 208
Msa0467330 AT2G39640.1 31.915 94 63 1 400 493 457 549 1.57e-11 67.4
Msa0467330 AT4G16260.2 37.342 316 186 7 77 392 5 308 1.03e-59 200
Msa0467330 AT3G61810.1 33.636 330 201 6 67 390 55 372 7.10e-59 200
Msa0467330 AT4G31140.1 31.193 436 271 17 67 487 27 448 2.51e-57 199
Msa0467330 AT3G57270.1 35.849 318 193 7 61 377 21 328 2.36e-55 189
Msa0467330 AT5G20870.1 30.349 458 286 17 52 487 13 459 1.53e-54 192
Msa0467330 AT5G64790.1 28.782 476 299 16 52 507 14 469 3.26e-54 191
Msa0467330 AT2G27500.3 34.074 270 173 3 117 385 1 266 1.40e-52 181
Msa0467330 AT5G58090.1 29.680 438 277 16 67 487 22 445 1.52e-52 186
Msa0467330 AT2G19440.2 30.989 455 281 17 51 487 5 444 2.42e-51 182
Msa0467330 AT2G19440.1 30.989 455 281 17 51 487 5 444 2.42e-51 182
Msa0467330 AT3G24330.1 29.120 443 275 17 67 487 39 464 1.41e-50 181
Msa0467330 AT3G57260.1 33.742 326 201 6 52 377 17 327 3.24e-50 176
Msa0467330 AT3G57260.2 33.742 326 201 6 52 377 33 343 6.91e-50 176
Msa0467330 AT4G17180.1 30.512 449 277 17 54 487 12 440 1.39e-49 178
Msa0467330 AT5G58480.1 30.435 460 275 19 48 488 12 445 2.53e-49 177
Msa0467330 AT2G26600.2 35.165 273 168 4 135 402 8 276 5.59e-49 171
Msa0467330 AT1G64760.1 30.501 459 281 17 51 487 6 448 7.27e-49 176
Msa0467330 AT1G64760.2 30.501 459 281 17 51 487 6 448 7.27e-49 176
Msa0467330 AT3G57240.1 34.516 310 187 8 67 376 35 328 4.06e-48 170
Msa0467330 AT3G46570.1 34.627 335 204 11 67 396 27 351 7.45e-48 170
Msa0467330 AT3G04010.1 29.176 449 266 19 67 487 33 457 1.14e-47 173
Msa0467330 AT5G18220.1 27.564 468 300 18 43 487 4 455 1.69e-46 170
Msa0467330 AT3G55780.1 32.915 319 204 8 80 395 48 359 3.52e-44 161
Msa0467330 AT5G20330.1 29.721 323 213 7 67 387 34 344 1.55e-43 158
Msa0467330 AT5G20390.1 29.310 348 229 8 44 387 9 343 3.69e-43 157
Msa0467330 AT5G20340.1 30.462 325 208 9 67 387 43 353 1.70e-42 155
Msa0467330 AT1G77780.1 29.595 321 214 8 56 376 14 322 1.33e-41 153
Msa0467330 AT1G33220.1 28.239 301 201 6 67 364 34 322 1.73e-40 149
Msa0467330 AT1G77790.1 28.402 338 228 8 43 376 4 331 5.26e-40 149
Msa0467330 AT5G20560.1 26.667 330 228 8 50 376 16 334 1.26e-34 133
Msa0467330 AT5G35740.1 47.191 89 46 1 400 487 27 115 3.65e-26 103
Msa0467330 AT2G04910.2 48.193 83 43 0 403 485 15 97 5.70e-24 97.1
Msa0467330 AT1G66870.2 37.313 134 67 2 366 487 9 137 7.95e-24 97.8
Msa0467330 AT1G66870.1 44.944 89 49 0 399 487 22 110 4.04e-23 94.7
Msa0467330 AT5G67460.1 49.412 85 43 0 403 487 293 377 2.23e-22 99.8
Msa0467330 AT4G13600.1 40.541 111 64 2 403 513 61 169 1.15e-21 94.4
Msa0467330 AT2G30933.1 46.154 91 48 1 401 491 80 169 1.98e-21 93.6
Msa0467330 AT5G67460.2 51.899 79 38 0 403 481 293 371 3.89e-21 95.9
Msa0467330 AT1G66852.1 43.478 92 51 1 396 487 19 109 4.76e-21 89.0
Msa0467330 AT1G66855.1 41.573 89 52 0 400 488 23 111 7.16e-21 88.6
Msa0467330 AT1G18650.1 43.750 96 53 1 397 492 15 109 9.42e-21 90.5
Msa0467330 AT5G63240.1 40.230 87 50 1 403 487 40 126 1.76e-20 87.8
Msa0467330 AT2G04910.1 46.250 80 43 0 402 481 14 93 1.88e-20 87.8
Msa0467330 AT1G18650.2 43.750 96 53 1 397 492 15 109 2.37e-20 87.4
Msa0467330 AT3G58100.1 39.362 94 57 0 403 496 41 134 3.58e-20 88.6
Msa0467330 AT3G58100.2 39.362 94 57 0 403 496 117 210 5.55e-20 90.1
Msa0467330 AT1G29380.3 44.444 90 49 1 403 492 148 236 4.39e-19 87.8
Msa0467330 AT4G16165.1 38.710 93 57 0 396 488 19 111 5.66e-19 83.2
Msa0467330 AT4G05430.3 43.158 95 53 1 402 495 47 141 7.18e-19 84.7
Msa0467330 AT4G05430.1 43.158 95 53 1 402 495 22 116 7.75e-19 83.6
Msa0467330 AT2G30933.2 46.914 81 42 1 401 481 80 159 8.71e-19 84.0
Msa0467330 AT2G30933.3 46.914 81 42 1 401 481 80 159 8.71e-19 84.0
Msa0467330 AT1G29380.1 45.783 83 44 1 403 485 148 229 1.45e-18 87.0
Msa0467330 AT1G09460.1 44.792 96 50 2 399 494 133 225 5.66e-18 85.5
Msa0467330 AT5G61130.1 41.758 91 52 1 397 487 15 104 1.34e-17 82.0
Msa0467330 AT1G79480.1 42.529 87 49 1 399 485 307 392 1.75e-17 85.1
Msa0467330 AT1G79480.2 42.529 87 49 1 399 485 306 391 1.90e-17 85.1
Msa0467330 AT4G09462.1 38.889 90 54 1 399 488 25 113 2.19e-17 78.6
Msa0467330 AT4G09465.1 37.500 96 59 1 393 488 21 115 3.12e-17 78.2
Msa0467330 AT4G09464.1 37.500 96 59 1 393 488 21 115 3.27e-17 78.2
Msa0467330 AT4G09467.1 37.500 96 59 1 393 488 21 115 3.27e-17 78.2
Msa0467330 AT1G29380.4 43.902 82 45 1 403 484 148 228 2.45e-16 79.0
Msa0467330 AT1G29380.2 43.902 82 45 1 403 484 148 228 2.45e-16 79.0
Msa0467330 AT4G05430.2 42.500 80 46 0 402 481 47 126 2.45e-16 75.9
Msa0467330 AT2G43670.1 37.079 89 54 1 399 487 31 117 4.33e-16 75.1
Msa0467330 AT5G63225.1 39.326 89 53 1 399 487 21 108 7.75e-16 73.9
Msa0467330 AT4G09466.1 35.417 96 61 1 393 488 21 115 1.24e-15 73.6
Msa0467330 AT1G69295.1 42.222 90 50 2 395 484 13 100 1.98e-15 76.3
Msa0467330 AT4G09090.1 38.202 89 54 1 399 487 27 114 2.45e-15 72.8
Msa0467330 AT5G63250.1 37.931 87 52 1 403 487 42 128 3.14e-15 73.2
Msa0467330 AT1G69295.2 43.373 83 45 2 402 484 16 96 1.77e-14 73.2
Msa0467330 AT1G26450.1 45.679 81 42 2 395 475 13 91 1.91e-14 72.8
Msa0467330 AT2G03505.3 36.145 83 52 1 399 481 17 98 2.73e-14 69.7
Msa0467330 AT2G03505.4 36.145 83 52 1 399 481 17 98 3.06e-14 71.2
Msa0467330 AT2G03505.1 36.145 83 52 1 399 481 17 98 3.06e-14 71.2
Msa0467330 AT2G03505.2 36.145 83 52 1 399 481 17 98 3.06e-14 71.2
Msa0467330 AT2G29735.1 38.462 91 53 2 399 487 27 116 1.12e-13 68.2
Msa0467330 AT1G78520.1 35.227 88 55 1 400 487 29 114 1.78e-13 67.4
Msa0467330 AT5G53600.1 32.184 87 57 1 401 487 27 111 5.80e-13 65.9
Msa0467330 AT5G53610.1 32.584 89 58 1 399 487 24 110 1.10e-12 65.1
Msa0467330 AT5G63230.1 35.955 89 56 1 399 487 22 109 1.26e-12 65.1
Msa0467330 AT5G08000.1 37.363 91 56 1 397 487 15 104 7.23e-12 65.1
Msa0467330 AT2G43660.2 32.558 86 58 0 402 487 34 119 1.06e-11 62.8
Msa0467330 AT2G43660.1 32.558 86 58 0 402 487 33 118 1.16e-11 62.4
Msa0467330 AT5G08000.2 37.209 86 53 1 402 487 39 123 2.14e-11 63.9
Msa0467330 AT1G13830.2 35.632 87 53 2 403 487 35 120 2.34e-11 63.9
Msa0467330 AT1G13830.1 35.632 87 53 2 403 487 21 106 2.80e-11 63.5

Find 127 sgRNAs with CRISPR-Local

Find 230 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTTCCTTCCTCTCTTTCTT+TGG 0.174848 3_3:-68574643 Msa0467330:CDS
TTTGAGCGAATAGATTTATT+AGG 0.180106 3_3:-68571297 Msa0467330:three_prime_UTR
TCCATCTTGTATGGTGTATT+TGG 0.202706 3_3:-68571425 Msa0467330:three_prime_UTR
TTAAATGCTCACCCTTATTA+TGG 0.209582 3_3:-68573416 Msa0467330:CDS
CTCTTCTACTAGTCTACTTT+TGG 0.219586 3_3:-68571588 Msa0467330:CDS
ATTGCAATTGCAAGCTAAAA+AGG 0.226732 3_3:+68571534 None:intergenic
CCATCTTGTATGGTGTATTT+GGG 0.257093 3_3:-68571424 Msa0467330:three_prime_UTR
CCTTTAGTATATCCATAATA+AGG 0.275337 3_3:+68573404 None:intergenic
AGGAGAGTACTTAATGATTC+AGG 0.289249 3_3:-68573125 Msa0467330:CDS
GCTACTGTAAACAATGTATT+AGG 0.301390 3_3:-68574565 Msa0467330:intron
CTTCAACGCCGGTGTTTGAT+AGG 0.307975 3_3:+68573804 None:intergenic
CATTAAATTTCAATGATATA+CGG 0.312439 3_3:-68573244 Msa0467330:CDS
CCTAATCAAATTATTATTGT+AGG 0.316111 3_3:+68573145 None:intergenic
CGGATCATTGTCACAGAAAC+TGG 0.324873 3_3:-68573224 Msa0467330:CDS
GAAACTGGTTGGCCACATTT+AGG 0.331009 3_3:-68573209 Msa0467330:CDS
TTGAGCGAATAGATTTATTA+GGG 0.356906 3_3:-68571296 Msa0467330:three_prime_UTR
CCAGCACCAATAGGACTTAC+AGG 0.369992 3_3:+68571647 None:intergenic
ACAAGAACACGAGCAACATT+TGG 0.372068 3_3:+68573632 None:intergenic
TGAAAAGATGGAAGCTGGTT+TGG 0.374705 3_3:-68572892 Msa0467330:CDS
GAAGCTGCCATACCTATTCT+TGG 0.379237 3_3:-68574686 Msa0467330:CDS
GATTTGTGTTCCATCTTGTA+TGG 0.386913 3_3:-68571434 Msa0467330:three_prime_UTR
CCTACAATAATAATTTGATT+AGG 0.390318 3_3:-68573145 Msa0467330:CDS
AAGTAAGGACTAAACTTAGA+AGG 0.390744 3_3:+68571240 None:intergenic
CTGGGCTTGCGGAGAAGGCC+GGG 0.392967 3_3:-68572868 Msa0467330:CDS
TTTGATGAAGATAAAAGAAT+AGG 0.393939 3_3:-68573053 Msa0467330:CDS
ACCTATATCTGAAAGACATT+GGG 0.397818 3_3:-68573030 Msa0467330:CDS
AATTGCAATTCAATGGTCAT+TGG 0.398253 3_3:-68571520 Msa0467330:three_prime_UTR
GACGAAGAAATATTGAGAAT+TGG 0.401023 3_3:-68573764 Msa0467330:CDS
ACTGGGCTTGCGGAGAAGGC+CGG 0.403590 3_3:-68572869 Msa0467330:CDS
AAGGAACAGTGTAGCGGAAA+AGG 0.404666 3_3:+68574658 None:intergenic
TTGGACTGGGCTTGCGGAGA+AGG 0.404683 3_3:-68572873 Msa0467330:CDS
AAACTAGCGTCCGGTTCGTT+AGG 0.408986 3_3:+68573182 None:intergenic
CGAAGTAAAGCATATTCAAT+TGG 0.412645 3_3:+68573368 None:intergenic
AGATGGAAGCTGGTTTGGAC+TGG 0.413864 3_3:-68572887 Msa0467330:CDS
TTTGGACCTGTAAGTCCTAT+TGG 0.417869 3_3:-68571653 Msa0467330:CDS
GTAGAAGGAGGAAAAGGCTT+AGG 0.421008 3_3:+68573518 None:intergenic
GAGTTAAAAGTGGCTGTAGA+AGG 0.422615 3_3:+68573503 None:intergenic
AGCTTGCAATTGCAATTCAA+TGG 0.424865 3_3:-68571527 Msa0467330:three_prime_UTR
ATAATCATTATAAGCATAAG+AGG 0.428971 3_3:+68572782 None:intergenic
AACTTGAGCACGGGTGGTGA+TGG 0.431835 3_3:-68571695 Msa0467330:CDS
TATGATGTAGGTGCATTTGT+GGG 0.437475 3_3:-68573947 Msa0467330:intron
AAACTTTGACGCGGAAATGA+AGG 0.439597 3_3:+68573567 None:intergenic
GTAATTTACACTCTCAAGAT+AGG 0.446557 3_3:-68571395 Msa0467330:three_prime_UTR
CAAGAACACGAGCAACATTT+GGG 0.450275 3_3:+68573633 None:intergenic
AGGAACAGTGTAGCGGAAAA+GGG 0.454356 3_3:+68574659 None:intergenic
AACTGTGCAGCTATTCAAGC+TGG 0.464051 3_3:-68572843 Msa0467330:CDS
CCCCAATGTCTTTCAGATAT+AGG 0.465833 3_3:+68573029 None:intergenic
CCTGTAAGTCCTATTGGTGC+TGG 0.466516 3_3:-68571647 Msa0467330:CDS
TGACAGTATGTTTGATGCTA+TGG 0.468256 3_3:-68573294 Msa0467330:CDS
GGCACTGTGAAGATGATTCA+TGG 0.472035 3_3:+68573604 None:intergenic
GATGGAAGCTGGTTTGGACT+GGG 0.472061 3_3:-68572886 Msa0467330:CDS
AAGAATAGGTATGGCAGCTT+CGG 0.475818 3_3:+68574688 None:intergenic
GTATGATGTAGGTGCATTTG+TGG 0.481676 3_3:-68573948 Msa0467330:intron
AAAGCTATTAAAATTAAGTA+AGG 0.482276 3_3:+68571225 None:intergenic
CTTTAGTATATCCATAATAA+GGG 0.487078 3_3:+68573405 None:intergenic
AATTCTCAATATTTCTTCGT+CGG 0.489082 3_3:+68573766 None:intergenic
GACCTATATCTGAAAGACAT+TGG 0.495328 3_3:-68573031 Msa0467330:CDS
ATCCATGTTGCAGCCACTGA+TGG 0.500653 3_3:+68573734 None:intergenic
TTCTCCTAGTCAACCGATGA+TGG 0.501901 3_3:-68573102 Msa0467330:CDS
ATGAAGGTTTGAAGCAACTA+AGG 0.507056 3_3:+68573583 None:intergenic
ACCGGCGTTGAAGTCCTTGT+TGG 0.507660 3_3:-68573794 Msa0467330:CDS
TTCAACGCCGGTGTTTGATA+GGG 0.509490 3_3:+68573805 None:intergenic
AACTTCAATCCAGCACCAAT+AGG 0.509537 3_3:+68571638 None:intergenic
TTTCACATGTACTCCAGTGT+TGG 0.510999 3_3:-68574739 Msa0467330:exon
AGTTTCGACGCCTCAGTCCA+TGG 0.513215 3_3:-68573549 Msa0467330:CDS
AGGCTTAGGGATTAAATCCA+TGG 0.514185 3_3:+68573532 None:intergenic
TGGCGCGGACGCTGAAAAGA+TGG 0.514463 3_3:-68572904 Msa0467330:CDS
TCATAACGGAATAATGTGTT+CGG 0.519391 3_3:+68573314 None:intergenic
GAATAGCTGCACAGTTTGCC+CGG 0.523260 3_3:+68572850 None:intergenic
CCTTATTATGGATATACTAA+AGG 0.527242 3_3:-68573404 Msa0467330:CDS
CCAGTGTTGGACAAAAGAAA+AGG 0.527335 3_3:-68574726 Msa0467330:CDS
CATGGATCATGTGTATATGC+AGG 0.527638 3_3:-68571832 Msa0467330:CDS
TAGAAGAACTAAAACTCAAA+GGG 0.531024 3_3:+68572973 None:intergenic
TTAGAAGAACTAAAACTCAA+AGG 0.532144 3_3:+68572972 None:intergenic
CCCAAATACACCATACAAGA+TGG 0.532937 3_3:+68571424 None:intergenic
CATCAAACATACTGTCATAA+CGG 0.533138 3_3:+68573300 None:intergenic
GCTGGTTTGGACTGGGCTTG+CGG 0.533574 3_3:-68572879 Msa0467330:CDS
ACTTGAGCACGGGTGGTGAT+GGG 0.535349 3_3:-68571694 Msa0467330:CDS
GACGCTGAAAAGATGGAAGC+TGG 0.535957 3_3:-68572897 Msa0467330:CDS
AATATCACAACAATAGCAGT+TGG 0.540102 3_3:-68573677 Msa0467330:CDS
CGTTAACTTACTTGGATCCT+CGG 0.542447 3_3:+68572698 None:intergenic
TAGAAGGAGGAAAAGGCTTA+GGG 0.544622 3_3:+68573519 None:intergenic
GTGGCTGTAGAAGGAGGAAA+AGG 0.545922 3_3:+68573512 None:intergenic
CTTCGTCGGTGACGCCAACA+AGG 0.546156 3_3:+68573780 None:intergenic
TGGCAGCTTCGGTTGAGTTG+AGG 0.546842 3_3:+68574699 None:intergenic
TTTAGGTGGACCTAACGAAC+CGG 0.547039 3_3:-68573192 Msa0467330:CDS
CTCCATCAGTGGCTGCAACA+TGG 0.549987 3_3:-68573736 Msa0467330:CDS
CATCTTGTATGGTGTATTTG+GGG 0.554582 3_3:-68571423 Msa0467330:three_prime_UTR
TTTCTAATCCAAAGAAAGAG+AGG 0.555267 3_3:+68574635 None:intergenic
GCCAACAAGGACTTCAACGC+CGG 0.557159 3_3:+68573793 None:intergenic
GCAACAATATTTGAAGCTGA+TGG 0.558424 3_3:+68573893 None:intergenic
ATCAGTTCTAACTTGAGCAC+GGG 0.563571 3_3:-68571704 Msa0467330:intron
TTAAAAGTGGCTGTAGAAGG+AGG 0.569222 3_3:+68573506 None:intergenic
CTGTGAAGATGATTCATGGC+AGG 0.571275 3_3:+68573608 None:intergenic
AACAATAGCAGTTGGAAGTG+AGG 0.580046 3_3:-68573669 Msa0467330:CDS
ATAGCCATCATCGGTTGACT+AGG 0.580777 3_3:+68573098 None:intergenic
TAATCCAAAGAAAGAGAGGA+AGG 0.586855 3_3:+68574639 None:intergenic
ATCAAACAATTCATATAAGT+AGG 0.587450 3_3:+68573070 None:intergenic
TATCAGTTCTAACTTGAGCA+CGG 0.590597 3_3:-68571705 Msa0467330:intron
GTTCCATGATGAGTTAAAAG+TGG 0.590802 3_3:+68573493 None:intergenic
GGAACAGTGTAGCGGAAAAG+GGG 0.591017 3_3:+68574660 None:intergenic
TAGAAGAGAATGCATAGTGA+AGG 0.600654 3_3:+68571603 None:intergenic
CATTATAAGCATAAGAGGCA+TGG 0.602398 3_3:+68572787 None:intergenic
ACATCATTGGGGAAATAGCA+AGG 0.603276 3_3:+68572816 None:intergenic
ACTGGTTGGCCACATTTAGG+TGG 0.605390 3_3:-68573206 Msa0467330:CDS
AAGAGTGAGCAATAACGCAC+TGG 0.605830 3_3:+68574588 None:intergenic
TCATTGTCACAGAAACTGGT+TGG 0.608595 3_3:-68573220 Msa0467330:CDS
TATGGATATACTAAAGGAGA+CGG 0.611436 3_3:-68573398 Msa0467330:CDS
ACTGTGCAGCTATTCAAGCT+GGG 0.611715 3_3:-68572842 Msa0467330:CDS
ATTGTTGTGATATTTGTGTG+AGG 0.612136 3_3:+68573686 None:intergenic
CAGTATGTTTGATGCTATGG+TGG 0.617131 3_3:-68573291 Msa0467330:CDS
AGTTCTAACTTGAGCACGGG+TGG 0.632909 3_3:-68571701 Msa0467330:CDS
TAGGTATTAATAGCCATCAT+CGG 0.632912 3_3:+68573089 None:intergenic
TTGTGTGGCTAAAGATGGCG+CGG 0.639037 3_3:-68572919 Msa0467330:CDS
ATGATGTAGGTGCATTTGTG+GGG 0.642405 3_3:-68573946 Msa0467330:intron
GATCATGTGTATATGCAGGA+AGG 0.650405 3_3:-68571828 Msa0467330:intron
TCGTTAGGTCCACCTAAATG+TGG 0.659828 3_3:+68573197 None:intergenic
AATTGGAGAATCTCCATCAG+TGG 0.660534 3_3:-68573747 Msa0467330:CDS
GAGAGGAAGGAACAGTGTAG+CGG 0.661007 3_3:+68574652 None:intergenic
CCTATATCTGAAAGACATTG+GGG 0.668424 3_3:-68573029 Msa0467330:CDS
CTACAAGCCCTATCAAACAC+CGG 0.677952 3_3:-68573812 Msa0467330:CDS
GGGATTAAATCCATGGACTG+AGG 0.686707 3_3:+68573539 None:intergenic
GAACAGTGTAGCGGAAAAGG+GGG 0.691392 3_3:+68574661 None:intergenic
TGATGTAGGTGCATTTGTGG+GGG 0.706821 3_3:-68573945 Msa0467330:intron
TACAGCTATGATAACTACCG+AGG 0.729167 3_3:-68572715 Msa0467330:CDS
GCAGTAGAAGACAACAAACG+AGG 0.752143 3_3:-68571341 Msa0467330:three_prime_UTR
GAGGCGTCGAAACTTTGACG+CGG 0.779048 3_3:+68573558 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTGTTATATAAAACTAATAT+TGG - chr3_3:68574147-68574166 Msa0467330:intron 10.0%
!!! GTTTTATATTTTCTTTTTAA+AGG - chr3_3:68574410-68574429 Msa0467330:intron 10.0%
!!! ATAAGTAAATTTTTTTTGTA+GGG + chr3_3:68574697-68574716 None:intergenic 10.0%
!!! TATAAGTAAATTTTTTTTGT+AGG + chr3_3:68574698-68574717 None:intergenic 10.0%
!! TTAAAAAATTTAAGAGTTTA+AGG + chr3_3:68574758-68574777 None:intergenic 10.0%
!!! TATACTATGTTCTTTTTTTT+TGG - chr3_3:68571439-68571458 Msa0467330:three_prime_UTR 15.0%
!!! TTGTATTTTGACTATAAAAA+TGG + chr3_3:68571551-68571570 None:intergenic 15.0%
!! CATTAAATTTCAATGATATA+CGG - chr3_3:68572646-68572665 Msa0467330:intron 15.0%
!!! TAAAATTTGTTAGCTTATTT+AGG - chr3_3:68573396-68573415 Msa0467330:CDS 15.0%
!! AAAGCTATTAAAATTAAGTA+AGG + chr3_3:68574668-68574687 None:intergenic 15.0%
!!! GTTTTTCATTTGTAAAGATT+GGG - chr3_3:68571477-68571496 Msa0467330:three_prime_UTR 20.0%
!!! TGATTTTCTCAAATTATTAG+CGG + chr3_3:68571665-68571684 None:intergenic 20.0%
!! TTTGAGAAAATCACATAATT+CGG - chr3_3:68571672-68571691 Msa0467330:CDS 20.0%
!!! AATTTTAAAGAATAACATCC+TGG - chr3_3:68571815-68571834 Msa0467330:intron 20.0%
!! TTATTTATCATGTATGATGT+AGG - chr3_3:68571931-68571950 Msa0467330:intron 20.0%
!! CTTTAGTATATCCATAATAA+GGG + chr3_3:68572488-68572507 None:intergenic 20.0%
!! CCTAATCAAATTATTATTGT+AGG + chr3_3:68572748-68572767 None:intergenic 20.0%
!! CCTACAATAATAATTTGATT+AGG - chr3_3:68572745-68572764 Msa0467330:CDS 20.0%
!! ATCAAACAATTCATATAAGT+AGG + chr3_3:68572823-68572842 None:intergenic 20.0%
!! TTTGATGAAGATAAAAGAAT+AGG - chr3_3:68572837-68572856 Msa0467330:CDS 20.0%
!! ATAATCATTATAAGCATAAG+AGG + chr3_3:68573111-68573130 None:intergenic 20.0%
!! TTATCAAAAAATGAATAGTG+TGG - chr3_3:68573130-68573149 Msa0467330:CDS 20.0%
!! TATCAAAAAATGAATAGTGT+GGG - chr3_3:68573131-68573150 Msa0467330:CDS 20.0%
!! CATTTAATCTGAATATTTCA+TGG - chr3_3:68573904-68573923 Msa0467330:CDS 20.0%
!! TTAGTGATAATCACAAAAAA+AGG + chr3_3:68573950-68573969 None:intergenic 20.0%
!! TCTATACAAATCTTCAATAT+AGG + chr3_3:68573999-68574018 None:intergenic 20.0%
!! GTAACTCTAATTCATTATAA+TGG + chr3_3:68574112-68574131 None:intergenic 20.0%
!!! ATTAGGGTTAAATATGTTTT+TGG - chr3_3:68574610-68574629 Msa0467330:CDS 20.0%
!!! AAACAAAATTTATTTTCGCA+GGG + chr3_3:68574729-68574748 None:intergenic 20.0%
!!! TAAACAAAATTTATTTTCGC+AGG + chr3_3:68574730-68574749 None:intergenic 20.0%
! AAACTATGAAGCTTCAAAAA+TGG - chr3_3:68571275-68571294 Msa0467330:three_prime_UTR 25.0%
! AGAATAATTGAGATTGACAA+AGG + chr3_3:68571367-68571386 None:intergenic 25.0%
!!! TTTTTGGTTTCATTATACCA+AGG - chr3_3:68571455-68571474 Msa0467330:three_prime_UTR 25.0%
! TCTTTACAAATGAAAAACCT+TGG + chr3_3:68571475-68571494 None:intergenic 25.0%
!! GGTTTTTCATTTGTAAAGAT+TGG - chr3_3:68571476-68571495 Msa0467330:three_prime_UTR 25.0%
! TAATGTGATCTAATATCAAC+TGG + chr3_3:68571914-68571933 None:intergenic 25.0%
! AATTCTCAATATTTCTTCGT+CGG + chr3_3:68572127-68572146 None:intergenic 25.0%
! CCTTTAGTATATCCATAATA+AGG + chr3_3:68572489-68572508 None:intergenic 25.0%
! CCTTATTATGGATATACTAA+AGG - chr3_3:68572486-68572505 Msa0467330:intron 25.0%
!! AATTTTCTTTGTTGAAGGAA+GGG + chr3_3:68572550-68572569 None:intergenic 25.0%
!! TCAACAATTTTCTTTGTTGA+AGG + chr3_3:68572555-68572574 None:intergenic 25.0%
! TAGAAGAACTAAAACTCAAA+GGG + chr3_3:68572920-68572939 None:intergenic 25.0%
! TTAGAAGAACTAAAACTCAA+AGG + chr3_3:68572921-68572940 None:intergenic 25.0%
!! AGTTCTTCTAACAAGATTTT+CGG - chr3_3:68572930-68572949 Msa0467330:CDS 25.0%
! GGTTATAAGTAATTACTTGT+TGG - chr3_3:68573236-68573255 Msa0467330:CDS 25.0%
! TGCAAGTTACTTGAAAAAAA+TGG - chr3_3:68573271-68573290 Msa0467330:CDS 25.0%
! ACTTGAAAAAAATGGTGTTT+AGG - chr3_3:68573279-68573298 Msa0467330:CDS 25.0%
! GTGGTTATATGACATTATAA+AGG + chr3_3:68573519-68573538 None:intergenic 25.0%
!! AGAATAATTTGAAAAGCATG+TGG + chr3_3:68573538-68573557 None:intergenic 25.0%
!!! TTGAAAATTACGTCACTTTT+GGG + chr3_3:68573614-68573633 None:intergenic 25.0%
!! TCATTTTGTCAAATCATTAC+CGG + chr3_3:68573692-68573711 None:intergenic 25.0%
!! TCATTTTCTCAAATCATAAC+CGG + chr3_3:68573766-68573785 None:intergenic 25.0%
!! GAATATTTCATGGTTTTTCA+AGG - chr3_3:68573914-68573933 Msa0467330:CDS 25.0%
!! TAATGAGTACTTTGTTATAC+AGG - chr3_3:68574034-68574053 Msa0467330:intron 25.0%
!! TTAAAGGTTTTCTGTTAGTT+TGG - chr3_3:68574426-68574445 Msa0467330:intron 25.0%
! TTTGAGCGAATAGATTTATT+AGG - chr3_3:68574593-68574612 Msa0467330:CDS 25.0%
! TTGAGCGAATAGATTTATTA+GGG - chr3_3:68574594-68574613 Msa0467330:CDS 25.0%
!!! TAGAAGGTTGTCATTTTATA+GGG + chr3_3:68574637-68574656 None:intergenic 25.0%
!!! TTAGAAGGTTGTCATTTTAT+AGG + chr3_3:68574638-68574657 None:intergenic 25.0%
TTTCTAATCCAAAGAAAGAG+AGG + chr3_3:68571258-68571277 None:intergenic 30.0%
GCTACTGTAAACAATGTATT+AGG - chr3_3:68571325-68571344 Msa0467330:three_prime_UTR 30.0%
GAAAAGATTACAAGAATGCA+TGG + chr3_3:68571587-68571606 None:intergenic 30.0%
! TTCGGTGTAATTATATGTGT+CGG - chr3_3:68571690-68571709 Msa0467330:CDS 30.0%
! CATTTTTCTAACGAAGTAGT+TGG - chr3_3:68571839-68571858 Msa0467330:intron 30.0%
GACGAAGAAATATTGAGAAT+TGG - chr3_3:68572126-68572145 Msa0467330:intron 30.0%
ATTGTTGTGATATTTGTGTG+AGG + chr3_3:68572207-68572226 None:intergenic 30.0%
AATATCACAACAATAGCAGT+TGG - chr3_3:68572213-68572232 Msa0467330:intron 30.0%
AGTTTGTGTTCTTCAAAAAC+TGG + chr3_3:68572443-68572462 None:intergenic 30.0%
TTAAATGCTCACCCTTATTA+TGG - chr3_3:68572474-68572493 Msa0467330:intron 30.0%
TATGGATATACTAAAGGAGA+CGG - chr3_3:68572492-68572511 Msa0467330:intron 30.0%
CGAAGTAAAGCATATTCAAT+TGG + chr3_3:68572525-68572544 None:intergenic 30.0%
! CAATTTTCTTTGTTGAAGGA+AGG + chr3_3:68572551-68572570 None:intergenic 30.0%
! TCATAACGGAATAATGTGTT+CGG + chr3_3:68572579-68572598 None:intergenic 30.0%
CATCAAACATACTGTCATAA+CGG + chr3_3:68572593-68572612 None:intergenic 30.0%
TAGGTATTAATAGCCATCAT+CGG + chr3_3:68572804-68572823 None:intergenic 30.0%
ACCTATATCTGAAAGACATT+GGG - chr3_3:68572860-68572879 Msa0467330:CDS 30.0%
!!! GGACTTTTTTACACTACTAA+TGG - chr3_3:68572882-68572901 Msa0467330:CDS 30.0%
!!! CTTTTTTACACTACTAATGG+AGG - chr3_3:68572885-68572904 Msa0467330:CDS 30.0%
TACACCATTGCATAATTTAG+AGG - chr3_3:68573559-68573578 Msa0467330:CDS 30.0%
AAGTCCTCTAAATTATGCAA+TGG + chr3_3:68573566-68573585 None:intergenic 30.0%
!! GTTGAAAATTACGTCACTTT+TGG + chr3_3:68573615-68573634 None:intergenic 30.0%
ATCACAAAAAAAGGTGAACT+GGG + chr3_3:68573941-68573960 None:intergenic 30.0%
AATCACAAAAAAAGGTGAAC+TGG + chr3_3:68573942-68573961 None:intergenic 30.0%
! AGCTTTTCTTCTATTGCATT+TGG - chr3_3:68574219-68574238 Msa0467330:intron 30.0%
!!! CTAAAAAGGCATCATTTTTC+TGG + chr3_3:68574345-68574364 None:intergenic 30.0%
ATTGCAATTGCAAGCTAAAA+AGG + chr3_3:68574359-68574378 None:intergenic 30.0%
AATTGCAATTCAATGGTCAT+TGG - chr3_3:68574370-68574389 Msa0467330:intron 30.0%
GTAATTTACACTCTCAAGAT+AGG - chr3_3:68574495-68574514 Msa0467330:intron 30.0%
AAGTAAGGACTAAACTTAGA+AGG + chr3_3:68574653-68574672 None:intergenic 30.0%
TAATCCAAAGAAAGAGAGGA+AGG + chr3_3:68571254-68571273 None:intergenic 35.0%
ACATAGTATAACGCTGAACA+TGG + chr3_3:68571429-68571448 None:intergenic 35.0%
! GTAATTATATGTGTCGGTGT+CGG - chr3_3:68571696-68571715 Msa0467330:CDS 35.0%
ACTTCGTTAGAAAAATGTCC+AGG + chr3_3:68571836-68571855 None:intergenic 35.0%
!! AATTGAGTTAGAGTGTTGCA+AGG - chr3_3:68571879-68571898 Msa0467330:intron 35.0%
TATGATGTAGGTGCATTTGT+GGG - chr3_3:68571943-68571962 Msa0467330:intron 35.0%
! GCAACAATATTTGAAGCTGA+TGG + chr3_3:68572000-68572019 None:intergenic 35.0%
! ATGAAGGTTTGAAGCAACTA+AGG + chr3_3:68572310-68572329 None:intergenic 35.0%
GTTCCATGATGAGTTAAAAG+TGG + chr3_3:68572400-68572419 None:intergenic 35.0%
TTGTGTTCTTCAAAAACTGG+AGG + chr3_3:68572440-68572459 None:intergenic 35.0%
TGACAGTATGTTTGATGCTA+TGG - chr3_3:68572596-68572615 Msa0467330:intron 35.0%
!! AGGAGAGTACTTAATGATTC+AGG - chr3_3:68572765-68572784 Msa0467330:CDS 35.0%
GACCTATATCTGAAAGACAT+TGG - chr3_3:68572859-68572878 Msa0467330:CDS 35.0%
CCTATATCTGAAAGACATTG+GGG - chr3_3:68572861-68572880 Msa0467330:CDS 35.0%
! TTCTTCGAAGTCTTTTTGTG+TGG - chr3_3:68572956-68572975 Msa0467330:CDS 35.0%
! TCTTTTTGTGTGGCTAAAGA+TGG - chr3_3:68572966-68572985 Msa0467330:CDS 35.0%
CATTATAAGCATAAGAGGCA+TGG + chr3_3:68573106-68573125 None:intergenic 35.0%
CAAAAAATGAATAGTGTGGG+AGG - chr3_3:68573134-68573153 Msa0467330:CDS 35.0%
TCTAACAGCGTTAACTTACT+TGG + chr3_3:68573203-68573222 None:intergenic 35.0%
CTGTTAGAATTAGTTGCAGT+TGG - chr3_3:68573215-68573234 Msa0467330:CDS 35.0%
! CTCAACAAGTAGCTTCTTTT+AGG - chr3_3:68573325-68573344 Msa0467330:CDS 35.0%
AGTGCTTCATAGCTCATTAA+CGG + chr3_3:68573637-68573656 None:intergenic 35.0%
CTGAATGTAACCTTATGTGT+CGG - chr3_3:68573791-68573810 Msa0467330:CDS 35.0%
! GTACTTTGTTATACAGGTCA+TGG - chr3_3:68574040-68574059 Msa0467330:intron 35.0%
! TATCAGTTCTAACTTGAGCA+CGG - chr3_3:68574185-68574204 Msa0467330:intron 35.0%
TAGAAGAGAATGCATAGTGA+AGG + chr3_3:68574290-68574309 None:intergenic 35.0%
!! CTCTTCTACTAGTCTACTTT+TGG - chr3_3:68574302-68574321 Msa0467330:intron 35.0%
AGCTTGCAATTGCAATTCAA+TGG - chr3_3:68574363-68574382 Msa0467330:intron 35.0%
GATTTGTGTTCCATCTTGTA+TGG - chr3_3:68574456-68574475 Msa0467330:intron 35.0%
TCCATCTTGTATGGTGTATT+TGG - chr3_3:68574465-68574484 Msa0467330:intron 35.0%
CCATCTTGTATGGTGTATTT+GGG - chr3_3:68574466-68574485 Msa0467330:intron 35.0%
CATCTTGTATGGTGTATTTG+GGG - chr3_3:68574467-68574486 Msa0467330:intron 35.0%
TTTCACATGTACTCCAGTGT+TGG - chr3_3:68571151-68571170 Msa0467330:three_prime_UTR 40.0%
! CCTTTTCTTTTGTCCAACAC+TGG + chr3_3:68571167-68571186 None:intergenic 40.0%
! CCAGTGTTGGACAAAAGAAA+AGG - chr3_3:68571164-68571183 Msa0467330:three_prime_UTR 40.0%
AAGAATAGGTATGGCAGCTT+CGG + chr3_3:68571205-68571224 None:intergenic 40.0%
TGTTCCTTCCTCTCTTTCTT+TGG - chr3_3:68571247-68571266 Msa0467330:three_prime_UTR 40.0%
TTGAGATTGACAAAGGAGTG+TGG + chr3_3:68571360-68571379 None:intergenic 40.0%
TGAGCATAATCGATGAAGCA+CGG - chr3_3:68571616-68571635 Msa0467330:CDS 40.0%
TAATCGATGAAGCACGGATA+CGG - chr3_3:68571622-68571641 Msa0467330:CDS 40.0%
GTATGATGTAGGTGCATTTG+TGG - chr3_3:68571942-68571961 Msa0467330:intron 40.0%
ATGATGTAGGTGCATTTGTG+GGG - chr3_3:68571944-68571963 Msa0467330:intron 40.0%
AATTGGAGAATCTCCATCAG+TGG - chr3_3:68572143-68572162 Msa0467330:intron 40.0%
AACAATAGCAGTTGGAAGTG+AGG - chr3_3:68572221-68572240 Msa0467330:intron 40.0%
CAAGAACACGAGCAACATTT+GGG + chr3_3:68572260-68572279 None:intergenic 40.0%
ACAAGAACACGAGCAACATT+TGG + chr3_3:68572261-68572280 None:intergenic 40.0%
AAACTTTGACGCGGAAATGA+AGG + chr3_3:68572326-68572345 None:intergenic 40.0%
AGGCTTAGGGATTAAATCCA+TGG + chr3_3:68572361-68572380 None:intergenic 40.0%
TAGAAGGAGGAAAAGGCTTA+GGG + chr3_3:68572374-68572393 None:intergenic 40.0%
TTAAAAGTGGCTGTAGAAGG+AGG + chr3_3:68572387-68572406 None:intergenic 40.0%
GAGTTAAAAGTGGCTGTAGA+AGG + chr3_3:68572390-68572409 None:intergenic 40.0%
!!! CAGCCACTTTTAACTCATCA+TGG - chr3_3:68572394-68572413 Msa0467330:intron 40.0%
TCTTCAAAAACTGGAGGACT+TGG + chr3_3:68572434-68572453 None:intergenic 40.0%
CAGTATGTTTGATGCTATGG+TGG - chr3_3:68572599-68572618 Msa0467330:intron 40.0%
TCATTGTCACAGAAACTGGT+TGG - chr3_3:68572670-68572689 Msa0467330:intron 40.0%
! GCATTTTCTAAACTAGCGTC+CGG + chr3_3:68572720-68572739 None:intergenic 40.0%
CCCCAATGTCTTTCAGATAT+AGG + chr3_3:68572864-68572883 None:intergenic 40.0%
TGAAAAGATGGAAGCTGGTT+TGG - chr3_3:68572998-68573017 Msa0467330:CDS 40.0%
ACATCATTGGGGAAATAGCA+AGG + chr3_3:68573077-68573096 None:intergenic 40.0%
! CATGGCTTTTCACATCATTG+GGG + chr3_3:68573088-68573107 None:intergenic 40.0%
! GCATGGCTTTTCACATCATT+GGG + chr3_3:68573089-68573108 None:intergenic 40.0%
TACAGCTATGATAACTACCG+AGG - chr3_3:68573175-68573194 Msa0467330:CDS 40.0%
CGTTAACTTACTTGGATCCT+CGG + chr3_3:68573195-68573214 None:intergenic 40.0%
! AGAAGCTACTTGTTGAGTGT+AGG + chr3_3:68573322-68573341 None:intergenic 40.0%
CAACATTGACACGTTAACAC+CGG - chr3_3:68573744-68573763 Msa0467330:CDS 40.0%
AATTGACACGTGTCAGACAT+TGG - chr3_3:68573834-68573853 Msa0467330:CDS 40.0%
ATTGACACGTGTCAGACATT+GGG - chr3_3:68573835-68573854 Msa0467330:CDS 40.0%
CATGGATCATGTGTATATGC+AGG - chr3_3:68574058-68574077 Msa0467330:intron 40.0%
GATCATGTGTATATGCAGGA+AGG - chr3_3:68574062-68574081 Msa0467330:intron 40.0%
! ATCAGTTCTAACTTGAGCAC+GGG - chr3_3:68574186-68574205 Msa0467330:intron 40.0%
TTTGGACCTGTAAGTCCTAT+TGG - chr3_3:68574237-68574256 Msa0467330:intron 40.0%
AACTTCAATCCAGCACCAAT+AGG + chr3_3:68574255-68574274 None:intergenic 40.0%
CCCAAATACACCATACAAGA+TGG + chr3_3:68574469-68574488 None:intergenic 40.0%
GAAGCTGCCATACCTATTCT+TGG - chr3_3:68571204-68571223 Msa0467330:three_prime_UTR 45.0%
!! GAAAAGGGGGTACCAAGAAT+AGG + chr3_3:68571219-68571238 None:intergenic 45.0%
! AGGAACAGTGTAGCGGAAAA+GGG + chr3_3:68571234-68571253 None:intergenic 45.0%
! AAGGAACAGTGTAGCGGAAA+AGG + chr3_3:68571235-68571254 None:intergenic 45.0%
AAGAGTGAGCAATAACGCAC+TGG + chr3_3:68571305-68571324 None:intergenic 45.0%
! TTCTTGGATTAGACGTGTCC+TGG + chr3_3:68571741-68571760 None:intergenic 45.0%
TATGAAGCACGGACACTTCT+TGG + chr3_3:68571757-68571776 None:intergenic 45.0%
!! AAGAAGTGTCCGTGCTTCAT+AGG - chr3_3:68571756-68571775 Msa0467330:intron 45.0%
GCATATGCTCCTATGAAGCA+CGG + chr3_3:68571768-68571787 None:intergenic 45.0%
TGATGTAGGTGCATTTGTGG+GGG - chr3_3:68571945-68571964 Msa0467330:intron 45.0%
GCATTTGTGGGGGTAAACAT+TGG - chr3_3:68571955-68571974 Msa0467330:intron 45.0%
CTACAAGCCCTATCAAACAC+CGG - chr3_3:68572078-68572097 Msa0467330:intron 45.0%
TTCAACGCCGGTGTTTGATA+GGG + chr3_3:68572088-68572107 None:intergenic 45.0%
CTGTGAAGATGATTCATGGC+AGG + chr3_3:68572285-68572304 None:intergenic 45.0%
GGCACTGTGAAGATGATTCA+TGG + chr3_3:68572289-68572308 None:intergenic 45.0%
! GGGATTAAATCCATGGACTG+AGG + chr3_3:68572354-68572373 None:intergenic 45.0%
GTAGAAGGAGGAAAAGGCTT+AGG + chr3_3:68572375-68572394 None:intergenic 45.0%
CGGATCATTGTCACAGAAAC+TGG - chr3_3:68572666-68572685 Msa0467330:intron 45.0%
! GAAACTGGTTGGCCACATTT+AGG - chr3_3:68572681-68572700 Msa0467330:intron 45.0%
TCGTTAGGTCCACCTAAATG+TGG + chr3_3:68572696-68572715 None:intergenic 45.0%
TTTAGGTGGACCTAACGAAC+CGG - chr3_3:68572698-68572717 Msa0467330:intron 45.0%
TTCTCCTAGTCAACCGATGA+TGG - chr3_3:68572788-68572807 Msa0467330:CDS 45.0%
! ATAGCCATCATCGGTTGACT+AGG + chr3_3:68572795-68572814 None:intergenic 45.0%
AACTGTGCAGCTATTCAAGC+TGG - chr3_3:68573047-68573066 Msa0467330:CDS 45.0%
ACTGTGCAGCTATTCAAGCT+GGG - chr3_3:68573048-68573067 Msa0467330:CDS 45.0%
! GGCATGGCTTTTCACATCAT+TGG + chr3_3:68573090-68573109 None:intergenic 45.0%
!! CACTTTTGGGTGCGAATTTC+TGG + chr3_3:68573601-68573620 None:intergenic 45.0%
CTGGAACACAACATTGACAC+CGG - chr3_3:68573670-68573689 Msa0467330:CDS 45.0%
!! CTTATGTGTCGGTGTTGTGT+CGG - chr3_3:68573802-68573821 Msa0467330:CDS 45.0%
! ACACCTTCGATCAGAAGTGT+CGG - chr3_3:68573859-68573878 Msa0467330:CDS 45.0%
GCAGTAGAAGACAACAAACG+AGG - chr3_3:68574549-68574568 Msa0467330:intron 45.0%
!! GGGGGTACCAAGAATAGGTA+TGG + chr3_3:68571214-68571233 None:intergenic 50.0%
! GAACAGTGTAGCGGAAAAGG+GGG + chr3_3:68571232-68571251 None:intergenic 50.0%
! GGAACAGTGTAGCGGAAAAG+GGG + chr3_3:68571233-68571252 None:intergenic 50.0%
GAGAGGAAGGAACAGTGTAG+CGG + chr3_3:68571241-68571260 None:intergenic 50.0%
ATGAAGCACGGATACGGACA+CGG - chr3_3:68571628-68571647 Msa0467330:CDS 50.0%
CACAACACATGTCCTACACC+AGG - chr3_3:68571720-68571739 Msa0467330:intron 50.0%
GATTAGACGTGTCCTGGTGT+AGG + chr3_3:68571735-68571754 None:intergenic 50.0%
CTTCAACGCCGGTGTTTGAT+AGG + chr3_3:68572089-68572108 None:intergenic 50.0%
ATCCATGTTGCAGCCACTGA+TGG + chr3_3:68572159-68572178 None:intergenic 50.0%
GTGGCTGTAGAAGGAGGAAA+AGG + chr3_3:68572381-68572400 None:intergenic 50.0%
! ACTGGTTGGCCACATTTAGG+TGG - chr3_3:68572684-68572703 Msa0467330:intron 50.0%
! AAACTAGCGTCCGGTTCGTT+AGG + chr3_3:68572711-68572730 None:intergenic 50.0%
TTGTGTGGCTAAAGATGGCG+CGG - chr3_3:68572971-68572990 Msa0467330:CDS 50.0%
GACGCTGAAAAGATGGAAGC+TGG - chr3_3:68572993-68573012 Msa0467330:CDS 50.0%
!! AGATGGAAGCTGGTTTGGAC+TGG - chr3_3:68573003-68573022 Msa0467330:CDS 50.0%
!! GATGGAAGCTGGTTTGGACT+GGG - chr3_3:68573004-68573023 Msa0467330:CDS 50.0%
GAATAGCTGCACAGTTTGCC+CGG + chr3_3:68573043-68573062 None:intergenic 50.0%
!! AGCACTGACACAACACAGAC+TGG - chr3_3:68573651-68573670 Msa0467330:CDS 50.0%
CGACACAACACCGACACATA+AGG + chr3_3:68573804-68573823 None:intergenic 50.0%
! AGTTCTAACTTGAGCACGGG+TGG - chr3_3:68574189-68574208 Msa0467330:intron 50.0%
CCAGCACCAATAGGACTTAC+AGG + chr3_3:68574246-68574265 None:intergenic 50.0%
CCTGTAAGTCCTATTGGTGC+TGG - chr3_3:68574243-68574262 Msa0467330:intron 50.0%
! TGGCAGCTTCGGTTGAGTTG+AGG + chr3_3:68571194-68571213 None:intergenic 55.0%
! ACCGGCGTTGAAGTCCTTGT+TGG - chr3_3:68572096-68572115 Msa0467330:intron 55.0%
GCCAACAAGGACTTCAACGC+CGG + chr3_3:68572100-68572119 None:intergenic 55.0%
CTCCATCAGTGGCTGCAACA+TGG - chr3_3:68572154-68572173 Msa0467330:intron 55.0%
!! GAGGCGTCGAAACTTTGACG+CGG + chr3_3:68572335-68572354 None:intergenic 55.0%
AGTTTCGACGCCTCAGTCCA+TGG - chr3_3:68572341-68572360 Msa0467330:intron 55.0%
! GCACCGACACTTCTGATCGA+AGG + chr3_3:68573865-68573884 None:intergenic 55.0%
AACTTGAGCACGGGTGGTGA+TGG - chr3_3:68574195-68574214 Msa0467330:intron 55.0%
ACTTGAGCACGGGTGGTGAT+GGG - chr3_3:68574196-68574215 Msa0467330:intron 55.0%
CTTCGTCGGTGACGCCAACA+AGG + chr3_3:68572113-68572132 None:intergenic 60.0%
TGGCGCGGACGCTGAAAAGA+TGG - chr3_3:68572986-68573005 Msa0467330:CDS 60.0%
!! GCTGGTTTGGACTGGGCTTG+CGG - chr3_3:68573011-68573030 Msa0467330:CDS 60.0%
! TTGGACTGGGCTTGCGGAGA+AGG - chr3_3:68573017-68573036 Msa0467330:CDS 60.0%
ACTGGGCTTGCGGAGAAGGC+CGG - chr3_3:68573021-68573040 Msa0467330:CDS 65.0%
CTGGGCTTGCGGAGAAGGCC+GGG - chr3_3:68573022-68573041 Msa0467330:CDS 70.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 68571115 68574797 68571115 ID=Msa0467330;Name=Msa0467330
chr3_3 mRNA 68571115 68574797 68571115 ID=Msa0467330-mRNA-1;Parent=Msa0467330;Name=Msa0467330-mRNA-1;_AED=0.01;_eAED=0.01;_QI=42|1|1|1|1|1|4|459|538
chr3_3 exon 68571115 68571721 68571115 ID=Msa0467330-mRNA-1:exon:15907;Parent=Msa0467330-mRNA-1
chr3_3 exon 68571829 68571856 68571829 ID=Msa0467330-mRNA-1:exon:15906;Parent=Msa0467330-mRNA-1
chr3_3 exon 68572709 68573959 68572709 ID=Msa0467330-mRNA-1:exon:15905;Parent=Msa0467330-mRNA-1
chr3_3 exon 68574566 68574797 68574566 ID=Msa0467330-mRNA-1:exon:15904;Parent=Msa0467330-mRNA-1
chr3_3 five_prime_UTR 68574756 68574797 68574756 ID=Msa0467330-mRNA-1:five_prime_utr;Parent=Msa0467330-mRNA-1
chr3_3 CDS 68574566 68574755 68574566 ID=Msa0467330-mRNA-1:cds;Parent=Msa0467330-mRNA-1
chr3_3 CDS 68572709 68573959 68572709 ID=Msa0467330-mRNA-1:cds;Parent=Msa0467330-mRNA-1
chr3_3 CDS 68571829 68571856 68571829 ID=Msa0467330-mRNA-1:cds;Parent=Msa0467330-mRNA-1
chr3_3 CDS 68571574 68571721 68571574 ID=Msa0467330-mRNA-1:cds;Parent=Msa0467330-mRNA-1
chr3_3 three_prime_UTR 68571115 68571573 68571115 ID=Msa0467330-mRNA-1:three_prime_utr;Parent=Msa0467330-mRNA-1
Gene Sequence

>Msa0467330

ATGTACTCCAGTGTTGGACAAAAGAAAAGGACAACCTCAACTCAACCGAAGCTGCCATACCTATTCTTGGTACCCCCTTTTCCGCTACACTGTTCCTTCCTCTCTTTCTTTGGATTAGAAACTATGAAGCTTCAAAAATGGCTCACCAGTGCGTTATTGCTCACTCTTGCTACTGTAAACAATGTATTAGGTGCATTTGTGGGGGTAAACATTGGCACTCATGTTACTGATCTACCATCAGCTTCAAATATTGTTGCTATTCTAAAATCTCATCAAATTACTCATGTGCGTCTCTATGATGCTAATGCTCACATGCTACAAGCCCTATCAAACACCGGCGTTGAAGTCCTTGTTGGCGTCACCGACGAAGAAATATTGAGAATTGGAGAATCTCCATCAGTGGCTGCAACATGGATTAGCAAAAACGTAGCTGCTTACATGCCTCACACAAATATCACAACAATAGCAGTTGGAAGTGAGGTTCTAACTTCAATCCCAAATGTTGCTCGTGTTCTTGTTCCTGCCATGAATCATCTTCACAGTGCCTTAGTTGCTTCAAACCTTCATTTCCGCGTCAAAGTTTCGACGCCTCAGTCCATGGATTTAATCCCTAAGCCTTTTCCTCCTTCTACAGCCACTTTTAACTCATCATGGAACTCAACAATTCACCAAGTCCTCCAGTTTTTGAAGAACACAAACTCTTCTTATATGTTAAATGCTCACCCTTATTATGGATATACTAAAGGAGACGGCATTTTTCCAATTGAATATGCTTTACTTCGATCCCTTCCTTCAACAAAGAAAATTGTTGATCCGAACACATTATTCCGTTATGACAGTATGTTTGATGCTATGGTGGATGCTACTTATTATTCAATACAAGCATTAAATTTCAATGATATACGGATCATTGTCACAGAAACTGGTTGGCCACATTTAGGTGGACCTAACGAACCGGACGCTAGTTTAGAAAATGCTGAGACCTACAATAATAATTTGATTAGGAGAGTACTTAATGATTCAGGTTCTCCTAGTCAACCGATGATGGCTATTAATACCTACTTATATGAATTGTTTGATGAAGATAAAAGAATAGGACCTATATCTGAAAGACATTGGGGACTTTTTTACACTACTAATGGAGGTAGTGTTTACCCTTTGAGTTTTAGTTCTTCTAACAAGATTTTCGGAAATTCTTCGAAGTCTTTTTGTGTGGCTAAAGATGGCGCGGACGCTGAAAAGATGGAAGCTGGTTTGGACTGGGCTTGCGGAGAAGGCCGGGCAAACTGTGCAGCTATTCAAGCTGGGAGACCTTGCTATTTCCCCAATGATGTGAAAAGCCATGCCTCTTATGCTTATAATGATTATTATCAAAAAATGAATAGTGTGGGAGGAACATGTGACTTTGATGATACAGCTATGATAACTACCGAGGATCCAAGTCATGGATCATGTGTATATGCAGGAAGTTCTAACTTGAGCACGGGTGGTGATGGGAGCTTTTCTTCTATTGCATTTGGACCTGTAAGTCCTATTGGTGCTGGATTGAAGTTGCAACTGTCTAGCCTTCACTATGCATTCTCTTCTACTAGTCTACTTTTGGCTCTGATGTTGTAA
Protein sequence

>Msa0467330

MYSSVGQKKRTTSTQPKLPYLFLVPPFPLHCSFLSFFGLETMKLQKWLTSALLLTLATVNNVLGAFVGVNIGTHVTDLPSASNIVAILKSHQITHVRLYDANAHMLQALSNTGVEVLVGVTDEEILRIGESPSVAATWISKNVAAYMPHTNITTIAVGSEVLTSIPNVARVLVPAMNHLHSALVASNLHFRVKVSTPQSMDLIPKPFPPSTATFNSSWNSTIHQVLQFLKNTNSSYMLNAHPYYGYTKGDGIFPIEYALLRSLPSTKKIVDPNTLFRYDSMFDAMVDATYYSIQALNFNDIRIIVTETGWPHLGGPNEPDASLENAETYNNNLIRRVLNDSGSPSQPMMAINTYLYELFDEDKRIGPISERHWGLFYTTNGGSVYPLSFSSSNKIFGNSSKSFCVAKDGADAEKMEAGLDWACGEGRANCAAIQAGRPCYFPNDVKSHASYAYNDYYQKMNSVGGTCDFDDTAMITTEDPSHGSCVYAGSSNLSTGGDGSFSSIAFGPVSPIGAGLKLQLSSLHYAFSSTSLLLALML*