Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1277490 | XP_003627492.2 | 95.783 | 498 | 15 | 2 | 1 | 498 | 1 | 492 | 0.0 | 984 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1277490 | sp|Q8GYY5|RGAP3_ARATH | 52.964 | 506 | 171 | 12 | 1 | 498 | 1 | 447 | 2.71e-159 | 462 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1277490 | G7L9Z1 | 95.783 | 498 | 15 | 2 | 1 | 498 | 1 | 492 | 0.0 | 984 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0007970 | Msa1277490 | 0.811272 | 7.606445e-51 | -8.615850e-47 |
| Msa0012940 | Msa1277490 | 0.800308 | 1.531563e-48 | -8.615850e-47 |
| Msa0014570 | Msa1277490 | 0.812898 | 3.362820e-51 | -8.615850e-47 |
| Msa0016670 | Msa1277490 | 0.805924 | 1.055574e-49 | -8.615850e-47 |
| Msa0025330 | Msa1277490 | 0.807154 | 5.805082e-50 | -8.615850e-47 |
| Msa0032320 | Msa1277490 | 0.814631 | 1.395987e-51 | -8.615850e-47 |
| Msa0032370 | Msa1277490 | 0.812818 | 3.501096e-51 | -8.615850e-47 |
| Msa0032920 | Msa1277490 | -0.820416 | 6.939902e-53 | -8.615850e-47 |
| Msa0036130 | Msa1277490 | 0.822921 | 1.828475e-53 | -8.615850e-47 |
| Msa0039250 | Msa1277490 | 0.831047 | 2.082236e-55 | -8.615850e-47 |
| Msa0049790 | Msa1277490 | 0.826329 | 2.880355e-54 | -8.615850e-47 |
| Msa0052870 | Msa1277490 | 0.804530 | 2.066563e-49 | -8.615850e-47 |
| Msa0056450 | Msa1277490 | 0.808449 | 3.080654e-50 | -8.615850e-47 |
| Msa0061340 | Msa1277490 | 0.828249 | 9.983067e-55 | -8.615850e-47 |
| Msa0072900 | Msa1277490 | 0.807662 | 4.530993e-50 | -8.615850e-47 |
| Msa0081520 | Msa1277490 | 0.827407 | 1.591437e-54 | -8.615850e-47 |
| Msa0093850 | Msa1277490 | 0.812551 | 4.005404e-51 | -8.615850e-47 |
| Msa0094850 | Msa1277490 | 0.824320 | 8.604956e-54 | -8.615850e-47 |
| Msa0097850 | Msa1277490 | 0.811082 | 8.362002e-51 | -8.615850e-47 |
| Msa0108390 | Msa1277490 | 0.832743 | 7.941238e-56 | -8.615850e-47 |
| Msa0115090 | Msa1277490 | 0.803429 | 3.500979e-49 | -8.615850e-47 |
| Msa0615420 | Msa1277490 | 0.807764 | 4.309312e-50 | -8.615850e-47 |
| Msa0626450 | Msa1277490 | 0.812254 | 4.651308e-51 | -8.615850e-47 |
| Msa0626490 | Msa1277490 | 0.814499 | 1.493782e-51 | -8.615850e-47 |
| Msa0626510 | Msa1277490 | 0.807428 | 5.079117e-50 | -8.615850e-47 |
| Msa0638480 | Msa1277490 | 0.817386 | 3.388404e-52 | -8.615850e-47 |
| Msa0661320 | Msa1277490 | 0.800564 | 1.358477e-48 | -8.615850e-47 |
| Msa0664600 | Msa1277490 | 0.814722 | 1.333333e-51 | -8.615850e-47 |
| Msa0664910 | Msa1277490 | 0.829307 | 5.539154e-55 | -8.615850e-47 |
| Msa0691050 | Msa1277490 | 0.821964 | 3.051195e-53 | -8.615850e-47 |
| Msa0692880 | Msa1277490 | 0.834312 | 3.224031e-56 | -8.615850e-47 |
| Msa0698640 | Msa1277490 | 0.807404 | 5.138985e-50 | -8.615850e-47 |
| Msa0701280 | Msa1277490 | 0.801591 | 8.376532e-49 | -8.615850e-47 |
| Msa0702340 | Msa1277490 | 0.825003 | 5.939664e-54 | -8.615850e-47 |
| Msa0702590 | Msa1277490 | 0.828006 | 1.142801e-54 | -8.615850e-47 |
| Msa0702660 | Msa1277490 | 0.822583 | 2.191843e-53 | -8.615850e-47 |
| Msa0703680 | Msa1277490 | 0.808691 | 2.734980e-50 | -8.615850e-47 |
| Msa0737570 | Msa1277490 | 0.831181 | 1.931020e-55 | -8.615850e-47 |
| Msa0751260 | Msa1277490 | 0.807567 | 4.744804e-50 | -8.615850e-47 |
| Msa0766360 | Msa1277490 | 0.807032 | 6.160246e-50 | -8.615850e-47 |
| Msa0799000 | Msa1277490 | 0.804745 | 1.864189e-49 | -8.615850e-47 |
| Msa0806300 | Msa1277490 | 0.829292 | 5.584777e-55 | -8.615850e-47 |
| Msa0815960 | Msa1277490 | 0.816910 | 4.333699e-52 | -8.615850e-47 |
| Msa0835970 | Msa1277490 | 0.811901 | 5.552128e-51 | -8.615850e-47 |
| Msa0130240 | Msa1277490 | 0.835944 | 1.249097e-56 | -8.615850e-47 |
| Msa0133720 | Msa1277490 | 0.835446 | 1.670066e-56 | -8.615850e-47 |
| Msa0133820 | Msa1277490 | 0.828549 | 8.452898e-55 | -8.615850e-47 |
| Msa0138360 | Msa1277490 | 0.820416 | 6.938541e-53 | -8.615850e-47 |
| Msa0144360 | Msa1277490 | 0.846648 | 1.903960e-59 | -8.615850e-47 |
| Msa0146740 | Msa1277490 | 0.800855 | 1.184933e-48 | -8.615850e-47 |
| Msa0147980 | Msa1277490 | 0.805043 | 1.615250e-49 | -8.615850e-47 |
| Msa0152400 | Msa1277490 | 0.821490 | 3.927722e-53 | -8.615850e-47 |
| Msa0160130 | Msa1277490 | 0.805262 | 1.453484e-49 | -8.615850e-47 |
| Msa0165270 | Msa1277490 | 0.817727 | 2.838826e-52 | -8.615850e-47 |
| Msa0173890 | Msa1277490 | 0.846404 | 2.218169e-59 | -8.615850e-47 |
| Msa0181230 | Msa1277490 | 0.844101 | 9.310149e-59 | -8.615850e-47 |
| Msa0188150 | Msa1277490 | 0.805760 | 1.142814e-49 | -8.615850e-47 |
| Msa0212990 | Msa1277490 | 0.801390 | 9.212045e-49 | -8.615850e-47 |
| Msa0221000 | Msa1277490 | 0.817370 | 3.415100e-52 | -8.615850e-47 |
| Msa0233730 | Msa1277490 | 0.812115 | 4.986503e-51 | -8.615850e-47 |
| Msa1224840 | Msa1277490 | 0.823789 | 1.146382e-53 | -8.615850e-47 |
| Msa1231550 | Msa1277490 | 0.804944 | 1.694003e-49 | -8.615850e-47 |
| Msa1235250 | Msa1277490 | 0.803126 | 4.045604e-49 | -8.615850e-47 |
| Msa1236240 | Msa1277490 | 0.959558 | 1.419113e-117 | -8.615850e-47 |
| Msa1252850 | Msa1277490 | -0.810364 | 1.195566e-50 | -8.615850e-47 |
| Msa1258340 | Msa1277490 | 0.803752 | 3.000243e-49 | -8.615850e-47 |
| Msa1262960 | Msa1277490 | 0.807221 | 5.619645e-50 | -8.615850e-47 |
| Msa1264710 | Msa1277490 | 0.805859 | 1.089136e-49 | -8.615850e-47 |
| Msa1269890 | Msa1277490 | 0.802387 | 5.747339e-49 | -8.615850e-47 |
| Msa1274280 | Msa1277490 | 0.811681 | 6.200546e-51 | -8.615850e-47 |
| Msa1276660 | Msa1277490 | 0.855730 | 5.184849e-62 | -8.615850e-47 |
| Msa1277490 | Msa1279140 | -0.801123 | 1.044416e-48 | -8.615850e-47 |
| Msa1277490 | Msa1298370 | 0.824483 | 7.875724e-54 | -8.615850e-47 |
| Msa1277490 | Msa1302060 | 0.807524 | 4.845693e-50 | -8.615850e-47 |
| Msa1277490 | Msa1331590 | 0.800798 | 1.217144e-48 | -8.615850e-47 |
| Msa1277490 | Msa1348090 | 0.840875 | 6.678949e-58 | -8.615850e-47 |
| Msa1277490 | Msa1356830 | 0.809646 | 1.707204e-50 | -8.615850e-47 |
| Msa1277490 | Msa1360980 | 0.819201 | 1.315296e-52 | -8.615850e-47 |
| Msa1277490 | Msa1364470 | -0.821232 | 4.503740e-53 | -8.615850e-47 |
| Msa1277490 | Msa1369150 | 0.808462 | 3.060702e-50 | -8.615850e-47 |
| Msa1277490 | Msa1371520 | 0.816935 | 4.278545e-52 | -8.615850e-47 |
| Msa1277490 | Msa1385890 | 0.803609 | 3.213052e-49 | -8.615850e-47 |
| Msa1277490 | Msa1386710 | 0.839315 | 1.705619e-57 | -8.615850e-47 |
| Msa1277490 | Msa1408620 | -0.814511 | 1.484705e-51 | -8.615850e-47 |
| Msa1277490 | Msa1423350 | 0.811295 | 7.518411e-51 | -8.615850e-47 |
| Msa1277490 | Msa1423880 | 0.802595 | 5.206000e-49 | -8.615850e-47 |
| Msa1277490 | Msa1437940 | 0.814269 | 1.678642e-51 | -8.615850e-47 |
| Msa1277490 | Msa1439610 | 0.808652 | 2.787157e-50 | -8.615850e-47 |
| Msa1277490 | Msa1440960 | 0.807645 | 4.569057e-50 | -8.615850e-47 |
| Msa1277490 | Msa1443930 | 0.802082 | 6.642407e-49 | -8.615850e-47 |
| Msa1277490 | Msa1445190 | 0.826509 | 2.609389e-54 | -8.615850e-47 |
| Msa1277490 | Msa1459460 | 0.808051 | 3.745109e-50 | -8.615850e-47 |
| Msa0365100 | Msa1277490 | 0.804463 | 2.134137e-49 | -8.615850e-47 |
| Msa0378720 | Msa1277490 | 0.824915 | 6.231615e-54 | -8.615850e-47 |
| Msa0381290 | Msa1277490 | 0.809541 | 1.798437e-50 | -8.615850e-47 |
| Msa0403660 | Msa1277490 | 0.824789 | 6.672387e-54 | -8.615850e-47 |
| Msa0410500 | Msa1277490 | 0.807097 | 5.968376e-50 | -8.615850e-47 |
| Msa0417880 | Msa1277490 | 0.815977 | 7.012309e-52 | -8.615850e-47 |
| Msa0428240 | Msa1277490 | 0.814940 | 1.192377e-51 | -8.615850e-47 |
| Msa0447370 | Msa1277490 | 0.809917 | 1.493122e-50 | -8.615850e-47 |
| Msa0467430 | Msa1277490 | 0.810750 | 9.870084e-51 | -8.615850e-47 |
| Msa0469160 | Msa1277490 | 0.811460 | 6.922801e-51 | -8.615850e-47 |
| Msa0474730 | Msa1277490 | 0.816458 | 5.472736e-52 | -8.615850e-47 |
| Msa0475790 | Msa1277490 | 0.808233 | 3.425733e-50 | -8.615850e-47 |
| Msa0479200 | Msa1277490 | 0.810235 | 1.275141e-50 | -8.615850e-47 |
| Msa1010070 | Msa1277490 | 0.812594 | 3.919074e-51 | -8.615850e-47 |
| Msa1016620 | Msa1277490 | 0.812118 | 4.978468e-51 | -8.615850e-47 |
| Msa1020510 | Msa1277490 | 0.816427 | 5.561122e-52 | -8.615850e-47 |
| Msa1028350 | Msa1277490 | 0.810662 | 1.030948e-50 | -8.615850e-47 |
| Msa1031930 | Msa1277490 | 0.819680 | 1.022868e-52 | -8.615850e-47 |
| Msa1038080 | Msa1277490 | 0.823200 | 1.574623e-53 | -8.615850e-47 |
| Msa1047870 | Msa1277490 | 0.818824 | 1.602377e-52 | -8.615850e-47 |
| Msa1048920 | Msa1277490 | 0.806120 | 9.596338e-50 | -8.615850e-47 |
| Msa1050910 | Msa1277490 | 0.808441 | 3.092113e-50 | -8.615850e-47 |
| Msa1079230 | Msa1277490 | 0.820185 | 7.837342e-53 | -8.615850e-47 |
| Msa1085330 | Msa1277490 | 0.810150 | 1.329847e-50 | -8.615850e-47 |
| Msa1102770 | Msa1277490 | 0.811368 | 7.249789e-51 | -8.615850e-47 |
| Msa0253290 | Msa1277490 | 0.803362 | 3.614920e-49 | -8.615850e-47 |
| Msa0261160 | Msa1277490 | 0.802725 | 4.894270e-49 | -8.615850e-47 |
| Msa0261340 | Msa1277490 | 0.800048 | 1.730021e-48 | -8.615850e-47 |
| Msa0277450 | Msa1277490 | 0.832504 | 9.102704e-56 | -8.615850e-47 |
| Msa0292120 | Msa1277490 | 0.810155 | 1.326783e-50 | -8.615850e-47 |
| Msa0297790 | Msa1277490 | 0.802237 | 6.171288e-49 | -8.615850e-47 |
| Msa0300270 | Msa1277490 | 0.839279 | 1.742378e-57 | -8.615850e-47 |
| Msa0300320 | Msa1277490 | 0.851740 | 7.287776e-61 | -8.615850e-47 |
| Msa0300690 | Msa1277490 | 0.831133 | 1.983574e-55 | -8.615850e-47 |
| Msa0307570 | Msa1277490 | 0.802845 | 4.624205e-49 | -8.615850e-47 |
| Msa0317160 | Msa1277490 | 0.826561 | 2.535566e-54 | -8.615850e-47 |
| Msa0335800 | Msa1277490 | 0.810843 | 9.421387e-51 | -8.615850e-47 |
| Msa0337700 | Msa1277490 | 0.822579 | 2.196436e-53 | -8.615850e-47 |
| Msa0341690 | Msa1277490 | 0.820346 | 7.199454e-53 | -8.615850e-47 |
| Msa0345330 | Msa1277490 | 0.822248 | 2.621512e-53 | -8.615850e-47 |
| Msa0345410 | Msa1277490 | 0.811577 | 6.530901e-51 | -8.615850e-47 |
| Msa1124110 | Msa1277490 | 0.814522 | 1.476366e-51 | -8.615850e-47 |
| Msa1135270 | Msa1277490 | 0.823418 | 1.400213e-53 | -8.615850e-47 |
| Msa1137570 | Msa1277490 | 0.803053 | 4.188024e-49 | -8.615850e-47 |
| Msa1139890 | Msa1277490 | 0.812319 | 4.500686e-51 | -8.615850e-47 |
| Msa1168950 | Msa1277490 | 0.809057 | 2.283373e-50 | -8.615850e-47 |
| Msa1169040 | Msa1277490 | 0.805294 | 1.430657e-49 | -8.615850e-47 |
| Msa1174530 | Msa1277490 | 0.819891 | 9.152716e-53 | -8.615850e-47 |
| Msa1176060 | Msa1277490 | 0.916853 | 1.080314e-85 | -8.615850e-47 |
| Msa1199830 | Msa1277490 | -0.810827 | 9.499194e-51 | -8.615850e-47 |
| Msa1208160 | Msa1277490 | 0.827960 | 1.172171e-54 | -8.615850e-47 |
| Msa1208430 | Msa1277490 | 0.825440 | 4.683096e-54 | -8.615850e-47 |
| Msa1212380 | Msa1277490 | 0.809475 | 1.858203e-50 | -8.615850e-47 |
| Msa0513160 | Msa1277490 | 0.822672 | 2.089811e-53 | -8.615850e-47 |
| Msa0518030 | Msa1277490 | 0.840808 | 6.956309e-58 | -8.615850e-47 |
| Msa0527190 | Msa1277490 | 0.817663 | 2.934173e-52 | -8.615850e-47 |
| Msa0556010 | Msa1277490 | 0.848277 | 6.792375e-60 | -8.615850e-47 |
| Msa0567260 | Msa1277490 | 0.804529 | 2.067684e-49 | -8.615850e-47 |
| Msa0573380 | Msa1277490 | 0.857499 | 1.565745e-62 | -8.615850e-47 |
| Msa0574890 | Msa1277490 | 0.819935 | 8.944467e-53 | -8.615850e-47 |
| Msa0581690 | Msa1277490 | 0.815382 | 9.515983e-52 | -8.615850e-47 |
| Msa0856920 | Msa1277490 | 0.817645 | 2.961161e-52 | -8.615850e-47 |
| Msa0861510 | Msa1277490 | 0.838366 | 3.001372e-57 | -8.615850e-47 |
| Msa0861530 | Msa1277490 | 0.842255 | 2.890548e-58 | -8.615850e-47 |
| Msa0861600 | Msa1277490 | 0.832937 | 7.107275e-56 | -8.615850e-47 |
| Msa0868160 | Msa1277490 | 0.803980 | 2.690925e-49 | -8.615850e-47 |
| Msa0900620 | Msa1277490 | 0.812388 | 4.347994e-51 | -8.615850e-47 |
| Msa0926470 | Msa1277490 | 0.809102 | 2.233749e-50 | -8.615850e-47 |
| Msa0930780 | Msa1277490 | 0.823626 | 1.251770e-53 | -8.615850e-47 |
| Msa0944660 | Msa1277490 | 0.806844 | 6.751588e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1277490 | MtrunA17_Chr8g0346171 | 95.783 | 498 | 15 | 2 | 1 | 498 | 1 | 492 | 0.0 | 984 |
| Msa1277490 | MtrunA17_Chr7g0266501 | 70.769 | 260 | 75 | 1 | 88 | 346 | 69 | 328 | 8.58e-138 | 405 |
| Msa1277490 | MtrunA17_Chr1g0196181 | 65.203 | 296 | 96 | 2 | 77 | 365 | 23 | 318 | 1.11e-135 | 400 |
| Msa1277490 | MtrunA17_Chr2g0321541 | 68.889 | 270 | 81 | 2 | 85 | 351 | 42 | 311 | 3.14e-131 | 388 |
| Msa1277490 | MtrunA17_Chr4g0026251 | 61.565 | 294 | 98 | 3 | 85 | 377 | 65 | 344 | 4.10e-128 | 377 |
| Msa1277490 | MtrunA17_Chr7g0268531 | 70.270 | 259 | 71 | 2 | 93 | 345 | 32 | 290 | 2.78e-122 | 365 |
| Msa1277490 | MtrunA17_Chr7g0250591 | 65.217 | 161 | 54 | 1 | 154 | 314 | 14 | 172 | 6.52e-72 | 228 |
| Msa1277490 | MtrunA17_Chr5g0426461 | 65.584 | 154 | 49 | 1 | 154 | 307 | 16 | 165 | 1.40e-66 | 212 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1277490 | AT2G46710.1 | 52.964 | 506 | 171 | 12 | 1 | 498 | 1 | 447 | 2.75e-160 | 462 |
| Msa1277490 | AT5G22400.1 | 71.154 | 260 | 75 | 0 | 87 | 346 | 87 | 346 | 3.11e-137 | 404 |
| Msa1277490 | AT3G11490.1 | 65.636 | 291 | 94 | 1 | 91 | 375 | 67 | 357 | 1.71e-135 | 399 |
| Msa1277490 | AT4G03100.1 | 68.401 | 269 | 73 | 2 | 88 | 344 | 39 | 307 | 2.36e-133 | 393 |
| Msa1277490 | AT1G08340.1 | 70.130 | 231 | 69 | 0 | 115 | 345 | 1 | 231 | 4.56e-121 | 358 |
Find 114 sgRNAs with CRISPR-Local
Find 220 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAAAACCAGTTTGCAATAT+TGG | 0.157516 | 8_3:+13037690 | Msa1277490:CDS |
| TTCATCTTTCTTCTTGTTGT+TGG | 0.240192 | 8_3:-13037518 | None:intergenic |
| TTGTTTATCCGGCTTGATTA+AGG | 0.253081 | 8_3:+13039096 | Msa1277490:CDS |
| AAAGGACCACTTTCGTATCT+TGG | 0.283881 | 8_3:-13040622 | None:intergenic |
| TGATGCAGTGTGAAGGTATT+TGG | 0.306995 | 8_3:+13038766 | Msa1277490:intron |
| TTTACAATGGCAAGACTTGC+AGG | 0.317689 | 8_3:-13040763 | None:intergenic |
| TAGAGAGAAAATGAAGAGTT+TGG | 0.320950 | 8_3:-13037225 | None:intergenic |
| ATGAAAATGTGATATGGTTT+TGG | 0.329026 | 8_3:-13037297 | None:intergenic |
| GATCTCGAACGAATGCTTCT+TGG | 0.347459 | 8_3:-13039033 | None:intergenic |
| ACTTGAATGAAAATGTGATA+TGG | 0.353168 | 8_3:-13037303 | None:intergenic |
| CGCACAATGTTAACAATTGT+AGG | 0.355043 | 8_3:+13040915 | Msa1277490:three_prime_UTR |
| GTGTTCCAACAATTCTTCTA+AGG | 0.355399 | 8_3:+13038836 | Msa1277490:CDS |
| ATCGATGTTCATTGTTTATC+CGG | 0.358798 | 8_3:+13039085 | Msa1277490:CDS |
| TTGTTGGTTACTTGTGCAAC+AGG | 0.362492 | 8_3:-13037502 | None:intergenic |
| TGCATCCTTAGAAGAATTGT+TGG | 0.370772 | 8_3:-13038841 | None:intergenic |
| AGACTTGCAGGCTTCTTAGA+TGG | 0.380145 | 8_3:-13040751 | None:intergenic |
| GGGAAATTATGAAAGACAAT+TGG | 0.381230 | 8_3:-13037196 | None:intergenic |
| GAGGGAAGATGTTTCTTCCT+TGG | 0.381917 | 8_3:+13037762 | Msa1277490:CDS |
| TGACTGGGCAATCAATTTGA+TGG | 0.385583 | 8_3:+13039770 | Msa1277490:CDS |
| CAGAAGCTGCTCTTCTTGAC+TGG | 0.401025 | 8_3:+13039754 | Msa1277490:CDS |
| TGCATGAATCAATGCAGTTA+AGG | 0.415964 | 8_3:-13040272 | None:intergenic |
| GCATGAATCAATGCAGTTAA+GGG | 0.418194 | 8_3:-13040271 | None:intergenic |
| AGGAGGAAATTCATCATTGC+AGG | 0.421427 | 8_3:-13040401 | None:intergenic |
| ATTATGAAAGACAATTGGAT+TGG | 0.424236 | 8_3:-13037191 | None:intergenic |
| TTTCTTCCTTGGATATTAGC+TGG | 0.437424 | 8_3:+13037773 | Msa1277490:CDS |
| AGTCATTTGAGTTAACTAAC+AGG | 0.439899 | 8_3:-13037422 | None:intergenic |
| GGCTTGCTCAATTGAAATAC+CGG | 0.440128 | 8_3:-13040730 | None:intergenic |
| CTATATCCAATATTGCAAAC+TGG | 0.444268 | 8_3:-13037696 | None:intergenic |
| ACTACAACTGCAACCGCATC+AGG | 0.458627 | 8_3:+13040874 | Msa1277490:three_prime_UTR |
| TCCTCTTTGTTGAAGTTGAA+AGG | 0.462988 | 8_3:-13040421 | None:intergenic |
| TGGTTTAGAGAGCTTCCAAC+TGG | 0.465706 | 8_3:+13039645 | Msa1277490:CDS |
| CTGGCACTAGGTACCCTTGT+AGG | 0.471703 | 8_3:-13037883 | None:intergenic |
| CAGTGTTCTTATGATGATAG+AGG | 0.479488 | 8_3:+13038808 | Msa1277490:CDS |
| TTCGAGATCAGTTAAACAAA+GGG | 0.480003 | 8_3:+13039047 | Msa1277490:CDS |
| TTATGAAAGACAATTGGATT+GGG | 0.480560 | 8_3:-13037190 | None:intergenic |
| TTTAAGTTGTAACAGCTACT+TGG | 0.481948 | 8_3:+13041035 | Msa1277490:three_prime_UTR |
| GGAAGGAAGAGGAGAAGCTT+GGG | 0.485623 | 8_3:+13040792 | Msa1277490:CDS |
| GCTCCATTCTATTCTTCCTA+AGG | 0.486204 | 8_3:-13040521 | None:intergenic |
| AATGAAGAGTTTGGTTGAGA+GGG | 0.486933 | 8_3:-13037216 | None:intergenic |
| GGGAAGGAAGAGGAGAAGCT+TGG | 0.491896 | 8_3:+13040791 | Msa1277490:CDS |
| GTTTCAAGACAATTCACAAA+AGG | 0.492894 | 8_3:+13037652 | Msa1277490:CDS |
| GTCAAGAAGAGCAGCTTCTG+TGG | 0.495179 | 8_3:-13039751 | None:intergenic |
| ACGGCGTGCGCAAGTTATGC+AGG | 0.495303 | 8_3:+13040704 | Msa1277490:CDS |
| GCCTTCTGAGTTTCAGCCTG+AGG | 0.495415 | 8_3:+13037858 | Msa1277490:CDS |
| TTCTCAAGGACTTCCACCTT+AGG | 0.495514 | 8_3:+13040505 | Msa1277490:CDS |
| GAATGCGCGCAACGTAGCTA+TGG | 0.499082 | 8_3:+13039827 | Msa1277490:CDS |
| GTCTTGCCATTGTAAATACT+AGG | 0.506258 | 8_3:+13040770 | Msa1277490:CDS |
| TCAAAATCATGCAACATAGC+TGG | 0.506873 | 8_3:+13037457 | Msa1277490:CDS |
| AAATGAAGAGTTTGGTTGAG+AGG | 0.509274 | 8_3:-13037217 | None:intergenic |
| TCCTTTCAACTTCAACAAAG+AGG | 0.511319 | 8_3:+13040420 | Msa1277490:CDS |
| GGTACCCTTGTAGGAACCTC+AGG | 0.515998 | 8_3:-13037874 | None:intergenic |
| TAACAAACCTGTGTCATGTT+GGG | 0.519362 | 8_3:-13039858 | None:intergenic |
| CGTAAATACCTTAATCAAGC+CGG | 0.519512 | 8_3:-13039104 | None:intergenic |
| GTTCGAGATCAGTTAAACAA+AGG | 0.524433 | 8_3:+13039046 | Msa1277490:CDS |
| CCACCTTAGGAAGAATAGAA+TGG | 0.525280 | 8_3:+13040518 | Msa1277490:CDS |
| TTGCATTGCATCACTTGCTC+CGG | 0.531461 | 8_3:-13039687 | None:intergenic |
| GCAACCGCATCAGGTATAGT+TGG | 0.532086 | 8_3:+13040883 | Msa1277490:three_prime_UTR |
| AGAAGAGCAGCTTCTGTGGA+AGG | 0.535601 | 8_3:-13039747 | None:intergenic |
| CAAAAGCAATTGTATTCTGA+AGG | 0.538997 | 8_3:+13038862 | Msa1277490:CDS |
| TGTAACTTGCAGTGTGGAGA+GGG | 0.539058 | 8_3:+13037744 | Msa1277490:CDS |
| CTACAAGGGTACCTAGTGCC+AGG | 0.543064 | 8_3:+13037884 | Msa1277490:CDS |
| CCATTCTATTCTTCCTAAGG+TGG | 0.545441 | 8_3:-13040518 | None:intergenic |
| TTCAGCCTGAGGTTCCTACA+AGG | 0.552164 | 8_3:+13037869 | Msa1277490:CDS |
| TGAAAGACAATTGGATTGGG+TGG | 0.553722 | 8_3:-13037187 | None:intergenic |
| GCCATTGTAAATACTAGGGA+AGG | 0.559174 | 8_3:+13040775 | Msa1277490:CDS |
| GCGCAAGTTATGCAGGCACC+CGG | 0.570203 | 8_3:+13040711 | Msa1277490:CDS |
| GAAGATATGACAGCGAACAT+TGG | 0.571920 | 8_3:+13040668 | Msa1277490:CDS |
| ACAACAAGAACAAGAACAAG+AGG | 0.572248 | 8_3:+13037540 | Msa1277490:CDS |
| GTCACCATGTGAACAAATTG+AGG | 0.575603 | 8_3:+13040444 | Msa1277490:CDS |
| TCTTGCCATTGTAAATACTA+GGG | 0.575822 | 8_3:+13040771 | Msa1277490:CDS |
| AGGTGAGGTAAAACACAAAG+AGG | 0.576387 | 8_3:-13037343 | None:intergenic |
| AGAAGCTGCTCTTCTTGACT+GGG | 0.576970 | 8_3:+13039755 | Msa1277490:CDS |
| GCATCCTCAATTTGTTCACA+TGG | 0.578905 | 8_3:-13040448 | None:intergenic |
| CATTGGTCACGATTGAGAAA+CGG | 0.582047 | 8_3:+13040685 | Msa1277490:CDS |
| ACCTCAGGCTGAAACTCAGA+AGG | 0.584588 | 8_3:-13037859 | None:intergenic |
| AATGGAGCGTAGAGAAACTT+CGG | 0.589113 | 8_3:+13040536 | Msa1277490:CDS |
| GTAAATACTAGGGAAGGAAG+AGG | 0.593283 | 8_3:+13040781 | Msa1277490:CDS |
| ATGTTTGAAAATGTTAACAA+AGG | 0.594976 | 8_3:+13041090 | Msa1277490:three_prime_UTR |
| GACACGTGTCTCACTTCGGT+TGG | 0.596127 | 8_3:-13037796 | None:intergenic |
| AGAGAATCAAGTACACCAGT+TGG | 0.600276 | 8_3:-13039660 | None:intergenic |
| CTACCAAAAGAAAATTCTCA+AGG | 0.605610 | 8_3:+13040491 | Msa1277490:CDS |
| TTGTAACTTGCAGTGTGGAG+AGG | 0.609827 | 8_3:+13037743 | Msa1277490:CDS |
| TCTTTGTTGAAGTTGAAAGG+AGG | 0.610113 | 8_3:-13040418 | None:intergenic |
| AGTTGGAAGCTCTCTAAACC+AGG | 0.611737 | 8_3:-13039643 | None:intergenic |
| TGGTGTTAAATAAAGCTGAA+AGG | 0.615394 | 8_3:-13037380 | None:intergenic |
| TTTCGCGCCCAACATGACAC+AGG | 0.615447 | 8_3:+13039851 | Msa1277490:CDS |
| TCCTTCCCTAGTATTTACAA+TGG | 0.616815 | 8_3:-13040776 | None:intergenic |
| GGCTATTCTCAGCAGTAATG+CGG | 0.618302 | 8_3:-13039012 | None:intergenic |
| GTCACACAAGCCATAAAACA+AGG | 0.618321 | 8_3:-13040967 | None:intergenic |
| TGCGGTTGCAGTTGTAGTTG+CGG | 0.622958 | 8_3:-13040869 | None:intergenic |
| AGTGTTCTTATGATGATAGA+GGG | 0.624124 | 8_3:+13038809 | Msa1277490:CDS |
| ATGTGACACGTGTCTCACTT+CGG | 0.625234 | 8_3:-13037800 | None:intergenic |
| TGTTGGTTACTTGTGCAACA+GGG | 0.626928 | 8_3:-13037501 | None:intergenic |
| AGGTAAAACACAAAGAGGGT+TGG | 0.626972 | 8_3:-13037338 | None:intergenic |
| ACATCCAACTATACCTGATG+CGG | 0.629151 | 8_3:-13040887 | None:intergenic |
| CATGAATCAATGCAGTTAAG+GGG | 0.629505 | 8_3:-13040270 | None:intergenic |
| AAGATTGCTCTCACATAGCA+TGG | 0.632661 | 8_3:+13040369 | Msa1277490:CDS |
| GGTTGGCCAGCTAATATCCA+AGG | 0.633161 | 8_3:-13037779 | None:intergenic |
| TCAGCCTGAGGTTCCTACAA+GGG | 0.635145 | 8_3:+13037870 | Msa1277490:CDS |
| CTTTAAATGATGCAGTGTGA+AGG | 0.637209 | 8_3:+13038759 | Msa1277490:intron |
| AGGAAATTCATCATTGCAGG+AGG | 0.637863 | 8_3:-13040398 | None:intergenic |
| TTTCCATGGATGAAGGCAGA+AGG | 0.638432 | 8_3:+13038983 | Msa1277490:intron |
| AACAAAGGGATAGTGCCACA+TGG | 0.638676 | 8_3:+13039061 | Msa1277490:CDS |
| AAGCAATTGTATTCTGAAGG+AGG | 0.641065 | 8_3:+13038865 | Msa1277490:CDS |
| GCTTGCTCAATTGAAATACC+GGG | 0.650080 | 8_3:-13040729 | None:intergenic |
| GGTGAGGTAAAACACAAAGA+GGG | 0.651496 | 8_3:-13037342 | None:intergenic |
| TGGAAGGAAGTAACTTGACA+AGG | 0.651985 | 8_3:-13039731 | None:intergenic |
| AAACAAGGCATGCATAAACA+AGG | 0.653736 | 8_3:-13040952 | None:intergenic |
| TTAACAAACCTGTGTCATGT+TGG | 0.658298 | 8_3:-13039859 | None:intergenic |
| AGAGAAACTTCGGAGCTCCG+AGG | 0.659373 | 8_3:+13040546 | Msa1277490:CDS |
| ATCTATTGTAACTTGCAGTG+TGG | 0.662855 | 8_3:+13037738 | Msa1277490:CDS |
| GTAACTCCAAGATACGAAAG+TGG | 0.671137 | 8_3:+13040616 | Msa1277490:CDS |
| TGTACTTGATTCTCTCACAC+CGG | 0.686660 | 8_3:+13039668 | Msa1277490:CDS |
| CAATGAACATCGATTCCATG+TGG | 0.724200 | 8_3:-13039076 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAGATATAAAAAATTTACC+TGG | - | chr8_3:13037905-13037924 | None:intergenic | 15.0% |
| !! | AACATGAAATTTATGTAATT+TGG | + | chr8_3:13037936-13037955 | Msa1277490:intron | 15.0% |
| !!! | TCAATTTTGTTTAGAATTTT+TGG | + | chr8_3:13038054-13038073 | Msa1277490:intron | 15.0% |
| !! | TTATTGTACTTACAATAAAA+TGG | + | chr8_3:13038344-13038363 | Msa1277490:intron | 15.0% |
| !!! | TTTTTATCATTATCTATTTC+AGG | + | chr8_3:13039620-13039639 | Msa1277490:intron | 15.0% |
| !!! | TAACTATAACTATTTTCTAA+AGG | - | chr8_3:13040643-13040662 | None:intergenic | 15.0% |
| !! | CATACTTTATCTAATTTCAA+GGG | - | chr8_3:13038221-13038240 | None:intergenic | 20.0% |
| !! | TCATACTTTATCTAATTTCA+AGG | - | chr8_3:13038222-13038241 | None:intergenic | 20.0% |
| !!! | ATTCCTCTTAAGAAAATTTT+AGG | + | chr8_3:13038244-13038263 | Msa1277490:intron | 20.0% |
| !! | AAGTACAATAAAAGATTCAT+AGG | - | chr8_3:13038335-13038354 | None:intergenic | 20.0% |
| !! | AAAATACAGATAATCAATCA+AGG | - | chr8_3:13038700-13038719 | None:intergenic | 20.0% |
| !! | AAATTACAGAACATACTTTA+AGG | - | chr8_3:13038891-13038910 | None:intergenic | 20.0% |
| !!! | ATAGTTACATGTGAATTTTA+AGG | + | chr8_3:13038947-13038966 | Msa1277490:intron | 20.0% |
| !!! | TTCAGTCAAATGAATTTTAT+AGG | - | chr8_3:13039134-13039153 | None:intergenic | 20.0% |
| !! | AAACACTAAGTTTGATTAAT+AGG | + | chr8_3:13039341-13039360 | Msa1277490:intron | 20.0% |
| !! | GGTTGAAAAATAAAAAGATA+CGG | - | chr8_3:13039457-13039476 | None:intergenic | 20.0% |
| !!! | TATCTTTTTATTTTTCAACC+TGG | + | chr8_3:13039457-13039476 | Msa1277490:intron | 20.0% |
| !! | AATGATAAAAAGATATGACA+AGG | - | chr8_3:13039611-13039630 | None:intergenic | 20.0% |
| !! | CATCTAAATTTCATATTTCA+TGG | + | chr8_3:13040009-13040028 | Msa1277490:intron | 20.0% |
| !!! | TGTATTTTTCATTTCACTTT+TGG | - | chr8_3:13040209-13040228 | None:intergenic | 20.0% |
| !! | ATGTTTGAAAATGTTAACAA+AGG | + | chr8_3:13041090-13041109 | Msa1277490:three_prime_UTR | 20.0% |
| ! | TTATGAAAGACAATTGGATT+GGG | - | chr8_3:13037193-13037212 | None:intergenic | 25.0% |
| ! | ATTATGAAAGACAATTGGAT+TGG | - | chr8_3:13037194-13037213 | None:intergenic | 25.0% |
| !!! | ATATGGTTTTGGTTAAGTAA+AGG | - | chr8_3:13037289-13037308 | None:intergenic | 25.0% |
| !! | ATGAAAATGTGATATGGTTT+TGG | - | chr8_3:13037300-13037319 | None:intergenic | 25.0% |
| ! | ACTTGAATGAAAATGTGATA+TGG | - | chr8_3:13037306-13037325 | None:intergenic | 25.0% |
| !! | GAAAGGATCTGAATATTTTA+AGG | - | chr8_3:13037366-13037385 | None:intergenic | 25.0% |
| ! | ACAGGAAGAAAAAAAATGAA+GGG | - | chr8_3:13037407-13037426 | None:intergenic | 25.0% |
| ! | AACAGGAAGAAAAAAAATGA+AGG | - | chr8_3:13037408-13037427 | None:intergenic | 25.0% |
| !!! | GTTACTTTTGATAGATTCAA+TGG | + | chr8_3:13037823-13037842 | Msa1277490:CDS | 25.0% |
| !! | AAGCCTAAAATTTTCTTAAG+AGG | - | chr8_3:13038250-13038269 | None:intergenic | 25.0% |
| !!! | AATGCTTTATTTCTTCTTGT+AGG | + | chr8_3:13038296-13038315 | Msa1277490:intron | 25.0% |
| ! | CTTACAATAAAATGGTAGAA+TGG | + | chr8_3:13038352-13038371 | Msa1277490:intron | 25.0% |
| ! | TAAATCCTGACTATTATGTA+TGG | + | chr8_3:13038505-13038524 | Msa1277490:intron | 25.0% |
| ! | TCGTATTTGTCAAATTCATT+TGG | + | chr8_3:13038917-13038936 | Msa1277490:intron | 25.0% |
| !! | TGCGTAACTTGTAAATTATT+TGG | + | chr8_3:13039189-13039208 | Msa1277490:intron | 25.0% |
| ! | CTCATAATTTACTGATAAGT+GGG | + | chr8_3:13039258-13039277 | Msa1277490:intron | 25.0% |
| ! | ACTAAGTTTGATTAATAGGA+AGG | + | chr8_3:13039345-13039364 | Msa1277490:intron | 25.0% |
| !!! | GTTGATTATTTTTCTCAAAC+TGG | + | chr8_3:13039571-13039590 | Msa1277490:intron | 25.0% |
| !! | TTTAAAACCAGAAATGTTTC+TGG | + | chr8_3:13039928-13039947 | Msa1277490:intron | 25.0% |
| ! | TGCAAACTCAGATAATAAAT+TGG | - | chr8_3:13039991-13040010 | None:intergenic | 25.0% |
| ! | GCTAATTGTACAAAATATCA+GGG | - | chr8_3:13040075-13040094 | None:intergenic | 25.0% |
| ! | TGCTAATTGTACAAAATATC+AGG | - | chr8_3:13040076-13040095 | None:intergenic | 25.0% |
| !! | GATATTTTGTACAATTAGCA+TGG | + | chr8_3:13040076-13040095 | Msa1277490:intron | 25.0% |
| ! | TAATAAGCTGAAAAATTCGA+TGG | + | chr8_3:13040114-13040133 | Msa1277490:intron | 25.0% |
| !! | CTTGAAAATGCATTTTTACA+AGG | + | chr8_3:13040815-13040834 | Msa1277490:exon | 25.0% |
| !!! | TGCATAAACAAGGTTTTAAT+CGG | - | chr8_3:13040945-13040964 | None:intergenic | 25.0% |
| GGGAAATTATGAAAGACAAT+TGG | - | chr8_3:13037199-13037218 | None:intergenic | 30.0% | |
| TAGAGAGAAAATGAAGAGTT+TGG | - | chr8_3:13037228-13037247 | None:intergenic | 30.0% | |
| !! | TTTTGGTTAAGTAAAGGTTG+TGG | - | chr8_3:13037283-13037302 | None:intergenic | 30.0% |
| !!! | GATCTGAATATTTTAAGGTG+AGG | - | chr8_3:13037361-13037380 | None:intergenic | 30.0% |
| ! | TGGTGTTAAATAAAGCTGAA+AGG | - | chr8_3:13037383-13037402 | None:intergenic | 30.0% |
| GAAGAAAAAAAATGAAGGGT+TGG | - | chr8_3:13037403-13037422 | None:intergenic | 30.0% | |
| ! | AGTCATTTGAGTTAACTAAC+AGG | - | chr8_3:13037425-13037444 | None:intergenic | 30.0% |
| !! | TGCATGATTTTGATCGAAAA+AGG | - | chr8_3:13037450-13037469 | None:intergenic | 30.0% |
| ! | TTCATCTTTCTTCTTGTTGT+TGG | - | chr8_3:13037521-13037540 | None:intergenic | 30.0% |
| GTTTCAAGACAATTCACAAA+AGG | + | chr8_3:13037652-13037671 | Msa1277490:CDS | 30.0% | |
| TCAAAACCAGTTTGCAATAT+TGG | + | chr8_3:13037690-13037709 | Msa1277490:CDS | 30.0% | |
| CTATATCCAATATTGCAAAC+TGG | - | chr8_3:13037699-13037718 | None:intergenic | 30.0% | |
| ! | GATAGATTCAATGGTTTTCT+TGG | + | chr8_3:13037832-13037851 | Msa1277490:CDS | 30.0% |
| TAAAAAATTTACCTGGCACT+AGG | - | chr8_3:13037898-13037917 | None:intergenic | 30.0% | |
| AAGCTGATGTAGATATTAAC+AGG | + | chr8_3:13038377-13038396 | Msa1277490:intron | 30.0% | |
| ! | GTTTTCCATACATAATAGTC+AGG | - | chr8_3:13038513-13038532 | None:intergenic | 30.0% |
| GTATGGAAAACACTGTTAAA+CGG | + | chr8_3:13038522-13038541 | Msa1277490:intron | 30.0% | |
| ! | AAACTAGTTTGTCAGATTTG+TGG | + | chr8_3:13038657-13038676 | Msa1277490:intron | 30.0% |
| AGTGTTCTTATGATGATAGA+GGG | + | chr8_3:13038809-13038828 | Msa1277490:CDS | 30.0% | |
| CAAAAGCAATTGTATTCTGA+AGG | + | chr8_3:13038862-13038881 | Msa1277490:CDS | 30.0% | |
| TTCGAGATCAGTTAAACAAA+GGG | + | chr8_3:13039047-13039066 | Msa1277490:CDS | 30.0% | |
| ATCGATGTTCATTGTTTATC+CGG | + | chr8_3:13039085-13039104 | Msa1277490:CDS | 30.0% | |
| TTAACATTTCCAAAGCCTTT+CGG | + | chr8_3:13039161-13039180 | Msa1277490:intron | 30.0% | |
| ! | CCAACGCATACAAAATTTTA+AGG | - | chr8_3:13039232-13039251 | None:intergenic | 30.0% |
| ! | CCTTAAAATTTTGTATGCGT+TGG | + | chr8_3:13039229-13039248 | Msa1277490:intron | 30.0% |
| GCTCATAATTTACTGATAAG+TGG | + | chr8_3:13039257-13039276 | Msa1277490:intron | 30.0% | |
| ! | CTGTTCATTTTCAACAACAT+CGG | - | chr8_3:13039796-13039815 | None:intergenic | 30.0% |
| TAATCAACCAGAAACATTTC+TGG | - | chr8_3:13039938-13039957 | None:intergenic | 30.0% | |
| CTACCAAAAGAAAATTCTCA+AGG | + | chr8_3:13040491-13040510 | Msa1277490:CDS | 30.0% | |
| ! | AGTCCTTGAGAATTTTCTTT+TGG | - | chr8_3:13040497-13040516 | None:intergenic | 30.0% |
| !!! | TTCAGATCTTTTTCAAGTGA+TGG | + | chr8_3:13040592-13040611 | Msa1277490:CDS | 30.0% |
| TCTTGCCATTGTAAATACTA+GGG | + | chr8_3:13040771-13040790 | Msa1277490:CDS | 30.0% | |
| !!! | TTTATGCATGCCTTGTTTTA+TGG | + | chr8_3:13040957-13040976 | Msa1277490:three_prime_UTR | 30.0% |
| !! | TTTAAGTTGTAACAGCTACT+TGG | + | chr8_3:13041035-13041054 | Msa1277490:three_prime_UTR | 30.0% |
| AATGAAGAGTTTGGTTGAGA+GGG | - | chr8_3:13037219-13037238 | None:intergenic | 35.0% | |
| AAATGAAGAGTTTGGTTGAG+AGG | - | chr8_3:13037220-13037239 | None:intergenic | 35.0% | |
| TTGTGGTGAAAAATGGAAGA+AGG | - | chr8_3:13037266-13037285 | None:intergenic | 35.0% | |
| GTAAAGGTTGTGGTGAAAAA+TGG | - | chr8_3:13037273-13037292 | None:intergenic | 35.0% | |
| TCAAAATCATGCAACATAGC+TGG | + | chr8_3:13037457-13037476 | Msa1277490:CDS | 35.0% | |
| ACAACAAGAACAAGAACAAG+AGG | + | chr8_3:13037540-13037559 | Msa1277490:CDS | 35.0% | |
| ! | CAATGATGATGATGATGATG+AGG | + | chr8_3:13037603-13037622 | Msa1277490:CDS | 35.0% |
| !!! | CTGGTTTTGATGATTGTTGT+TGG | - | chr8_3:13037680-13037699 | None:intergenic | 35.0% |
| ! | ATCTATTGTAACTTGCAGTG+TGG | + | chr8_3:13037738-13037757 | Msa1277490:CDS | 35.0% |
| TTTCTTCCTTGGATATTAGC+TGG | + | chr8_3:13037773-13037792 | Msa1277490:CDS | 35.0% | |
| TTAGTATTTGTTTGCGTCTC+TGG | + | chr8_3:13038116-13038135 | Msa1277490:intron | 35.0% | |
| !! | CCTTGCATTGTATTTTGAGT+TGG | - | chr8_3:13038600-13038619 | None:intergenic | 35.0% |
| CCAACTCAAAATACAATGCA+AGG | + | chr8_3:13038597-13038616 | Msa1277490:intron | 35.0% | |
| CACACTGCATCATTTAAAGA+CGG | - | chr8_3:13038758-13038777 | None:intergenic | 35.0% | |
| CTTTAAATGATGCAGTGTGA+AGG | + | chr8_3:13038759-13038778 | Msa1277490:intron | 35.0% | |
| CAGTGTTCTTATGATGATAG+AGG | + | chr8_3:13038808-13038827 | Msa1277490:CDS | 35.0% | |
| GTGTTCCAACAATTCTTCTA+AGG | + | chr8_3:13038836-13038855 | Msa1277490:CDS | 35.0% | |
| TGCATCCTTAGAAGAATTGT+TGG | - | chr8_3:13038844-13038863 | None:intergenic | 35.0% | |
| ! | AAGCAATTGTATTCTGAAGG+AGG | + | chr8_3:13038865-13038884 | Msa1277490:CDS | 35.0% |
| GTCTAATTTCATGCTTTCCA+TGG | + | chr8_3:13038969-13038988 | Msa1277490:intron | 35.0% | |
| GTTCGAGATCAGTTAAACAA+AGG | + | chr8_3:13039046-13039065 | Msa1277490:CDS | 35.0% | |
| ! | TTGTTTATCCGGCTTGATTA+AGG | + | chr8_3:13039096-13039115 | Msa1277490:CDS | 35.0% |
| CGTAAATACCTTAATCAAGC+CGG | - | chr8_3:13039107-13039126 | None:intergenic | 35.0% | |
| AAGTTACGCAAATAACCGAA+AGG | - | chr8_3:13039179-13039198 | None:intergenic | 35.0% | |
| !!! | AATTTTGTATGCGTTGGCTA+TGG | + | chr8_3:13039235-13039254 | Msa1277490:intron | 35.0% |
| TATCTATTAGAACAGCAACC+AGG | - | chr8_3:13039478-13039497 | None:intergenic | 35.0% | |
| ATCATTATCTATTTCAGGCC+TGG | + | chr8_3:13039625-13039644 | Msa1277490:intron | 35.0% | |
| TAACAAACCTGTGTCATGTT+GGG | - | chr8_3:13039861-13039880 | None:intergenic | 35.0% | |
| TTAACAAACCTGTGTCATGT+TGG | - | chr8_3:13039862-13039881 | None:intergenic | 35.0% | |
| GTACAATTAGCATGGCATAT+CGG | + | chr8_3:13040084-13040103 | Msa1277490:intron | 35.0% | |
| ACTTTCTTGTGAAATCCAGA+TGG | + | chr8_3:13040243-13040262 | Msa1277490:intron | 35.0% | |
| CATGAATCAATGCAGTTAAG+GGG | - | chr8_3:13040273-13040292 | None:intergenic | 35.0% | |
| GCATGAATCAATGCAGTTAA+GGG | - | chr8_3:13040274-13040293 | None:intergenic | 35.0% | |
| TGCATGAATCAATGCAGTTA+AGG | - | chr8_3:13040275-13040294 | None:intergenic | 35.0% | |
| TCTTTGTTGAAGTTGAAAGG+AGG | - | chr8_3:13040421-13040440 | None:intergenic | 35.0% | |
| TCCTTTCAACTTCAACAAAG+AGG | + | chr8_3:13040420-13040439 | Msa1277490:CDS | 35.0% | |
| TCCTCTTTGTTGAAGTTGAA+AGG | - | chr8_3:13040424-13040443 | None:intergenic | 35.0% | |
| GTCTTGCCATTGTAAATACT+AGG | + | chr8_3:13040770-13040789 | Msa1277490:CDS | 35.0% | |
| TCCTTCCCTAGTATTTACAA+TGG | - | chr8_3:13040779-13040798 | None:intergenic | 35.0% | |
| CGCACAATGTTAACAATTGT+AGG | + | chr8_3:13040915-13040934 | Msa1277490:three_prime_UTR | 35.0% | |
| AAACAAGGCATGCATAAACA+AGG | - | chr8_3:13040955-13040974 | None:intergenic | 35.0% | |
| ! | TGAAAGACAATTGGATTGGG+TGG | - | chr8_3:13037190-13037209 | None:intergenic | 40.0% |
| TGAAAAATGGAAGAAGGAGG+AGG | - | chr8_3:13037260-13037279 | None:intergenic | 40.0% | |
| TGGTGAAAAATGGAAGAAGG+AGG | - | chr8_3:13037263-13037282 | None:intergenic | 40.0% | |
| AGGTAAAACACAAAGAGGGT+TGG | - | chr8_3:13037341-13037360 | None:intergenic | 40.0% | |
| GGTGAGGTAAAACACAAAGA+GGG | - | chr8_3:13037345-13037364 | None:intergenic | 40.0% | |
| AGGTGAGGTAAAACACAAAG+AGG | - | chr8_3:13037346-13037365 | None:intergenic | 40.0% | |
| ! | TGTTGGTTACTTGTGCAACA+GGG | - | chr8_3:13037504-13037523 | None:intergenic | 40.0% |
| ! | TTGTTGGTTACTTGTGCAAC+AGG | - | chr8_3:13037505-13037524 | None:intergenic | 40.0% |
| GTCTCTGGTATAGAAGATTC+TGG | + | chr8_3:13038131-13038150 | Msa1277490:intron | 40.0% | |
| TTTCGACATGTTAATCTGCG+TGG | + | chr8_3:13038444-13038463 | Msa1277490:intron | 40.0% | |
| ACATGTTAATCTGCGTGGTA+AGG | + | chr8_3:13038449-13038468 | Msa1277490:intron | 40.0% | |
| !! | TGATGCAGTGTGAAGGTATT+TGG | + | chr8_3:13038766-13038785 | Msa1277490:intron | 40.0% |
| TTCATGCTTTCCATGGATGA+AGG | + | chr8_3:13038976-13038995 | Msa1277490:intron | 40.0% | |
| !! | CAATGAACATCGATTCCATG+TGG | - | chr8_3:13039079-13039098 | None:intergenic | 40.0% |
| AGATGTTTGATCACGGACTT+CGG | - | chr8_3:13039412-13039431 | None:intergenic | 40.0% | |
| AGAGAATCAAGTACACCAGT+TGG | - | chr8_3:13039663-13039682 | None:intergenic | 40.0% | |
| TGTACTTGATTCTCTCACAC+CGG | + | chr8_3:13039668-13039687 | Msa1277490:CDS | 40.0% | |
| TGGAAGGAAGTAACTTGACA+AGG | - | chr8_3:13039734-13039753 | None:intergenic | 40.0% | |
| TGACTGGGCAATCAATTTGA+TGG | + | chr8_3:13039770-13039789 | Msa1277490:CDS | 40.0% | |
| GTAAATGAGCGAAACGAGAT+TGG | - | chr8_3:13039969-13039988 | None:intergenic | 40.0% | |
| AAGATTGCTCTCACATAGCA+TGG | + | chr8_3:13040369-13040388 | Msa1277490:CDS | 40.0% | |
| AGGAAATTCATCATTGCAGG+AGG | - | chr8_3:13040401-13040420 | None:intergenic | 40.0% | |
| AGGAGGAAATTCATCATTGC+AGG | - | chr8_3:13040404-13040423 | None:intergenic | 40.0% | |
| GTCACCATGTGAACAAATTG+AGG | + | chr8_3:13040444-13040463 | Msa1277490:CDS | 40.0% | |
| ! | GCATCCTCAATTTGTTCACA+TGG | - | chr8_3:13040451-13040470 | None:intergenic | 40.0% |
| CCATTCTATTCTTCCTAAGG+TGG | - | chr8_3:13040521-13040540 | None:intergenic | 40.0% | |
| CCACCTTAGGAAGAATAGAA+TGG | + | chr8_3:13040518-13040537 | Msa1277490:CDS | 40.0% | |
| GCTCCATTCTATTCTTCCTA+AGG | - | chr8_3:13040524-13040543 | None:intergenic | 40.0% | |
| AATGGAGCGTAGAGAAACTT+CGG | + | chr8_3:13040536-13040555 | Msa1277490:CDS | 40.0% | |
| !!! | GTCTCGATTCCTTTTTTCCT+CGG | - | chr8_3:13040566-13040585 | None:intergenic | 40.0% |
| GTAACTCCAAGATACGAAAG+TGG | + | chr8_3:13040616-13040635 | Msa1277490:CDS | 40.0% | |
| AAAGGACCACTTTCGTATCT+TGG | - | chr8_3:13040625-13040644 | None:intergenic | 40.0% | |
| GAAGATATGACAGCGAACAT+TGG | + | chr8_3:13040668-13040687 | Msa1277490:CDS | 40.0% | |
| CATTGGTCACGATTGAGAAA+CGG | + | chr8_3:13040685-13040704 | Msa1277490:CDS | 40.0% | |
| GCTTGCTCAATTGAAATACC+GGG | - | chr8_3:13040732-13040751 | None:intergenic | 40.0% | |
| ! | GGCTTGCTCAATTGAAATAC+CGG | - | chr8_3:13040733-13040752 | None:intergenic | 40.0% |
| TTTACAATGGCAAGACTTGC+AGG | - | chr8_3:13040766-13040785 | None:intergenic | 40.0% | |
| GCCATTGTAAATACTAGGGA+AGG | + | chr8_3:13040775-13040794 | Msa1277490:CDS | 40.0% | |
| GTAAATACTAGGGAAGGAAG+AGG | + | chr8_3:13040781-13040800 | Msa1277490:CDS | 40.0% | |
| ACATCCAACTATACCTGATG+CGG | - | chr8_3:13040890-13040909 | None:intergenic | 40.0% | |
| GTCACACAAGCCATAAAACA+AGG | - | chr8_3:13040970-13040989 | None:intergenic | 40.0% | |
| ! | TTGTAACTTGCAGTGTGGAG+AGG | + | chr8_3:13037743-13037762 | Msa1277490:CDS | 45.0% |
| ! | TGTAACTTGCAGTGTGGAGA+GGG | + | chr8_3:13037744-13037763 | Msa1277490:CDS | 45.0% |
| GAGGGAAGATGTTTCTTCCT+TGG | + | chr8_3:13037762-13037781 | Msa1277490:CDS | 45.0% | |
| ATGTGACACGTGTCTCACTT+CGG | - | chr8_3:13037803-13037822 | None:intergenic | 45.0% | |
| AATCTGCGTGGTAAGGAACT+CGG | + | chr8_3:13038456-13038475 | Msa1277490:intron | 45.0% | |
| ! | AACCTCTCACCACTAGCTTA+AGG | - | chr8_3:13038485-13038504 | None:intergenic | 45.0% |
| TTTCCATGGATGAAGGCAGA+AGG | + | chr8_3:13038983-13039002 | Msa1277490:intron | 45.0% | |
| ATTCCTTCTGCCTTCATCCA+TGG | - | chr8_3:13038989-13039008 | None:intergenic | 45.0% | |
| GGCTATTCTCAGCAGTAATG+CGG | - | chr8_3:13039015-13039034 | None:intergenic | 45.0% | |
| GATCTCGAACGAATGCTTCT+TGG | - | chr8_3:13039036-13039055 | None:intergenic | 45.0% | |
| AACAAAGGGATAGTGCCACA+TGG | + | chr8_3:13039061-13039080 | Msa1277490:CDS | 45.0% | |
| CGCAAATAACCGAAAGGCTT+TGG | - | chr8_3:13039173-13039192 | None:intergenic | 45.0% | |
| GCTGGAGACCTATGCATAAA+TGG | + | chr8_3:13039386-13039405 | Msa1277490:intron | 45.0% | |
| GACTTCGGCCATTTATGCAT+AGG | - | chr8_3:13039397-13039416 | None:intergenic | 45.0% | |
| GAGCACGAGATGTTTGATCA+CGG | - | chr8_3:13039419-13039438 | None:intergenic | 45.0% | |
| AGTTGGAAGCTCTCTAAACC+AGG | - | chr8_3:13039646-13039665 | None:intergenic | 45.0% | |
| TGGTTTAGAGAGCTTCCAAC+TGG | + | chr8_3:13039645-13039664 | Msa1277490:CDS | 45.0% | |
| TTGCATTGCATCACTTGCTC+CGG | - | chr8_3:13039690-13039709 | None:intergenic | 45.0% | |
| AGAAGCTGCTCTTCTTGACT+GGG | + | chr8_3:13039755-13039774 | Msa1277490:CDS | 45.0% | |
| TTCTCAAGGACTTCCACCTT+AGG | + | chr8_3:13040505-13040524 | Msa1277490:CDS | 45.0% | |
| GGAAAAAAGGAATCGAGACG+AGG | + | chr8_3:13040567-13040586 | Msa1277490:CDS | 45.0% | |
| AGACTTGCAGGCTTCTTAGA+TGG | - | chr8_3:13040754-13040773 | None:intergenic | 45.0% | |
| ! | GGTTGGCCAGCTAATATCCA+AGG | - | chr8_3:13037782-13037801 | None:intergenic | 50.0% |
| ACCTCAGGCTGAAACTCAGA+AGG | - | chr8_3:13037862-13037881 | None:intergenic | 50.0% | |
| TTCAGCCTGAGGTTCCTACA+AGG | + | chr8_3:13037869-13037888 | Msa1277490:CDS | 50.0% | |
| TCAGCCTGAGGTTCCTACAA+GGG | + | chr8_3:13037870-13037889 | Msa1277490:CDS | 50.0% | |
| ACTCGGACACCTTAAGCTAG+TGG | + | chr8_3:13038473-13038492 | Msa1277490:intron | 50.0% | |
| CACCTTAAGCTAGTGGTGAG+AGG | + | chr8_3:13038480-13038499 | Msa1277490:intron | 50.0% | |
| AAGTGGGCAGTTTGTCTGAG+CGG | + | chr8_3:13039274-13039293 | Msa1277490:intron | 50.0% | |
| TACTGCATCCACTCTACAGC+TGG | + | chr8_3:13039368-13039387 | Msa1277490:intron | 50.0% | |
| ATAGGTCTCCAGCTGTAGAG+TGG | - | chr8_3:13039379-13039398 | None:intergenic | 50.0% | |
| AGAAGAGCAGCTTCTGTGGA+AGG | - | chr8_3:13039750-13039769 | None:intergenic | 50.0% | |
| GTCAAGAAGAGCAGCTTCTG+TGG | - | chr8_3:13039754-13039773 | None:intergenic | 50.0% | |
| CAGAAGCTGCTCTTCTTGAC+TGG | + | chr8_3:13039754-13039773 | Msa1277490:CDS | 50.0% | |
| TTCGGAGCTCCGAGGAAAAA+AGG | + | chr8_3:13040554-13040573 | Msa1277490:CDS | 50.0% | |
| GGAAGGAAGAGGAGAAGCTT+GGG | + | chr8_3:13040792-13040811 | Msa1277490:CDS | 50.0% | |
| TGCGGTTGCAGTTGTAGTTG+CGG | - | chr8_3:13040872-13040891 | None:intergenic | 50.0% | |
| ACTACAACTGCAACCGCATC+AGG | + | chr8_3:13040874-13040893 | Msa1277490:three_prime_UTR | 50.0% | |
| GCAACCGCATCAGGTATAGT+TGG | + | chr8_3:13040883-13040902 | Msa1277490:three_prime_UTR | 50.0% | |
| GACACGTGTCTCACTTCGGT+TGG | - | chr8_3:13037799-13037818 | None:intergenic | 55.0% | |
| GCCTTCTGAGTTTCAGCCTG+AGG | + | chr8_3:13037858-13037877 | Msa1277490:CDS | 55.0% | |
| GGTACCCTTGTAGGAACCTC+AGG | - | chr8_3:13037877-13037896 | None:intergenic | 55.0% | |
| CTGGCACTAGGTACCCTTGT+AGG | - | chr8_3:13037886-13037905 | None:intergenic | 55.0% | |
| !! | CTACAAGGGTACCTAGTGCC+AGG | + | chr8_3:13037884-13037903 | Msa1277490:CDS | 55.0% |
| GGAGTTCAGACGCTGCTAAG+CGG | + | chr8_3:13038543-13038562 | Msa1277490:intron | 55.0% | |
| AGTGGGCAGTTTGTCTGAGC+GGG | + | chr8_3:13039275-13039294 | Msa1277490:intron | 55.0% | |
| GAATGCGCGCAACGTAGCTA+TGG | + | chr8_3:13039827-13039846 | Msa1277490:CDS | 55.0% | |
| TTTCGCGCCCAACATGACAC+AGG | + | chr8_3:13039851-13039870 | Msa1277490:CDS | 55.0% | |
| CAGTTAAGGGGTCTGCCATC+TGG | - | chr8_3:13040261-13040280 | None:intergenic | 55.0% | |
| AGAGAAACTTCGGAGCTCCG+AGG | + | chr8_3:13040546-13040565 | Msa1277490:CDS | 55.0% | |
| GGGAAGGAAGAGGAGAAGCT+TGG | + | chr8_3:13040791-13040810 | Msa1277490:CDS | 55.0% | |
| GTGGGCAGTTTGTCTGAGCG+GGG | + | chr8_3:13039276-13039295 | Msa1277490:intron | 60.0% | |
| GCAGTTTGTCTGAGCGGGGA+AGG | + | chr8_3:13039280-13039299 | Msa1277490:intron | 60.0% | |
| TGAGCGGGGAAGGTTGCTCA+AGG | + | chr8_3:13039290-13039309 | Msa1277490:intron | 60.0% | |
| GAGCGGGGAAGGTTGCTCAA+GGG | + | chr8_3:13039291-13039310 | Msa1277490:intron | 60.0% | |
| ACGGCGTGCGCAAGTTATGC+AGG | + | chr8_3:13040704-13040723 | Msa1277490:CDS | 60.0% | |
| GCGCAAGTTATGCAGGCACC+CGG | + | chr8_3:13040711-13040730 | Msa1277490:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 13037183 | 13041152 | 13037183 | ID=Msa1277490;Name=Msa1277490 |
| chr8_3 | mRNA | 13037183 | 13041152 | 13037183 | ID=Msa1277490-mRNA-1;Parent=Msa1277490;Name=Msa1277490-mRNA-1;_AED=0.14;_eAED=0.14;_QI=256|1|1|1|1|1|5|333|498 |
| chr8_3 | exon | 13037183 | 13037905 | 13037183 | ID=Msa1277490-mRNA-1:exon:5169;Parent=Msa1277490-mRNA-1 |
| chr8_3 | exon | 13038774 | 13038894 | 13038774 | ID=Msa1277490-mRNA-1:exon:5170;Parent=Msa1277490-mRNA-1 |
| chr8_3 | exon | 13038998 | 13039117 | 13038998 | ID=Msa1277490-mRNA-1:exon:5171;Parent=Msa1277490-mRNA-1 |
| chr8_3 | exon | 13039642 | 13039872 | 13039642 | ID=Msa1277490-mRNA-1:exon:5172;Parent=Msa1277490-mRNA-1 |
| chr8_3 | exon | 13040262 | 13041152 | 13040262 | ID=Msa1277490-mRNA-1:exon:5173;Parent=Msa1277490-mRNA-1 |
| chr8_3 | five_prime_UTR | 13037183 | 13037438 | 13037183 | ID=Msa1277490-mRNA-1:five_prime_utr;Parent=Msa1277490-mRNA-1 |
| chr8_3 | CDS | 13037439 | 13037905 | 13037439 | ID=Msa1277490-mRNA-1:cds;Parent=Msa1277490-mRNA-1 |
| chr8_3 | CDS | 13038774 | 13038894 | 13038774 | ID=Msa1277490-mRNA-1:cds;Parent=Msa1277490-mRNA-1 |
| chr8_3 | CDS | 13038998 | 13039117 | 13038998 | ID=Msa1277490-mRNA-1:cds;Parent=Msa1277490-mRNA-1 |
| chr8_3 | CDS | 13039642 | 13039872 | 13039642 | ID=Msa1277490-mRNA-1:cds;Parent=Msa1277490-mRNA-1 |
| chr8_3 | CDS | 13040262 | 13040819 | 13040262 | ID=Msa1277490-mRNA-1:cds;Parent=Msa1277490-mRNA-1 |
| chr8_3 | three_prime_UTR | 13040820 | 13041152 | 13040820 | ID=Msa1277490-mRNA-1:three_prime_utr;Parent=Msa1277490-mRNA-1 |
| Gene Sequence |
| Protein sequence |
