Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0569280 | XP_003630362.1 | 94.809 | 655 | 19 | 2 | 1 | 655 | 1 | 640 | 0.0 | 1238 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0569280 | sp|Q9MA92|FPP3_ARATH | 43.328 | 667 | 250 | 11 | 1 | 591 | 1 | 615 | 9.34e-141 | 427 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0569280 | G7LFP4 | 94.809 | 655 | 19 | 2 | 1 | 655 | 1 | 640 | 0.0 | 1238 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006070 | Msa0569280 | 0.802968 | 4.362036e-49 | -8.615850e-47 |
| Msa0017510 | Msa0569280 | 0.804997 | 1.651220e-49 | -8.615850e-47 |
| Msa0105070 | Msa0569280 | 0.813255 | 2.807196e-51 | -8.615850e-47 |
| Msa0157290 | Msa0569280 | 0.804608 | 1.990722e-49 | -8.615850e-47 |
| Msa0201070 | Msa0569280 | 0.826930 | 2.069570e-54 | -8.615850e-47 |
| Msa0215320 | Msa0569280 | -0.814826 | 1.264247e-51 | -8.615850e-47 |
| Msa0220740 | Msa0569280 | 0.814073 | 1.855156e-51 | -8.615850e-47 |
| Msa0569280 | Msa0569500 | 0.804040 | 2.614474e-49 | -8.615850e-47 |
| Msa0569280 | Msa0673460 | 0.817136 | 3.855569e-52 | -8.615850e-47 |
| Msa0569280 | Msa0728630 | 0.805759 | 1.143096e-49 | -8.615850e-47 |
| Msa0569280 | Msa0743720 | 0.816712 | 4.800680e-52 | -8.615850e-47 |
| Msa0569280 | Msa0745790 | 0.809142 | 2.190001e-50 | -8.615850e-47 |
| Msa0569280 | Msa0766630 | 0.806150 | 9.457631e-50 | -8.615850e-47 |
| Msa0569280 | Msa0880140 | 0.807383 | 5.192450e-50 | -8.615850e-47 |
| Msa0569280 | Msa0907070 | 0.820156 | 7.961056e-53 | -8.615850e-47 |
| Msa0569280 | Msa0930460 | -0.803789 | 2.947598e-49 | -8.615850e-47 |
| Msa0569280 | Msa1014540 | 0.808711 | 2.707581e-50 | -8.615850e-47 |
| Msa0569280 | Msa1075220 | -0.807743 | 4.355238e-50 | -8.615850e-47 |
| Msa0569280 | Msa1082500 | 0.804885 | 1.742536e-49 | -8.615850e-47 |
| Msa0569280 | Msa1162550 | -0.824870 | 6.385325e-54 | -8.615850e-47 |
| Msa0569280 | Msa1205130 | 0.802045 | 6.758123e-49 | -8.615850e-47 |
| Msa0569280 | Msa1226660 | 0.822435 | 2.372927e-53 | -8.615850e-47 |
| Msa0569280 | Msa1284680 | 0.820786 | 5.707076e-53 | -8.615850e-47 |
| Msa0569280 | Msa1353470 | 0.801744 | 7.792252e-49 | -8.615850e-47 |
| Msa0569280 | Msa1362880 | 0.806051 | 9.922429e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0569280 | MtrunA17_Chr8g0384881 | 94.809 | 655 | 19 | 2 | 1 | 655 | 1 | 640 | 0.0 | 1238 |
| Msa0569280 | MtrunA17_Chr3g0130811 | 63.278 | 482 | 139 | 4 | 49 | 512 | 31 | 492 | 0.0 | 538 |
| Msa0569280 | MtrunA17_Chr3g0130811 | 56.371 | 259 | 105 | 4 | 395 | 646 | 466 | 723 | 1.98e-75 | 256 |
| Msa0569280 | MtrunA17_Chr1g0159951 | 42.475 | 598 | 248 | 8 | 2 | 524 | 3 | 579 | 4.06e-121 | 380 |
| Msa0569280 | MtrunA17_Chr1g0159951 | 36.150 | 213 | 76 | 6 | 478 | 653 | 638 | 827 | 1.77e-20 | 96.3 |
| Msa0569280 | MtrunA17_Chr3g0142411 | 44.934 | 227 | 100 | 2 | 82 | 284 | 93 | 318 | 5.99e-43 | 166 |
| Msa0569280 | MtrunA17_Chr5g0405291 | 33.876 | 307 | 172 | 4 | 1 | 284 | 1 | 299 | 4.21e-38 | 151 |
| Msa0569280 | MtrunA17_Chr1g0156371 | 37.618 | 319 | 144 | 9 | 1 | 284 | 1 | 299 | 7.81e-38 | 151 |
| Msa0569280 | MtrunA17_Chr4g0053121 | 36.275 | 306 | 114 | 5 | 1 | 276 | 1 | 255 | 9.08e-37 | 147 |
| Msa0569280 | MtrunA17_Chr5g0401911 | 32.071 | 396 | 184 | 11 | 1 | 368 | 1 | 339 | 7.36e-33 | 135 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0569280 | AT3G05270.3 | 43.328 | 667 | 250 | 11 | 1 | 591 | 1 | 615 | 9.49e-142 | 427 |
| Msa0569280 | AT3G05270.2 | 43.328 | 667 | 250 | 11 | 1 | 591 | 1 | 615 | 9.49e-142 | 427 |
| Msa0569280 | AT3G05270.1 | 43.328 | 667 | 250 | 11 | 1 | 591 | 1 | 615 | 9.49e-142 | 427 |
| Msa0569280 | AT1G21810.3 | 37.011 | 562 | 259 | 12 | 97 | 595 | 13 | 542 | 7.87e-80 | 266 |
| Msa0569280 | AT1G21810.3 | 28.826 | 281 | 135 | 9 | 397 | 650 | 381 | 623 | 9.96e-12 | 68.6 |
| Msa0569280 | AT1G21810.1 | 37.011 | 562 | 259 | 12 | 97 | 595 | 13 | 542 | 7.87e-80 | 266 |
| Msa0569280 | AT1G21810.1 | 28.826 | 281 | 135 | 9 | 397 | 650 | 381 | 623 | 9.96e-12 | 68.6 |
| Msa0569280 | AT1G77580.1 | 46.903 | 339 | 144 | 6 | 64 | 401 | 11 | 314 | 3.27e-77 | 259 |
| Msa0569280 | AT1G77580.4 | 46.903 | 339 | 144 | 6 | 64 | 401 | 11 | 314 | 5.75e-76 | 258 |
| Msa0569280 | AT1G77580.4 | 31.818 | 286 | 139 | 6 | 391 | 649 | 482 | 738 | 3.28e-19 | 92.8 |
| Msa0569280 | AT1G77580.2 | 46.903 | 339 | 144 | 6 | 64 | 401 | 45 | 348 | 9.27e-76 | 258 |
| Msa0569280 | AT1G77580.2 | 31.818 | 286 | 139 | 6 | 391 | 649 | 516 | 772 | 3.37e-19 | 92.8 |
| Msa0569280 | AT1G77580.3 | 46.903 | 339 | 144 | 6 | 64 | 401 | 45 | 348 | 9.27e-76 | 258 |
| Msa0569280 | AT1G77580.3 | 31.818 | 286 | 139 | 6 | 391 | 649 | 516 | 772 | 3.37e-19 | 92.8 |
| Msa0569280 | AT1G19835.6 | 38.264 | 311 | 143 | 7 | 1 | 284 | 1 | 289 | 3.35e-45 | 174 |
| Msa0569280 | AT1G19835.5 | 38.264 | 311 | 143 | 7 | 1 | 284 | 1 | 289 | 3.35e-45 | 174 |
| Msa0569280 | AT1G19835.3 | 38.264 | 311 | 143 | 7 | 1 | 284 | 1 | 289 | 3.35e-45 | 174 |
| Msa0569280 | AT1G19835.1 | 38.264 | 311 | 143 | 7 | 1 | 284 | 1 | 289 | 3.35e-45 | 174 |
| Msa0569280 | AT1G19835.4 | 38.264 | 311 | 143 | 7 | 1 | 284 | 1 | 289 | 3.35e-45 | 174 |
| Msa0569280 | AT1G19835.2 | 38.264 | 311 | 143 | 7 | 1 | 284 | 1 | 289 | 3.35e-45 | 174 |
| Msa0569280 | AT1G21810.2 | 33.256 | 430 | 211 | 11 | 229 | 595 | 3 | 419 | 4.07e-41 | 157 |
| Msa0569280 | AT1G21810.2 | 28.826 | 281 | 135 | 9 | 397 | 650 | 258 | 500 | 7.51e-12 | 68.6 |
| Msa0569280 | AT1G47900.3 | 35.362 | 345 | 160 | 8 | 1 | 286 | 1 | 341 | 3.04e-39 | 155 |
| Msa0569280 | AT1G47900.1 | 35.362 | 345 | 160 | 8 | 1 | 286 | 1 | 341 | 3.04e-39 | 155 |
| Msa0569280 | AT1G47900.2 | 35.362 | 345 | 160 | 8 | 1 | 286 | 1 | 341 | 3.30e-39 | 155 |
| Msa0569280 | AT4G36120.2 | 35.016 | 317 | 155 | 7 | 1 | 284 | 1 | 299 | 2.29e-36 | 147 |
| Msa0569280 | AT4G36120.1 | 35.016 | 317 | 155 | 7 | 1 | 284 | 1 | 299 | 2.29e-36 | 147 |
| Msa0569280 | AT2G23360.1 | 39.604 | 202 | 99 | 4 | 106 | 284 | 51 | 252 | 4.28e-21 | 99.0 |
Find 126 sgRNAs with CRISPR-Local
Find 272 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATAAAGACATTCTATAATT+TGG | 0.160369 | 4_1:-71157959 | None:intergenic |
| AACTATCTCCTTCTTTGTTT+TGG | 0.200345 | 4_1:-71156722 | None:intergenic |
| CTGCTCACACTCTTGCTTCT+TGG | 0.211444 | 4_1:-71157742 | None:intergenic |
| TCTCTCAAGTTCGAATCTTC+TGG | 0.215588 | 4_1:-71155861 | None:intergenic |
| AAGGCTGAGTTGTAAATAAA+TGG | 0.243774 | 4_1:+71157803 | Msa0569280:three_prime_UTR |
| AACAGCTAGTAAGCAAAATT+TGG | 0.251696 | 4_1:+71156075 | Msa0569280:CDS |
| CTGCTTTACCATGTCTTCTT+TGG | 0.253352 | 4_1:-71155150 | None:intergenic |
| CATTCATATCATATACTCTT+TGG | 0.258300 | 4_1:+71157833 | Msa0569280:three_prime_UTR |
| TTCAAGCTTAGCAACCTTCT+TGG | 0.263795 | 4_1:-71156104 | None:intergenic |
| CAGCTTCCACTTTCTGTATC+TGG | 0.276131 | 4_1:-71156415 | None:intergenic |
| TGAGTTTATTGAATCTCTTT+TGG | 0.286597 | 4_1:-71157674 | None:intergenic |
| GGAAAAGAAGCTGAAGAAAA+TGG | 0.288133 | 4_1:+71156534 | Msa0569280:CDS |
| CTGATTTCTCGAGCTGCATT+TGG | 0.306496 | 4_1:-71156597 | None:intergenic |
| GGTGTACTAACTTCTTCATT+TGG | 0.327725 | 4_1:-71155050 | None:intergenic |
| AGTGGAAGCTGTTATGTTAA+TGG | 0.333714 | 4_1:+71156427 | Msa0569280:CDS |
| ATTCTTGAATTGATCAAATT+CGG | 0.336313 | 4_1:-71156302 | None:intergenic |
| TACTAGCTGTTTCAGCAGCT+TGG | 0.342951 | 4_1:-71156063 | None:intergenic |
| GAGAAAAGCCGTAATGGATT+TGG | 0.355781 | 4_1:+71157709 | Msa0569280:CDS |
| GACTTGAGGAACTAGAATTC+AGG | 0.356240 | 4_1:+71156017 | Msa0569280:CDS |
| CATTTAATGTGAATGATAAT+AGG | 0.372447 | 4_1:+71156164 | Msa0569280:CDS |
| AGTTATTTGCCACAGCTTCA+TGG | 0.375858 | 4_1:-71155823 | None:intergenic |
| GATTGAAAAGAATGCCGAAT+TGG | 0.376504 | 4_1:+71156513 | Msa0569280:CDS |
| ACTAGCTGTTTCAGCAGCTT+GGG | 0.376852 | 4_1:-71156062 | None:intergenic |
| AGGTACAATGGAAGCTGAAA+TGG | 0.392441 | 4_1:+71156483 | Msa0569280:CDS |
| GCTCTTGCACTTCTCTGGCT+TGG | 0.397210 | 4_1:-71155793 | None:intergenic |
| GAATCTCTTCCTCCAATGAA+TGG | 0.402374 | 4_1:-71156798 | None:intergenic |
| GTTACACAAAGTCCCCAAAA+AGG | 0.407330 | 4_1:+71157610 | Msa0569280:CDS |
| GGTGACTAACTCGGTCTTCA+AGG | 0.409043 | 4_1:-71155733 | None:intergenic |
| CGAATTAGCTGCAGCTCTGT+TGG | 0.410377 | 4_1:+71155118 | Msa0569280:CDS |
| TTTCTGCAATGTGTAGTAGA+AGG | 0.418956 | 4_1:+71153470 | Msa0569280:five_prime_UTR |
| TGAACTTACCAAATCCATTA+CGG | 0.432010 | 4_1:-71157717 | None:intergenic |
| TTCTTTCTCTCCCTTGCACA+TGG | 0.433055 | 4_1:+71153243 | Msa0569280:five_prime_UTR |
| TCGCGATTTGAAGTCAAAAC+AGG | 0.434769 | 4_1:+71156948 | Msa0569280:CDS |
| CCTGAACTTTCCGTTTCACC+TGG | 0.434991 | 4_1:-71154137 | None:intergenic |
| CTAACTTCTTCATTTGGTGC+AGG | 0.436838 | 4_1:-71155044 | None:intergenic |
| GGTGATTGTGCTGCTACTGC+TGG | 0.445212 | 4_1:+71154045 | Msa0569280:five_prime_UTR |
| TTCAATCAAGAGCAGGAAGT+TGG | 0.455060 | 4_1:+71156849 | Msa0569280:CDS |
| GGCAAATAACTCACATGACT+TGG | 0.457088 | 4_1:+71155835 | Msa0569280:CDS |
| ATCTGAAATGTTATCTGTAA+AGG | 0.458369 | 4_1:-71156218 | None:intergenic |
| CCAGGTGAAACGGAAAGTTC+AGG | 0.459669 | 4_1:+71154137 | Msa0569280:CDS |
| ACCGAGTTAGTCACCTTGAT+GGG | 0.462981 | 4_1:+71155741 | Msa0569280:CDS |
| TGGACAGGAGGAGTTGGTTA+TGG | 0.464689 | 4_1:+71154090 | Msa0569280:CDS |
| GTTGAAGTCTCTTGCAACAT+TGG | 0.467526 | 4_1:+71157537 | Msa0569280:CDS |
| GAGACTTGAAGCTGTGGAGA+AGG | 0.470183 | 4_1:+71155961 | Msa0569280:CDS |
| CATGGATGATTTCCTTGAGA+TGG | 0.470382 | 4_1:+71156375 | Msa0569280:CDS |
| GACAACTAGAGCAATTATTC+CGG | 0.470652 | 4_1:-71154708 | None:intergenic |
| TATAGATAGATACATAACTT+TGG | 0.472290 | 4_1:-71157873 | None:intergenic |
| GCTGCCTCATACACTCTTTG+AGG | 0.477884 | 4_1:-71155766 | None:intergenic |
| GATAAGAGCAGCAGAATTGA+AGG | 0.478240 | 4_1:+71156627 | Msa0569280:CDS |
| TGTTAATGGAGGACGAGTAT+TGG | 0.478665 | 4_1:+71156441 | Msa0569280:CDS |
| CTGCTTTCCAAGAGATGCAA+TGG | 0.484799 | 4_1:-71157515 | None:intergenic |
| GACCGAGTTAGTCACCTTGA+TGG | 0.485370 | 4_1:+71155740 | Msa0569280:CDS |
| ATCATTTGAGGGAGTGAGGT+AGG | 0.492744 | 4_1:+71154024 | Msa0569280:five_prime_UTR |
| GTTGCTGAAGAAGCTGTCTC+AGG | 0.493553 | 4_1:+71155182 | Msa0569280:CDS |
| GTATTGGATCAATCTATTGT+TGG | 0.494117 | 4_1:+71156457 | Msa0569280:CDS |
| CGAGAAAAGTCCAGGTGAAA+CGG | 0.496474 | 4_1:+71154127 | Msa0569280:CDS |
| GAAAAGGAGACAAGATGATA+AGG | 0.497005 | 4_1:+71157784 | Msa0569280:three_prime_UTR |
| TTGTAGGTGAAATCATTTGA+GGG | 0.500207 | 4_1:+71154013 | Msa0569280:intron |
| CATCTATAATAACAGGATAC+CGG | 0.500342 | 4_1:+71154689 | Msa0569280:intron |
| GGTGATAGAGTAGCTTGGAT+TGG | 0.502409 | 4_1:-71155005 | None:intergenic |
| CTGCCTCATACACTCTTTGA+GGG | 0.505138 | 4_1:-71155765 | None:intergenic |
| GAAAGAAACCAAAACAAAGA+AGG | 0.505936 | 4_1:+71156714 | Msa0569280:CDS |
| AAGTCATCCGAGAAAAGTCC+AGG | 0.507122 | 4_1:+71154119 | Msa0569280:CDS |
| AGCTCGAGAAATCAGAGAAT+CGG | 0.507513 | 4_1:+71156605 | Msa0569280:CDS |
| CAAGAAGCAAGAGTGTGAGC+AGG | 0.509068 | 4_1:+71157743 | Msa0569280:CDS |
| TGAAATCATTTGAGGGAGTG+AGG | 0.509510 | 4_1:+71154020 | Msa0569280:five_prime_UTR |
| GGGCCCTCAAAGAGTGTATG+AGG | 0.511371 | 4_1:+71155762 | Msa0569280:CDS |
| AGAATTCAGGATTGCAGAGA+GGG | 0.513958 | 4_1:+71156030 | Msa0569280:CDS |
| ACTTCACAAGTTAACTCCAT+AGG | 0.515278 | 4_1:-71157589 | None:intergenic |
| AGATAAACTTGATGTAGAGA+TGG | 0.518264 | 4_1:+71156561 | Msa0569280:CDS |
| TTTGTAGGTGAAATCATTTG+AGG | 0.518509 | 4_1:+71154012 | Msa0569280:intron |
| TCAGGACAAAGAACTTGCAT+TGG | 0.521630 | 4_1:+71157462 | Msa0569280:intron |
| CTCAAGTTCAGCAAGATGCC+AGG | 0.522890 | 4_1:+71156902 | Msa0569280:CDS |
| ATGATTTCCTTGAGATGGAA+AGG | 0.523962 | 4_1:+71156380 | Msa0569280:CDS |
| ACTCATGAGAAAAGCCGTAA+TGG | 0.524338 | 4_1:+71157703 | Msa0569280:CDS |
| ATTGGAGGAAGAGATTCAAA+AGG | 0.526916 | 4_1:+71156804 | Msa0569280:CDS |
| GATAAACTTGATGTAGAGAT+GGG | 0.528053 | 4_1:+71156562 | Msa0569280:CDS |
| TTCAACTGAGATCAATCTCA+TGG | 0.530613 | 4_1:+71156357 | Msa0569280:CDS |
| TCGTTGAAAATCATGTGAAA+AGG | 0.530655 | 4_1:+71157768 | Msa0569280:exon |
| TTCAAGTCTCCTCTGAAGAT+CGG | 0.535787 | 4_1:-71155948 | None:intergenic |
| TTTAAATGGACAGGAGGAGT+TGG | 0.537649 | 4_1:+71154084 | Msa0569280:exon |
| AAGAAGCAAGAGTGTGAGCA+GGG | 0.538699 | 4_1:+71157744 | Msa0569280:CDS |
| TTTACAGATAACATTTCAGA+TGG | 0.540438 | 4_1:+71156220 | Msa0569280:CDS |
| GAGAAAAGTTGCTGAGCTTG+AGG | 0.541808 | 4_1:+71155880 | Msa0569280:CDS |
| TGATTCAGACAACAGCCCTA+TGG | 0.543080 | 4_1:+71157573 | Msa0569280:CDS |
| CTTCACAAGTTAACTCCATA+GGG | 0.543569 | 4_1:-71157588 | None:intergenic |
| GCAGGCTTAGATGTGACCTC+TGG | 0.546710 | 4_1:-71155026 | None:intergenic |
| TCCACTTTCTGTATCTGGCA+AGG | 0.547804 | 4_1:-71156410 | None:intergenic |
| CTGAGAATTCAATCAAGAGC+AGG | 0.555581 | 4_1:+71156842 | Msa0569280:CDS |
| CAGCAAGCCTTTCCATCTCA+AGG | 0.558005 | 4_1:-71156387 | None:intergenic |
| GCCTTGCCAGATACAGAAAG+TGG | 0.558807 | 4_1:+71156409 | Msa0569280:CDS |
| ACTCTTTGAGGGCCCCATCA+AGG | 0.563213 | 4_1:-71155754 | None:intergenic |
| ACAGATAACATTTCAGATGG+TGG | 0.563408 | 4_1:+71156223 | Msa0569280:CDS |
| AAATTTGGAGAGCACCAAGA+AGG | 0.563758 | 4_1:+71156090 | Msa0569280:CDS |
| GATCAATCTATTGTTGGTCA+AGG | 0.566842 | 4_1:+71156463 | Msa0569280:CDS |
| CCCCATCAAGGTGACTAACT+CGG | 0.567534 | 4_1:-71155742 | None:intergenic |
| AATCAAGAGCAGGAAGTTGG+AGG | 0.569457 | 4_1:+71156852 | Msa0569280:CDS |
| GATTGTGCTGCTACTGCTGG+TGG | 0.571147 | 4_1:+71154048 | Msa0569280:five_prime_UTR |
| GGAGGAGTTGGTTATGGCGA+AGG | 0.577715 | 4_1:+71154096 | Msa0569280:CDS |
| TATTGTTGGTCAAGGTACAA+TGG | 0.590943 | 4_1:+71156471 | Msa0569280:CDS |
| GCATGCGTGGACCATGTGCA+AGG | 0.591031 | 4_1:-71153254 | None:intergenic |
| GCAAATAACTCACATGACTT+GGG | 0.592085 | 4_1:+71155836 | Msa0569280:CDS |
| ATCAAGAGCAGGAAGTTGGA+GGG | 0.592927 | 4_1:+71156853 | Msa0569280:CDS |
| TAGAATTCAGGATTGCAGAG+AGG | 0.594182 | 4_1:+71156029 | Msa0569280:CDS |
| TCAGAGGAGACTTGAAGCTG+TGG | 0.600308 | 4_1:+71155955 | Msa0569280:CDS |
| GCTGCAAGACAGAAGAACTC+AGG | 0.602737 | 4_1:+71155710 | Msa0569280:CDS |
| ACATTGCAGAAAACGAAGAT+CGG | 0.608923 | 4_1:-71153459 | None:intergenic |
| ACTGAAATTTGCTCAAACTG+AGG | 0.609862 | 4_1:+71156753 | Msa0569280:CDS |
| CTATTCGCTCCGATCTTCAG+AGG | 0.616299 | 4_1:+71155939 | Msa0569280:CDS |
| CCTCTGGTGATAGAGTAGCT+TGG | 0.616609 | 4_1:-71155010 | None:intergenic |
| GAACATGAGTCAGAACAGCT+TGG | 0.617775 | 4_1:-71156265 | None:intergenic |
| GCAAAAGATCCATGAAGCTG+TGG | 0.621012 | 4_1:+71155814 | Msa0569280:CDS |
| GGCTGTTGTCTGAATCAAGT+AGG | 0.621986 | 4_1:-71157567 | None:intergenic |
| AATAATGTGTGTGTGAGAAG+AGG | 0.622912 | 4_1:-71153280 | None:intergenic |
| AATTAGTGCCAAAGAAGACA+TGG | 0.626226 | 4_1:+71155142 | Msa0569280:CDS |
| GAGTCATGGATTTCAGTCTA+CGG | 0.630257 | 4_1:-71156135 | None:intergenic |
| CATGCGTGGACCATGTGCAA+GGG | 0.631425 | 4_1:-71153253 | None:intergenic |
| CTGGGAGAAGGCTGAAAACG+AGG | 0.637297 | 4_1:+71155661 | Msa0569280:CDS |
| TGAAACGGAAAGTTCAGGAT+CGG | 0.638008 | 4_1:+71154142 | Msa0569280:CDS |
| GGAAGCTGTTATGTTAATGG+AGG | 0.654516 | 4_1:+71156430 | Msa0569280:CDS |
| TGAGCTGCAATCTCGACTTG+AGG | 0.664109 | 4_1:+71156003 | Msa0569280:CDS |
| AGATGCCAGGACTTTGCACA+AGG | 0.664420 | 4_1:+71156915 | Msa0569280:CDS |
| CCGAGTTAGTCACCTTGATG+GGG | 0.664423 | 4_1:+71155742 | Msa0569280:CDS |
| TGAGAAGAGGATAGCATGCG+TGG | 0.672762 | 4_1:-71153267 | None:intergenic |
| CCAAGCTACTCTATCACCAG+AGG | 0.697015 | 4_1:+71155010 | Msa0569280:CDS |
| AAAGAAGCTGAAGAAAATGG+AGG | 0.700401 | 4_1:+71156537 | Msa0569280:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATGAAAAAAAATAAAATAGA+GGG | + | chr4_1:71154428-71154447 | Msa0569280:intron | 10.0% |
| !!! | TTATTTATTTTTTGAATCCT+TGG | + | chr4_1:71153551-71153570 | Msa0569280:intron | 15.0% |
| !!! | TATTTATTTTTTGAATCCTT+GGG | + | chr4_1:71153552-71153571 | Msa0569280:intron | 15.0% |
| !! | TAGTAATAATAAAAAAGAGA+AGG | - | chr4_1:71153849-71153868 | None:intergenic | 15.0% |
| !! | GATGAAAAAAAATAAAATAG+AGG | + | chr4_1:71154427-71154446 | Msa0569280:intron | 15.0% |
| !!! | TACTGTTTTTCATTTTATTT+AGG | + | chr4_1:71155638-71155657 | Msa0569280:intron | 15.0% |
| !!! | ATATTATTTTACACGTTTCT+TGG | - | chr4_1:71153345-71153364 | None:intergenic | 20.0% |
| !!! | TTTTGTTTAATTTTGACGTA+TGG | + | chr4_1:71153669-71153688 | Msa0569280:intron | 20.0% |
| !! | TTAATAACAATAAAGTGTAG+CGG | + | chr4_1:71153697-71153716 | Msa0569280:intron | 20.0% |
| !! | TAATAATAAAAAAGAGAAGG+TGG | - | chr4_1:71153846-71153865 | None:intergenic | 20.0% |
| !! | GAAAACAAGACAAAAAAATA+AGG | - | chr4_1:71153898-71153917 | None:intergenic | 20.0% |
| !!! | TATTGATTTGATGATTTTGT+AGG | + | chr4_1:71153997-71154016 | Msa0569280:intron | 20.0% |
| !! | AACATATATGCAATCAAAAA+TGG | - | chr4_1:71154239-71154258 | None:intergenic | 20.0% |
| !!! | CTATTTTCATCTATAATAAC+AGG | + | chr4_1:71154682-71154701 | Msa0569280:intron | 20.0% |
| !!! | CCTTCTTCTTTATATTTTTT+GGG | - | chr4_1:71155074-71155093 | None:intergenic | 20.0% |
| !!! | ACCTTCTTCTTTATATTTTT+TGG | - | chr4_1:71155075-71155094 | None:intergenic | 20.0% |
| !! | TAATCTACGAATTAAATATC+TGG | - | chr4_1:71155223-71155242 | None:intergenic | 20.0% |
| !! | ATCATAATCTTCTAACTTAA+TGG | + | chr4_1:71155575-71155594 | Msa0569280:intron | 20.0% |
| !! | TCATAATCTTCTAACTTAAT+GGG | + | chr4_1:71155576-71155595 | Msa0569280:intron | 20.0% |
| !!! | ATATCTTTTCATATATACCT+TGG | - | chr4_1:71155619-71155638 | None:intergenic | 20.0% |
| !!! | TTTTTCATTTTATTTAGGCT+GGG | + | chr4_1:71155643-71155662 | Msa0569280:intron | 20.0% |
| !! | CATTTAATGTGAATGATAAT+AGG | + | chr4_1:71156164-71156183 | Msa0569280:CDS | 20.0% |
| !! | ATTCTTGAATTGATCAAATT+CGG | - | chr4_1:71156305-71156324 | None:intergenic | 20.0% |
| !! | ATTGCAAAATACATTAAACA+CGG | - | chr4_1:71157013-71157032 | None:intergenic | 20.0% |
| !!! | CAGATACTAAGTTTTTTATA+TGG | - | chr4_1:71157437-71157456 | None:intergenic | 20.0% |
| !! | TATAGATAGATACATAACTT+TGG | - | chr4_1:71157876-71157895 | None:intergenic | 20.0% |
| !!! | TGAACTTTGAAAAATTGAAA+TGG | + | chr4_1:71157908-71157927 | Msa0569280:three_prime_UTR | 20.0% |
| !! | GATAAAGACATTCTATAATT+TGG | - | chr4_1:71157962-71157981 | None:intergenic | 20.0% |
| !!! | TGTTTTACTTTGAAGAGATT+TGG | - | chr4_1:71153163-71153182 | None:intergenic | 25.0% |
| ! | ATATATGCAATCAAAAATGG+CGG | - | chr4_1:71154236-71154255 | None:intergenic | 25.0% |
| ! | GAATGTATACCAGATAATAT+GGG | + | chr4_1:71154354-71154373 | Msa0569280:intron | 25.0% |
| !! | AGATAATATGGGTTATGTTA+GGG | + | chr4_1:71154365-71154384 | Msa0569280:intron | 25.0% |
| !! | ATTTTCTCAAGTGAAAATCA+CGG | + | chr4_1:71154390-71154409 | Msa0569280:intron | 25.0% |
| !! | AAGAAAGTGTGTTTACTTTA+AGG | + | chr4_1:71154585-71154604 | Msa0569280:intron | 25.0% |
| !! | AGAAAGTGTGTTTACTTTAA+GGG | + | chr4_1:71154586-71154605 | Msa0569280:intron | 25.0% |
| ! | TCTCTTGTTCTCTATATATA+AGG | - | chr4_1:71154620-71154639 | None:intergenic | 25.0% |
| !!! | TTTTTTCTTTCTAAGCATTC+AGG | + | chr4_1:71154889-71154908 | Msa0569280:intron | 25.0% |
| ! | AATCAGATTCATCACATTAT+TGG | - | chr4_1:71154948-71154967 | None:intergenic | 25.0% |
| ! | CCCAAAAAATATAAAGAAGA+AGG | + | chr4_1:71155071-71155090 | Msa0569280:CDS | 25.0% |
| ! | GGCAAATTTATTGATATACA+TGG | - | chr4_1:71155302-71155321 | None:intergenic | 25.0% |
| ! | AAAATTAATTACAGCTGCAA+AGG | - | chr4_1:71155364-71155383 | None:intergenic | 25.0% |
| !!! | GTTTTTCATTTTATTTAGGC+TGG | + | chr4_1:71155642-71155661 | Msa0569280:intron | 25.0% |
| !! | ATTAAATGTTTTACGAGTCA+TGG | - | chr4_1:71156152-71156171 | None:intergenic | 25.0% |
| !! | ATCTGAAATGTTATCTGTAA+AGG | - | chr4_1:71156221-71156240 | None:intergenic | 25.0% |
| ! | TTTACAGATAACATTTCAGA+TGG | + | chr4_1:71156220-71156239 | Msa0569280:CDS | 25.0% |
| ! | TTCAAGAATAAAAAGACTAC+TGG | + | chr4_1:71156316-71156335 | Msa0569280:CDS | 25.0% |
| ! | GATTTCAAAAATCCATTCAT+TGG | + | chr4_1:71156786-71156805 | Msa0569280:CDS | 25.0% |
| !!! | TCAGTTTGCTAATACTTATT+TGG | + | chr4_1:71156971-71156990 | Msa0569280:intron | 25.0% |
| ! | TCATAAAAAGTAATGCTAGA+AGG | - | chr4_1:71157047-71157066 | None:intergenic | 25.0% |
| !!! | ATTCTTCAATCCTTTTTTGT+TGG | + | chr4_1:71157090-71157109 | Msa0569280:intron | 25.0% |
| ! | ATTGTTTCAACCAACAAAAA+AGG | - | chr4_1:71157103-71157122 | None:intergenic | 25.0% |
| ! | AATGCAATTTAGTTGTAGTT+TGG | - | chr4_1:71157230-71157249 | None:intergenic | 25.0% |
| ! | ACTAAATTGCATTTGTAGTT+TGG | + | chr4_1:71157237-71157256 | Msa0569280:intron | 25.0% |
| ! | GTTAAGTAATCATATTGCAT+TGG | + | chr4_1:71157402-71157421 | Msa0569280:intron | 25.0% |
| !! | GAGTTTATTGAATCTCTTTT+GGG | - | chr4_1:71157676-71157695 | None:intergenic | 25.0% |
| !! | TGAGTTTATTGAATCTCTTT+TGG | - | chr4_1:71157677-71157696 | None:intergenic | 25.0% |
| ! | CATTCATATCATATACTCTT+TGG | + | chr4_1:71157833-71157852 | Msa0569280:three_prime_UTR | 25.0% |
| !!! | TATTTTTTGAATCCTTGGGA+TGG | + | chr4_1:71153556-71153575 | Msa0569280:intron | 30.0% |
| TTCAAAGCAGTATCCTTATT+TGG | + | chr4_1:71153729-71153748 | Msa0569280:intron | 30.0% | |
| ! | TCAAAGCAGTATCCTTATTT+GGG | + | chr4_1:71153730-71153749 | Msa0569280:intron | 30.0% |
| !! | GCTTCATAACTTGTTCAAAA+TGG | + | chr4_1:71153755-71153774 | Msa0569280:intron | 30.0% |
| !! | TCATAACTTGTTCAAAATGG+AGG | + | chr4_1:71153758-71153777 | Msa0569280:intron | 30.0% |
| ATACAGAAACTAATAACCAC+TGG | - | chr4_1:71153980-71153999 | None:intergenic | 30.0% | |
| TTTGTAGGTGAAATCATTTG+AGG | + | chr4_1:71154012-71154031 | Msa0569280:intron | 30.0% | |
| TTGTAGGTGAAATCATTTGA+GGG | + | chr4_1:71154013-71154032 | Msa0569280:intron | 30.0% | |
| !!! | GTTTTTGGCTGTGTTTTAAA+TGG | + | chr4_1:71154070-71154089 | Msa0569280:exon | 30.0% |
| ! | CAATTTTACTTACTGTCACA+TGG | + | chr4_1:71154275-71154294 | Msa0569280:intron | 30.0% |
| GGAATGTATACCAGATAATA+TGG | + | chr4_1:71154353-71154372 | Msa0569280:intron | 30.0% | |
| CTAACATAACCCATATTATC+TGG | - | chr4_1:71154366-71154385 | None:intergenic | 30.0% | |
| ! | CAGATAATATGGGTTATGTT+AGG | + | chr4_1:71154364-71154383 | Msa0569280:intron | 30.0% |
| ! | GTGATTTTCACTTGAGAAAA+TGG | - | chr4_1:71154391-71154410 | None:intergenic | 30.0% |
| GAAACTGCACAAATTGTATA+TGG | + | chr4_1:71154546-71154565 | Msa0569280:intron | 30.0% | |
| ! | GAAAGTGTGTTTACTTTAAG+GGG | + | chr4_1:71154587-71154606 | Msa0569280:intron | 30.0% |
| CATCTATAATAACAGGATAC+CGG | + | chr4_1:71154689-71154708 | Msa0569280:intron | 30.0% | |
| AACTATCTCAAGTTACAGTA+GGG | - | chr4_1:71154733-71154752 | None:intergenic | 30.0% | |
| AAACTATCTCAAGTTACAGT+AGG | - | chr4_1:71154734-71154753 | None:intergenic | 30.0% | |
| ! | GAGATAGTTTGTAAATGTCT+AGG | + | chr4_1:71154744-71154763 | Msa0569280:intron | 30.0% |
| TGAAAACAATGGTTATTGCT+CGG | + | chr4_1:71154772-71154791 | Msa0569280:intron | 30.0% | |
| TATGTTGTAATGAATCTGCT+CGG | + | chr4_1:71154914-71154933 | Msa0569280:intron | 30.0% | |
| GTATATCAATAAATTTGCCC+TGG | + | chr4_1:71155303-71155322 | Msa0569280:intron | 30.0% | |
| AAAACTTATCTACCAAACCA+GGG | - | chr4_1:71155323-71155342 | None:intergenic | 30.0% | |
| AAAAACTTATCTACCAAACC+AGG | - | chr4_1:71155324-71155343 | None:intergenic | 30.0% | |
| AAGGTAAGAAAAATGAACCA+TGG | - | chr4_1:71155538-71155557 | None:intergenic | 30.0% | |
| !! | ATGGTTCATTTTTCTTACCT+TGG | + | chr4_1:71155537-71155556 | Msa0569280:intron | 30.0% |
| !! | TGGTTCATTTTTCTTACCTT+GGG | + | chr4_1:71155538-71155557 | Msa0569280:intron | 30.0% |
| GAAGATTATGATGATAGTCA+TGG | - | chr4_1:71155567-71155586 | None:intergenic | 30.0% | |
| TTTCACAGAAGTTTAAACCA+AGG | + | chr4_1:71155599-71155618 | Msa0569280:intron | 30.0% | |
| AACAGCTAGTAAGCAAAATT+TGG | + | chr4_1:71156075-71156094 | Msa0569280:CDS | 30.0% | |
| GTATTGGATCAATCTATTGT+TGG | + | chr4_1:71156457-71156476 | Msa0569280:CDS | 30.0% | |
| AGATAAACTTGATGTAGAGA+TGG | + | chr4_1:71156561-71156580 | Msa0569280:CDS | 30.0% | |
| GATAAACTTGATGTAGAGAT+GGG | + | chr4_1:71156562-71156581 | Msa0569280:CDS | 30.0% | |
| GAAAGAAACCAAAACAAAGA+AGG | + | chr4_1:71156714-71156733 | Msa0569280:CDS | 30.0% | |
| !! | AACTATCTCCTTCTTTGTTT+TGG | - | chr4_1:71156725-71156744 | None:intergenic | 30.0% |
| TTCAAAAATCCATTCATTGG+AGG | + | chr4_1:71156789-71156808 | Msa0569280:CDS | 30.0% | |
| TTTAGTTGTAGTTTGGACTA+TGG | - | chr4_1:71157223-71157242 | None:intergenic | 30.0% | |
| TCATATAAACAGCAACACAA+AGG | - | chr4_1:71157298-71157317 | None:intergenic | 30.0% | |
| !! | AACTGCTTTTACTGGTATTT+AGG | - | chr4_1:71157385-71157404 | None:intergenic | 30.0% |
| !! | GATTACTTAACTGCTTTTAC+TGG | - | chr4_1:71157393-71157412 | None:intergenic | 30.0% |
| !! | AACTTAGTATCTGCTATTTC+AGG | + | chr4_1:71157444-71157463 | Msa0569280:intron | 30.0% |
| ! | AATTTTTCACCTCCTTTTTG+GGG | - | chr4_1:71157625-71157644 | None:intergenic | 30.0% |
| ! | CAATTTTTCACCTCCTTTTT+GGG | - | chr4_1:71157626-71157645 | None:intergenic | 30.0% |
| ! | TCAATTTTTCACCTCCTTTT+TGG | - | chr4_1:71157627-71157646 | None:intergenic | 30.0% |
| TGAACTTACCAAATCCATTA+CGG | - | chr4_1:71157720-71157739 | None:intergenic | 30.0% | |
| TCGTTGAAAATCATGTGAAA+AGG | + | chr4_1:71157768-71157787 | Msa0569280:exon | 30.0% | |
| AAGGCTGAGTTGTAAATAAA+TGG | + | chr4_1:71157803-71157822 | Msa0569280:three_prime_UTR | 30.0% | |
| ! | AAGACAACGAAAAAGTGCAA+TGG | - | chr4_1:71153217-71153236 | None:intergenic | 35.0% |
| AATAATGTGTGTGTGAGAAG+AGG | - | chr4_1:71153283-71153302 | None:intergenic | 35.0% | |
| ACATTGCAGAAAACGAAGAT+CGG | - | chr4_1:71153462-71153481 | None:intergenic | 35.0% | |
| TTTCTGCAATGTGTAGTAGA+AGG | + | chr4_1:71153470-71153489 | Msa0569280:five_prime_UTR | 35.0% | |
| GTTGAAAGAGACATGAATGA+GGG | - | chr4_1:71153512-71153531 | None:intergenic | 35.0% | |
| AGTTGAAAGAGACATGAATG+AGG | - | chr4_1:71153513-71153532 | None:intergenic | 35.0% | |
| GTTATGAAGCTTCCCAAATA+AGG | - | chr4_1:71153745-71153764 | None:intergenic | 35.0% | |
| ! | AGAAAGATTTTCTGATGAGC+AGG | + | chr4_1:71154178-71154197 | Msa0569280:CDS | 35.0% |
| TTACTTACTGTCACATGGTT+TGG | + | chr4_1:71154280-71154299 | Msa0569280:intron | 35.0% | |
| TACTTACTGTCACATGGTTT+GGG | + | chr4_1:71154281-71154300 | Msa0569280:intron | 35.0% | |
| TCTTTCACAATTCAGTCTTG+TGG | + | chr4_1:71154331-71154350 | Msa0569280:intron | 35.0% | |
| ! | CTTTCACAATTCAGTCTTGT+GGG | + | chr4_1:71154332-71154351 | Msa0569280:intron | 35.0% |
| ! | AAAATCACGGTGTTTGTTGA+AGG | + | chr4_1:71154403-71154422 | Msa0569280:intron | 35.0% |
| ! | TAAAATAGAGGGTGTGAATG+TGG | + | chr4_1:71154439-71154458 | Msa0569280:intron | 35.0% |
| GTGAATGTGGAAACTAGAAA+AGG | + | chr4_1:71154452-71154471 | Msa0569280:intron | 35.0% | |
| TGTTTCAGACATTGTGAAAC+AGG | + | chr4_1:71154490-71154509 | Msa0569280:intron | 35.0% | |
| GAAACAGGTGTTAAGAAACA+TGG | + | chr4_1:71154505-71154524 | Msa0569280:intron | 35.0% | |
| GACAACTAGAGCAATTATTC+CGG | - | chr4_1:71154711-71154730 | None:intergenic | 35.0% | |
| TCTAGGCTACATGAAAACAA+TGG | + | chr4_1:71154761-71154780 | Msa0569280:intron | 35.0% | |
| !!! | AGTTCGCTTTTTAAGCATTC+AGG | + | chr4_1:71154816-71154835 | Msa0569280:intron | 35.0% |
| TTTGTTGCAATGAATCTGCT+CGG | + | chr4_1:71154841-71154860 | Msa0569280:intron | 35.0% | |
| TACCTTCACAATTACAGCAT+GGG | - | chr4_1:71154982-71155001 | None:intergenic | 35.0% | |
| ATACCTTCACAATTACAGCA+TGG | - | chr4_1:71154983-71155002 | None:intergenic | 35.0% | |
| GGTGTACTAACTTCTTCATT+TGG | - | chr4_1:71155053-71155072 | None:intergenic | 35.0% | |
| AATTAGTGCCAAAGAAGACA+TGG | + | chr4_1:71155142-71155161 | Msa0569280:CDS | 35.0% | |
| TGTCTCAGGTATTTACTGTT+TGG | + | chr4_1:71155196-71155215 | Msa0569280:intron | 35.0% | |
| TCAATAAATTTGCCCTGGTT+TGG | + | chr4_1:71155308-71155327 | Msa0569280:intron | 35.0% | |
| !! | ATTTTATTTAGGCTGGGAGA+AGG | + | chr4_1:71155649-71155668 | Msa0569280:intron | 35.0% |
| GCAAATAACTCACATGACTT+GGG | + | chr4_1:71155836-71155855 | Msa0569280:CDS | 35.0% | |
| ACAGATAACATTTCAGATGG+TGG | + | chr4_1:71156223-71156242 | Msa0569280:CDS | 35.0% | |
| TTCAACTGAGATCAATCTCA+TGG | + | chr4_1:71156357-71156376 | Msa0569280:CDS | 35.0% | |
| ATGATTTCCTTGAGATGGAA+AGG | + | chr4_1:71156380-71156399 | Msa0569280:CDS | 35.0% | |
| AGTGGAAGCTGTTATGTTAA+TGG | + | chr4_1:71156427-71156446 | Msa0569280:CDS | 35.0% | |
| GATCAATCTATTGTTGGTCA+AGG | + | chr4_1:71156463-71156482 | Msa0569280:CDS | 35.0% | |
| TATTGTTGGTCAAGGTACAA+TGG | + | chr4_1:71156471-71156490 | Msa0569280:CDS | 35.0% | |
| GATTGAAAAGAATGCCGAAT+TGG | + | chr4_1:71156513-71156532 | Msa0569280:CDS | 35.0% | |
| ! | CTTCAGCTTCTTTTCCAATT+CGG | - | chr4_1:71156530-71156549 | None:intergenic | 35.0% |
| GGAAAAGAAGCTGAAGAAAA+TGG | + | chr4_1:71156534-71156553 | Msa0569280:CDS | 35.0% | |
| AAAGAAGCTGAAGAAAATGG+AGG | + | chr4_1:71156537-71156556 | Msa0569280:CDS | 35.0% | |
| ! | ACTGAAATTTGCTCAAACTG+AGG | + | chr4_1:71156753-71156772 | Msa0569280:CDS | 35.0% |
| ATTGGAGGAAGAGATTCAAA+AGG | + | chr4_1:71156804-71156823 | Msa0569280:CDS | 35.0% | |
| AACAGCAACACAAAGGAATT+GGG | - | chr4_1:71157291-71157310 | None:intergenic | 35.0% | |
| AAACAGCAACACAAAGGAAT+TGG | - | chr4_1:71157292-71157311 | None:intergenic | 35.0% | |
| !!! | CAAGAGATGCAATGGTTTTT+TGG | - | chr4_1:71157510-71157529 | None:intergenic | 35.0% |
| CAAAAAACCATTGCATCTCT+TGG | + | chr4_1:71157508-71157527 | Msa0569280:CDS | 35.0% | |
| CTTCACAAGTTAACTCCATA+GGG | - | chr4_1:71157591-71157610 | None:intergenic | 35.0% | |
| ACTTCACAAGTTAACTCCAT+AGG | - | chr4_1:71157592-71157611 | None:intergenic | 35.0% | |
| GAAAAGGAGACAAGATGATA+AGG | + | chr4_1:71157784-71157803 | Msa0569280:three_prime_UTR | 35.0% | |
| ! | TTTTGAATCCTTGGGATGGT+AGG | + | chr4_1:71153560-71153579 | Msa0569280:intron | 40.0% |
| ACTAATAACCACTGGATCTG+CGG | - | chr4_1:71153972-71153991 | None:intergenic | 40.0% | |
| TGAAATCATTTGAGGGAGTG+AGG | + | chr4_1:71154020-71154039 | Msa0569280:five_prime_UTR | 40.0% | |
| !! | TGGCTGTGTTTTAAATGGAC+AGG | + | chr4_1:71154075-71154094 | Msa0569280:exon | 40.0% |
| !! | CTGTGTTTTAAATGGACAGG+AGG | + | chr4_1:71154078-71154097 | Msa0569280:exon | 40.0% |
| TTTAAATGGACAGGAGGAGT+TGG | + | chr4_1:71154084-71154103 | Msa0569280:exon | 40.0% | |
| TGAAACGGAAAGTTCAGGAT+CGG | + | chr4_1:71154142-71154161 | Msa0569280:CDS | 40.0% | |
| ! | AAGATTTTCTGATGAGCAGG+TGG | + | chr4_1:71154181-71154200 | Msa0569280:intron | 40.0% |
| TTCCCATGCTGTAATTGTGA+AGG | + | chr4_1:71154977-71154996 | Msa0569280:intron | 40.0% | |
| !! | CTAACTTCTTCATTTGGTGC+AGG | - | chr4_1:71155047-71155066 | None:intergenic | 40.0% |
| CTGCTTTACCATGTCTTCTT+TGG | - | chr4_1:71155153-71155172 | None:intergenic | 40.0% | |
| ! | TGCTTCTTTTTGCTTGTCCA+TGG | + | chr4_1:71155518-71155537 | Msa0569280:intron | 40.0% |
| AGTTATTTGCCACAGCTTCA+TGG | - | chr4_1:71155826-71155845 | None:intergenic | 40.0% | |
| GGCAAATAACTCACATGACT+TGG | + | chr4_1:71155835-71155854 | Msa0569280:CDS | 40.0% | |
| TCTCTCAAGTTCGAATCTTC+TGG | - | chr4_1:71155864-71155883 | None:intergenic | 40.0% | |
| ! | TTCAAGTCTCCTCTGAAGAT+CGG | - | chr4_1:71155951-71155970 | None:intergenic | 40.0% |
| GACTTGAGGAACTAGAATTC+AGG | + | chr4_1:71156017-71156036 | Msa0569280:CDS | 40.0% | |
| TAGAATTCAGGATTGCAGAG+AGG | + | chr4_1:71156029-71156048 | Msa0569280:CDS | 40.0% | |
| AGAATTCAGGATTGCAGAGA+GGG | + | chr4_1:71156030-71156049 | Msa0569280:CDS | 40.0% | |
| !! | AAATTTGGAGAGCACCAAGA+AGG | + | chr4_1:71156090-71156109 | Msa0569280:CDS | 40.0% |
| TTCAAGCTTAGCAACCTTCT+TGG | - | chr4_1:71156107-71156126 | None:intergenic | 40.0% | |
| GAGTCATGGATTTCAGTCTA+CGG | - | chr4_1:71156138-71156157 | None:intergenic | 40.0% | |
| CATGGATGATTTCCTTGAGA+TGG | + | chr4_1:71156375-71156394 | Msa0569280:CDS | 40.0% | |
| GGAAGCTGTTATGTTAATGG+AGG | + | chr4_1:71156430-71156449 | Msa0569280:CDS | 40.0% | |
| TGTTAATGGAGGACGAGTAT+TGG | + | chr4_1:71156441-71156460 | Msa0569280:CDS | 40.0% | |
| AGGTACAATGGAAGCTGAAA+TGG | + | chr4_1:71156483-71156502 | Msa0569280:CDS | 40.0% | |
| AGCTCGAGAAATCAGAGAAT+CGG | + | chr4_1:71156605-71156624 | Msa0569280:CDS | 40.0% | |
| GATAAGAGCAGCAGAATTGA+AGG | + | chr4_1:71156627-71156646 | Msa0569280:CDS | 40.0% | |
| GAATCTCTTCCTCCAATGAA+TGG | - | chr4_1:71156801-71156820 | None:intergenic | 40.0% | |
| CTGAGAATTCAATCAAGAGC+AGG | + | chr4_1:71156842-71156861 | Msa0569280:CDS | 40.0% | |
| TTCAATCAAGAGCAGGAAGT+TGG | + | chr4_1:71156849-71156868 | Msa0569280:CDS | 40.0% | |
| ! | ATTTTCCTTGTGCAAAGTCC+TGG | - | chr4_1:71156923-71156942 | None:intergenic | 40.0% |
| ! | TCGCGATTTGAAGTCAAAAC+AGG | + | chr4_1:71156948-71156967 | Msa0569280:CDS | 40.0% |
| TGCATTTGTAGTTTGGACTC+TGG | + | chr4_1:71157244-71157263 | Msa0569280:intron | 40.0% | |
| ACAGCAACACAAAGGAATTG+GGG | - | chr4_1:71157290-71157309 | None:intergenic | 40.0% | |
| TCAGGACAAAGAACTTGCAT+TGG | + | chr4_1:71157462-71157481 | Msa0569280:intron | 40.0% | |
| GTTGAAGTCTCTTGCAACAT+TGG | + | chr4_1:71157537-71157556 | Msa0569280:CDS | 40.0% | |
| GTTACACAAAGTCCCCAAAA+AGG | + | chr4_1:71157610-71157629 | Msa0569280:CDS | 40.0% | |
| ACTCATGAGAAAAGCCGTAA+TGG | + | chr4_1:71157703-71157722 | Msa0569280:CDS | 40.0% | |
| !! | GAGAAAAGCCGTAATGGATT+TGG | + | chr4_1:71157709-71157728 | Msa0569280:CDS | 40.0% |
| TTCTTTCTCTCCCTTGCACA+TGG | + | chr4_1:71153243-71153262 | Msa0569280:five_prime_UTR | 45.0% | |
| ATTACACACCTACCATCCCA+AGG | - | chr4_1:71153571-71153590 | None:intergenic | 45.0% | |
| ! | TAGATTTTCCGCAGATCCAG+TGG | + | chr4_1:71153961-71153980 | Msa0569280:intron | 45.0% |
| ATCATTTGAGGGAGTGAGGT+AGG | + | chr4_1:71154024-71154043 | Msa0569280:five_prime_UTR | 45.0% | |
| AAGTCATCCGAGAAAAGTCC+AGG | + | chr4_1:71154119-71154138 | Msa0569280:CDS | 45.0% | |
| ! | CGTTTCACCTGGACTTTTCT+CGG | - | chr4_1:71154129-71154148 | None:intergenic | 45.0% |
| CGAGAAAAGTCCAGGTGAAA+CGG | + | chr4_1:71154127-71154146 | Msa0569280:CDS | 45.0% | |
| ! | TGTCACATGGTTTGGGACTT+TGG | + | chr4_1:71154288-71154307 | Msa0569280:intron | 45.0% |
| ! | GTCACATGGTTTGGGACTTT+GGG | + | chr4_1:71154289-71154308 | Msa0569280:intron | 45.0% |
| AAGAAACATGGCAGAACCCA+TGG | + | chr4_1:71154517-71154536 | Msa0569280:intron | 45.0% | |
| GTGCAGTTTCTCTCTTCCAT+GGG | - | chr4_1:71154536-71154555 | None:intergenic | 45.0% | |
| TGTGCAGTTTCTCTCTTCCA+TGG | - | chr4_1:71154537-71154556 | None:intergenic | 45.0% | |
| CTCGGTCTGCAAATTTCTCA+TGG | + | chr4_1:71154790-71154809 | Msa0569280:intron | 45.0% | |
| GGTGATAGAGTAGCTTGGAT+TGG | - | chr4_1:71155008-71155027 | None:intergenic | 45.0% | |
| CTTCACAACCATCATGATCC+CGG | + | chr4_1:71155461-71155480 | Msa0569280:intron | 45.0% | |
| TCCTAACTCCTAACGTGAAC+CGG | - | chr4_1:71155483-71155502 | None:intergenic | 45.0% | |
| ATGATAGTCATGGCTTCCCA+AGG | - | chr4_1:71155557-71155576 | None:intergenic | 45.0% | |
| ACCGAGTTAGTCACCTTGAT+GGG | + | chr4_1:71155741-71155760 | Msa0569280:CDS | 45.0% | |
| CTGCCTCATACACTCTTTGA+GGG | - | chr4_1:71155768-71155787 | None:intergenic | 45.0% | |
| ! | CTTTTGCTCTTGCACTTCTC+TGG | - | chr4_1:71155801-71155820 | None:intergenic | 45.0% |
| GCAAAAGATCCATGAAGCTG+TGG | + | chr4_1:71155814-71155833 | Msa0569280:CDS | 45.0% | |
| GAGAAAAGTTGCTGAGCTTG+AGG | + | chr4_1:71155880-71155899 | Msa0569280:CDS | 45.0% | |
| ! | ACTAGCTGTTTCAGCAGCTT+GGG | - | chr4_1:71156065-71156084 | None:intergenic | 45.0% |
| ! | TACTAGCTGTTTCAGCAGCT+TGG | - | chr4_1:71156066-71156085 | None:intergenic | 45.0% |
| GAACATGAGTCAGAACAGCT+TGG | - | chr4_1:71156268-71156287 | None:intergenic | 45.0% | |
| TCCACTTTCTGTATCTGGCA+AGG | - | chr4_1:71156413-71156432 | None:intergenic | 45.0% | |
| CAGCTTCCACTTTCTGTATC+TGG | - | chr4_1:71156418-71156437 | None:intergenic | 45.0% | |
| CTGATTTCTCGAGCTGCATT+TGG | - | chr4_1:71156600-71156619 | None:intergenic | 45.0% | |
| AATCAAGAGCAGGAAGTTGG+AGG | + | chr4_1:71156852-71156871 | Msa0569280:CDS | 45.0% | |
| ATCAAGAGCAGGAAGTTGGA+GGG | + | chr4_1:71156853-71156872 | Msa0569280:CDS | 45.0% | |
| CAGCAACACAAAGGAATTGG+GGG | - | chr4_1:71157289-71157308 | None:intergenic | 45.0% | |
| CTGCTTTCCAAGAGATGCAA+TGG | - | chr4_1:71157518-71157537 | None:intergenic | 45.0% | |
| GGCTGTTGTCTGAATCAAGT+AGG | - | chr4_1:71157570-71157589 | None:intergenic | 45.0% | |
| TGATTCAGACAACAGCCCTA+TGG | + | chr4_1:71157573-71157592 | Msa0569280:CDS | 45.0% | |
| ACACAAAGTCCCCAAAAAGG+AGG | + | chr4_1:71157613-71157632 | Msa0569280:CDS | 45.0% | |
| ! | AAGAAGCAAGAGTGTGAGCA+GGG | + | chr4_1:71157744-71157763 | Msa0569280:CDS | 45.0% |
| TGAGAAGAGGATAGCATGCG+TGG | - | chr4_1:71153270-71153289 | None:intergenic | 50.0% | |
| ! | CTGCTACTGCTGGTGGTTTT+TGG | + | chr4_1:71154055-71154074 | Msa0569280:five_prime_UTR | 50.0% |
| ! | TGGACAGGAGGAGTTGGTTA+TGG | + | chr4_1:71154090-71154109 | Msa0569280:CDS | 50.0% |
| CCTGAACTTTCCGTTTCACC+TGG | - | chr4_1:71154140-71154159 | None:intergenic | 50.0% | |
| CCAGGTGAAACGGAAAGTTC+AGG | + | chr4_1:71154137-71154156 | Msa0569280:CDS | 50.0% | |
| CTCGGTCTGCACATTCTTCA+TGG | + | chr4_1:71154859-71154878 | Msa0569280:intron | 50.0% | |
| CCTCTGGTGATAGAGTAGCT+TGG | - | chr4_1:71155013-71155032 | None:intergenic | 50.0% | |
| CCAAGCTACTCTATCACCAG+AGG | + | chr4_1:71155010-71155029 | Msa0569280:CDS | 50.0% | |
| CGAATTAGCTGCAGCTCTGT+TGG | + | chr4_1:71155118-71155137 | Msa0569280:CDS | 50.0% | |
| GTTGCTGAAGAAGCTGTCTC+AGG | + | chr4_1:71155182-71155201 | Msa0569280:CDS | 50.0% | |
| AACGTGAACCGGGATCATGA+TGG | - | chr4_1:71155472-71155491 | None:intergenic | 50.0% | |
| TCATGATCCCGGTTCACGTT+AGG | + | chr4_1:71155472-71155491 | Msa0569280:intron | 50.0% | |
| CCTAACTCCTAACGTGAACC+GGG | - | chr4_1:71155482-71155501 | None:intergenic | 50.0% | |
| GCTGCAAGACAGAAGAACTC+AGG | + | chr4_1:71155710-71155729 | Msa0569280:CDS | 50.0% | |
| GGTGACTAACTCGGTCTTCA+AGG | - | chr4_1:71155736-71155755 | None:intergenic | 50.0% | |
| GACCGAGTTAGTCACCTTGA+TGG | + | chr4_1:71155740-71155759 | Msa0569280:CDS | 50.0% | |
| CCCCATCAAGGTGACTAACT+CGG | - | chr4_1:71155745-71155764 | None:intergenic | 50.0% | |
| CCGAGTTAGTCACCTTGATG+GGG | + | chr4_1:71155742-71155761 | Msa0569280:CDS | 50.0% | |
| GCTGCCTCATACACTCTTTG+AGG | - | chr4_1:71155769-71155788 | None:intergenic | 50.0% | |
| CTATTCGCTCCGATCTTCAG+AGG | + | chr4_1:71155939-71155958 | Msa0569280:CDS | 50.0% | |
| TCAGAGGAGACTTGAAGCTG+TGG | + | chr4_1:71155955-71155974 | Msa0569280:CDS | 50.0% | |
| GAGACTTGAAGCTGTGGAGA+AGG | + | chr4_1:71155961-71155980 | Msa0569280:CDS | 50.0% | |
| ! | TGAGCTGCAATCTCGACTTG+AGG | + | chr4_1:71156003-71156022 | Msa0569280:CDS | 50.0% |
| CAGCAAGCCTTTCCATCTCA+AGG | - | chr4_1:71156390-71156409 | None:intergenic | 50.0% | |
| GCCTTGCCAGATACAGAAAG+TGG | + | chr4_1:71156409-71156428 | Msa0569280:CDS | 50.0% | |
| CTCAAGTTCAGCAAGATGCC+AGG | + | chr4_1:71156902-71156921 | Msa0569280:CDS | 50.0% | |
| AGATGCCAGGACTTTGCACA+AGG | + | chr4_1:71156915-71156934 | Msa0569280:CDS | 50.0% | |
| GCTAGTCAACAGCAGCTTGT+CGG | - | chr4_1:71157178-71157197 | None:intergenic | 50.0% | |
| ! | GTAGTTTGGACTCTGGAAGC+AGG | + | chr4_1:71157251-71157270 | Msa0569280:intron | 50.0% |
| CTGCTCACACTCTTGCTTCT+TGG | - | chr4_1:71157745-71157764 | None:intergenic | 50.0% | |
| ! | CAAGAAGCAAGAGTGTGAGC+AGG | + | chr4_1:71157743-71157762 | Msa0569280:CDS | 50.0% |
| CATGCGTGGACCATGTGCAA+GGG | - | chr4_1:71153256-71153275 | None:intergenic | 55.0% | |
| ! | GGTGATTGTGCTGCTACTGC+TGG | + | chr4_1:71154045-71154064 | Msa0569280:five_prime_UTR | 55.0% |
| ! | GATTGTGCTGCTACTGCTGG+TGG | + | chr4_1:71154048-71154067 | Msa0569280:five_prime_UTR | 55.0% |
| ! | GGAGGAGTTGGTTATGGCGA+AGG | + | chr4_1:71154096-71154115 | Msa0569280:CDS | 55.0% |
| GCAGGCTTAGATGTGACCTC+TGG | - | chr4_1:71155029-71155048 | None:intergenic | 55.0% | |
| CCCGGTTCACGTTAGGAGTT+AGG | + | chr4_1:71155479-71155498 | Msa0569280:intron | 55.0% | |
| CTGGGAGAAGGCTGAAAACG+AGG | + | chr4_1:71155661-71155680 | Msa0569280:CDS | 55.0% | |
| ! | ACTCTTTGAGGGCCCCATCA+AGG | - | chr4_1:71155757-71155776 | None:intergenic | 55.0% |
| ! | GGGCCCTCAAAGAGTGTATG+AGG | + | chr4_1:71155762-71155781 | Msa0569280:CDS | 55.0% |
| GCTCTTGCACTTCTCTGGCT+TGG | - | chr4_1:71155796-71155815 | None:intergenic | 55.0% | |
| AGCAGCTTGTCGGTAGTCGA+CGG | - | chr4_1:71157168-71157187 | None:intergenic | 55.0% | |
| GCATGCGTGGACCATGTGCA+AGG | - | chr4_1:71153257-71153276 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 71153148 | 71158029 | 71153148 | ID=Msa0569280;Name=Msa0569280 |
| chr4_1 | mRNA | 71153148 | 71158029 | 71153148 | ID=Msa0569280-mRNA-1;Parent=Msa0569280;Name=Msa0569280-mRNA-1;_AED=0.11;_eAED=0.11;_QI=414|0.6|0.83|0.83|0.6|0.66|6|255|655 |
| chr4_1 | exon | 71153148 | 71153491 | 71153148 | ID=Msa0569280-mRNA-1:exon:24053;Parent=Msa0569280-mRNA-1 |
| chr4_1 | exon | 71154019 | 71154199 | 71154019 | ID=Msa0569280-mRNA-1:exon:24054;Parent=Msa0569280-mRNA-1 |
| chr4_1 | exon | 71154704 | 71154736 | 71154704 | ID=Msa0569280-mRNA-1:exon:24055;Parent=Msa0569280-mRNA-1 |
| chr4_1 | exon | 71154999 | 71155203 | 71154999 | ID=Msa0569280-mRNA-1:exon:24056;Parent=Msa0569280-mRNA-1 |
| chr4_1 | exon | 71155660 | 71156969 | 71155660 | ID=Msa0569280-mRNA-1:exon:24057;Parent=Msa0569280-mRNA-1 |
| chr4_1 | exon | 71157466 | 71158029 | 71157466 | ID=Msa0569280-mRNA-1:exon:24058;Parent=Msa0569280-mRNA-1 |
| chr4_1 | five_prime_UTR | 71153148 | 71153491 | 71153148 | ID=Msa0569280-mRNA-1:five_prime_utr;Parent=Msa0569280-mRNA-1 |
| chr4_1 | five_prime_UTR | 71154019 | 71154088 | 71154019 | ID=Msa0569280-mRNA-1:five_prime_utr;Parent=Msa0569280-mRNA-1 |
| chr4_1 | CDS | 71154089 | 71154199 | 71154089 | ID=Msa0569280-mRNA-1:cds;Parent=Msa0569280-mRNA-1 |
| chr4_1 | CDS | 71154704 | 71154736 | 71154704 | ID=Msa0569280-mRNA-1:cds;Parent=Msa0569280-mRNA-1 |
| chr4_1 | CDS | 71154999 | 71155203 | 71154999 | ID=Msa0569280-mRNA-1:cds;Parent=Msa0569280-mRNA-1 |
| chr4_1 | CDS | 71155660 | 71156969 | 71155660 | ID=Msa0569280-mRNA-1:cds;Parent=Msa0569280-mRNA-1 |
| chr4_1 | CDS | 71157466 | 71157774 | 71157466 | ID=Msa0569280-mRNA-1:cds;Parent=Msa0569280-mRNA-1 |
| chr4_1 | three_prime_UTR | 71157775 | 71158029 | 71157775 | ID=Msa0569280-mRNA-1:three_prime_utr;Parent=Msa0569280-mRNA-1 |
| Gene Sequence |
| Protein sequence |
