AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0745790


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0745790 MtrunA17_Chr5g0443821 93.913 115 7 0 17 131 261 375 1.88e-73 224
Msa0745790 MtrunA17_Chr8g0358401 42.308 104 57 1 1 104 347 447 6.53e-20 84.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0745790 AT5G54880.1 61.111 126 47 2 8 131 260 385 3.85e-45 151

Find 117 sgRNAs with CRISPR-Local

Find 202 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCTAATGAACAATCATAAT+TGG 0.163502 5_1:+67624966 None:intergenic
TCGGCTTTGATTGAAGTTTC+TGG 0.217156 5_1:-67624078 Msa0745790:three_prime_UTR
GAAGCAGCAGACTTGCTAAT+TGG 0.263223 5_1:+67625648 None:intergenic
AACAACTAATATGTCTATTT+CGG 0.291208 5_1:-67625179 Msa0745790:three_prime_UTR
CATAACATTCATGGATTATG+AGG 0.304654 5_1:-67624383 Msa0745790:three_prime_UTR
TCTGGAAAGGCTTATATAAT+CGG 0.324961 5_1:-67624051 Msa0745790:three_prime_UTR
TTCAAAGGAAGCAGTTGAAT+AGG 0.325511 5_1:-67627019 None:intergenic
GTGAATGAGATGAGCTTATA+TGG 0.325559 5_1:-67626780 Msa0745790:CDS
TTGTATGGGAAGCGGGGTTT+TGG 0.327193 5_1:-67624721 Msa0745790:three_prime_UTR
AGACTTGCTAATTGGGAGTT+TGG 0.328244 5_1:+67625656 None:intergenic
TCTCATCTTTACATCGTCTT+TGG 0.329896 5_1:+67626625 None:intergenic
GATTTGCATTAAGTTGAATA+AGG 0.331950 5_1:+67625236 None:intergenic
AATTATGATTGTTCATTAGC+TGG 0.337922 5_1:-67624964 Msa0745790:three_prime_UTR
CGGCATCTTCCACAATCTTT+CGG 0.338745 5_1:+67623789 None:intergenic
GAACATGGGCTAAGGCTAAA+AGG 0.340822 5_1:-67626854 Msa0745790:CDS
GGTGAAGAACTTGATTGTTC+TGG 0.343906 5_1:-67626880 Msa0745790:CDS
AGATACTCGGTACTCATTTA+CGG 0.350405 5_1:-67624440 Msa0745790:three_prime_UTR
AGAAGGATTCATAACATTCA+TGG 0.351739 5_1:-67624392 Msa0745790:three_prime_UTR
CAGTCGATGTTTAATATTAA+CGG 0.355123 5_1:+67623769 None:intergenic
TAATAAGAGAGGGTGAAATT+TGG 0.359616 5_1:+67624344 None:intergenic
AAACAATTATTATCATTTAG+TGG 0.365432 5_1:+67624754 None:intergenic
TCAAAGGAAGCAGTTGAATA+GGG 0.369887 5_1:-67627018 None:intergenic
GAGTATTGTGTTTGCTTTGA+AGG 0.371818 5_1:-67626712 Msa0745790:CDS
AAAATTATGCAAGTTCCTAT+TGG 0.375279 5_1:-67624279 Msa0745790:three_prime_UTR
GATTATGAGGGATTGCATAT+TGG 0.381427 5_1:-67624370 Msa0745790:three_prime_UTR
CAATCATAATTGGGAATCTC+TGG 0.384998 5_1:+67624976 None:intergenic
GATACTCGGTACTCATTTAC+GGG 0.385647 5_1:-67624439 Msa0745790:three_prime_UTR
ATTGAAGTTTCTGGTTTGTC+TGG 0.394369 5_1:-67624069 Msa0745790:three_prime_UTR
CTAATATGTCTATTTCGGTT+TGG 0.395812 5_1:-67625174 Msa0745790:three_prime_UTR
AAGCAGCAGACTTGCTAATT+GGG 0.409238 5_1:+67625649 None:intergenic
GATTGGATTGTATGGGAAGC+GGG 0.410281 5_1:-67624728 Msa0745790:three_prime_UTR
AATCGAAGAATCAATTGGTT+TGG 0.418572 5_1:-67624219 Msa0745790:three_prime_UTR
AAGCTCATCAAGACACCAAT+AGG 0.421942 5_1:+67624264 None:intergenic
ATTCTGAGAGATTACAGAAA+TGG 0.421951 5_1:-67624104 Msa0745790:three_prime_UTR
GATGAAGATTTGACTTTGCT+CGG 0.426177 5_1:-67624670 Msa0745790:three_prime_UTR
GAGGACTCGACTTCTATTCC+TGG 0.431334 5_1:+67624640 None:intergenic
GTAAGGATCTACCAAAGAAC+TGG 0.431924 5_1:+67625576 None:intergenic
GCTGGAATTGTGGTGCAAAA+TGG 0.432474 5_1:+67624850 None:intergenic
TGTTTGCTTTGAAGGCAGTT+GGG 0.435412 5_1:-67626704 Msa0745790:CDS
TGGGGAGAAACACAGTGGTT+TGG 0.438263 5_1:-67626685 Msa0745790:CDS
CTGATCATAGGATGAGATAT+TGG 0.439586 5_1:-67624930 Msa0745790:three_prime_UTR
ATTATGATTGTTCATTAGCT+GGG 0.443381 5_1:-67624963 Msa0745790:three_prime_UTR
GTGGACAAATAACCAGCTTT+AGG 0.443746 5_1:+67626741 None:intergenic
GCTAATGAACAATCATAATT+GGG 0.444792 5_1:+67624967 None:intergenic
TAGGAAATCGAAGAATCAAT+TGG 0.453508 5_1:-67624224 Msa0745790:three_prime_UTR
AAAGAAATGAAGAAACTCAT+AGG 0.454105 5_1:-67625030 Msa0745790:three_prime_UTR
TTCTCATGTCTTATATCTGA+AGG 0.456648 5_1:+67624175 None:intergenic
TGACAATTTGAGGCAATCAA+TGG 0.458203 5_1:-67624497 Msa0745790:three_prime_UTR
GAAAAGATGTGCTTCAAAGC+TGG 0.460574 5_1:+67624832 None:intergenic
GGCTTCACTTTGTAAAAGAT+AGG 0.466746 5_1:+67624196 None:intergenic
TTTGAGCTTGAGGTTTGTGC+TGG 0.469445 5_1:-67626969 Msa0745790:CDS
AACTAAAACTCAACGGATAA+CGG 0.471061 5_1:+67625285 None:intergenic
AGTTTCTGGTTTGTCTGGAA+AGG 0.472424 5_1:-67624064 Msa0745790:three_prime_UTR
GGATTTATAGCGAAAATCCT+TGG 0.473289 5_1:-67626833 Msa0745790:CDS
TTCAATTGCATTAATAAGAG+AGG 0.478056 5_1:+67624333 None:intergenic
CTTAAAATGTAGTTCTGTTG+AGG 0.482594 5_1:-67624536 Msa0745790:three_prime_UTR
TGAATTTATCCGAAAGATTG+TGG 0.486982 5_1:-67623798 Msa0745790:three_prime_UTR
GTGTTTGCTTTGAAGGCAGT+TGG 0.487607 5_1:-67626705 Msa0745790:CDS
TGATTGGATTGTATGGGAAG+CGG 0.494377 5_1:-67624729 Msa0745790:three_prime_UTR
TTAATGCAATTGAAGCATCA+AGG 0.496556 5_1:-67624324 Msa0745790:three_prime_UTR
ATTATTGCAAGAGAAAATGT+AGG 0.497144 5_1:+67623712 None:intergenic
AAGCACGGATAGGAAATAGA+AGG 0.503582 5_1:-67623738 Msa0745790:three_prime_UTR
AGCAAACACAATACTCTCAA+TGG 0.504608 5_1:+67626719 None:intergenic
ACTTTGCTCGGAAAACATCC+AGG 0.509422 5_1:-67624658 Msa0745790:three_prime_UTR
CAGTGGTTTGGATAATCTGT+TGG 0.512792 5_1:-67626673 Msa0745790:CDS
TTTCAAATCGATATCTTGTG+TGG 0.518623 5_1:-67625113 Msa0745790:three_prime_UTR
TGATTGTTCTGGATGGAACA+TGG 0.519741 5_1:-67626869 Msa0745790:CDS
TCTTCGATTTCCTACACTCA+AGG 0.529519 5_1:+67624233 None:intergenic
AGGTAACCCTTCACATTCAA+AGG 0.533084 5_1:+67624585 None:intergenic
GTTACCTGGTACAATTATAG+AGG 0.535956 5_1:-67624569 Msa0745790:three_prime_UTR
CTGGAAAGGCTTATATAATC+GGG 0.537974 5_1:-67624050 Msa0745790:intron
CGAATCCATCGCAGATCTTG+TGG 0.538512 5_1:-67625214 Msa0745790:three_prime_UTR
TAAGACATGAGAAATAGTTA+TGG 0.538995 5_1:-67624165 Msa0745790:three_prime_UTR
CCCACCTCTATAATTGTACC+AGG 0.539192 5_1:+67624565 None:intergenic
TTTGAATGTGAAGGGTTACC+TGG 0.541109 5_1:-67624583 Msa0745790:three_prime_UTR
TATGATGCTCTTTGTCGAGA+AGG 0.543632 5_1:-67624409 Msa0745790:three_prime_UTR
TGTATATACGAAGCACGGAT+AGG 0.552896 5_1:-67623748 Msa0745790:three_prime_UTR
GTTAGTGAATTAGATGCTGT+TGG 0.555693 5_1:-67626909 Msa0745790:CDS
ATAACATTCATGGATTATGA+GGG 0.558927 5_1:-67624382 Msa0745790:three_prime_UTR
AATGTAGTTCTGTTGAGGAG+TGG 0.561062 5_1:-67624531 Msa0745790:three_prime_UTR
TTTGCCGCATTTGAAGTTGG+AGG 0.562587 5_1:-67626802 Msa0745790:CDS
ACCTGGTACAATTATAGAGG+TGG 0.566062 5_1:-67624566 Msa0745790:three_prime_UTR
GTTTGCTTTGAAGGCAGTTG+GGG 0.569465 5_1:-67626703 Msa0745790:CDS
TTCAAATCGATATCTTGTGT+GGG 0.571269 5_1:-67625112 Msa0745790:three_prime_UTR
TTTGACCACAAGATCTGCGA+TGG 0.571563 5_1:+67625209 None:intergenic
TCAATTGCATTAATAAGAGA+GGG 0.571937 5_1:+67624334 None:intergenic
GAAGAAACTCATAGGACAAG+AGG 0.582645 5_1:-67625022 Msa0745790:three_prime_UTR
AAATGGCTCAAATTCACACT+TGG 0.586424 5_1:+67624867 None:intergenic
CACCTCACAGCTAGTGTAGA+CGG 0.587124 5_1:-67625682 Msa0745790:intron
AAGAACTTGATTGTTCTGGA+TGG 0.588745 5_1:-67626876 Msa0745790:CDS
ATTGGATTGTATGGGAAGCG+GGG 0.593038 5_1:-67624727 Msa0745790:three_prime_UTR
GTACGAGGAATTTGAGCTTG+AGG 0.593286 5_1:-67626979 Msa0745790:CDS
TCGTCTTTGGTCACCAACCA+TGG 0.598832 5_1:+67626638 None:intergenic
TGCGGCAAAATGTTCAGCCA+AGG 0.601245 5_1:+67626816 None:intergenic
AATCAGAAAGTCAATGACTT+CGG 0.603190 5_1:+67625621 None:intergenic
GATGCTGCCTTTGAATGTGA+AGG 0.603986 5_1:-67624592 Msa0745790:three_prime_UTR
TCTGGATGGAACATGGGCTA+AGG 0.604029 5_1:-67626862 Msa0745790:CDS
GATTGTTCTGGATGGAACAT+GGG 0.605034 5_1:-67626868 Msa0745790:CDS
TTGCGAAGATCCTTGAGTGT+AGG 0.608687 5_1:-67624243 Msa0745790:three_prime_UTR
TGAGCTTATATGGTGAAGTG+AGG 0.615027 5_1:-67626770 Msa0745790:CDS
CCTGGTACAATTATAGAGGT+GGG 0.617388 5_1:-67624565 Msa0745790:three_prime_UTR
TTCACCTCCAACTTCAAATG+CGG 0.631125 5_1:+67626798 None:intergenic
TTATGATTGTTCATTAGCTG+GGG 0.632290 5_1:-67624962 Msa0745790:three_prime_UTR
ATAATCAAACTAAAACTCAA+CGG 0.632837 5_1:+67625278 None:intergenic
GAGATTACAGAAATGGAAGT+CGG 0.635772 5_1:-67624097 Msa0745790:three_prime_UTR
GCTACATTAGATATAAGCGA+TGG 0.639309 5_1:-67623684 Msa0745790:three_prime_UTR
ATGCTGCCTTTGAATGTGAA+GGG 0.648957 5_1:-67624591 Msa0745790:three_prime_UTR
TAGATTCGATATGTCAGATG+AGG 0.649465 5_1:+67624621 None:intergenic
ACACTAACAGCATTATCCGA+AGG 0.649505 5_1:+67626930 None:intergenic
GTGCTTCAAAGCTGGAATTG+TGG 0.654953 5_1:+67624840 None:intergenic
TCGACTGTATATACGAAGCA+CGG 0.655820 5_1:-67623753 Msa0745790:three_prime_UTR
TATCGTGAAACATGTCGAGA+GGG 0.657935 5_1:-67625148 Msa0745790:three_prime_UTR
AAGGAAGCAGTTGAATAGGG+AGG 0.661583 5_1:-67627015 None:intergenic
ATATCGTGAAACATGTCGAG+AGG 0.669887 5_1:-67625149 Msa0745790:three_prime_UTR
GGAAAATGTCGAAGAGTACG+AGG 0.670310 5_1:-67626994 Msa0745790:CDS
AAACACAATACTCTCAATGG+TGG 0.679070 5_1:+67626722 None:intergenic
GCAGTTGGGGAGAAACACAG+TGG 0.768523 5_1:-67626690 Msa0745790:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTTATATTTTAGAATAG+GGG + chr5_1:67624780-67624799 None:intergenic 10.0%
!!! CAAATTTTATATTTTAGAAT+AGG + chr5_1:67624782-67624801 None:intergenic 10.0%
!!! ATTTCAAAACTATTTCTTTT+GGG + chr5_1:67624092-67624111 None:intergenic 15.0%
!!! GTATTTTTTTTATACAAACT+CGG + chr5_1:67624643-67624662 None:intergenic 15.0%
!!! ATATTTCTACATAAAATTGA+AGG + chr5_1:67625244-67625263 None:intergenic 15.0%
!! AAACAATTATTATCATTTAG+TGG + chr5_1:67625856-67625875 None:intergenic 15.0%
!!! GATAATAATTGTTTTATGAT+TGG - chr5_1:67625862-67625881 Msa0745790:intron 15.0%
!!! TGATAATTTGTTTTTGAATA+TGG - chr5_1:67626997-67627016 Msa0745790:CDS 15.0%
!!! CATTTCAAAACTATTTCTTT+TGG + chr5_1:67624093-67624112 None:intergenic 20.0%
!! TGAGAATTAAATTACATGTA+TGG + chr5_1:67624423-67624442 None:intergenic 20.0%
!! CAACATCTTATTGTTTATAA+AGG - chr5_1:67624684-67624703 Msa0745790:three_prime_UTR 20.0%
!! TTGAAAATGTCTTGTAAAAA+GGG + chr5_1:67624824-67624843 None:intergenic 20.0%
!! TTTGAAAATGTCTTGTAAAA+AGG + chr5_1:67624825-67624844 None:intergenic 20.0%
!! ATAGCTATATGATTAACTAA+TGG - chr5_1:67624897-67624916 Msa0745790:three_prime_UTR 20.0%
!! TAGCTATATGATTAACTAAT+GGG - chr5_1:67624898-67624917 Msa0745790:three_prime_UTR 20.0%
!!! TACAGAAAACAAATGTTTTA+AGG + chr5_1:67625061-67625080 None:intergenic 20.0%
!! GAAACATACATTATAAATGA+AGG - chr5_1:67625210-67625229 Msa0745790:three_prime_UTR 20.0%
!! ATAATCAAACTAAAACTCAA+CGG + chr5_1:67625332-67625351 None:intergenic 20.0%
!! AACAACTAATATGTCTATTT+CGG - chr5_1:67625428-67625447 Msa0745790:intron 20.0%
!!! TTATTTTAACTAGCATTTCA+TGG + chr5_1:67625708-67625727 None:intergenic 20.0%
! CAATCAAAAGAAGAAATCAA+GGG + chr5_1:67624039-67624058 None:intergenic 25.0%
! TCAATCAAAAGAAGAAATCA+AGG + chr5_1:67624040-67624059 None:intergenic 25.0%
! TCTTCACATTTCTTCAAAAT+TGG - chr5_1:67624390-67624409 Msa0745790:three_prime_UTR 25.0%
! TACTATCAACAAATGAAATC+AGG + chr5_1:67624449-67624468 None:intergenic 25.0%
! AAATCCATGATAATTCTACT+AGG + chr5_1:67624601-67624620 None:intergenic 25.0%
! TTCACATCAATAATTGAAGA+TGG - chr5_1:67624711-67624730 Msa0745790:three_prime_UTR 25.0%
! TGAAAATGTCTTGTAAAAAG+GGG + chr5_1:67624823-67624842 None:intergenic 25.0%
!!! AAATGTTTTAAGGAAGAGTA+AGG + chr5_1:67625051-67625070 None:intergenic 25.0%
! AACACTTGATCAAATAGAAA+AGG + chr5_1:67625150-67625169 None:intergenic 25.0%
! TAATTTATTCCATTTCTTGC+TGG - chr5_1:67625182-67625201 Msa0745790:three_prime_UTR 25.0%
! AAAGAAAGAAAGAATTGTGA+CGG + chr5_1:67625281-67625300 None:intergenic 25.0%
!!! GATTTGCATTAAGTTGAATA+AGG + chr5_1:67625374-67625393 None:intergenic 25.0%
! AAAGAAATGAAGAAACTCAT+AGG - chr5_1:67625577-67625596 Msa0745790:intron 25.0%
! GCTAATGAACAATCATAATT+GGG + chr5_1:67625643-67625662 None:intergenic 25.0%
! AGCTAATGAACAATCATAAT+TGG + chr5_1:67625644-67625663 None:intergenic 25.0%
! AATTATGATTGTTCATTAGC+TGG - chr5_1:67625643-67625662 Msa0745790:three_prime_UTR 25.0%
! ATTATGATTGTTCATTAGCT+GGG - chr5_1:67625644-67625663 Msa0745790:exon 25.0%
!! TGTTTTATGATTGGATTGTA+TGG - chr5_1:67625871-67625890 Msa0745790:intron 25.0%
!! GTTTTATGATTGGATTGTAT+GGG - chr5_1:67625872-67625891 Msa0745790:intron 25.0%
!! AAGAATCTTTTGACAATTTG+AGG - chr5_1:67626100-67626119 Msa0745790:intron 25.0%
!! ATAACATTCATGGATTATGA+GGG - chr5_1:67626225-67626244 Msa0745790:intron 25.0%
! TCAATTGCATTAATAAGAGA+GGG + chr5_1:67626276-67626295 None:intergenic 25.0%
! TTCAATTGCATTAATAAGAG+AGG + chr5_1:67626277-67626296 None:intergenic 25.0%
! AAAATTATGCAAGTTCCTAT+TGG - chr5_1:67626328-67626347 Msa0745790:intron 25.0%
! TAAGACATGAGAAATAGTTA+TGG - chr5_1:67626442-67626461 Msa0745790:intron 25.0%
! TTGTGCTATAGAAAATTTGT+TGG - chr5_1:67626713-67626732 Msa0745790:CDS 25.0%
! CAGTCGATGTTTAATATTAA+CGG + chr5_1:67626841-67626860 None:intergenic 25.0%
! ATTATTGCAAGAGAAAATGT+AGG + chr5_1:67626898-67626917 None:intergenic 25.0%
!!! ATCTGTACTACTTTTTCCTT+CGG - chr5_1:67623661-67623680 Msa0745790:three_prime_UTR 30.0%
GTTAAGTGTTAACTACAACA+AGG - chr5_1:67624280-67624299 Msa0745790:three_prime_UTR 30.0%
! AGGAGAAACAAATTCTGAAA+AGG - chr5_1:67624300-67624319 Msa0745790:three_prime_UTR 30.0%
GAAAAGGAAGAATAAGTGAA+TGG - chr5_1:67624316-67624335 Msa0745790:three_prime_UTR 30.0%
TTACAAGAATTCACATGACA+TGG - chr5_1:67624342-67624361 Msa0745790:three_prime_UTR 30.0%
!!! AGGCTCTTATTTTATAGGAT+AGG + chr5_1:67624749-67624768 None:intergenic 30.0%
!!! TAACGAGGCTCTTATTTTAT+AGG + chr5_1:67624754-67624773 None:intergenic 30.0%
AATCAGAAAGTCAATGACTT+CGG + chr5_1:67624989-67625008 None:intergenic 30.0%
!!! TTTCTTTCTTTTTTTGTCGC+AGG - chr5_1:67625290-67625309 Msa0745790:three_prime_UTR 30.0%
AACTAAAACTCAACGGATAA+CGG + chr5_1:67625325-67625344 None:intergenic 30.0%
CTAATATGTCTATTTCGGTT+TGG - chr5_1:67625433-67625452 Msa0745790:intron 30.0%
TTTCAAATCGATATCTTGTG+TGG - chr5_1:67625494-67625513 Msa0745790:intron 30.0%
TTCAAATCGATATCTTGTGT+GGG - chr5_1:67625495-67625514 Msa0745790:intron 30.0%
!!! TCAACAATACTGTTTTTGAG+TGG - chr5_1:67625551-67625570 Msa0745790:intron 30.0%
TTATGATTGTTCATTAGCTG+GGG - chr5_1:67625645-67625664 Msa0745790:exon 30.0%
! CTCAACAGAACTACATTTTA+AGG + chr5_1:67626073-67626092 None:intergenic 30.0%
! CTTAAAATGTAGTTCTGTTG+AGG - chr5_1:67626071-67626090 Msa0745790:intron 30.0%
!! CAGATTTTCATCAGTTTTAG+AGG - chr5_1:67626141-67626160 Msa0745790:intron 30.0%
AGAAGGATTCATAACATTCA+TGG - chr5_1:67626215-67626234 Msa0745790:intron 30.0%
! CATAACATTCATGGATTATG+AGG - chr5_1:67626224-67626243 Msa0745790:intron 30.0%
TAATAAGAGAGGGTGAAATT+TGG + chr5_1:67626266-67626285 None:intergenic 30.0%
! TTAATGCAATTGAAGCATCA+AGG - chr5_1:67626283-67626302 Msa0745790:intron 30.0%
TAGGAAATCGAAGAATCAAT+TGG - chr5_1:67626383-67626402 Msa0745790:intron 30.0%
AATCGAAGAATCAATTGGTT+TGG - chr5_1:67626388-67626407 Msa0745790:intron 30.0%
TTCTCATGTCTTATATCTGA+AGG + chr5_1:67626435-67626454 None:intergenic 30.0%
ACCGAACATGAACAAAAATT+CGG - chr5_1:67626475-67626494 Msa0745790:intron 30.0%
! ACCGAATTTTTGTTCATGTT+CGG + chr5_1:67626479-67626498 None:intergenic 30.0%
! ATTCTGAGAGATTACAGAAA+TGG - chr5_1:67626503-67626522 Msa0745790:intron 30.0%
TCTGGAAAGGCTTATATAAT+CGG - chr5_1:67626556-67626575 Msa0745790:intron 30.0%
ACTAGTTGTAGATGTTAGTT+TGG - chr5_1:67626641-67626660 Msa0745790:CDS 30.0%
TACCTACAAGATATACACAA+GGG + chr5_1:67626783-67626802 None:intergenic 30.0%
TGAATTTATCCGAAAGATTG+TGG - chr5_1:67626809-67626828 Msa0745790:CDS 30.0%
GTTAGTGAATTAGATGCTGT+TGG - chr5_1:67623698-67623717 Msa0745790:three_prime_UTR 35.0%
!!! ATTAGATGCTGTTGGTTTTG+AGG - chr5_1:67623706-67623725 Msa0745790:three_prime_UTR 35.0%
! AAGAACTTGATTGTTCTGGA+TGG - chr5_1:67623731-67623750 Msa0745790:three_prime_UTR 35.0%
GGATTTATAGCGAAAATCCT+TGG - chr5_1:67623774-67623793 Msa0745790:three_prime_UTR 35.0%
GTGAATGAGATGAGCTTATA+TGG - chr5_1:67623827-67623846 Msa0745790:intron 35.0%
AAACACAATACTCTCAATGG+TGG + chr5_1:67623888-67623907 None:intergenic 35.0%
AGCAAACACAATACTCTCAA+TGG + chr5_1:67623891-67623910 None:intergenic 35.0%
! GAGTATTGTGTTTGCTTTGA+AGG - chr5_1:67623895-67623914 Msa0745790:intron 35.0%
TCTCATCTTTACATCGTCTT+TGG + chr5_1:67623985-67624004 None:intergenic 35.0%
TTATGAACCATGAAACCTCT+AGG - chr5_1:67624115-67624134 Msa0745790:three_prime_UTR 35.0%
TTATTGCAATCCTTCTTCTG+AGG + chr5_1:67624159-67624178 None:intergenic 35.0%
AAGGATTGCAATAATCAAGC+TGG - chr5_1:67624165-67624184 Msa0745790:three_prime_UTR 35.0%
TTTACTACATCATCATCACG+TGG + chr5_1:67624247-67624266 None:intergenic 35.0%
CAATTCTAGTCAAAGATTGC+TGG - chr5_1:67624518-67624537 Msa0745790:three_prime_UTR 35.0%
AATTCTACTAGGACCAATGA+AGG + chr5_1:67624590-67624609 None:intergenic 35.0%
TGGTCCTAGTAGAATTATCA+TGG - chr5_1:67624594-67624613 Msa0745790:three_prime_UTR 35.0%
TTAGAATAGGGGTAATAACG+AGG + chr5_1:67624769-67624788 None:intergenic 35.0%
!! TCAGTCATTTTCCAGTTCTT+TGG - chr5_1:67625020-67625039 Msa0745790:three_prime_UTR 35.0%
CAATCATAATTGGGAATCTC+TGG + chr5_1:67625634-67625653 None:intergenic 35.0%
CTGATCATAGGATGAGATAT+TGG - chr5_1:67625677-67625696 Msa0745790:intron 35.0%
AAATGGCTCAAATTCACACT+TGG + chr5_1:67625743-67625762 None:intergenic 35.0%
! GTCTTTTGAGCCTATAAAAG+AGG - chr5_1:67625810-67625829 Msa0745790:intron 35.0%
!! CTATCTGAAGCCTCTTTTAT+AGG + chr5_1:67625823-67625842 None:intergenic 35.0%
! GATGAAGATTTGACTTTGCT+CGG - chr5_1:67625937-67625956 Msa0745790:intron 35.0%
TAGATTCGATATGTCAGATG+AGG + chr5_1:67625989-67626008 None:intergenic 35.0%
GTTACCTGGTACAATTATAG+AGG - chr5_1:67626038-67626057 Msa0745790:intron 35.0%
! TGACAATTTGAGGCAATCAA+TGG - chr5_1:67626110-67626129 Msa0745790:intron 35.0%
!!! GTTTTAGAGGAGAAGATACT+CGG - chr5_1:67626154-67626173 Msa0745790:intron 35.0%
AGATACTCGGTACTCATTTA+CGG - chr5_1:67626167-67626186 Msa0745790:intron 35.0%
GATTATGAGGGATTGCATAT+TGG - chr5_1:67626237-67626256 Msa0745790:intron 35.0%
GGCTTCACTTTGTAAAAGAT+AGG + chr5_1:67626414-67626433 None:intergenic 35.0%
GAGATTACAGAAATGGAAGT+CGG - chr5_1:67626510-67626529 Msa0745790:intron 35.0%
!! ATTGAAGTTTCTGGTTTGTC+TGG - chr5_1:67626538-67626557 Msa0745790:intron 35.0%
CTGGAAAGGCTTATATAATC+GGG - chr5_1:67626557-67626576 Msa0745790:intron 35.0%
TGTTCAGTAACGAAACTACA+CGG + chr5_1:67626748-67626767 None:intergenic 35.0%
ATCCCTTGTGTATATCTTGT+AGG - chr5_1:67626778-67626797 Msa0745790:CDS 35.0%
GTACCTACAAGATATACACA+AGG + chr5_1:67626784-67626803 None:intergenic 35.0%
GCTACATTAGATATAAGCGA+TGG - chr5_1:67626923-67626942 Msa0745790:CDS 35.0%
ACACTAACAGCATTATCCGA+AGG + chr5_1:67623680-67623699 None:intergenic 40.0%
GGTGAAGAACTTGATTGTTC+TGG - chr5_1:67623727-67623746 Msa0745790:three_prime_UTR 40.0%
! TGATTGTTCTGGATGGAACA+TGG - chr5_1:67623738-67623757 Msa0745790:three_prime_UTR 40.0%
! GATTGTTCTGGATGGAACAT+GGG - chr5_1:67623739-67623758 Msa0745790:three_prime_UTR 40.0%
!! CATTTTGCCGCATTTGAAGT+TGG - chr5_1:67623802-67623821 Msa0745790:three_prime_UTR 40.0%
TTCACCTCCAACTTCAAATG+CGG + chr5_1:67623812-67623831 None:intergenic 40.0%
TGAGCTTATATGGTGAAGTG+AGG - chr5_1:67623837-67623856 Msa0745790:intron 40.0%
GTGGACAAATAACCAGCTTT+AGG + chr5_1:67623869-67623888 None:intergenic 40.0%
!! TGTTTGCTTTGAAGGCAGTT+GGG - chr5_1:67623903-67623922 Msa0745790:intron 40.0%
! CAGTGGTTTGGATAATCTGT+TGG - chr5_1:67623934-67623953 Msa0745790:intron 40.0%
!! GTTGGATACTTTTGAGTCCA+TGG - chr5_1:67623952-67623971 Msa0745790:intron 40.0%
!! GATACTTTTGAGTCCATGGT+TGG - chr5_1:67623956-67623975 Msa0745790:intron 40.0%
AGCAAACTGTTACCTAGTTG+AGG - chr5_1:67624010-67624029 Msa0745790:intron 40.0%
AGAAACTCCTAGAGGTTTCA+TGG + chr5_1:67624125-67624144 None:intergenic 40.0%
TGTCTTGTAAAAAGGGGACA+GGG + chr5_1:67624817-67624836 None:intergenic 40.0%
ATGTCTTGTAAAAAGGGGAC+AGG + chr5_1:67624818-67624837 None:intergenic 40.0%
!! AGACTTGCTAATTGGGAGTT+TGG + chr5_1:67624954-67624973 None:intergenic 40.0%
!! AAGCAGCAGACTTGCTAATT+GGG + chr5_1:67624961-67624980 None:intergenic 40.0%
GTAAGGATCTACCAAAGAAC+TGG + chr5_1:67625034-67625053 None:intergenic 40.0%
TTTCACGATCCAGCAAGAAA+TGG + chr5_1:67625194-67625213 None:intergenic 40.0%
ATATCGTGAAACATGTCGAG+AGG - chr5_1:67625458-67625477 Msa0745790:intron 40.0%
TATCGTGAAACATGTCGAGA+GGG - chr5_1:67625459-67625478 Msa0745790:intron 40.0%
TATCTTGTGTGGGAAAAAGC+TGG - chr5_1:67625505-67625524 Msa0745790:intron 40.0%
GAAGAAACTCATAGGACAAG+AGG - chr5_1:67625585-67625604 Msa0745790:intron 40.0%
! GGGTATTTTCTGCTGATCAT+AGG - chr5_1:67625665-67625684 Msa0745790:CDS 40.0%
GAAAAGATGTGCTTCAAAGC+TGG + chr5_1:67625778-67625797 None:intergenic 40.0%
TGATTGGATTGTATGGGAAG+CGG - chr5_1:67625878-67625897 Msa0745790:intron 40.0%
ATGCTGCCTTTGAATGTGAA+GGG - chr5_1:67626016-67626035 Msa0745790:intron 40.0%
AGGTAACCCTTCACATTCAA+AGG + chr5_1:67626025-67626044 None:intergenic 40.0%
TTTGAATGTGAAGGGTTACC+TGG - chr5_1:67626024-67626043 Msa0745790:intron 40.0%
ACCTGGTACAATTATAGAGG+TGG - chr5_1:67626041-67626060 Msa0745790:intron 40.0%
CCTGGTACAATTATAGAGGT+GGG - chr5_1:67626042-67626061 Msa0745790:intron 40.0%
! AATGTAGTTCTGTTGAGGAG+TGG - chr5_1:67626076-67626095 Msa0745790:intron 40.0%
GATACTCGGTACTCATTTAC+GGG - chr5_1:67626168-67626187 Msa0745790:intron 40.0%
TATGATGCTCTTTGTCGAGA+AGG - chr5_1:67626198-67626217 Msa0745790:intron 40.0%
AAGCTCATCAAGACACCAAT+AGG + chr5_1:67626346-67626365 None:intergenic 40.0%
TCTTCGATTTCCTACACTCA+AGG + chr5_1:67626377-67626396 None:intergenic 40.0%
! TCGGCTTTGATTGAAGTTTC+TGG - chr5_1:67626529-67626548 Msa0745790:intron 40.0%
!! AGTTTCTGGTTTGTCTGGAA+AGG - chr5_1:67626543-67626562 Msa0745790:intron 40.0%
TCGACTGTATATACGAAGCA+CGG - chr5_1:67626854-67626873 Msa0745790:CDS 40.0%
TGTATATACGAAGCACGGAT+AGG - chr5_1:67626859-67626878 Msa0745790:CDS 40.0%
AAGCACGGATAGGAAATAGA+AGG - chr5_1:67626869-67626888 Msa0745790:CDS 40.0%
! GGAAAATGTCGAAGAGTACG+AGG - chr5_1:67623613-67623632 Msa0745790:three_prime_UTR 45.0%
GTACGAGGAATTTGAGCTTG+AGG - chr5_1:67623628-67623647 Msa0745790:three_prime_UTR 45.0%
TTTGAGCTTGAGGTTTGTGC+TGG - chr5_1:67623638-67623657 Msa0745790:three_prime_UTR 45.0%
! GAACATGGGCTAAGGCTAAA+AGG - chr5_1:67623753-67623772 Msa0745790:three_prime_UTR 45.0%
! TTTGCCGCATTTGAAGTTGG+AGG - chr5_1:67623805-67623824 Msa0745790:three_prime_UTR 45.0%
!! GTGTTTGCTTTGAAGGCAGT+TGG - chr5_1:67623902-67623921 Msa0745790:intron 45.0%
!! GTTTGCTTTGAAGGCAGTTG+GGG - chr5_1:67623904-67623923 Msa0745790:intron 45.0%
AATCAAGGGCTACCTCAACT+AGG + chr5_1:67624025-67624044 None:intergenic 45.0%
! ATCCTTCTTCTGAGGATACG+CGG + chr5_1:67624151-67624170 None:intergenic 45.0%
ATGAAGGTCTGACGGTTGAA+GGG + chr5_1:67624574-67624593 None:intergenic 45.0%
AATGAAGGTCTGACGGTTGA+AGG + chr5_1:67624575-67624594 None:intergenic 45.0%
TTCAACCGTCAGACCTTCAT+TGG - chr5_1:67624574-67624593 Msa0745790:three_prime_UTR 45.0%
TAGGACCAATGAAGGTCTGA+CGG + chr5_1:67624582-67624601 None:intergenic 45.0%
!! GAAGCAGCAGACTTGCTAAT+TGG + chr5_1:67624962-67624981 None:intergenic 45.0%
TTTGACCACAAGATCTGCGA+TGG + chr5_1:67625401-67625420 None:intergenic 45.0%
GCTGGAATTGTGGTGCAAAA+TGG + chr5_1:67625760-67625779 None:intergenic 45.0%
GTGCTTCAAAGCTGGAATTG+TGG + chr5_1:67625770-67625789 None:intergenic 45.0%
GATTGGATTGTATGGGAAGC+GGG - chr5_1:67625879-67625898 Msa0745790:intron 45.0%
ATTGGATTGTATGGGAAGCG+GGG - chr5_1:67625880-67625899 Msa0745790:intron 45.0%
ACTTTGCTCGGAAAACATCC+AGG - chr5_1:67625949-67625968 Msa0745790:intron 45.0%
GATGCTGCCTTTGAATGTGA+AGG - chr5_1:67626015-67626034 Msa0745790:intron 45.0%
CCCACCTCTATAATTGTACC+AGG + chr5_1:67626045-67626064 None:intergenic 45.0%
TTGCGAAGATCCTTGAGTGT+AGG - chr5_1:67626364-67626383 Msa0745790:intron 45.0%
CGGCATCTTCCACAATCTTT+CGG + chr5_1:67626821-67626840 None:intergenic 45.0%
!!! AAATTTTATATTTTAGAATA+GGG + chr5_1:67624781-67624800 None:intergenic 5.0%
! TCTGGATGGAACATGGGCTA+AGG - chr5_1:67623745-67623764 Msa0745790:three_prime_UTR 50.0%
TGCGGCAAAATGTTCAGCCA+AGG + chr5_1:67623794-67623813 None:intergenic 50.0%
GTGAGGAATCAGCCTAAAGC+TGG - chr5_1:67623854-67623873 Msa0745790:intron 50.0%
TGGGGAGAAACACAGTGGTT+TGG - chr5_1:67623922-67623941 Msa0745790:intron 50.0%
TCGTCTTTGGTCACCAACCA+TGG + chr5_1:67623972-67623991 None:intergenic 50.0%
! TCCTTCTTCTGAGGATACGC+GGG + chr5_1:67624150-67624169 None:intergenic 50.0%
CTACATCATCATCACGTGGC+TGG + chr5_1:67624243-67624262 None:intergenic 50.0%
TGAAGGTCTGACGGTTGAAG+GGG + chr5_1:67624573-67624592 None:intergenic 50.0%
CACCTCACAGCTAGTGTAGA+CGG - chr5_1:67624925-67624944 Msa0745790:three_prime_UTR 50.0%
CGAATCCATCGCAGATCTTG+TGG - chr5_1:67625393-67625412 Msa0745790:intron 50.0%
! TTGTATGGGAAGCGGGGTTT+TGG - chr5_1:67625886-67625905 Msa0745790:intron 50.0%
GAGGACTCGACTTCTATTCC+TGG + chr5_1:67625970-67625989 None:intergenic 50.0%
GCAGTTGGGGAGAAACACAG+TGG - chr5_1:67623917-67623936 Msa0745790:intron 55.0%
! CCTTCTTCTGAGGATACGCG+GGG + chr5_1:67624149-67624168 None:intergenic 55.0%
CTCCGTCTACACTAGCTGTG+AGG + chr5_1:67624930-67624949 None:intergenic 55.0%
CCCCGCGTATCCTCAGAAGA+AGG - chr5_1:67624146-67624165 Msa0745790:three_prime_UTR 60.0%
CGCGGGGCAGAAACTCCTAG+AGG + chr5_1:67624133-67624152 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 67623602 67627027 67623602 ID=Msa0745790;Name=Msa0745790
chr5_1 mRNA 67623602 67627027 67623602 ID=Msa0745790-mRNA-1;Parent=Msa0745790;Name=Msa0745790-mRNA-1;_AED=0.31;_eAED=0.31;_QI=0|0.66|0.5|1|0|0|4|1570|140
chr5_1 exon 67623602 67623829 67623602 ID=Msa0745790-mRNA-1:exon:20173;Parent=Msa0745790-mRNA-1
chr5_1 exon 67624051 67625317 67624051 ID=Msa0745790-mRNA-1:exon:20172;Parent=Msa0745790-mRNA-1
chr5_1 exon 67625588 67625694 67625588 ID=Msa0745790-mRNA-1:exon:20171;Parent=Msa0745790-mRNA-1
chr5_1 exon 67626637 67627027 67626637 ID=Msa0745790-mRNA-1:exon:20170;Parent=Msa0745790-mRNA-1
chr5_1 CDS 67626637 67627027 67626637 ID=Msa0745790-mRNA-1:cds;Parent=Msa0745790-mRNA-1
chr5_1 CDS 67625663 67625694 67625663 ID=Msa0745790-mRNA-1:cds;Parent=Msa0745790-mRNA-1
chr5_1 three_prime_UTR 67625588 67625662 67625588 ID=Msa0745790-mRNA-1:three_prime_utr;Parent=Msa0745790-mRNA-1
chr5_1 three_prime_UTR 67624051 67625317 67624051 ID=Msa0745790-mRNA-1:three_prime_utr;Parent=Msa0745790-mRNA-1
chr5_1 three_prime_UTR 67623602 67623829 67623602 ID=Msa0745790-mRNA-1:three_prime_utr;Parent=Msa0745790-mRNA-1
Gene Sequence

>Msa0745790

TTGAATAGGGAGGAAAATGTCGAAGAGTACGAGGAATTTGAGCTTGAGGTTTGTGCTGGATCTGTACTACTTTTTCCTTCGGATAATGCTGTTAGTGTTAGTGAATTAGATGCTGTTGGTTTTGAGGTGAAGAACTTGATTGTTCTGGATGGAACATGGGCTAAGGCTAAAAGGATTTATAGCGAAAATCCTTGGCTGAACATTTTGCCGCATTTGAAGTTGGAGGTGAATGAGATGAGCTTATATGGTGAAGTGAGGAATCAGCCTAAAGCTGGTTATTTGTCCACCATTGAGAGTATTGTGTTTGCTTTGAAGGCAGTTGGGGAGAAACACAGTGGTTTGGATAATCTGTTGGATACTTTTGAGTCCATGGTTGGTGACCAAAGACGATCTAGTGTAGACGGAGTCCAAACTCCCAATTAG

Protein sequence

>Msa0745790

LNREENVEEYEEFELEVCAGSVLLFPSDNAVSVSELDAVGFEVKNLIVLDGTWAKAKRIYSENPWLNILPHLKLEVNEMSLYGEVRNQPKAGYLSTIESIVFALKAVGEKHSGLDNLLDTFESMVGDQRRSSVDGVQTPN*